RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16159
(175 letters)
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP,
IST1, coiled coil, cytoplasm, lipoprotein, membrane,
myristate, phosphoprotein; 4.00A {Homo sapiens}
Length = 218
Score = 86.0 bits (212), Expect = 2e-21
Identities = 40/163 (24%), Positives = 91/163 (55%)
Query: 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
+ +K AAK+G K +LAK++I+ RK ++ YA++ ++S+ + K + +++A ++
Sbjct: 41 KRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSL 100
Query: 62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
+ + + MK M S++K +I A+ +E + + + + +EM+++ + M + + E+E+
Sbjct: 101 QKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEME 160
Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAE 164
ID++L EI GK + T + E + + ++ + E
Sbjct: 161 IDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEE 203
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein
transport; 2.80A {Homo sapiens} PDB: 3frv_A
Length = 179
Score = 82.5 bits (203), Expect = 2e-20
Identities = 37/136 (27%), Positives = 81/136 (59%)
Query: 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
+ +K AAK+G K +LAK++I+ RK ++ YA++ ++S+ + K + +++A ++
Sbjct: 41 KRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSL 100
Query: 62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
+ + + MK M S++K +I A+ +E + + + + +EM+++ + M + + E+E+
Sbjct: 101 QKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEME 160
Query: 122 IDQVLGEIGIEISGKM 137
ID++L EI GK
Sbjct: 161 IDRILFEITAGALGKA 176
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.011
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 27/111 (24%)
Query: 45 GIQNKTMG----SNIKMAEAMKNTAD--TMKNMN-SIMK-----PEQIAA--SAQEFQQG 90
G Q + MG K A+ + N AD SI+ P + ++ ++
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR- 1683
Query: 91 ITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAP 141
R N MI E + D +++ EI + +
Sbjct: 1684 -IRENY-SAMIFETIVD----------GKLKTEKIFKEINEHSTSYTFRSE 1722
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei
methyltransferase; cobalamin-independent, surface
entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A
3pph_A 3ppc_A
Length = 789
Score = 30.6 bits (69), Expect = 0.24
Identities = 19/134 (14%), Positives = 36/134 (26%), Gaps = 11/134 (8%)
Query: 4 EIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKN 63
I K D I+ R + + T + + I E +
Sbjct: 394 VIAKNVSGEDVSKQLEANAASIKARSESSITNDPKVQERLTTINEALATRKAAFPERLTE 453
Query: 64 TADTMKNMNSIM-------KPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQ 116
+ + I + +F +G +T E + ++ +E Q
Sbjct: 454 QKAKYNLPLFPTTTIGSFPQTKDIRINRNKFAKG----QITAEEYEAFINKEIETVVRFQ 509
Query: 117 ESNKIIDQVLGEIG 130
E + V GE
Sbjct: 510 EEIGLDVLVHGEPE 523
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein,
osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus
fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A
2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Length = 115
Score = 27.3 bits (61), Expect = 1.2
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 91 ITRMNMTDEMIDEALDDMLEG-SDDEQESNKIIDQVL 126
+TR+ + EM+ E + E + D +E N II+Q +
Sbjct: 75 LTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFI 111
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 27.5 bits (62), Expect = 2.1
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 90 GITRMNMTDEMIDEALDDMLE 110
GI+ + + E+ D+++
Sbjct: 108 GISTIALLPEVESAQWDEVIG 128
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1
PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 27.3 bits (61), Expect = 2.6
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 42 HSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMI 101
+G K G ++ K D M + +Q+ +FQ+ + M
Sbjct: 20 ADLGKNFKNQGIDVNPEAMAKGMQDAMSGAQLALTEQQMKDVLNKFQKDL--MAKRTAEF 77
Query: 102 DEALDDMLEGSDDEQESNK 120
++ D+ + NK
Sbjct: 78 NKKADENKVKGEAFLTENK 96
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 27.2 bits (61), Expect = 2.8
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 90 GITRMNMTDEMIDEALDDMLE 110
GI+ + D+ D+L+
Sbjct: 144 GISNQGEVVSLTDQQWSDILQ 164
>2r6a_C DNAG primase, helicase binding domain, replicative helicase;
replication, DNAB; 2.90A {Geobacillus
stearothermophilus} PDB: 2r6c_G 1z8s_A*
Length = 143
Score = 26.7 bits (59), Expect = 3.2
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 4 EIKKAAKEGDKIAATILAKQLIQIRKQ 30
E +A + D + A +AK++I+++K
Sbjct: 113 EKTEAERRKDFLTAARIAKEMIEMKKM 139
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas
palustris}
Length = 365
Score = 27.0 bits (60), Expect = 3.5
Identities = 7/62 (11%), Positives = 20/62 (32%)
Query: 62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
N + +K ++ + P++ A F + + D D+ + + +
Sbjct: 275 PNYDNALKLLSWRLDPKRAAQLTSTFPVALPSKVVFDAATDKNIARYWANNPENVAKAIE 334
Query: 122 ID 123
Sbjct: 335 WS 336
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 25.9 bits (57), Expect = 5.6
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 83 SAQEFQQGITRMNMTDEMIDEALDDM 108
+A EF +T + M+ EA + +
Sbjct: 120 NADEFAAWLTALGMSKAEAAEAFNQV 145
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 25.8 bits (57), Expect = 5.9
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 83 SAQEFQQGITRMNMTDEMIDEALDDM 108
S E+ + + M + D +
Sbjct: 112 SRDEYGIFFGMLGLDKTMAPASFDAI 137
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 26.0 bits (58), Expect = 6.6
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 90 GITRMNMTDEMIDEALDDMLEG 111
GI M+ D+ + +D L G
Sbjct: 111 GIAPMSAGDDGWHDVIDVNLTG 132
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 25.6 bits (57), Expect = 8.4
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 90 GITRMNMTDEMIDEALDDML 109
G+ E+ DE D ++
Sbjct: 114 GVLSWGRVWELTDEQWDTVI 133
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 25.5 bits (56), Expect = 8.5
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 42 HSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMI 101
S+G + ++ + + + +K E+I +E I
Sbjct: 31 ASLGERLHQEVPDLDLKALVDGLKQAYQGKPLALKQERIDQILREHDAAI--AQAETAGT 88
Query: 102 DEALDDMLEGSDDEQESNK 120
D + L+ K
Sbjct: 89 DAPTEAALKAERTFMAGEK 107
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH;
alpha-amylase inhibitors (AAI), lipid transfer (LT) and
SEED (SS) protein family; HET: MLR; 2.71A {Escherichia
coli}
Length = 500
Score = 25.6 bits (56), Expect = 9.7
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 3/129 (2%)
Query: 6 KKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKV-HSIGIQNKTMGSNIKMAEAMKNT 64
++ A T A + Q + ++ + + I + + +
Sbjct: 354 RQTVDAALAAAQTNAAARRCQSQLERANLRPCEQHLMQKIQRDEDSYERDPYSPSQDPYS 413
Query: 65 ADTMKNMN--SIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKII 122
S E+ EF+ M + I E D L+G EQ+ + +
Sbjct: 414 PSPYDRRGAGSSQHQERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKREL 473
Query: 123 DQVLGEIGI 131
+ + G+
Sbjct: 474 RNLPQQCGL 482
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold,
oxidoreductase; 2.20A {Caenorhabditis elegans}
Length = 460
Score = 25.7 bits (57), Expect = 9.7
Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 7/101 (6%)
Query: 16 AATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNK-TMGSNIKMAEAMKNTADTMKNMNSI 74
A LA Q + T + V+S+ I TMG + + + + N
Sbjct: 29 EAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRN-- 86
Query: 75 MKPEQI-AASAQEFQQGITRMNMTDEMIDEALDDMLEGSDD 114
++ + + + + D+ I++ L+ + D
Sbjct: 87 --EQRCKQELEVMYAREKSFKRLNDKRIEKIN-ANLKITSD 124
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.122 0.308
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,486,015
Number of extensions: 150120
Number of successful extensions: 510
Number of sequences better than 10.0: 1
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 50
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 54 (25.0 bits)