Query psy16159
Match_columns 175
No_of_seqs 112 out of 623
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 22:18:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16159.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16159hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d256ba_ a.24.3.1 (A:) Cytochro 69.5 3.3 0.00024 27.3 4.6 33 3-35 73-105 (106)
2 d1ng6a_ a.182.1.1 (A:) Hypothe 37.2 48 0.0035 22.5 6.5 18 114-131 96-113 (148)
3 d2jdig1 c.49.2.1 (G:1-272) ATP 35.0 18 0.0013 26.6 4.0 29 39-67 1-29 (272)
4 d256ba_ a.24.3.1 (A:) Cytochro 28.5 67 0.0049 20.4 6.0 37 57-93 3-39 (106)
5 d2dkla1 a.5.2.1 (A:8-79) Trinu 21.8 36 0.0026 20.6 2.9 25 83-107 13-37 (72)
6 d1u9pa1 a.43.1.1 (A:72-107) Ar 19.3 35 0.0026 17.5 2.1 19 117-135 2-20 (36)
7 d1g99a2 c.55.1.2 (A:198-398) A 16.3 1.3E+02 0.0097 21.4 5.6 42 3-44 88-129 (201)
8 d1saza2 c.55.1.2 (A:173-375) b 15.2 1.5E+02 0.011 21.1 5.6 43 3-45 85-128 (203)
9 d1sfua_ a.4.5.19 (A:) 34L {Yab 14.9 10 0.00074 23.2 -1.0 32 4-35 14-45 (70)
10 d2e1za2 c.55.1.2 (A:193-397) P 11.9 1.9E+02 0.013 20.6 5.3 43 3-45 88-130 (205)
No 1
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=69.53 E-value=3.3 Score=27.32 Aligned_cols=33 Identities=30% Similarity=0.286 Sum_probs=29.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q psy16159 3 LEIKKAAKEGDKIAATILAKQLIQIRKQKTRTY 35 (175)
Q Consensus 3 ~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~ 35 (175)
..|...++.|+.+.|+.+.+++-.+|+..=+.|
T Consensus 73 d~i~~la~~G~l~eAk~~l~~l~~~r~~YHkk~ 105 (106)
T d256ba_ 73 DDALKLANEGKVKEAQAAAEQLKTTRNAYHQKY 105 (106)
T ss_dssp HHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 568899999999999999999999999887665
No 2
>d1ng6a_ a.182.1.1 (A:) Hypothetical protein YqeY {Bacillus subtilis [TaxId: 1423]}
Probab=37.21 E-value=48 Score=22.50 Aligned_cols=18 Identities=28% Similarity=0.639 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHHhch
Q psy16159 114 DEQESNKIIDQVLGEIGI 131 (175)
Q Consensus 114 ~eee~d~~v~qVl~E~gl 131 (175)
.++|++.+|.+++.|+|.
T Consensus 96 seeEl~~~v~~~i~e~~a 113 (148)
T d1ng6a_ 96 SEEELRTIVNETIAEVGA 113 (148)
T ss_dssp CHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhCC
Confidence 478999999999999974
No 3
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=34.98 E-value=18 Score=26.57 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy16159 39 GKVHSIGIQNKTMGSNIKMAEAMKNTADT 67 (175)
Q Consensus 39 a~l~sv~~~l~~~~s~~~~~~~m~~~~~~ 67 (175)
|.|..+..|+.+..++.+++++|+-++.+
T Consensus 1 A~Lkeik~RI~Sv~~t~kITkAMkmVAas 29 (272)
T d2jdig1 1 ATLKDITRRLKSIKNIQKITKSMKMVAAA 29 (272)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888899999899999998866643
No 4
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=28.50 E-value=67 Score=20.36 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy16159 57 MAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITR 93 (175)
Q Consensus 57 ~~~~m~~~~~~M~~~n~~m~~~~l~~~M~ef~ke~~~ 93 (175)
+..+|......++.+.+.-+..+|...|++|..-+..
T Consensus 3 l~~~M~~m~~a~k~~~~A~s~~Ei~~~m~~lr~a~~d 39 (106)
T d256ba_ 3 LEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALD 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 4567788888888888889999999999998765544
No 5
>d2dkla1 a.5.2.1 (A:8-79) Trinucleotide repeat containing 6c protein, TNRC6C {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.79 E-value=36 Score=20.60 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhh
Q psy16159 83 SAQEFQQGITRMNMTDEMIDEALDD 107 (175)
Q Consensus 83 ~M~ef~ke~~~~~i~~emm~d~~d~ 107 (175)
+|.-|.|||.+||+..+--++++-+
T Consensus 13 iMnp~~KQfsnMGf~re~~e~~l~s 37 (72)
T d2dkla1 13 IMSRLIKQLTDMGFPREPAEEALKS 37 (72)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhhHHHHHHhhcCCcCCChHHhhhc
Confidence 5889999999999999988888754
No 6
>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=19.31 E-value=35 Score=17.49 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhchhhhh
Q psy16159 117 ESNKIIDQVLGEIGIEISG 135 (175)
Q Consensus 117 e~d~~v~qVl~E~gl~~~~ 135 (175)
|+=.+|.+|++|.|-.++.
T Consensus 2 evldlvrkvaeeng~s~ns 20 (36)
T d1u9pa1 2 EVLDLVRKVAEENGRSVNS 20 (36)
T ss_dssp HHHHHHHHHHHHHTCCHHH
T ss_pred cHHHHHHHHHHHcCcchhH
Confidence 4567889999999865543
No 7
>d1g99a2 c.55.1.2 (A:198-398) Acetate kinase {Archaeon Methanosarcina thermophila [TaxId: 2210]}
Probab=16.28 E-value=1.3e+02 Score=21.37 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=29.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy16159 3 LEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSI 44 (175)
Q Consensus 3 ~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv 44 (175)
++|-+++++||..+.-.+.--+-|++|++-.|...=-.++++
T Consensus 88 R~v~~~~~~Gd~~A~la~d~~~yri~k~Iga~~a~LggvDai 129 (201)
T d1g99a2 88 RDLDEAASKGNRKAELALEIFAYKVKKFIGEYSAVLNGADAV 129 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCEE
Confidence 467788888998888888888888888777665443333333
No 8
>d1saza2 c.55.1.2 (A:173-375) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]}
Probab=15.17 E-value=1.5e+02 Score=21.14 Aligned_cols=43 Identities=28% Similarity=0.268 Sum_probs=33.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHH
Q psy16159 3 LEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQ-GKVHSIG 45 (175)
Q Consensus 3 ~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~k-a~l~sv~ 45 (175)
.+|-++++.||..+.-.+.--+-|++|++-.|...= .++++|.
T Consensus 85 rev~~~~~~Gd~~A~lA~d~~~y~i~K~Iga~~a~L~G~vDaIv 128 (203)
T d1saza2 85 REVVRRIKQGDEWAKRVYRAMAYQIAKWIGKMAAVLKGEVDFIV 128 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSEEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 467889999999999888888889999887776433 3555554
No 9
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=14.89 E-value=10 Score=23.21 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=24.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q psy16159 4 EIKKAAKEGDKIAATILAKQLIQIRKQKTRTY 35 (175)
Q Consensus 4 ~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~ 35 (175)
++-.....|+.-+|+.+|++|=-.|+.+++.+
T Consensus 14 ~~l~~L~~~~~~tA~~LAk~Lg~~Kk~VNr~L 45 (70)
T d1sfua_ 14 KEVLSLNTNDYTTAISLSNRLKINKKKINQQL 45 (70)
T ss_dssp HHHHTSCTTCEECHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHhCCCHHHHHHHH
Confidence 34445567888899999999987888887755
No 10
>d2e1za2 c.55.1.2 (A:193-397) Propionate kinase {Salmonella typhimurium [TaxId: 90371]}
Probab=11.85 E-value=1.9e+02 Score=20.57 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=30.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy16159 3 LEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIG 45 (175)
Q Consensus 3 ~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~ 45 (175)
++|.++++.||..+.-.+.--+-|++|.+-.|...=-.++++.
T Consensus 88 R~l~~~~~~gd~~A~la~d~~~yri~k~Iga~~a~LggvDaiV 130 (205)
T d2e1za2 88 RVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLHRLDGII 130 (205)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCSSCCEEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 4677888888888888888888888877776655444444443
Done!