BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1616
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46222|RL11_DROME 60S ribosomal protein L11 OS=Drosophila melanogaster GN=RpL11 PE=1
SV=2
Length = 184
Score = 221 bits (562), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 126/198 (63%), Positives = 138/198 (69%), Gaps = 29/198 (14%)
Query: 37 VAKKGKKDKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-R 95
V KK K+D +KN MR++ IRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT R
Sbjct: 4 VTKKIKRDPAKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 63
Query: 96 SKG-RRNPGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKI 154
S G RRN K V + G K ++ + KV E EL N
Sbjct: 64 SFGIRRNE--------KIAVHCTVRGA---------KAEEILERGLKVREYELRREN--- 103
Query: 155 HKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIV 214
+GNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPG+NV HR+RK+G V
Sbjct: 104 -------FSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTV 156
Query: 215 GFQHRLTKEDAMKWFQTK 232
GFQHRLTKEDAMKWFQ K
Sbjct: 157 GFQHRLTKEDAMKWFQQK 174
>sp|P62914|RL11_RAT 60S ribosomal protein L11 OS=Rattus norvegicus GN=Rpl11 PE=1 SV=2
Length = 178
Score = 197 bits (501), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/188 (59%), Positives = 130/188 (69%), Gaps = 29/188 (15%)
Query: 47 KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRNPGE 104
+N MRE++IRKLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYT RS G RRN
Sbjct: 9 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNE-- 66
Query: 105 RASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHH 164
K V + G K ++ + KV E EL N
Sbjct: 67 ------KIAVHCTVRGA---------KAEEILEKGLKVREYELRKNN----------FSD 101
Query: 165 SGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKED 224
+GNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGF++A ++R+TG +G +HR++KE+
Sbjct: 102 TGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEE 161
Query: 225 AMKWFQTK 232
AM+WFQ K
Sbjct: 162 AMRWFQQK 169
>sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11 OS=Mus musculus GN=Rpl11 PE=1 SV=4
Length = 178
Score = 197 bits (501), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/188 (59%), Positives = 130/188 (69%), Gaps = 29/188 (15%)
Query: 47 KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRNPGE 104
+N MRE++IRKLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYT RS G RRN
Sbjct: 9 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNE-- 66
Query: 105 RASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHH 164
K V + G K ++ + KV E EL N
Sbjct: 67 ------KIAVHCTVRGA---------KAEEILEKGLKVREYELRKNN----------FSD 101
Query: 165 SGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKED 224
+GNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGF++A ++R+TG +G +HR++KE+
Sbjct: 102 TGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEE 161
Query: 225 AMKWFQTK 232
AM+WFQ K
Sbjct: 162 AMRWFQQK 169
>sp|P62913|RL11_HUMAN 60S ribosomal protein L11 OS=Homo sapiens GN=RPL11 PE=1 SV=2
Length = 178
Score = 197 bits (501), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/188 (59%), Positives = 130/188 (69%), Gaps = 29/188 (15%)
Query: 47 KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRNPGE 104
+N MRE++IRKLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYT RS G RRN
Sbjct: 9 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNE-- 66
Query: 105 RASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHH 164
K V + G K ++ + KV E EL N
Sbjct: 67 ------KIAVHCTVRGA---------KAEEILEKGLKVREYELRKNN----------FSD 101
Query: 165 SGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKED 224
+GNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGF++A ++R+TG +G +HR++KE+
Sbjct: 102 TGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEE 161
Query: 225 AMKWFQTK 232
AM+WFQ K
Sbjct: 162 AMRWFQQK 169
>sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11 OS=Chinchilla lanigera GN=RPL11 PE=2 SV=3
Length = 178
Score = 197 bits (501), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/188 (59%), Positives = 130/188 (69%), Gaps = 29/188 (15%)
Query: 47 KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRNPGE 104
+N MRE++IRKLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYT RS G RRN
Sbjct: 9 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNE-- 66
Query: 105 RASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHH 164
K V + G K ++ + KV E EL N
Sbjct: 67 ------KIAVHCTVRGA---------KAEEILEKGLKVREYELRKNN----------FSD 101
Query: 165 SGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKED 224
+GNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGF++A ++R+TG +G +HR++KE+
Sbjct: 102 TGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEE 161
Query: 225 AMKWFQTK 232
AM+WFQ K
Sbjct: 162 AMRWFQQK 169
>sp|Q3T087|RL11_BOVIN 60S ribosomal protein L11 OS=Bos taurus GN=RPL11 PE=2 SV=3
Length = 178
Score = 197 bits (501), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/188 (59%), Positives = 130/188 (69%), Gaps = 29/188 (15%)
Query: 47 KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRNPGE 104
+N MRE++IRKLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYT RS G RRN
Sbjct: 9 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNE-- 66
Query: 105 RASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHH 164
K V + G K ++ + KV E EL N
Sbjct: 67 ------KIAVHCTVRGA---------KAEEILEKGLKVREYELRKNN----------FSD 101
Query: 165 SGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKED 224
+GNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGF++A ++R+TG +G +HR++KE+
Sbjct: 102 TGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEE 161
Query: 225 AMKWFQTK 232
AM+WFQ K
Sbjct: 162 AMRWFQQK 169
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 OS=Ictalurus punctatus GN=rpl11 PE=2 SV=3
Length = 178
Score = 197 bits (501), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 113/191 (59%), Positives = 130/191 (68%), Gaps = 29/191 (15%)
Query: 44 DKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRN 101
+K +N MRE++IRKLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYT RS G RRN
Sbjct: 6 EKKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRN 65
Query: 102 PGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLC 161
K V + G K ++ + KV E EL N
Sbjct: 66 E--------KIAVHCTVRGA---------KAEEILEKGLKVREYELRKNN---------- 98
Query: 162 LHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLT 221
SGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGF++A ++RK G +GF+HR+
Sbjct: 99 FSDSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGRIGFKHRIR 158
Query: 222 KEDAMKWFQTK 232
K +AM+WFQ K
Sbjct: 159 KREAMRWFQQK 169
>sp|Q29205|RL11_PIG 60S ribosomal protein L11 OS=Sus scrofa GN=RPL11 PE=2 SV=3
Length = 178
Score = 197 bits (501), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/188 (59%), Positives = 130/188 (69%), Gaps = 29/188 (15%)
Query: 47 KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRNPGE 104
+N MRE++IRKLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYT RS G RRN
Sbjct: 9 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNE-- 66
Query: 105 RASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHH 164
K V + G K ++ + KV E EL N
Sbjct: 67 ------KIAVHCTVRGA---------KAEEILEKGLKVREYELRKNN----------FSD 101
Query: 165 SGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKED 224
+GNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGF++A ++R+TG +G +HR++KE+
Sbjct: 102 TGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEE 161
Query: 225 AMKWFQTK 232
AM+WFQ K
Sbjct: 162 AMRWFQQK 169
>sp|Q5RC11|RL11_PONAB 60S ribosomal protein L11 OS=Pongo abelii GN=RPL11 PE=2 SV=3
Length = 178
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/188 (58%), Positives = 129/188 (68%), Gaps = 29/188 (15%)
Query: 47 KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRNPGE 104
+N MRE++IRKLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYT RS G RRN
Sbjct: 9 ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNE-- 66
Query: 105 RASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHH 164
K V + G K ++ + KV E EL N
Sbjct: 67 ------KIAVHCTVRGA---------KAEEILEKGLKVREYELRKNN----------FSD 101
Query: 165 SGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKED 224
+GNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGF++ ++R+TG +G +HR++KE+
Sbjct: 102 TGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSITDKKRRTGCIGAKHRISKEE 161
Query: 225 AMKWFQTK 232
AM+WFQ K
Sbjct: 162 AMRWFQQK 169
>sp|P16168|RL11_DICDI 60S ribosomal protein L11 OS=Dictyostelium discoideum GN=rpl11 PE=1
SV=2
Length = 202
Score = 184 bits (466), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 129/216 (59%), Gaps = 51/216 (23%)
Query: 28 TKAVDPAKPV-AKKGKKDKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQP 86
KA + PV KK KKD NVMR ++I KL LNICVGESGDRL RAAKVLEQLTGQ P
Sbjct: 15 VKAPEATTPVETKKSKKD---NVMRGLRIEKLVLNICVGESGDRLVRAAKVLEQLTGQTP 71
Query: 87 VFSKARYT-RSKG-RRNP---------GERASSFMKPLVVLALPGMYLFYKYNQYKQQQQ 135
V+SKARYT RS RRN GE+A+ ++ +
Sbjct: 72 VYSKARYTVRSFNIRRNEQIAAHVTVRGEKAAEILEKGL--------------------- 110
Query: 136 EQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYV 195
KV E EL N G+FGFGIQEHIDLGIKYDPSIGIYG+DF+V
Sbjct: 111 -----KVREFELRARN----------FSTQGSFGFGIQEHIDLGIKYDPSIGIYGMDFFV 155
Query: 196 VLGRPGFNVAHRRRKTGIVGFQHRLTKEDAMKWFQT 231
VL RPGF VAH++R VGFQH++ KEDA+ WF+T
Sbjct: 156 VLSRPGFRVAHKKRAGAKVGFQHKIGKEDAVNWFKT 191
>sp|Q0DK10|RL11_ORYSJ 60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11
PE=2 SV=1
Length = 182
Score = 181 bits (459), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/190 (56%), Positives = 122/190 (64%), Gaps = 29/190 (15%)
Query: 45 KSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRNP 102
K N MRE+K++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYT RS G RRN
Sbjct: 6 KQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRN- 64
Query: 103 GERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCL 162
E+ + + + V M L ++ KV E EL N
Sbjct: 65 -EKIACY---VTVRGEKAMQLL------------ESGLKVKEYELLRRN----------F 98
Query: 163 HHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTK 222
+G FGFGIQEHIDLGIKYDPS GIYG+DFYVVL R G+ VA RRR VG QHR+TK
Sbjct: 99 SETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTK 158
Query: 223 EDAMKWFQTK 232
EDAMKWFQ K
Sbjct: 159 EDAMKWFQVK 168
>sp|A2YDY2|RL11_ORYSI 60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11
PE=2 SV=2
Length = 182
Score = 181 bits (459), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/190 (56%), Positives = 122/190 (64%), Gaps = 29/190 (15%)
Query: 45 KSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRNP 102
K N MRE+K++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYT RS G RRN
Sbjct: 6 KQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRN- 64
Query: 103 GERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCL 162
E+ + + + V M L ++ KV E EL N
Sbjct: 65 -EKIACY---VTVRGEKAMQLL------------ESGLKVKEYELLRRN----------F 98
Query: 163 HHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTK 222
+G FGFGIQEHIDLGIKYDPS GIYG+DFYVVL R G+ VA RRR VG QHR+TK
Sbjct: 99 SETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTK 158
Query: 223 EDAMKWFQTK 232
EDAMKWFQ K
Sbjct: 159 EDAMKWFQVK 168
>sp|P42795|RL111_ARATH 60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1
SV=2
Length = 182
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/190 (55%), Positives = 123/190 (64%), Gaps = 29/190 (15%)
Query: 45 KSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRNP 102
K N MR++K++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYT RS G RRN
Sbjct: 6 KLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRN- 64
Query: 103 GERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCL 162
E+ + + + V M L ++ KV E EL N
Sbjct: 65 -EKIACY---VTVRGEKAMQLL------------ESGLKVKEYELLRRN----------F 98
Query: 163 HHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTK 222
+G FGFGIQEHIDLGIKYDPS GIYG+DFYVVL RPG+ VA RRR VG QHR+TK
Sbjct: 99 SDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTK 158
Query: 223 EDAMKWFQTK 232
+DAMKWFQ K
Sbjct: 159 DDAMKWFQVK 168
>sp|Q94300|RL11_CAEEL 60S ribosomal protein L11 OS=Caenorhabditis elegans GN=rpl-11.1
PE=3 SV=1
Length = 196
Score = 179 bits (454), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/191 (53%), Positives = 121/191 (63%), Gaps = 25/191 (13%)
Query: 42 KKDKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRN 101
++ K +NVMRE+KI+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYT R
Sbjct: 11 REKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTV----RT 66
Query: 102 PGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLC 161
G R + + + P K ++ + KV E EL N
Sbjct: 67 FGIRRNEKIAVHCTVRGP-----------KAEEILEKGLKVKEYELFKEN---------- 105
Query: 162 LHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLT 221
+GNFGFG+QEHIDLGIKYDP IGIYG+DFYVVL R G V+ RRR G +G HR+
Sbjct: 106 FSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVD 165
Query: 222 KEDAMKWFQTK 232
KE+ +KWFQ K
Sbjct: 166 KEETIKWFQQK 176
>sp|P42794|RL112_ARATH 60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2
SV=2
Length = 182
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/190 (55%), Positives = 123/190 (64%), Gaps = 29/190 (15%)
Query: 45 KSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRNP 102
K N MR++K++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYT RS G RRN
Sbjct: 6 KLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRN- 64
Query: 103 GERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCL 162
E+ + + + V M L ++ KV E EL N
Sbjct: 65 -EKIACY---VTVRGEKAMQLL------------ESGLKVKEYELLRRN----------F 98
Query: 163 HHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTK 222
+G FGFGIQEHIDLGIKYDPS GIYG+DFYVVL RPG+ VA RRR VG QHR+TK
Sbjct: 99 SDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTK 158
Query: 223 EDAMKWFQTK 232
+DAMKWFQ K
Sbjct: 159 DDAMKWFQVK 168
>sp|P46287|RL11_MEDSA 60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1
Length = 181
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/190 (55%), Positives = 121/190 (63%), Gaps = 29/190 (15%)
Query: 45 KSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRNP 102
K N MRE+K++KL LNI VGESGDRLTRAAKVLEQL+GQ PVFSKARYT RS G RRN
Sbjct: 6 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRN- 64
Query: 103 GERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCL 162
E+ + ++ K Q ++ KV E EL N
Sbjct: 65 -EKIACYVT---------------VRGDKAMQLLESGLKVKEYELLRRN----------F 98
Query: 163 HHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTK 222
+G FGFGIQEHIDLGIKYDPS GIYG+DF+VVL RPG+ V RRR VG QHR+TK
Sbjct: 99 SDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTK 158
Query: 223 EDAMKWFQTK 232
+DAMKWFQ K
Sbjct: 159 DDAMKWFQVK 168
>sp|Q10157|RL11_SCHPO 60S ribosomal protein L11 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl11a PE=1 SV=1
Length = 174
Score = 170 bits (430), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 95/189 (50%), Positives = 119/189 (62%), Gaps = 25/189 (13%)
Query: 44 DKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPG 103
+K++N M+E++I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT R G
Sbjct: 3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTI----RRFG 58
Query: 104 ERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLH 163
R + + V + P K ++ + KV E EL N
Sbjct: 59 IRRNEKIACHVTVRGP-----------KAEEILERGLKVKEYELKKRN----------FS 97
Query: 164 HSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKE 223
+GNFGFGIQEHIDLGIKYDPSIGIYG+DFYVV+ RPG VA R+ + G VG+ H++ E
Sbjct: 98 ATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAE 157
Query: 224 DAMKWFQTK 232
D + WF+ K
Sbjct: 158 DTINWFKQK 166
>sp|Q7RVN0|RL11_NEUCR 60S ribosomal protein L11 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-11
PE=3 SV=2
Length = 174
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/189 (49%), Positives = 118/189 (62%), Gaps = 25/189 (13%)
Query: 45 KSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGE 104
K++N MRE++I+KL LNICVGESGDRLTRAAKVLEQL+GQ PV+SKARYT R G
Sbjct: 6 KAQNPMRELRIQKLVLNICVGESGDRLTRAAKVLEQLSGQTPVYSKARYTV----RTFGI 61
Query: 105 RASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHH 164
R + + V + P K ++ + KV E EL N
Sbjct: 62 RRNEKISVHVTVRGP-----------KAEEILERGLKVKEYELRKRN----------FSE 100
Query: 165 SGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKED 224
+GNFGFGI EHIDLGIKYDP IGIYG+DFY + RPG V+ RRR VG HR+T++D
Sbjct: 101 TGNFGFGISEHIDLGIKYDPGIGIYGMDFYCCMTRPGERVSRRRRAKSRVGATHRITRDD 160
Query: 225 AMKWFQTKM 233
+KWF+++
Sbjct: 161 TVKWFKSRF 169
>sp|Q6FTK4|RL11_CANGA 60S ribosomal protein L11 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPL11
PE=3 SV=1
Length = 174
Score = 168 bits (426), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/186 (50%), Positives = 118/186 (63%), Gaps = 25/186 (13%)
Query: 45 KSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGE 104
K++NVMRE+KI KL LNI VGESGDRLTRA+KVLEQL+GQ PV SKARYT R G
Sbjct: 4 KTQNVMRELKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTV----RTFGI 59
Query: 105 RASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHH 164
R + + V + P K ++ + KV E +L + N
Sbjct: 60 RRNEKIAVHVTVRGP-----------KAEEILERGLKVKEYQLRNRN----------FST 98
Query: 165 SGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKED 224
+GNFGFGIQEHIDLGIKYDPSIGI+G+DFY+V+GRPG +A R+R VG H+ +KED
Sbjct: 99 TGNFGFGIQEHIDLGIKYDPSIGIFGMDFYIVMGRPGNRIARRKRCRATVGNSHKTSKED 158
Query: 225 AMKWFQ 230
+ WF+
Sbjct: 159 TIAWFK 164
>sp|P42922|RL11_LEICH 60S ribosomal protein L11 OS=Leishmania chagasi GN=RPL11 PE=2 SV=1
Length = 188
Score = 168 bits (425), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/190 (51%), Positives = 118/190 (62%), Gaps = 29/190 (15%)
Query: 43 KDKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RR 100
+ K+ N MRE+ ++KLC+NICVGESGDRLTRA+KVLEQL Q PV S+AR T R+ G RR
Sbjct: 4 ESKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRR 63
Query: 101 NPGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSL 160
N K V + G K ++ + KV E EL N
Sbjct: 64 NE--------KIAVHCTVRGK---------KAEELLEKGLKVKEFELKSYN--------- 97
Query: 161 CLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRL 220
+G+FGFGI EHIDLGIKYDPS GIYG+DFYVVLGR G VAHR+RK VG H +
Sbjct: 98 -FSDTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHV 156
Query: 221 TKEDAMKWFQ 230
TKE+AMKWF+
Sbjct: 157 TKEEAMKWFE 166
>sp|P48157|RL11_LEIMA 60S ribosomal protein L11 OS=Leishmania major GN=RPL11 PE=3 SV=1
Length = 188
Score = 167 bits (424), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/190 (51%), Positives = 118/190 (62%), Gaps = 29/190 (15%)
Query: 43 KDKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RR 100
+ K+ N MRE+ ++KLC+NICVGESGDRLTRA+KVLEQL Q PV S+AR T R+ G RR
Sbjct: 4 ESKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRR 63
Query: 101 NPGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSL 160
N K V + G K ++ + KV E EL N
Sbjct: 64 NE--------KIAVHCTVRGK---------KAEELLEKGLKVKEFELKSYN--------- 97
Query: 161 CLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRL 220
+G+FGFGI EHIDLGIKYDPS GIYG+DFYVVLGR G VAHR+RK VG H +
Sbjct: 98 -FADTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHV 156
Query: 221 TKEDAMKWFQ 230
TKE+AMKWF+
Sbjct: 157 TKEEAMKWFE 166
>sp|Q758S7|RL11_ASHGO 60S ribosomal protein L11 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL11 PE=3 SV=1
Length = 174
Score = 167 bits (423), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 95/186 (51%), Positives = 116/186 (62%), Gaps = 25/186 (13%)
Query: 45 KSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGE 104
K++N MRE+KI KL LNI VGESGDRLTRA+KVLEQL+GQ PV SKARYT R G
Sbjct: 4 KAQNPMRELKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVHSKARYTV----RTFGI 59
Query: 105 RASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHH 164
R + + V + P K ++ + KV E +L N
Sbjct: 60 RRNEKIAVHVTIRGP-----------KSEEILERGLKVKEYQLRTKN----------FSE 98
Query: 165 SGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKED 224
+GNFGFGIQEHIDLGIKYDPSIGIYG+DFYVV+GRPG V+ R+R VG H+ +KED
Sbjct: 99 TGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMGRPGGRVSRRKRCRSTVGNSHKTSKED 158
Query: 225 AMKWFQ 230
+ WF+
Sbjct: 159 TIAWFK 164
>sp|Q962U2|RL11_SPOFR 60S ribosomal protein L11 OS=Spodoptera frugiperda GN=RpL11 PE=2
SV=1
Length = 195
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/195 (55%), Positives = 118/195 (60%), Gaps = 40/195 (20%)
Query: 46 SKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRNPG 103
SKNVMR + IRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT RS G RRN
Sbjct: 23 SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE- 81
Query: 104 ERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLH 163
K V + G K ++ + KV E EL N
Sbjct: 82 -------KIAVHCTVRGA---------KAEEILERGLKVREYELRRDN----------FS 115
Query: 164 HSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTG------IVGFQ 217
+GNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLG ++ + IV
Sbjct: 116 ATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGPTRIQCTTQKTQDWQGWIPPIV--- 172
Query: 218 HRLTKEDAMKWFQTK 232
LTKEDAMKWFQ K
Sbjct: 173 --LTKEDAMKWFQQK 185
>sp|P0C0W9|RL11A_YEAST 60S ribosomal protein L11-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL11A PE=1 SV=2
Length = 174
Score = 163 bits (413), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 115/188 (61%), Gaps = 25/188 (13%)
Query: 45 KSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGE 104
K++N MR++KI KL LNI VGESGDRLTRA+KVLEQL+GQ PV SKARYT R G
Sbjct: 4 KAQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTV----RTFGI 59
Query: 105 RASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHH 164
R + + V + P K ++ + KV E +L N
Sbjct: 60 RRNEKIAVHVTVRGP-----------KAEEILERGLKVKEYQLRDRN----------FSA 98
Query: 165 SGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKED 224
+GNFGFGI EHIDLGIKYDPSIGI+G+DFYVV+ RPG V R+R G VG H+ TKED
Sbjct: 99 TGNFGFGIDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKED 158
Query: 225 AMKWFQTK 232
+ WF+ K
Sbjct: 159 TVSWFKQK 166
>sp|Q3E757|RL11B_YEAST 60S ribosomal protein L11-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL11B PE=1 SV=3
Length = 174
Score = 163 bits (413), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 115/188 (61%), Gaps = 25/188 (13%)
Query: 45 KSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGE 104
K++N MR++KI KL LNI VGESGDRLTRA+KVLEQL+GQ PV SKARYT R G
Sbjct: 4 KAQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTV----RTFGI 59
Query: 105 RASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHH 164
R + + V + P K ++ + KV E +L N
Sbjct: 60 RRNEKIAVHVTVRGP-----------KAEEILERGLKVKEYQLRDRN----------FSA 98
Query: 165 SGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKED 224
+GNFGFGI EHIDLGIKYDPSIGI+G+DFYVV+ RPG V R+R G VG H+ TKED
Sbjct: 99 TGNFGFGIDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKED 158
Query: 225 AMKWFQTK 232
+ WF+ K
Sbjct: 159 TVSWFKQK 166
>sp|P24119|RL11_TETTH 60S ribosomal protein L11 OS=Tetrahymena thermophila GN=RPL11 PE=1
SV=1
Length = 172
Score = 147 bits (371), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/192 (50%), Positives = 119/192 (61%), Gaps = 29/192 (15%)
Query: 44 DKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRN 101
DK +N MREVKI KL +N CVGESGD+LT+AAKVL+ L+GQ+PVFS+ARYT RS G +RN
Sbjct: 3 DKKENKMREVKIAKLVINCCVGESGDKLTKAAKVLKDLSGQEPVFSRARYTIRSFGIKRN 62
Query: 102 PGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLC 161
K V + + G K + KV E EL N
Sbjct: 63 E--------KMAVHVTIRG---------DKARDILTRGLKVKEMELRKKN---------- 95
Query: 162 LHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLT 221
++GNFGFGIQEHIDLG+KYDPS GI+G+DFYVVL RPG VA RRR T VG ++
Sbjct: 96 FSNTGNFGFGIQEHIDLGMKYDPSTGIFGMDFYVVLERPGTRVARRRRATSRVGNNQMIS 155
Query: 222 KEDAMKWFQTKM 233
KE+ + WF+T+
Sbjct: 156 KEECINWFKTEF 167
>sp|Q8SSG9|RL11_ENCCU 60S ribosomal protein L11 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPL11 PE=1 SV=1
Length = 165
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 108/180 (60%), Gaps = 25/180 (13%)
Query: 50 MREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGERASSF 109
MRE+ I+KL ++IC ESG +L RAAKVLEQLTGQ+PV SKAR T RN G R +
Sbjct: 1 MREISIKKLSIHICARESGAKLDRAAKVLEQLTGQKPVTSKARMT----IRNFGIRRNE- 55
Query: 110 MKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFG 169
K V + + G +K E L K ++ + C ++G FG
Sbjct: 56 -KIAVHVNVSG-------------------KKAYELLNTALRVKEYELKESCFSNNGCFG 95
Query: 170 FGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDAMKWF 229
FGI+EHIDLG+KYDP+IGI+G+DF+V+L RPG V+ R+R VG + R+ EDA KWF
Sbjct: 96 FGIEEHIDLGLKYDPNIGIFGMDFFVILARPGDRVSKRKRCKSRVGNKQRVYAEDAKKWF 155
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 1 MREVKIRKLCLNICVGESGDRLTRAAKT-KAVDPAKPVAKKGK 42
MRE+ I+KL ++IC ESG +L RAAK + + KPV K +
Sbjct: 1 MREISIKKLSIHICARESGAKLDRAAKVLEQLTGQKPVTSKAR 43
>sp|P50881|RL11_CHLRE 60S ribosomal protein L11 OS=Chlamydomonas reinhardtii GN=RPL11
PE=2 SV=1
Length = 170
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 116/183 (63%), Gaps = 29/183 (15%)
Query: 50 MREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRNPGERAS 107
MRE++I KL LNI V ESGDRL +AAKVLEQLT Q PV+ +AR+T RS RRN E+ S
Sbjct: 1 MREIRISKLVLNIAVAESGDRLQKAAKVLEQLTSQVPVYGRARFTVRSFAIRRN--EKIS 58
Query: 108 SFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGN 167
+ + + G ++ + +R + +E + + + +GN
Sbjct: 59 CY------VTVRG-----------EKAYDLVKRGLAVKEFELIRKN--------FSDTGN 93
Query: 168 FGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDAMK 227
FGFGIQEHIDLG+KYDPS GIYG+DFYV L R G+ VA RR++ VG +H++TKEDA+K
Sbjct: 94 FGFGIQEHIDLGLKYDPSTGIYGMDFYVCLERRGYRVARRRKQKAHVGVKHKVTKEDAIK 153
Query: 228 WFQ 230
WFQ
Sbjct: 154 WFQ 156
>sp|Q5JJG1|RL5_PYRKO 50S ribosomal protein L5P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl5p PE=3 SV=1
Length = 183
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 107/184 (58%), Gaps = 26/184 (14%)
Query: 44 DKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPG 103
D + MR+ +I K+ +NI VGESG+RLT+A +LEQL GQ+P+ +A+ T R+ G
Sbjct: 11 DWEAHPMRKPRIAKVTINIGVGESGERLTKAETMLEQLVGQKPIRRRAKQTN----RDFG 66
Query: 104 ERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLH 163
R + V L Y ++ +R L+ +++K+ KA + H
Sbjct: 67 IRRGEPIAVKVTLRGEKAY------------------QMLDRLLEAVDRKL-KASNFDEH 107
Query: 164 HSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTK 222
GNF FGIQEHI++ G++YDP IGI+G+D V L RPGF VA R+R+ + +H+LTK
Sbjct: 108 --GNFCFGIQEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVAKRKRQRRKIPTKHKLTK 165
Query: 223 EDAM 226
E+ +
Sbjct: 166 EEGI 169
>sp|Q94793|RL11_TOXCA 60S ribosomal protein L11 (Fragment) OS=Toxocara canis GN=RPL11
PE=2 SV=1
Length = 125
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 86/142 (60%), Gaps = 29/142 (20%)
Query: 42 KKDKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-R 99
++ K++NVMRE+KI+KLCLNICVGE GDRLTRAAKVLEQLTGQ PVFSKARYT R+ G R
Sbjct: 11 REKKARNVMRELKIQKLCLNICVGEFGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIR 70
Query: 100 RNPGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQS 159
RN K V + G K ++ + KV E EL N
Sbjct: 71 RNE--------KIAVHCTVRGP---------KAEEILEKGLKVKEYELYKEN-------- 105
Query: 160 LCLHHSGNFGFGIQEHIDLGIK 181
+GNFG G+QEHIDLGIK
Sbjct: 106 --FSDTGNFGLGVQEHIDLGIK 125
>sp|Q9UX93|RL5_SULSO 50S ribosomal protein L5P OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl5p PE=3 SV=1
Length = 182
Score = 107 bits (267), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 107/187 (57%), Gaps = 28/187 (14%)
Query: 46 SKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGE 104
S+N MR+VK+ K+ +NI +GESGDRL +A ++L++LTG +PV++ ++ T R G R E
Sbjct: 12 SQNPMRKVKLSKVTVNIGLGESGDRLQKAYQLLQELTGAKPVYTISKKTIREFGIRKGQE 71
Query: 105 RASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHH 164
V + L G Q E+ RKV L+ + ++ K+
Sbjct: 72 IG-------VKVTLRG------------AQAEEFLRKV----LEAIGYRLKKS---SFDD 105
Query: 165 SGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKE 223
GN FGI EH+ L G +YDP IGI+G+D + L R G+ ++ RRRK + +HR+TKE
Sbjct: 106 YGNVSFGIAEHVILPGARYDPEIGIFGMDIAITLERAGYRISRRRRKKAKIPKRHRVTKE 165
Query: 224 DAMKWFQ 230
+AM++ +
Sbjct: 166 EAMEFLR 172
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 1 MREVKIRKLCLNICVGESGDRLTRAAK-TKAVDPAKPVAKKGKKDKSKNVMREVKIRK 57
MR+VK+ K+ +NI +GESGDRL +A + + + AKPV SK +RE IRK
Sbjct: 16 MRKVKLSKVTVNIGLGESGDRLQKAYQLLQELTGAKPVY-----TISKKTIREFGIRK 68
>sp|P54040|RL5_METJA 50S ribosomal protein L5P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl5p PE=3 SV=1
Length = 190
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 101/196 (51%), Gaps = 45/196 (22%)
Query: 47 KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTR-SKGRRNP--- 102
KN M + +I K+ +N VGESGDRLT+ A+V+E+LTGQ+P+ ++A+ T S G R
Sbjct: 9 KNPMLKPRIEKVVVNFGVGESGDRLTKGAQVIEELTGQKPIRTRAKQTNPSFGIRKKLPI 68
Query: 103 -------GERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIH 155
G++A F+K N ++ Q+E
Sbjct: 69 GLKVTLRGKKAEEFLK----------------NAFEAFQKEGK----------------- 95
Query: 156 KAQSLCLHHSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIV 214
K GNF FGI EHID G KYDP IGI+G+D V L RPGF V R+R +
Sbjct: 96 KLYDYSFDDYGNFSFGIHEHIDFPGQKYDPMIGIFGMDVCVTLERPGFRVKRRKRCRAKI 155
Query: 215 GFQHRLTKEDAMKWFQ 230
+HRLT+E+A+++ +
Sbjct: 156 PRRHRLTREEAIEFIE 171
>sp|Q74N79|RL5_NANEQ 50S ribosomal protein L5P OS=Nanoarchaeum equitans (strain Kin4-M)
GN=rpl5p PE=3 SV=1
Length = 169
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 106/185 (57%), Gaps = 26/185 (14%)
Query: 50 MREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGERASSF 109
MR+++I K+ LNI VGESG++L +A ++L++LTGQ+PV +KA+ + PG
Sbjct: 5 MRKIRIEKVTLNIGVGESGEKLDKAYELLKRLTGQKPVKTKAKVRVEQWHIRPG------ 58
Query: 110 MKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFG 169
+ V + L G E+ + + E+ L ++ KI KA S FG
Sbjct: 59 LPIGVKVTLRG---------------EKAYKILKEKLLPAVDFKI-KASSFT---DRGFG 99
Query: 170 FGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDAMKW 228
FGI E+I + G+KYDP +G+ GL+ YV L RPG+ V RR K VG +HRL KE+ +KW
Sbjct: 100 FGIPEYIMIPGMKYDPELGLIGLEAYVTLERPGYRVERRRIKRSKVGSRHRLNKEEIIKW 159
Query: 229 FQTKM 233
Q ++
Sbjct: 160 AQEEL 164
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 1 MREVKIRKLCLNICVGESGDRLTRAAK-TKAVDPAKPVAKKGK 42
MR+++I K+ LNI VGESG++L +A + K + KPV K K
Sbjct: 5 MRKIRIEKVTLNIGVGESGEKLDKAYELLKRLTGQKPVKTKAK 47
>sp|P41202|RL5_SULAC 50S ribosomal protein L5P OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rpl5p PE=3 SV=1
Length = 178
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 106/187 (56%), Gaps = 26/187 (13%)
Query: 45 KSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGE 104
K +NVMR V + K+ +NI VGESG+RL +A +++++LTG +PV++K R K R G
Sbjct: 7 KKENVMRRVVLDKVTVNIGVGESGERLQKAYQLVQELTGVKPVYTKGR----KSIREFGV 62
Query: 105 RASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHH 164
R + P+ V A ++Q + +KV L +N ++ ++ +
Sbjct: 63 RKGA---PIGVKA-----------TLRRQAAVEFLKKV----LPAVNFRLKQS---SFDN 101
Query: 165 SGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKE 223
GN FGI EH+ + G +YDP IGI+G+D + L RPG+ R+RK + +HR+TKE
Sbjct: 102 YGNVSFGIAEHVLIPGTRYDPEIGIFGMDVAITLVRPGYRTMKRKRKKASIPRRHRVTKE 161
Query: 224 DAMKWFQ 230
+A+ + +
Sbjct: 162 EAINFMK 168
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 1 MREVKIRKLCLNICVGESGDRLTRAAK-TKAVDPAKPVAKKGKKDKSKNVMREVKIRK 57
MR V + K+ +NI VGESG+RL +A + + + KPV KG+K +RE +RK
Sbjct: 12 MRRVVLDKVTVNIGVGESGERLQKAYQLVQELTGVKPVYTKGRKS-----IREFGVRK 64
>sp|Q8U012|RL5_PYRFU 50S ribosomal protein L5P OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rpl5p PE=1 SV=1
Length = 186
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 104/187 (55%), Gaps = 26/187 (13%)
Query: 44 DKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPG 103
D + MR +I K+ +NI VGESG+RLT+A +L+QLTGQ+P+ KA+ T R+ G
Sbjct: 14 DWEAHPMRRPRIEKVTINIGVGESGERLTKAEIMLQQLTGQKPIRRKAKKTN----RDFG 69
Query: 104 ERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLH 163
R + V L P Y K R L ++ ++ KA S H
Sbjct: 70 IRRGEPIAVKVTLRGPKAYELLK------------------RLLAAVDNRL-KASSFDEH 110
Query: 164 HSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTK 222
GN FGI+EHI++ G++YDP IGI+G+D V L RPGF VA R+RK + +H+LTK
Sbjct: 111 --GNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTK 168
Query: 223 EDAMKWF 229
E+ M +
Sbjct: 169 EEGMVYM 175
>sp|Q9V1U9|RL5_PYRAB 50S ribosomal protein L5P OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rpl5p PE=3 SV=1
Length = 188
Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 104/187 (55%), Gaps = 26/187 (13%)
Query: 44 DKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPG 103
D + MR+ +I K+ +NI VGESG+RLT+A +LE+LTGQ+P+ KA+ T R+ G
Sbjct: 14 DWEAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTN----RDFG 69
Query: 104 ERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLH 163
R + V L P Y K R L ++ ++ KA S H
Sbjct: 70 IRRGEPIAVKVTLRGPKAYEMLK------------------RLLAAVDNRL-KASSFDEH 110
Query: 164 HSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTK 222
GN FGI EHI++ G++YDP IGI+G+D V L RPGF VA R+RK + +H+LTK
Sbjct: 111 --GNVCFGIDEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTK 168
Query: 223 EDAMKWF 229
E+ M +
Sbjct: 169 EEGMVYM 175
>sp|O59431|RL5_PYRHO 50S ribosomal protein L5P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl5p PE=3 SV=1
Length = 188
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 105/187 (56%), Gaps = 26/187 (13%)
Query: 44 DKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPG 103
D + MR +I+K+ +NI VGESG+RLT+A +L++LTGQ+P+ KA+ T R+ G
Sbjct: 14 DWEAHPMRRPRIQKVTINIGVGESGERLTKAEIMLQRLTGQKPIRRKAKKTN----RDFG 69
Query: 104 ERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLH 163
R + V L P Y K R L ++ K+ KA S H
Sbjct: 70 IRRGEPIAVKVTLRGPKAYEMLK------------------RLLAAVDYKL-KASSFDEH 110
Query: 164 HSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTK 222
GN FGI+EHI++ G++YDP IGI+G+D V L RPGF VA R+RK + +H+LTK
Sbjct: 111 --GNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRARIPTRHKLTK 168
Query: 223 EDAMKWF 229
E+ M +
Sbjct: 169 EEGMLYM 175
>sp|Q9YF87|RL5_AERPE 50S ribosomal protein L5P OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl5p PE=3
SV=2
Length = 192
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 27/182 (14%)
Query: 47 KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGERA 106
++ MR +I K+ +NI +G+SG+RL RAA+VLE+LTGQ+PVF KA+ T R G R
Sbjct: 24 RSPMRRPRIVKVTVNISIGQSGERLQRAAEVLEELTGQKPVFRKAKRTI----RAFGVRK 79
Query: 107 SSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSG 166
+ +V L F K R LD + H+ ++ + G
Sbjct: 80 GENIAVMVTLRGEKALNFLK------------------RALDAVG---HRIKTSSIDEHG 118
Query: 167 NFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAH-RRRKTGIVGFQHRLTKED 224
N FGI+EHI + G+KYDP +GI G+D + + RPG + RR++ G + +HR+T+E+
Sbjct: 119 NVSFGIEEHILIPGVKYDPRVGILGMDVAITIQRPGHRIVERRRQRRGHIPRRHRVTREE 178
Query: 225 AM 226
M
Sbjct: 179 TM 180
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 1 MREVKIRKLCLNICVGESGDRLTRAAKT-KAVDPAKPVAKKGKK 43
MR +I K+ +NI +G+SG+RL RAA+ + + KPV +K K+
Sbjct: 27 MRRPRIVKVTVNISIGQSGERLQRAAEVLEELTGQKPVFRKAKR 70
>sp|A5UL75|RL5_METS3 50S ribosomal protein L5P OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rpl5p PE=3 SV=1
Length = 170
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 28/185 (15%)
Query: 48 NVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGERAS 107
N M EV+I K ++I VGE+G++L+RA +LEQ+ Q PV + ++ T NP E
Sbjct: 2 NPMNEVQISKATVSIGVGEAGEKLSRAITLLEQMFDQTPVKTFSKVT------NP-EFGI 54
Query: 108 SFMKPLVV-LALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSG 166
+P+ L L G + K E L+ +N+ I Q G
Sbjct: 55 RKRQPIACKLTLRG----------------EKADKAIEMVLEGINKNIKPTQ---FDAQG 95
Query: 167 NFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDA 225
N FGI+EHID+ G+KY+P IGI+G++ V +PG+ +A RR + V +HR++KE+
Sbjct: 96 NLSFGIKEHIDIPGMKYNPDIGIFGMNVSVTFEKPGYRIAKRRIQQKKVPAKHRISKEET 155
Query: 226 MKWFQ 230
MK+ +
Sbjct: 156 MKYME 160
>sp|Q8TW17|RL5_METKA 50S ribosomal protein L5P OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl5p PE=3 SV=1
Length = 186
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 110/193 (56%), Gaps = 28/193 (14%)
Query: 43 KDKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTR-SKGRRN 101
+D N MR+ ++ K+ +NI VGESGDRL +A ++L++LTGQ+PV+++A+ T S G R
Sbjct: 14 EDWESNPMRKPRVGKVTVNIGVGESGDRLQKAYELLQELTGQKPVYTRAKQTNPSFGIRR 73
Query: 102 PGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLC 161
G + K + ++Q E + LD +++++H++Q
Sbjct: 74 ------------------GQPIGVKVDLRREQAIE-----FLDWTLDAVDRELHESQ--- 107
Query: 162 LHHSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRL 220
GN FG++EHI L G++YDP IGI+G+D V L RPGF V RRR V +HRL
Sbjct: 108 FDEFGNVCFGLEEHIALEGVEYDPEIGIFGMDIAVTLERPGFRVMRRRRCRRPVPRRHRL 167
Query: 221 TKEDAMKWFQTKM 233
TKE+ + + + +
Sbjct: 168 TKEEGIVFMEEEF 180
>sp|A9A9Q1|RL5_METM6 50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rpl5p PE=3 SV=1
Length = 181
Score = 97.4 bits (241), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 96/188 (51%), Gaps = 23/188 (12%)
Query: 47 KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGERA 106
K M++ +I+K+ +N VGE+GDRLT AKV+E+LTGQ PV + A+ T NP A
Sbjct: 9 KEPMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQT------NP---A 59
Query: 107 SSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSG 166
K L + G+ K + +N + + G
Sbjct: 60 FGIRKKLPI----GL---------KVTLRGKNAEEFLGNAFTAFKTSGKVLYASSFDQVG 106
Query: 167 NFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDA 225
NF FG+ EHID G KYDPSIGIYG+D V + G+ V R+ K + +H +TK++A
Sbjct: 107 NFSFGVPEHIDFPGQKYDPSIGIYGMDVCVTFEKSGYRVKSRKVKRSHIPKKHLVTKDEA 166
Query: 226 MKWFQTKM 233
+++ QTK
Sbjct: 167 IEYIQTKF 174
>sp|A4FWA8|RL5_METM5 50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rpl5p PE=3 SV=1
Length = 181
Score = 97.4 bits (241), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 97/188 (51%), Gaps = 23/188 (12%)
Query: 47 KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGERA 106
K M++ +I+K+ +N VGE+GDRLT AKV+E+LTGQ PV + A+ T NP A
Sbjct: 9 KEPMKKPRIQKITVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQT------NP---A 59
Query: 107 SSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSG 166
K L + G+ K + +N + + + G
Sbjct: 60 YGIRKKLPI----GL---------KVTLRGKNAEEFLKNAFTAFKACGKVLYASSFDQVG 106
Query: 167 NFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDA 225
NF FG+ EHID G KYDPS+GIYG+D V + G+ V R+ K + +H +TK++A
Sbjct: 107 NFSFGVPEHIDFPGQKYDPSVGIYGMDVCVTFDKAGYRVKSRKLKRSHIPKKHLVTKDEA 166
Query: 226 MKWFQTKM 233
+++ QTK
Sbjct: 167 IEYIQTKF 174
>sp|A6UQ57|RL5_METVS 50S ribosomal protein L5P OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rpl5p PE=3 SV=1
Length = 181
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 23/188 (12%)
Query: 47 KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGERA 106
K M++ +I+K+ +N VGE+GDRLT AKV+E LTGQ PV + A+ T NP A
Sbjct: 9 KEPMKKPRIQKVTVNFGVGEAGDRLTIGAKVIETLTGQAPVRTLAKQT------NP---A 59
Query: 107 SSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSG 166
K L + G+ K + +N + E + G
Sbjct: 60 FGIRKKLPI----GL---------KVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVG 106
Query: 167 NFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDA 225
NF FG+ EHID G KYDP++GIYG+D V +PG+ V R+ K + +H + KE+A
Sbjct: 107 NFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEA 166
Query: 226 MKWFQTKM 233
+++ + K
Sbjct: 167 IEYIEKKF 174
>sp|P14029|RL5_METVA 50S ribosomal protein L5P OS=Methanococcus vannielii GN=rpl5p PE=3
SV=1
Length = 181
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 23/188 (12%)
Query: 47 KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGERA 106
K M++ +I+K+ +N VGE+GDRLT AKV+E LTGQ PV + A+ T NP A
Sbjct: 9 KEPMKKPRIQKVTVNFGVGEAGDRLTIGAKVIETLTGQAPVRTLAKQT------NP---A 59
Query: 107 SSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSG 166
K L + G+ K + +N + E + G
Sbjct: 60 FGIRKKLPI----GL---------KVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVG 106
Query: 167 NFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDA 225
NF FG+ EHID G KYDP++GIYG+D V +PG+ V R+ K + +H + KE+A
Sbjct: 107 NFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEA 166
Query: 226 MKWFQTKM 233
+++ + K
Sbjct: 167 IEYIEKKF 174
>sp|Q6LXE0|RL5_METMP 50S ribosomal protein L5P OS=Methanococcus maripaludis (strain S2 /
LL) GN=rpl5p PE=3 SV=1
Length = 181
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 94/200 (47%), Gaps = 47/200 (23%)
Query: 47 KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSK-GRRNP--- 102
K M++ +I+K+ +N VGE+GDRLT AKV+E+LTGQ PV + A+ T G R
Sbjct: 9 KEPMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPI 68
Query: 103 -------GERASSFMK-PLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKI 154
G++A F+K G LF
Sbjct: 69 GLKVTLRGKKAEEFLKNAFTAFKACGKTLF------------------------------ 98
Query: 155 HKAQSLCLHHSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGI 213
+ GNF FG+ EHID G KYDPS+GIYG+D V + G+ V R+ K
Sbjct: 99 ----ASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDICVTFEKSGYRVKSRKVKRSH 154
Query: 214 VGFQHRLTKEDAMKWFQTKM 233
+ +H +TK++A+++ Q K
Sbjct: 155 IPEKHLVTKDEAIEYIQAKF 174
>sp|A6VGZ8|RL5_METM7 50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rpl5p PE=3 SV=1
Length = 181
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 95/188 (50%), Gaps = 23/188 (12%)
Query: 47 KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGERA 106
K M++ +I+K+ +N VGE+GDRLT AKV+E+LTGQ PV + A+ T NP A
Sbjct: 9 KEPMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQT------NP---A 59
Query: 107 SSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSG 166
K L + G+ K + +N + + G
Sbjct: 60 FGIRKKLPI----GL---------KVTLRGKNAEEFLGNAFSAFKTCGKVLYASSFDQVG 106
Query: 167 NFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDA 225
NF FG+ EHID G KYDPSIGIYG+D V + G+ V R+ K + +H +TK++A
Sbjct: 107 NFSFGVPEHIDFPGQKYDPSIGIYGMDICVTFEKSGYRVKSRKVKRSHIPKKHLVTKDEA 166
Query: 226 MKWFQTKM 233
+++ Q K
Sbjct: 167 IEYIQAKF 174
>sp|A6UWV1|RL5_META3 50S ribosomal protein L5P OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rpl5p PE=3 SV=1
Length = 181
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 93/198 (46%), Gaps = 47/198 (23%)
Query: 47 KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKG---RRNP- 102
K M + +I K+ +N+ VGESGD+L A KV+ ++TGQ+PV + A+ T ++ P
Sbjct: 9 KQPMSKPRIEKVTVNMGVGESGDKLLTAEKVVSEITGQKPVRTLAKQTNPAFNIRKKLPI 68
Query: 103 -------GERASSFMK-PLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKI 154
G++A F+K G LF
Sbjct: 69 GLKITLRGKKAEEFLKDAFTAFTASGKQLF------------------------------ 98
Query: 155 HKAQSLCLHHSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGI 213
+ GNF FGI EHID KYDPS+GIYG+D V +PG++V R+ K
Sbjct: 99 ----TYSFDKRGNFSFGIPEHIDFPNQKYDPSVGIYGMDICVTFEKPGYSVKRRKAKRAN 154
Query: 214 VGFQHRLTKEDAMKWFQT 231
+ +H ++KE+A+ + +T
Sbjct: 155 IPAKHLVSKEEAINYIET 172
>sp|A8MB19|RL5_CALMQ 50S ribosomal protein L5P OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=rpl5p PE=3
SV=1
Length = 197
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 28/203 (13%)
Query: 29 KAVDPAKPVAKKGKKDKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVF 88
+A+ P+ +K D + + MR + I + +N+ +G+SG+RL +AAKV+ +LTG+ P +
Sbjct: 12 RAIKPSDLDWRKFTLD-TGHPMRRIFIWSVAVNMGIGQSGERLEKAAKVMSELTGRTPSY 70
Query: 89 SKARYTRSKGRRNPGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELD 148
A K ++ G R + LV L F R L
Sbjct: 71 RLAH----KSIKDFGIRRGEPIGLLVTLRRNEAVWFLL------------------RALA 108
Query: 149 HLNQKIHKAQSLCLHHSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHR 207
++ + + ++GN FGI+EHI + G +YDP++GI+G D V L RPGF V +R
Sbjct: 109 AVDFTLREES----FNAGNVSFGIREHILVPGSRYDPALGIFGFDVAVTLARPGFRVQYR 164
Query: 208 RRKTGIVGFQHRLTKEDAMKWFQ 230
RR VG HR+++E+ +++FQ
Sbjct: 165 RRARADVGKDHRVSREETIRFFQ 187
>sp|Q2NFX0|RL5_METST 50S ribosomal protein L5P OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rpl5p PE=3 SV=1
Length = 168
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 94/186 (50%), Gaps = 30/186 (16%)
Query: 48 NVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNP--GER 105
NVM++ I K +NI VGE G++LTRA K++E L Q+PV + ++ T NP G R
Sbjct: 2 NVMQKPFIAKATINIGVGEGGEKLTRAEKLIETLVDQKPVRTYSKVT------NPEFGIR 55
Query: 106 ASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHS 165
+ V L + + K+ L L +I +Q
Sbjct: 56 KKQPIACKVTL------------------RGEKADKIISMVLSGLENRIKASQ---FDKE 94
Query: 166 GNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKED 224
GN FGI+EHID+ G+KYDP IGI+G+D V +PG + RR + + R+TKE+
Sbjct: 95 GNVSFGIREHIDIPGVKYDPDIGIFGMDVSVTFQKPGHRIKERRLRPKKLPQAQRVTKEE 154
Query: 225 AMKWFQ 230
+M++ +
Sbjct: 155 SMEYMK 160
>sp|Q12ZT8|RL5_METBU 50S ribosomal protein L5P OS=Methanococcoides burtonii (strain DSM
6242) GN=rpl5p PE=3 SV=1
Length = 169
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 26/186 (13%)
Query: 48 NVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGERAS 107
N MR K+ K+ +++ VGESG L A +LE +TGQ V S A+ T GE
Sbjct: 3 NPMRNPKVEKVVVHMGVGESGQHLVDAEGILETITGQTVVRSYAKRTLPAFTIKKGEPIG 62
Query: 108 SFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGN 167
K + + E L + ++++++Q GN
Sbjct: 63 C----------------------KVTLRGEAAEGFLETSLGIVEKRLNESQFDIF---GN 97
Query: 168 FGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDAM 226
FG++EH D G++YDP+IGI+G+D VV+ RPG+ V+ RR + H++TKED +
Sbjct: 98 VSFGVEEHTDYPGMRYDPNIGIFGMDITVVVNRPGYRVSKRRIAKRKIPTSHKITKEDTI 157
Query: 227 KWFQTK 232
+F+ K
Sbjct: 158 SFFKDK 163
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,079,457
Number of Sequences: 539616
Number of extensions: 3553609
Number of successful extensions: 14867
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 532
Number of HSP's that attempted gapping in prelim test: 14202
Number of HSP's gapped (non-prelim): 784
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)