Query psy1616
Match_columns 237
No_of_seqs 126 out of 1046
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 22:19:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00156 60S ribosomal protein 100.0 5.7E-61 1.2E-65 409.4 14.4 164 46-235 4-168 (172)
2 PRK04219 rpl5p 50S ribosomal p 100.0 2.7E-60 5.8E-65 407.2 14.7 164 45-234 7-172 (177)
3 KOG0397|consensus 100.0 9.2E-58 2E-62 381.7 9.6 163 45-234 5-169 (176)
4 COG0094 RplE Ribosomal protein 100.0 1.2E-57 2.5E-62 390.2 10.3 169 30-219 6-180 (180)
5 PRK00010 rplE 50S ribosomal pr 100.0 1.2E-48 2.7E-53 335.2 9.7 161 31-231 7-172 (179)
6 CHL00078 rpl5 ribosomal protei 100.0 5.4E-48 1.2E-52 331.8 9.1 161 31-231 8-173 (181)
7 KOG0398|consensus 100.0 1.7E-34 3.6E-39 256.7 11.0 141 41-201 109-258 (278)
8 PF00673 Ribosomal_L5_C: ribos 99.9 2.7E-28 5.9E-33 190.1 4.9 92 111-228 1-94 (95)
9 PF00281 Ribosomal_L5: Ribosom 99.8 6.1E-19 1.3E-23 126.2 5.4 53 48-100 1-56 (56)
10 KOG0397|consensus 99.5 6.9E-15 1.5E-19 124.1 2.7 75 1-78 10-88 (176)
11 PF00281 Ribosomal_L5: Ribosom 98.9 8E-10 1.7E-14 79.2 3.2 43 1-43 3-48 (56)
12 COG0094 RplE Ribosomal protein 98.8 2.5E-09 5.4E-14 92.8 2.9 51 1-56 26-80 (180)
13 PTZ00156 60S ribosomal protein 98.8 4.4E-09 9.5E-14 90.8 3.1 70 1-75 8-83 (172)
14 PRK04219 rpl5p 50S ribosomal p 98.4 1E-07 2.3E-12 82.6 2.4 73 1-78 12-90 (177)
15 PRK00010 rplE 50S ribosomal pr 98.0 2.5E-06 5.4E-11 73.9 2.8 43 1-43 26-72 (179)
16 CHL00078 rpl5 ribosomal protei 98.0 3.1E-06 6.8E-11 73.5 2.1 43 1-43 27-73 (181)
17 KOG0398|consensus 92.5 0.079 1.7E-06 48.6 2.2 49 3-56 120-172 (278)
18 PHA00451 protein kinase 21.2 91 0.002 30.0 3.0 21 146-171 182-203 (362)
No 1
>PTZ00156 60S ribosomal protein L11; Provisional
Probab=100.00 E-value=5.7e-61 Score=409.43 Aligned_cols=164 Identities=61% Similarity=0.953 Sum_probs=160.1
Q ss_pred ccCcccccceeeEEEEeecchhHHHHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCCCCCCCccceEEEEecCchhc
Q psy1616 46 SKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGERASSFMKPLVVLALPGMYLF 124 (237)
Q Consensus 46 y~N~mqvpki~KI~ln~~vges~d~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~~~~~~~~iG~kvTLRg~~~~ 124 (237)
.+|||++|+|+|||||+|+|++++.|..|..+|++||||+|++|+||+| ++||||+| |||||+|||||+
T Consensus 4 ~~n~m~~PkI~KIvvN~gvGe~~~~L~~a~~~L~~ITGQkPv~tkAKksia~FkiRkG-------~pIG~kVTLRg~--- 73 (172)
T PTZ00156 4 KENPMRKIRIEKLVLNICVGESGDRLTRAAKVLEQLTGQKPVFSKARYTVRSFGIRRN-------EKIACHVTVRGD--- 73 (172)
T ss_pred cCCCccCceeEEEEEEcCcCchHHHHHHHHHHHHHHcCCceEEEEhhcccccccccCC-------CEEEEEEEEchH---
Confidence 3799999999999999999999999999999999999999999999999 99999999 999999999999
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeecccccccccccCCCCCccceeEEEEcCCcceee
Q psy1616 125 YKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNV 204 (237)
Q Consensus 125 ~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~fei~yd~~~~i~G~di~ivt~~~G~~v 204 (237)
+||+||++|+ ++++ |+ ++.++||.+|||+|||+||++||++|||.++++||||+|+++||||||
T Consensus 74 ------~m~eFLdrli-----rirD----f~-l~~~sFD~~GN~sfGI~e~i~fei~yD~~~~i~GmdI~ivl~rpG~rv 137 (172)
T PTZ00156 74 ------KAEEILERGL-----KVKE----FE-LKKRNFSDTGNFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLGRPGFRV 137 (172)
T ss_pred ------HHHHHHHHHH-----hhhc----cc-ccCcccCCCcccccCCchheeeceecCcccCcccCceEEEEeCCccee
Confidence 9999999999 7888 88 999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCcccChHHHHHHHHHhhCc
Q psy1616 205 AHRRRKTGIVGFQHRLTKEDAMKWFQTKMLF 235 (237)
Q Consensus 205 ~~r~~~~~~ig~~h~~~~~~~~~~~~~~~~~ 235 (237)
++|++++++||.+|||++|||++||+++|.-
T Consensus 138 ~~R~~~~~~i~~~hrv~~eea~~~~~~~~~v 168 (172)
T PTZ00156 138 ARRKRKQSKVGKSHRVTKEEAMKWFKTTFDG 168 (172)
T ss_pred eecccccccCCCCceeCHHHHHHHHHhhcCE
Confidence 9999999999999999999999999999863
No 2
>PRK04219 rpl5p 50S ribosomal protein L5P; Reviewed
Probab=100.00 E-value=2.7e-60 Score=407.16 Aligned_cols=164 Identities=43% Similarity=0.680 Sum_probs=159.3
Q ss_pred cccCcccccceeeEEEEeecchhHHHHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCCCCCCCccceEEEEecCchh
Q psy1616 45 KSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGERASSFMKPLVVLALPGMYL 123 (237)
Q Consensus 45 ~y~N~mqvpki~KI~ln~~vges~d~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~~~~~~~~iG~kvTLRg~~~ 123 (237)
..+|||++|+|+||+||+|+|++++.|..|..+|++||||+|++++||++ ++||||+| +||||+|||||+
T Consensus 7 ~~~N~m~iPkI~KIvin~gvgea~~~L~~a~~~L~~ITGQkP~~tkAKksIa~FkiRkG-------~pIG~kVTLRg~-- 77 (177)
T PRK04219 7 WEMNPMRKPRIEKVVVNIGVGESGERLTKAEKLLEELTGQKPVRTRAKKTIPDFGIRKG-------EPIGVKVTLRGE-- 77 (177)
T ss_pred ccCCCccCceeeEEEEEcCcHHHHHHHHHHHHHHHHHhCCCceeeeccccccccCccCC-------CEEEEEEEEccH--
Confidence 46899999999999999999999999999999999999999999999999 99999999 999999999999
Q ss_pred cccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeeccccccc-ccccCCCCCccceeEEEEcCCcce
Q psy1616 124 FYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGF 202 (237)
Q Consensus 124 ~~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~f-ei~yd~~~~i~G~di~ivt~~~G~ 202 (237)
+||+||++|+++++|+|+. ++||.+|||+|||+||++| |++|||.++++||||+|||+||||
T Consensus 78 -------~m~~FL~rli~ivd~~l~~----------~sfD~~GN~sfGI~e~~~fpei~yd~~~~i~GmdI~ivt~rpg~ 140 (177)
T PRK04219 78 -------KAEEFLKTALEAVGNRLKA----------SSFDETGNVSFGIEEHIDFPGVKYDPEIGIFGMDVCVTLERPGY 140 (177)
T ss_pred -------HHHHHHHHHHHhhcCCCCC----------cccCCCceEeeCchhhhccCccccCcccccccccEEEEEcCCcc
Confidence 9999999999999766655 9999999999999999999 999999999999999999999999
Q ss_pred eecccccccCCCCCCcccChHHHHHHHHHhhC
Q psy1616 203 NVAHRRRKTGIVGFQHRLTKEDAMKWFQTKML 234 (237)
Q Consensus 203 ~v~~r~~~~~~ig~~h~~~~~~~~~~~~~~~~ 234 (237)
||++||+++++||.+|||++|||++||+++|.
T Consensus 141 rv~~r~~~~~~i~~~~~~~~~e~~~~~~~~~~ 172 (177)
T PRK04219 141 RVARRRRKRRKIPSRHRVTKEEAIEFLEENFG 172 (177)
T ss_pred chhhhhhccccCCCCceeCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999986
No 3
>KOG0397|consensus
Probab=100.00 E-value=9.2e-58 Score=381.75 Aligned_cols=163 Identities=69% Similarity=1.035 Sum_probs=159.1
Q ss_pred cccCcccccceeeEEEEeecchhHHHHHHHHHHHHHHhCCCcEEEeeecC-CCCCc-cCCCCCCCCCccceEEEEecCch
Q psy1616 45 KSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKGR-RNPGERASSFMKPLVVLALPGMY 122 (237)
Q Consensus 45 ~y~N~mqvpki~KI~ln~~vges~d~L~~a~~~Le~ITGQkPv~tkAK~s-~~fki-R~g~~~~~~~~~iG~kvTLRg~~ 122 (237)
...|||+..+|.|+|||||+|||+|+|++|+++|||+|||+||+++|++| ++|+| |++ +|+|.||+||.
T Consensus 5 ~~~npMrel~i~KL~lnIcvgESGdrLtRAaKvLEQLtGQ~pvfskaryTvR~fGirRNE--------KIAvh~tVrG~- 75 (176)
T KOG0397|consen 5 KAQNPMRELKIQKLVLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNE--------KIAVHVTVRGP- 75 (176)
T ss_pred cccCchHhhhhheeeEEEeecccchHHHHHHHHHHHhcCCCccchhhhhhHHhhccccCc--------eEEEEEEeeCc-
Confidence 37899999999999999999999999999999999999999999999999 99999 555 99999999999
Q ss_pred hcccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeecccccccccccCCCCCccceeEEEEcCCcce
Q psy1616 123 LFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGF 202 (237)
Q Consensus 123 ~~~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~fei~yd~~~~i~G~di~ivt~~~G~ 202 (237)
++++.|++-+++.+.+|+. ++|+..|||+|||+||||++|+|||++||||||++||++||||
T Consensus 76 --------KAeeiLe~gLkVkeYeL~~----------~nFS~tgnFGFGiqEHIDLGikYDPsiGIyGmDFyVvl~RpG~ 137 (176)
T KOG0397|consen 76 --------KAEEILERGLKVKEYELRK----------RNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVLGRPGY 137 (176)
T ss_pred --------cHHHHHHhccchhhhhhhh----------hcccccCCcccchhhheeccceeCCCcceeeeeEEEEecCCcc
Confidence 9999999999999999999 8899999999999999999999999999999999999999999
Q ss_pred eecccccccCCCCCCcccChHHHHHHHHHhhC
Q psy1616 203 NVAHRRRKTGIVGFQHRLTKEDAMKWFQTKML 234 (237)
Q Consensus 203 ~v~~r~~~~~~ig~~h~~~~~~~~~~~~~~~~ 234 (237)
+|++|+|++++||.+||+++||||+|||++|.
T Consensus 138 rv~~rkr~~g~vG~~hr~~ked~~kwFq~kyd 169 (176)
T KOG0397|consen 138 RVARRKRCKGRVGNKHRVTKEDAMKWFQQKYD 169 (176)
T ss_pred hhhhhccCcCccCccccccHHHHHHHHHHhCc
Confidence 99999999999999999999999999999984
No 4
>COG0094 RplE Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-57 Score=390.21 Aligned_cols=169 Identities=31% Similarity=0.407 Sum_probs=161.4
Q ss_pred ccCCCCccccccccccccCcccccceeeEEEEeecchh---HHHHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCCC
Q psy1616 30 AVDPAKPVAKKGKKDKSKNVMREVKIRKLCLNICVGES---GDRLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGER 105 (237)
Q Consensus 30 ~itgqkPV~sk~~k~~y~N~mqvpki~KI~ln~~vges---~d~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~~ 105 (237)
..+-...++...++++|.|||++|+|+||+||+||||| ++.|+.|+.+|++||||||++|+||+| ++||||+|
T Consensus 6 ~~y~~~i~~~l~~~~~y~n~M~~P~i~KVvvNmGvGEa~~d~~~l~~A~~~L~~ItGQKPv~tkAkksia~FkiR~g--- 82 (180)
T COG0094 6 EKYKDEIVPALIKKFGYSNPMQVPRIEKVVVNMGVGEAAADGKRLEKAAKDLELITGQKPVITKAKKSIAGFKIREG--- 82 (180)
T ss_pred HHHHHHHhHHHHHhhccCCccccceeEEEEEEccchhhhhchHHHHHHHHHHHHHhCCCceeeehhcccccccccCC---
Confidence 34445556778899999999999999999999999999 679999999999999999999999999 99999999
Q ss_pred CCCCccceEEEEecCchhcccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeeccccccc-ccccCC
Q psy1616 106 ASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDL-GIKYDP 184 (237)
Q Consensus 106 ~~~~~~iG~kvTLRg~~~~~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~f-ei~yd~ 184 (237)
|||||||||||+ +||+||++++++++|++++ |+|++.++||+.|||+|||.||++| ||+|||
T Consensus 83 ----~pIG~KVTLRg~---------rm~eFL~rl~~i~lPrvrd----frGls~~sFDg~GN~sfGI~E~i~FPei~yD~ 145 (180)
T COG0094 83 ----MPIGVKVTLRGE---------RMYEFLDRLLNIALPRVRD----FRGLSPKSFDGRGNYSFGIKEQIIFPEIDYDP 145 (180)
T ss_pred ----CeeeEEEEEchH---------HHHHHHHHHHHhhcccccc----ccCCCccccCCCCceEecchheeecCccccCc
Confidence 999999999999 9999999999999999999 9999999999999999999999999 999999
Q ss_pred CCCccceeEEEEcCCcceeeccccc-ccCCCCCCcc
Q psy1616 185 SIGIYGLDFYVVLGRPGFNVAHRRR-KTGIVGFQHR 219 (237)
Q Consensus 185 ~~~i~G~di~ivt~~~G~~v~~r~~-~~~~ig~~h~ 219 (237)
.++|+||||+|+|+||| +++.|++ +...+|+.|+
T Consensus 146 ~~~i~GMdi~ivtta~~-d~e~R~ll~~~~~Pf~~~ 180 (180)
T COG0094 146 IIGIRGMDITIVTTAKG-DVEARALLSAFGIPFRKR 180 (180)
T ss_pred cCCccCceEEEEecCCC-hHHHHHHHHhcCCCCCCC
Confidence 99999999999999999 9999888 9999999986
No 5
>PRK00010 rplE 50S ribosomal protein L5; Validated
Probab=100.00 E-value=1.2e-48 Score=335.18 Aligned_cols=161 Identities=27% Similarity=0.305 Sum_probs=150.7
Q ss_pred cCCCCccccccccccccCcccccceeeEEEEeecchhHH---HHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCCCC
Q psy1616 31 VDPAKPVAKKGKKDKSKNVMREVKIRKLCLNICVGESGD---RLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGERA 106 (237)
Q Consensus 31 itgqkPV~sk~~k~~y~N~mqvpki~KI~ln~~vges~d---~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~~~ 106 (237)
.|.....+...++++|+|+|++|+|+|||||+|+|++++ .|..|..+|++||||+|++++||++ ++||+|+|
T Consensus 7 ~Y~~~v~~~L~~~~~y~n~m~iPki~KIvin~gvg~~~~~~~~l~~a~~~L~~ITGQkP~~t~aKksi~~fkiRkg---- 82 (179)
T PRK00010 7 KYKEEIVPALMKEFGYKNVMQVPKLEKIVLNMGVGEAVADKKLLENAVEDLTLITGQKPVVTKAKKSIAGFKLREG---- 82 (179)
T ss_pred HHHHHHHHHHHHHhCCCCcccCCceeEEEEEccCcchhhchHHHHHHHHHHHHHhCCceEEEeccccccccCCCCC----
Confidence 344555667778999999999999999999999999884 8999999999999999999999999 99999999
Q ss_pred CCCccceEEEEecCchhcccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeeccccccc-ccccCCC
Q psy1616 107 SSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDL-GIKYDPS 185 (237)
Q Consensus 107 ~~~~~iG~kvTLRg~~~~~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~f-ei~yd~~ 185 (237)
||+||+|||||. +||+||++|+++|+|++++ |+|++.++||.+|||+|||+||++| |++||+.
T Consensus 83 ---~piG~kVTLRg~---------~my~FL~kli~~vlPrird----f~Gi~~~sfD~~Gn~sfGi~e~~~FPei~yd~~ 146 (179)
T PRK00010 83 ---MPIGCKVTLRGE---------RMYEFLDRLINIALPRVRD----FRGLSPKSFDGRGNYTLGIKEQIIFPEIDYDKI 146 (179)
T ss_pred ---CEEEEEEEECcH---------HHHHHHHHHHHHhcccccc----cccccccccCCCceEEECcchhhcCCCcccCcc
Confidence 999999999999 9999999999999999999 9999999999999999999999999 9999999
Q ss_pred CCccceeEEEEcCCcceeecccccccCCCCCCcccChHHHHHHHHH
Q psy1616 186 IGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDAMKWFQT 231 (237)
Q Consensus 186 ~~i~G~di~ivt~~~G~~v~~r~~~~~~ig~~h~~~~~~~~~~~~~ 231 (237)
++++||||+|||++. |.+||..++..
T Consensus 147 ~~i~G~~Itivtta~--------------------t~~ea~~LLs~ 172 (179)
T PRK00010 147 DKIRGMDITIVTTAK--------------------TDEEARALLKA 172 (179)
T ss_pred CCcCCceEEEEeccC--------------------CHHHHHHHHHH
Confidence 999999999999965 47888877765
No 6
>CHL00078 rpl5 ribosomal protein L5
Probab=100.00 E-value=5.4e-48 Score=331.84 Aligned_cols=161 Identities=23% Similarity=0.312 Sum_probs=150.1
Q ss_pred cCCCCccccccccccccCcccccceeeEEEEeecchhHH---HHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCCCC
Q psy1616 31 VDPAKPVAKKGKKDKSKNVMREVKIRKLCLNICVGESGD---RLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGERA 106 (237)
Q Consensus 31 itgqkPV~sk~~k~~y~N~mqvpki~KI~ln~~vges~d---~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~~~ 106 (237)
.|-....+...++++|+|+|++|+|+||+||+|+|++++ .|..|..+|++||||+|++++||+| ++||+|+|
T Consensus 8 ~Y~~~v~~~L~~~~~~~n~m~iP~i~KIvin~gvg~~~~~~k~l~~a~~~L~~ITGQkP~~t~AKksia~FkiRkg---- 83 (181)
T CHL00078 8 LYKEKIVPKLIEKFLYKNIHQVPKLKKIVINRGLGEASQNSKILESSIKELTIITGQKPIITRAKKAIAGFKIREK---- 83 (181)
T ss_pred HHHHHHHHHHHHHhCCCCcccCCceeEEEEecCchhhhhchHHHHHHHHHHHHHhCCceEEEeecccchhcCccCC----
Confidence 344555666778999999999999999999999999884 6999999999999999999999999 99999999
Q ss_pred CCCccceEEEEecCchhcccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeeccccccc-ccccCCC
Q psy1616 107 SSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDL-GIKYDPS 185 (237)
Q Consensus 107 ~~~~~iG~kvTLRg~~~~~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~f-ei~yd~~ 185 (237)
||+||+|||||. +||+||++|+++|+|++++ |+|++.++||.+|||+|||+||++| |++||++
T Consensus 84 ---~piG~kVTLRg~---------~my~FL~kli~~vlPrird----f~Gi~~~sfd~~Gn~sfGi~e~~~FPEi~~d~~ 147 (181)
T CHL00078 84 ---MPVGVSVTLRGD---------KMYAFLDRLINLALPRIRD----FQGLSPKSFDGHGNYNLGLKEQLMFPEIDYDKI 147 (181)
T ss_pred ---CEEEEEEEECcH---------hHHHHHHHHHHHhcccccc----cccccccccCCCceEEECcchhccCCCcccCcc
Confidence 999999999999 9999999999999999999 9999999999999999999999999 9999999
Q ss_pred CCccceeEEEEcCCcceeecccccccCCCCCCcccChHHHHHHHHH
Q psy1616 186 IGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDAMKWFQT 231 (237)
Q Consensus 186 ~~i~G~di~ivt~~~G~~v~~r~~~~~~ig~~h~~~~~~~~~~~~~ 231 (237)
.+++||||+|||++. |.+||..+++.
T Consensus 148 ~~i~G~~Itivtta~--------------------t~~ea~~Ll~~ 173 (181)
T CHL00078 148 DQIRGMDISIVTTAK--------------------TDQEGLALLKE 173 (181)
T ss_pred CCcCCCeEEEEEeeC--------------------CHHHHHHHHHH
Confidence 999999999999965 46788877765
No 7
>KOG0398|consensus
Probab=100.00 E-value=1.7e-34 Score=256.65 Aligned_cols=141 Identities=20% Similarity=0.224 Sum_probs=132.5
Q ss_pred cccccccCcccccceeeEEEEeecchhHH---HHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCCCCCCCccceEEE
Q psy1616 41 GKKDKSKNVMREVKIRKLCLNICVGESGD---RLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGERASSFMKPLVVL 116 (237)
Q Consensus 41 ~~k~~y~N~mqvpki~KI~ln~~vges~d---~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~~~~~~~~iG~kv 116 (237)
...+.|-|++++|+|+||+|||+++|+.. .|+.|++++++||||||..++||+. +.||+|+| +|+|++|
T Consensus 109 lp~~~~vn~~nvP~v~kVVvnc~~~eA~~n~~~l~~am~~~~~ITG~kP~~~~ar~dV~twKlR~g-------~p~G~kV 181 (278)
T KOG0398|consen 109 LPEFKYVNIHNVPKVQKVVVNCGIGEAAQNDKGLEAAMKDIALITGQKPIKTRARADVATWKLREG-------QPLGIKV 181 (278)
T ss_pred cccccccChhhCCceeeeeeecccHHhhhhHHHHHHHHHHHHHHhCCCcceeeecccCCceeeccC-------CcceeEE
Confidence 45577999999999999999999999882 8999999999999999999999999 99999999 9999999
Q ss_pred EecCchhcccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeecc-ccc-cc-ccc--cCCCCCccce
Q psy1616 117 ALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQ-EHI-DL-GIK--YDPSIGIYGL 191 (237)
Q Consensus 117 TLRg~~~~~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~-e~i-~f-ei~--yd~~~~i~G~ 191 (237)
||||+ .||+||.+|+++|||++++ |+|++.+++|++||++||++ |.+ .| ||. ||..+..+||
T Consensus 182 tL~G~---------~My~FLs~L~elvLPr~rd----fkGvSp~Sgd~~GniSfGl~aEd~~~FPeI~An~d~~pkt~Gm 248 (278)
T KOG0398|consen 182 TLRGD---------VMYSFLSRLIELVLPRTRD----FKGVSPSSGDGNGNISFGLKAEDQGVFPEIRANFDAVPKTRGM 248 (278)
T ss_pred EEech---------HHHHHHHHHHHHhcccccc----ccCcCCCCcCCCCCEEeccchhhcccCchhhhhhhccccccce
Confidence 99999 9999999999999999999 99999999999999999999 554 55 886 9999999999
Q ss_pred eEEEEcCCcc
Q psy1616 192 DFYVVLGRPG 201 (237)
Q Consensus 192 di~ivt~~~G 201 (237)
||.|.|++.-
T Consensus 249 ~vnI~T~ak~ 258 (278)
T KOG0398|consen 249 DVNISTTAKS 258 (278)
T ss_pred eEeecccccc
Confidence 9999999864
No 8
>PF00673 Ribosomal_L5_C: ribosomal L5P family C-terminus; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L5, ~180 amino acids in length, is one of the proteins from the large ribosomal subunit. In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , , ], groups: Eubacterial L5. Algal chloroplast L5. Cyanelle L5. Archaebacterial L5. Mammalian L11. Tetrahymena thermophila L21. Dictyostelium discoideum (Slime mold) L5 Saccharomyces cerevisiae (Baker's yeast) L16 (39A). Plant mitochondrial L5. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1IQ4_B 2ZJR_D 2ZJP_D 3PIO_D 3CF5_D 2ZJQ_D 3DLL_D 3PIP_D 2WDL_G 3UZN_G ....
Probab=99.95 E-value=2.7e-28 Score=190.11 Aligned_cols=92 Identities=27% Similarity=0.403 Sum_probs=83.7
Q ss_pred cceEEEEecCchhcccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeeccccccc-ccccCCCCCcc
Q psy1616 111 KPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDL-GIKYDPSIGIY 189 (237)
Q Consensus 111 ~iG~kvTLRg~~~~~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~f-ei~yd~~~~i~ 189 (237)
||||||||||+ +||+||++++.+|+|++++ |+|++.+++|.+|||+|||+||++| |++||++++++
T Consensus 1 PiG~kvTLRg~---------~m~~FL~kli~~vlPrik~----f~g~~~~~fd~~Gn~sfGi~e~~~Fpei~yd~~~~i~ 67 (95)
T PF00673_consen 1 PIGCKVTLRGK---------KMYEFLDKLITIVLPRIKD----FKGLKASSFDNSGNFSFGIKEHILFPEIEYDPFPGIF 67 (95)
T ss_dssp EEEEEEEEEHH---------HHHHHHHHHHHTTTTTSSS----TSSBSSTTBSSSSEEEEEESSSSSSSSSSSTSSSSSS
T ss_pred CeEEEEEEccH---------HHHHHHHHHHHHhhhhccc----ccccCccccCCCceEEEEeeeeeecCCccccCCCCcc
Confidence 89999999999 9999999999999999999 9999999999999999999999999 99999999999
Q ss_pred ceeEEEEcCCcceeecccccccCCCCCCcc-cChHHHHHH
Q psy1616 190 GLDFYVVLGRPGFNVAHRRRKTGIVGFQHR-LTKEDAMKW 228 (237)
Q Consensus 190 G~di~ivt~~~G~~v~~r~~~~~~ig~~h~-~~~~~~~~~ 228 (237)
||||+|+|++ +.+..|| +.+++++.|
T Consensus 68 G~~i~i~t~a-------------k~~~~~~~ll~~~~ipf 94 (95)
T PF00673_consen 68 GMDITIVTTA-------------KTPKEARLLLKSFGIPF 94 (95)
T ss_dssp CEEEEEEESC-------------SSHHHHHHHHHHHHHHB
T ss_pred ceEEEEEEec-------------CCcHHHHHHHHHhCCcc
Confidence 9999999544 4555666 667776665
No 9
>PF00281 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L5, ~180 amino acids in length, is one of the proteins from the large ribosomal subunit. In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , , ], groups: Eubacterial L5. Algal chloroplast L5. Cyanelle L5. Archaebacterial L5. Mammalian L11. Tetrahymena thermophila L21. Dictyostelium discoideum (Slime mold) L5 Saccharomyces cerevisiae (Baker's yeast) L16 (39A). Plant mitochondrial L5. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1IQ4_B 4A1A_D 4A1C_D 4A17_D 4A1E_D 3BBO_H 3O5H_K 1S1I_J 3O58_K 3IZS_E ....
Probab=99.76 E-value=6.1e-19 Score=126.22 Aligned_cols=53 Identities=51% Similarity=0.710 Sum_probs=49.2
Q ss_pred CcccccceeeEEEEeecchhHHH--HHHHHHHHHHHhCCCcEEEeeecC-CCCCcc
Q psy1616 48 NVMREVKIRKLCLNICVGESGDR--LTRAAKVLEQLTGQQPVFSKARYT-RSKGRR 100 (237)
Q Consensus 48 N~mqvpki~KI~ln~~vges~d~--L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR 100 (237)
|+|++|+|+||+||+|+|++++. |+.|.++|+.||||+|++++||+| ++||+|
T Consensus 1 N~m~vPki~KIvin~gvg~~~~~k~l~~a~~~L~~ItGQkp~~t~aKksia~FkiR 56 (56)
T PF00281_consen 1 NVMQVPKIEKIVINIGVGEAGDDKVLEKAKKELEQITGQKPVITKAKKSIANFKIR 56 (56)
T ss_dssp STTTSSEEEEEEEEEESSTTSSTHHHHHHHHHHHHHHSS--EEEEESSSBSSSTBS
T ss_pred CCccccEEEEEEEECCCCccccchHHHHHHHHHHHHhCCceeEEEeeccccccccC
Confidence 79999999999999999998865 999999999999999999999999 999997
No 10
>KOG0397|consensus
Probab=99.50 E-value=6.9e-15 Score=124.08 Aligned_cols=75 Identities=44% Similarity=0.628 Sum_probs=59.8
Q ss_pred CCcceeeeEEEEeecCCcchHhhHHhhh-cccCCCCcccccccccccc-CcccccceeeEEEEeecch--hHHHHHHHHH
Q psy1616 1 MREVKIRKLCLNICVGESGDRLTRAAKT-KAVDPAKPVAKKGKKDKSK-NVMREVKIRKLCLNICVGE--SGDRLTRAAK 76 (237)
Q Consensus 1 M~~i~i~Kl~vni~vGe~g~~l~~A~kv-~~itgqkPV~sk~~k~~y~-N~mqvpki~KI~ln~~vge--s~d~L~~a~~ 76 (237)
|++++|.|||||||||||||+|++|+|| ++++||+||+++.. |+ ..+-+-+=+||-+|+.|.. +.+.|+++++
T Consensus 10 Mrel~i~KL~lnIcvgESGdrLtRAaKvLEQLtGQ~pvfskar---yTvR~fGirRNEKIAvh~tVrG~KAeeiLe~gLk 86 (176)
T KOG0397|consen 10 MRELKIQKLVLNICVGESGDRLTRAAKVLEQLTGQTPVFSKAR---YTVRSFGIRRNEKIAVHVTVRGPKAEEILERGLK 86 (176)
T ss_pred hHhhhhheeeEEEeecccchHHHHHHHHHHHhcCCCccchhhh---hhHHhhccccCceEEEEEEeeCccHHHHHHhccc
Confidence 9999999999999999999999999999 99999999999832 21 1234556679999999953 3356666655
Q ss_pred HH
Q psy1616 77 VL 78 (237)
Q Consensus 77 ~L 78 (237)
+-
T Consensus 87 Vk 88 (176)
T KOG0397|consen 87 VK 88 (176)
T ss_pred hh
Confidence 43
No 11
>PF00281 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L5, ~180 amino acids in length, is one of the proteins from the large ribosomal subunit. In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , , ], groups: Eubacterial L5. Algal chloroplast L5. Cyanelle L5. Archaebacterial L5. Mammalian L11. Tetrahymena thermophila L21. Dictyostelium discoideum (Slime mold) L5 Saccharomyces cerevisiae (Baker's yeast) L16 (39A). Plant mitochondrial L5. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1IQ4_B 4A1A_D 4A1C_D 4A17_D 4A1E_D 3BBO_H 3O5H_K 1S1I_J 3O58_K 3IZS_E ....
Probab=98.92 E-value=8e-10 Score=79.21 Aligned_cols=43 Identities=47% Similarity=0.679 Sum_probs=38.5
Q ss_pred CCcceeeeEEEEeecCCcchH--hhHHhhh-cccCCCCcccccccc
Q psy1616 1 MREVKIRKLCLNICVGESGDR--LTRAAKT-KAVDPAKPVAKKGKK 43 (237)
Q Consensus 1 M~~i~i~Kl~vni~vGe~g~~--l~~A~kv-~~itgqkPV~sk~~k 43 (237)
|+.|+|+|+|||||+|++++. |..|.++ +.|+||+|+.++.++
T Consensus 3 m~vPki~KIvin~gvg~~~~~k~l~~a~~~L~~ItGQkp~~t~aKk 48 (56)
T PF00281_consen 3 MQVPKIEKIVINIGVGEAGDDKVLEKAKKELEQITGQKPVITKAKK 48 (56)
T ss_dssp TTSSEEEEEEEEEESSTTSSTHHHHHHHHHHHHHHSS--EEEEESS
T ss_pred ccccEEEEEEEECCCCccccchHHHHHHHHHHHHhCCceeEEEeec
Confidence 899999999999999999999 9999999 999999999998443
No 12
>COG0094 RplE Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=2.5e-09 Score=92.77 Aligned_cols=51 Identities=41% Similarity=0.632 Sum_probs=45.2
Q ss_pred CCcceeeeEEEEeecCCc---chHhhHHhhh-cccCCCCccccccccccccCccccccee
Q psy1616 1 MREVKIRKLCLNICVGES---GDRLTRAAKT-KAVDPAKPVAKKGKKDKSKNVMREVKIR 56 (237)
Q Consensus 1 M~~i~i~Kl~vni~vGe~---g~~l~~A~kv-~~itgqkPV~sk~~k~~y~N~mqvpki~ 56 (237)
|+.|+|+|+||||||||+ |+.|++|... +.||||+||.++ .++...--+|+
T Consensus 26 M~~P~i~KVvvNmGvGEa~~d~~~l~~A~~~L~~ItGQKPv~tk-----Akksia~FkiR 80 (180)
T COG0094 26 MQVPRIEKVVVNMGVGEAAADGKRLEKAAKDLELITGQKPVITK-----AKKSIAGFKIR 80 (180)
T ss_pred cccceeEEEEEEccchhhhhchHHHHHHHHHHHHHhCCCceeee-----hhccccccccc
Confidence 899999999999999999 9999999999 999999999999 44455555555
No 13
>PTZ00156 60S ribosomal protein L11; Provisional
Probab=98.76 E-value=4.4e-09 Score=90.80 Aligned_cols=70 Identities=47% Similarity=0.750 Sum_probs=53.1
Q ss_pred CCcceeeeEEEEeecCCcchHhhHHhhh-cccCCCCccccccccccccCccccccee---eEEEEeecc-hhH-HHHHHH
Q psy1616 1 MREVKIRKLCLNICVGESGDRLTRAAKT-KAVDPAKPVAKKGKKDKSKNVMREVKIR---KLCLNICVG-ESG-DRLTRA 74 (237)
Q Consensus 1 M~~i~i~Kl~vni~vGe~g~~l~~A~kv-~~itgqkPV~sk~~k~~y~N~mqvpki~---KI~ln~~vg-es~-d~L~~a 74 (237)
|+.|+|+|+||||||||+++.|..|.++ +.||||+|+.++ .+....--+|+ .|-+...+- +.. +-|.++
T Consensus 8 m~~PkI~KIvvN~gvGe~~~~L~~a~~~L~~ITGQkPv~tk-----AKksia~FkiRkG~pIG~kVTLRg~~m~eFLdrl 82 (172)
T PTZ00156 8 MRKIRIEKLVLNICVGESGDRLTRAAKVLEQLTGQKPVFSK-----ARYTVRSFGIRRNEKIACHVTVRGDKAEEILERG 82 (172)
T ss_pred ccCceeEEEEEEcCcCchHHHHHHHHHHHHHHcCCceEEEE-----hhcccccccccCCCEEEEEEEEchHHHHHHHHHH
Confidence 8999999999999999999999999999 999999999999 44455555555 344444442 222 455554
Q ss_pred H
Q psy1616 75 A 75 (237)
Q Consensus 75 ~ 75 (237)
+
T Consensus 83 i 83 (172)
T PTZ00156 83 L 83 (172)
T ss_pred H
Confidence 4
No 14
>PRK04219 rpl5p 50S ribosomal protein L5P; Reviewed
Probab=98.42 E-value=1e-07 Score=82.62 Aligned_cols=73 Identities=36% Similarity=0.576 Sum_probs=55.5
Q ss_pred CCcceeeeEEEEeecCCcchHhhHHhhh-cccCCCCccccccccccccCccccccee---eEEEEeecc-hhH-HHHHHH
Q psy1616 1 MREVKIRKLCLNICVGESGDRLTRAAKT-KAVDPAKPVAKKGKKDKSKNVMREVKIR---KLCLNICVG-ESG-DRLTRA 74 (237)
Q Consensus 1 M~~i~i~Kl~vni~vGe~g~~l~~A~kv-~~itgqkPV~sk~~k~~y~N~mqvpki~---KI~ln~~vg-es~-d~L~~a 74 (237)
|+.|+|+|+|||||||++++.|..|.++ +.||||+|+.++.++ ...--+|+ .|-+...+- +.. +-|.++
T Consensus 12 m~iPkI~KIvin~gvgea~~~L~~a~~~L~~ITGQkP~~tkAKk-----sIa~FkiRkG~pIG~kVTLRg~~m~~FL~rl 86 (177)
T PRK04219 12 MRKPRIEKVVVNIGVGESGERLTKAEKLLEELTGQKPVRTRAKK-----TIPDFGIRKGEPIGVKVTLRGEKAEEFLKTA 86 (177)
T ss_pred ccCceeeEEEEEcCcHHHHHHHHHHHHHHHHHhCCCceeeeccc-----cccccCccCCCEEEEEEEEccHHHHHHHHHH
Confidence 8999999999999999999999999999 999999999999443 44444554 455555553 323 566665
Q ss_pred HHHH
Q psy1616 75 AKVL 78 (237)
Q Consensus 75 ~~~L 78 (237)
..+.
T Consensus 87 i~iv 90 (177)
T PRK04219 87 LEAV 90 (177)
T ss_pred HHhh
Confidence 5544
No 15
>PRK00010 rplE 50S ribosomal protein L5; Validated
Probab=98.05 E-value=2.5e-06 Score=73.94 Aligned_cols=43 Identities=37% Similarity=0.499 Sum_probs=39.9
Q ss_pred CCcceeeeEEEEeecCCcch---HhhHHhhh-cccCCCCcccccccc
Q psy1616 1 MREVKIRKLCLNICVGESGD---RLTRAAKT-KAVDPAKPVAKKGKK 43 (237)
Q Consensus 1 M~~i~i~Kl~vni~vGe~g~---~l~~A~kv-~~itgqkPV~sk~~k 43 (237)
|+.|+|+|+|||+|||++++ .|..|..+ +.||||+|+.++.++
T Consensus 26 m~iPki~KIvin~gvg~~~~~~~~l~~a~~~L~~ITGQkP~~t~aKk 72 (179)
T PRK00010 26 MQVPKLEKIVLNMGVGEAVADKKLLENAVEDLTLITGQKPVVTKAKK 72 (179)
T ss_pred ccCCceeEEEEEccCcchhhchHHHHHHHHHHHHHhCCceEEEeccc
Confidence 88999999999999999998 89999999 999999999998543
No 16
>CHL00078 rpl5 ribosomal protein L5
Probab=97.98 E-value=3.1e-06 Score=73.48 Aligned_cols=43 Identities=26% Similarity=0.455 Sum_probs=40.1
Q ss_pred CCcceeeeEEEEeecCCcchH---hhHHhhh-cccCCCCcccccccc
Q psy1616 1 MREVKIRKLCLNICVGESGDR---LTRAAKT-KAVDPAKPVAKKGKK 43 (237)
Q Consensus 1 M~~i~i~Kl~vni~vGe~g~~---l~~A~kv-~~itgqkPV~sk~~k 43 (237)
|+.|+|+|+|||||+|++++. |..|..+ +.||||+|+.++.++
T Consensus 27 m~iP~i~KIvin~gvg~~~~~~k~l~~a~~~L~~ITGQkP~~t~AKk 73 (181)
T CHL00078 27 HQVPKLKKIVINRGLGEASQNSKILESSIKELTIITGQKPIITRAKK 73 (181)
T ss_pred ccCCceeEEEEecCchhhhhchHHHHHHHHHHHHHhCCceEEEeecc
Confidence 889999999999999999998 9999999 999999999999543
No 17
>KOG0398|consensus
Probab=92.51 E-value=0.079 Score=48.60 Aligned_cols=49 Identities=20% Similarity=0.344 Sum_probs=35.7
Q ss_pred cceeeeEEEEeecCCcchHhhHHh---hh-cccCCCCccccccccccccCccccccee
Q psy1616 3 EVKIRKLCLNICVGESGDRLTRAA---KT-KAVDPAKPVAKKGKKDKSKNVMREVKIR 56 (237)
Q Consensus 3 ~i~i~Kl~vni~vGe~g~~l~~A~---kv-~~itgqkPV~sk~~k~~y~N~mqvpki~ 56 (237)
-+.|+|||||+++||.-+.-..++ +- ..|||++|...+ ..+-..--||+
T Consensus 120 vP~v~kVVvnc~~~eA~~n~~~l~~am~~~~~ITG~kP~~~~-----ar~dV~twKlR 172 (278)
T KOG0398|consen 120 VPKVQKVVVNCGIGEAAQNDKGLEAAMKDIALITGQKPIKTR-----ARADVATWKLR 172 (278)
T ss_pred CCceeeeeeecccHHhhhhHHHHHHHHHHHHHHhCCCcceee-----ecccCCceeec
Confidence 478999999999999987644433 33 789999999988 33334444444
No 18
>PHA00451 protein kinase
Probab=21.24 E-value=91 Score=30.04 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=16.0
Q ss_pred hhhhhhhhhhhccccCCC-CcceeEee
Q psy1616 146 ELDHLNQKIHKAQSLCLH-HSGNFGFG 171 (237)
Q Consensus 146 ~i~~~~~~f~gi~~~~~d-~~GN~~fG 171 (237)
-|+.| |.||. ||| ||||+-|-
T Consensus 182 ~IRkF---F~GIA--SFDmHSGNiMf~ 203 (362)
T PHA00451 182 MIRKF---FYGIA--SFDMHSGNIMFD 203 (362)
T ss_pred HHHHH---Hhhhh--cccccCCceeeC
Confidence 46666 88885 577 89999885
Done!