Query psy1616
Match_columns 237
No_of_seqs 126 out of 1046
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 22:20:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_D L21, RPL11, 60S ribosom 100.0 1.3E-64 4.4E-69 430.9 14.9 163 46-234 5-168 (172)
2 3iz5_E 60S ribosomal protein L 100.0 2.7E-64 9.2E-69 431.5 12.6 165 44-234 5-170 (180)
3 3j21_E 50S ribosomal protein L 100.0 9.7E-64 3.3E-68 430.0 10.5 170 39-234 9-180 (186)
4 1vq8_D 50S ribosomal protein L 100.0 2.5E-61 8.6E-66 412.3 12.6 164 43-234 7-172 (177)
5 2zkr_d 60S ribosomal protein L 100.0 3.2E-60 1.1E-64 405.6 11.2 165 44-234 6-171 (178)
6 1iq4_A 50S ribosomal protein L 100.0 1E-51 3.6E-56 353.3 13.4 163 29-231 5-172 (179)
7 3r8s_F 50S ribosomal protein L 100.0 6.3E-52 2.2E-56 354.1 10.9 161 31-231 6-171 (177)
8 1mji_A 50S ribosomal protein L 100.0 1.8E-51 6.3E-56 352.5 13.5 163 29-231 8-175 (182)
9 3bbo_H Ribosomal protein L5; l 100.0 4.9E-50 1.7E-54 352.2 7.7 154 27-200 18-176 (220)
10 4a17_D L21, RPL11, 60S ribosom 98.8 1.1E-09 3.6E-14 93.4 3.3 60 1-65 9-72 (172)
11 3iz5_E 60S ribosomal protein L 98.8 1.5E-09 5.2E-14 93.0 2.4 60 1-65 11-74 (180)
12 3j21_E 50S ribosomal protein L 98.6 7.7E-09 2.6E-13 89.0 2.0 73 1-78 20-98 (186)
13 1vq8_D 50S ribosomal protein L 98.6 1.9E-08 6.6E-13 85.9 3.1 60 1-65 14-77 (177)
14 2zkr_d 60S ribosomal protein L 98.5 2.2E-08 7.5E-13 85.5 2.1 71 1-76 12-88 (178)
15 3r8s_F 50S ribosomal protein L 98.5 7.2E-08 2.5E-12 82.2 3.6 60 1-65 25-91 (177)
16 1iq4_A 50S ribosomal protein L 98.3 1.9E-07 6.5E-12 79.8 3.0 43 1-43 26-72 (179)
17 1mji_A 50S ribosomal protein L 98.3 2.4E-07 8.1E-12 79.3 3.0 43 1-43 29-75 (182)
18 3bbo_H Ribosomal protein L5; l 98.3 3.1E-07 1.1E-11 80.8 3.0 43 1-43 41-87 (220)
No 1
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D
Probab=100.00 E-value=1.3e-64 Score=430.91 Aligned_cols=163 Identities=53% Similarity=0.876 Sum_probs=159.8
Q ss_pred ccCcccccceeeEEEEeecchhHHHHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCCCCCCCccceEEEEecCchhc
Q psy1616 46 SKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGERASSFMKPLVVLALPGMYLF 124 (237)
Q Consensus 46 y~N~mqvpki~KI~ln~~vges~d~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~~~~~~~~iG~kvTLRg~~~~ 124 (237)
.+|||++|+|+|||||+|||||+|.|+.|+++|++||||+|++|+||+| ++||||+| |||||+|||||+
T Consensus 5 ~~n~m~vPkI~KIvlN~gvgea~~~L~~A~~~L~~ITGQkPv~tkAKksi~~FkiR~g-------~pIG~kVTLRG~--- 74 (172)
T 4a17_D 5 KENKMREVKIAKLVINCCVGESGDKLTKAAKVLKDLSGQEPVFSRARYTIRSFGIKRN-------EKMAVHVTIRGD--- 74 (172)
T ss_dssp CCCGGGCCEEEEEEEEEECCCSSHHHHHHHHHHHHHHSSCCEEEEECSCBTTTTBCSS-------EEEEEEEEECHH---
T ss_pred cCCcccCcEEEEEEEEcCcHHHHHHHHHHHHHHHHccCCccEEEEeccccccccccCC-------CEEEEEEEEccH---
Confidence 5799999999999999999999999999999999999999999999999 99999999 999999999999
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeecccccccccccCCCCCccceeEEEEcCCcceee
Q psy1616 125 YKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNV 204 (237)
Q Consensus 125 ~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~fei~yd~~~~i~G~di~ivt~~~G~~v 204 (237)
+||+||++|+ ++++ |+ ++.++||.+|||+|||+||++||++|||.++++||||+|||+||||||
T Consensus 75 ------~m~eFL~kll-----rird----f~-l~~~sFD~~GN~sfGi~e~i~Fei~yD~~~~i~GmdI~ivt~rpG~rv 138 (172)
T 4a17_D 75 ------KARDILTRGL-----KVKE----ME-LRKKNFSNTGNFGFGIQEHIDLGMKYDPSTGIFGMDFYVVLERPGTRV 138 (172)
T ss_dssp ------HHHHHHHHHH-----HHTT----TE-ECGGGBCTTSCEEEEECCGGGGTCCCCGGGCCCCEEEEEEEECGGGHH
T ss_pred ------HHHHHHHHHH-----hhhh----cc-CCCcCcCCCceEEEccccccccccccccccCccceeEEEEEcCCccch
Confidence 9999999999 7888 88 899999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCcccChHHHHHHHHHhhC
Q psy1616 205 AHRRRKTGIVGFQHRLTKEDAMKWFQTKML 234 (237)
Q Consensus 205 ~~r~~~~~~ig~~h~~~~~~~~~~~~~~~~ 234 (237)
++|++++++||.+||||+||||+|||++|.
T Consensus 139 ~~r~~~~~~i~~~hrv~keea~~~~~~~~~ 168 (172)
T 4a17_D 139 ARRRRATSRVGNNQMISKEECINWFKTEFE 168 (172)
T ss_dssp HHCSTTCCCCCTTTSCCHHHHHHHHHHHHC
T ss_pred hhcccccCCCCccceeCHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 2
>3iz5_E 60S ribosomal protein L11 (L5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_E 3izc_E 3izs_E 3o58_K 3o5h_K 3u5e_J 3u5i_J 4b6a_J 1s1i_J 2noq_H 3j0q_k 3jyw_J
Probab=100.00 E-value=2.7e-64 Score=431.52 Aligned_cols=165 Identities=56% Similarity=0.870 Sum_probs=160.8
Q ss_pred ccccCcccccceeeEEEEeecchhHHHHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCCCCCCCccceEEEEecCch
Q psy1616 44 DKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGERASSFMKPLVVLALPGMY 122 (237)
Q Consensus 44 ~~y~N~mqvpki~KI~ln~~vges~d~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~~~~~~~~iG~kvTLRg~~ 122 (237)
....|||++|+|+|||||+|||||+|.|+.|+++|++||||+|++|+||+| ++||||+| |||||+|||||+
T Consensus 5 ~~~~n~m~vPkI~KIvlN~gvGea~~~L~~A~~~L~~ITGQkPv~tkAKksia~FkiR~g-------~pIG~kVTLRG~- 76 (180)
T 3iz5_E 5 KKQLNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRN-------EKIACYVTIRGE- 76 (180)
T ss_dssp TTTCCTTSSCEEEEEEEEEECCTTTSCSSTHHHHHHHHHSSCCEEECCCSCCSSSCCCSS-------SCCEEEEEECHH-
T ss_pred cccCCCccCcEEEEEEEEcCCchhHHHHHHHHHHHHHhcCCceEEEEcccccccccccCC-------CEEEEEEEEccH-
Confidence 347899999999999999999999999999999999999999999999999 99999999 999999999999
Q ss_pred hcccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeecccccccccccCCCCCccceeEEEEcCCcce
Q psy1616 123 LFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGF 202 (237)
Q Consensus 123 ~~~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~fei~yd~~~~i~G~di~ivt~~~G~ 202 (237)
+||+||++|+ ++++ |+ ++.++||.+|||+|||+||++|||+|||.++++||||+|||+||||
T Consensus 77 --------~m~eFL~kli-----rird----f~-l~~~sFD~~GN~sfGI~E~i~Fei~yD~~~~i~GmdI~ivt~RpG~ 138 (180)
T 3iz5_E 77 --------KAMQLLESGL-----KVKE----YE-LLRRNFSDTGCFGFGIQEHIDLGMKYDPSTGIYGMDFFVVLERAGY 138 (180)
T ss_dssp --------HHHHHHHHHH-----HSSC----SC-CCSTTBCTTSCEEEECCTTSSSCCSSSCSCCCCCCEEEEEEECGGG
T ss_pred --------HHHHHHHHHH-----hhhh----cc-cCccccCCCceeeeccchheeeecccccccCccceeEEEEEcCCcc
Confidence 9999999999 7888 88 9999999999999999999999999999999999999999999999
Q ss_pred eecccccccCCCCCCcccChHHHHHHHHHhhC
Q psy1616 203 NVAHRRRKTGIVGFQHRLTKEDAMKWFQTKML 234 (237)
Q Consensus 203 ~v~~r~~~~~~ig~~h~~~~~~~~~~~~~~~~ 234 (237)
||++|++++++||.+||||+||||+|||++|.
T Consensus 139 rv~~r~~~~~~i~~~hrv~keea~~~~~~~~~ 170 (180)
T 3iz5_E 139 RVSRRRRCKARVGIHQRVTKEDAMKWFQVKYE 170 (180)
T ss_dssp HHHHSSSSCCCCCTTTSCCHHHHHHHHHHSCC
T ss_pred chhhcccccCCCCccceeCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999985
No 3
>3j21_E 50S ribosomal protein L5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=9.7e-64 Score=429.96 Aligned_cols=170 Identities=39% Similarity=0.621 Sum_probs=163.6
Q ss_pred cccccccccCcccccceeeEEEEeecchhHHHHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCCCCCCCccceEEEE
Q psy1616 39 KKGKKDKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGERASSFMKPLVVLA 117 (237)
Q Consensus 39 sk~~k~~y~N~mqvpki~KI~ln~~vges~d~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~~~~~~~~iG~kvT 117 (237)
..+.+.+++|||++|+|+|||||+|||+|++.|+.|.++|++||||+|++|+||+| ++||+|+| |||||+||
T Consensus 9 ~~iL~~~~~N~m~vPkI~KIvlN~gvgea~~~L~~a~~~Le~ITGQkPv~tkAKksia~FkiRkg-------~pIG~kVT 81 (186)
T 3j21_E 9 EQILADWEAHPMRRPRIEKVTINIGVGESGERLTKAEIMLQQLTGQKPIRRKAKKTNRDFGIRRG-------EPIAVKVT 81 (186)
T ss_dssp HHHHHHHHHCTTSSCEEEEEEEEECSCCCTTSCCSHHHHHHHHHSSCCEEECCCSCCSSSCCSTT-------CCCEEEEE
T ss_pred HHHHhhccCCchhccEeeEEEEEcCcchHHHHHHHHHHHHHHhhCCCcEEEEccccccccCcCCC-------CceeeEEE
Confidence 34677889999999999999999999999999999999999999999999999999 99999999 99999999
Q ss_pred ecCchhcccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeeccccccc-ccccCCCCCccceeEEEE
Q psy1616 118 LPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVV 196 (237)
Q Consensus 118 LRg~~~~~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~f-ei~yd~~~~i~G~di~iv 196 (237)
|||+ +||+||++|+++++ | |++.++||.+|||+|||+||++| ||+|||+++++||||+||
T Consensus 82 LRG~---------~myeFL~rll~v~d---------~-gl~~~sFD~~GN~sfGi~E~i~FPeI~yD~~~~i~GmdI~iv 142 (186)
T 3j21_E 82 LRGP---------KAYELLKRLLAAVD---------N-RLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVT 142 (186)
T ss_dssp ECSH---------HHHHHHHHHHHHSC---------S-SBCSSSBCTTSCEEECCCSCCCCTTTSSCSSCCCCCCEEEEE
T ss_pred EcCh---------hHHHHHHHHHHHhc---------c-CCCccccCCCceEEEcCcceeecccccccccccccceeEEEE
Confidence 9999 99999999999983 4 66679999999999999999999 999999999999999999
Q ss_pred cCCcceeecccccccCCCCCCcccChHHHHHHHHHhhC
Q psy1616 197 LGRPGFNVAHRRRKTGIVGFQHRLTKEDAMKWFQTKML 234 (237)
Q Consensus 197 t~~~G~~v~~r~~~~~~ig~~h~~~~~~~~~~~~~~~~ 234 (237)
|+||||||++|++++++||.+||||+||||+|||++|.
T Consensus 143 t~rpG~rv~~r~~~~~~i~~~hrv~keea~~~~~~~~~ 180 (186)
T 3j21_E 143 LERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFG 180 (186)
T ss_dssp EECSTTHHHHSSTTCCCCCSTTSCCHHHHHHHHHHHSS
T ss_pred ecCCcceeeecccccCcCCcceeeCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999986
No 4
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ...
Probab=100.00 E-value=2.5e-61 Score=412.25 Aligned_cols=164 Identities=32% Similarity=0.506 Sum_probs=130.4
Q ss_pred cccccCcccccceeeEEEEeecchhHHHHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCCCCCCCccceEEEEecCc
Q psy1616 43 KDKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGERASSFMKPLVVLALPGM 121 (237)
Q Consensus 43 k~~y~N~mqvpki~KI~ln~~vges~d~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~~~~~~~~iG~kvTLRg~ 121 (237)
..+++|+|++|+|+|||||+|+|++++.|+.|+++|++||||+|++|+||+| ++||||+| |||||+|||||+
T Consensus 7 ~~~~~N~m~vPki~KIvln~gvgea~~~L~~a~~~L~~ITGQkPv~tkAKksia~FkiRkg-------~pIG~kVTLRG~ 79 (177)
T 1vq8_D 7 SGGDFHEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREG-------DPIGAKVTLRDE 79 (177)
T ss_dssp ----CCTTTSCEEEEEEEEEECCC-----CTTHHHHHHHTSSCCEEEECCSCBTTTBCCSS-------SEEEEEEEECTH
T ss_pred ccccCCchhcCEEEEEEEEcCcchHHHHHHHHHHHHHHHhCCCcEEEecccccccccccCC-------CeeEEEEEEccH
Confidence 3457999999999999999999999999999999999999999999999999 99999999 999999999999
Q ss_pred hhcccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeeccccccc-ccccCCCCCccceeEEEEcCCc
Q psy1616 122 YLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRP 200 (237)
Q Consensus 122 ~~~~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~f-ei~yd~~~~i~G~di~ivt~~~ 200 (237)
+||+||++|+. +++ ++.++||.+|||+|||+||++| ||+|||+++++||||+|||+||
T Consensus 80 ---------~myeFL~rllr-----vrd-------l~~~sfd~~GN~sfGi~e~i~FPEI~yD~~~~i~GmdI~ivt~rp 138 (177)
T 1vq8_D 80 ---------MAEEFLQTALP-----LAE-------LATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRP 138 (177)
T ss_dssp ---------HHHHHHHHHGG-----GSC-------CCGGGBCSSSCEEEC--------------------CEEEEEEECG
T ss_pred ---------HHHHHHHHHHH-----hcc-------CCccccCCCceEEEecceeecCccccccccCCcccceEEEEeCCC
Confidence 99999999994 444 3348999999999999999999 9999999999999999999999
Q ss_pred ceeecccccccCCCCCCcccChHHHHHHHHHhhC
Q psy1616 201 GFNVAHRRRKTGIVGFQHRLTKEDAMKWFQTKML 234 (237)
Q Consensus 201 G~~v~~r~~~~~~ig~~h~~~~~~~~~~~~~~~~ 234 (237)
||||++|+|++++||.+|||++||||+|||++|.
T Consensus 139 G~rv~~r~~~~~~i~~~hr~~k~ea~~~~~~~~~ 172 (177)
T 1vq8_D 139 GYRVAKRDKASRSIPTKHRLNPADAVAFIESTYD 172 (177)
T ss_dssp GGGGGTSSTTCCCCCGGGSCCHHHHHHHHHTTTS
T ss_pred ccchhhhhhccccCCCCcEeCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999985
No 5
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=3.2e-60 Score=405.65 Aligned_cols=165 Identities=63% Similarity=1.024 Sum_probs=157.8
Q ss_pred ccccCcccccceeeEEEEeecchhHHHHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCCCCCCCccceEEEEecCch
Q psy1616 44 DKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGERASSFMKPLVVLALPGMY 122 (237)
Q Consensus 44 ~~y~N~mqvpki~KI~ln~~vges~d~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~~~~~~~~iG~kvTLRg~~ 122 (237)
.+.+|||++|+|+|||||+|+|++++.|+.|.++|++||||+|++|+||+| ++||||+| |||||+|||||+
T Consensus 6 ~~~~n~m~vPki~KIvln~gvgea~~~L~~a~~~L~~ITGQkPv~tkAKksia~FkiR~g-------~pIG~kVTLRG~- 77 (178)
T 2zkr_d 6 GEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRN-------EKIAVHCTVRGA- 77 (178)
T ss_dssp ----CTTTSCEEEEEEEEECCSSSCSSSCTTHHHHHHHHSSCCEEECCCSCCSSSCCCSS-------SCCEEEEEECHH-
T ss_pred cccCCcccccEEEEEEEECCchhHHHHHHHHHHHHHHHhCCCeEEEecccccccccccCC-------CEEEEEEEEccH-
Confidence 347899999999999999999999999999999999999999999999999 99999999 999999999999
Q ss_pred hcccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeecccccccccccCCCCCccceeEEEEcCCcce
Q psy1616 123 LFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGF 202 (237)
Q Consensus 123 ~~~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~fei~yd~~~~i~G~di~ivt~~~G~ 202 (237)
+||+||++|++ +++ |+ ++.++||.+|||+|||+||++|||+|||.++++||||+||+++|||
T Consensus 78 --------~myeFL~rll~-----vrd----f~-l~~~sfd~~GN~sfGi~E~i~FEi~yD~~~~i~GmdItivL~~~G~ 139 (178)
T 2zkr_d 78 --------KAEEILEKGLK-----VRE----YE-LRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGF 139 (178)
T ss_dssp --------HHHHHHHHHHH-----HSC----SC-BCTTTBCTTSCEEESSSSCSSSSCCCSSSCCSSCEEEEEEEECTTT
T ss_pred --------HHHHHHHHHHh-----hcc----cc-ccccCcCCCceEEEecchheeeeeeecccCCccCccEEEEEcCCCc
Confidence 99999999999 677 88 8889999999999999999999999999999999999999999999
Q ss_pred eecccccccCCCCCCcccChHHHHHHHHHhhC
Q psy1616 203 NVAHRRRKTGIVGFQHRLTKEDAMKWFQTKML 234 (237)
Q Consensus 203 ~v~~r~~~~~~ig~~h~~~~~~~~~~~~~~~~ 234 (237)
++++|++++++||.+||||+||||+|||++|.
T Consensus 140 pf~~r~~~~~~i~~~hr~~k~e~~~~~~~~~~ 171 (178)
T 2zkr_d 140 SIADKKRRTGCIGAKHRISKEEAMRWFQQKYD 171 (178)
T ss_dssp HHHHSSSSCCCCCTTTSCCHHHHHHHHHTTTC
T ss_pred EEeecccccccCCCCceECHHHHHHHHHHhCC
Confidence 99999999999999999999999999999985
No 6
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1
Probab=100.00 E-value=1e-51 Score=353.27 Aligned_cols=163 Identities=23% Similarity=0.294 Sum_probs=153.6
Q ss_pred cccCCCCccccccccccccCcccccceeeEEEEeecchhH---HHHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCC
Q psy1616 29 KAVDPAKPVAKKGKKDKSKNVMREVKIRKLCLNICVGESG---DRLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGE 104 (237)
Q Consensus 29 ~~itgqkPV~sk~~k~~y~N~mqvpki~KI~ln~~vges~---d~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~ 104 (237)
+..|....++...+|++|+|+|++|+|+|||||+|||++. +.|+.|..+|++||||+|++|+||+| ++||+|+|
T Consensus 5 ~~~Y~~~i~~~L~~k~~y~n~m~vP~i~KIvin~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkksia~FkiR~g-- 82 (179)
T 1iq4_A 5 KEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLRQG-- 82 (179)
T ss_dssp HHHHHHTHHHHHHHHHCCSSGGGSCCEEEEEEEEECSCSSSCHHHHHHHHHHHHHHHSSCCEEEECCSCSCSSSCCTT--
T ss_pred HHHHHHHHHHHHHHHhCCCCcccCceeEEEEEEecCchhhcChHHHHHHHHHHHHHhCCCcEEeecccccccccccCC--
Confidence 3445566778888999999999999999999999999985 69999999999999999999999999 99999999
Q ss_pred CCCCCccceEEEEecCchhcccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeeccccccc-ccccC
Q psy1616 105 RASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDL-GIKYD 183 (237)
Q Consensus 105 ~~~~~~~iG~kvTLRg~~~~~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~f-ei~yd 183 (237)
|||||+|||||+ +||+||++++++++||+++ |+|++.++||++|||+|||+||++| ||+||
T Consensus 83 -----~pIG~kVTLRg~---------~my~FL~rll~v~lPrird----f~Gl~~~sfd~~GN~sfGi~e~~~FPEi~yD 144 (179)
T 1iq4_A 83 -----MPIGAKVTLRGE---------RMYEFLDKLISVSLPRARD----FRGVSKKSFDGRGNYTLGIKEQLIFPEIDYD 144 (179)
T ss_dssp -----CEEEEEEEECHH---------HHHHHHHHHHHTTGGGSTT----CCCBCSSCBCSSSEEEEEESCGGGSTTCCGG
T ss_pred -----CeeEEEEEEccH---------HHHHHHHHHHHHhcccccc----cccCCccccCCCceEEEecchhhcCcccccc
Confidence 999999999999 9999999999999999999 9999999999999999999999999 99999
Q ss_pred CCCCccceeEEEEcCCcceeecccccccCCCCCCcccChHHHHHHHHH
Q psy1616 184 PSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDAMKWFQT 231 (237)
Q Consensus 184 ~~~~i~G~di~ivt~~~G~~v~~r~~~~~~ig~~h~~~~~~~~~~~~~ 231 (237)
++++++||||+|||+|. |.+||...+..
T Consensus 145 ~~~~i~GmdI~ivtta~--------------------td~ea~~LL~~ 172 (179)
T 1iq4_A 145 KVNKVRGMDIVIVTTAN--------------------TDEEARELLAL 172 (179)
T ss_dssp GSSCCCCEEEEEEESCS--------------------SHHHHHHHHHH
T ss_pred ccCCccCceEEEEeeeC--------------------CHHHHHHHHHH
Confidence 99999999999999985 57888887765
No 7
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ...
Probab=100.00 E-value=6.3e-52 Score=354.08 Aligned_cols=161 Identities=22% Similarity=0.289 Sum_probs=151.2
Q ss_pred cCCCCccccccccccccCcccccceeeEEEEeecchhH-H--HHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCCCC
Q psy1616 31 VDPAKPVAKKGKKDKSKNVMREVKIRKLCLNICVGESG-D--RLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGERA 106 (237)
Q Consensus 31 itgqkPV~sk~~k~~y~N~mqvpki~KI~ln~~vges~-d--~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~~~ 106 (237)
.|....++...++++|+|+|++|+|+|||||+|||+++ | .|+.|.++|++||||+|++|+||+| ++||+|+|
T Consensus 6 ~Y~~~v~~~L~~~~~y~N~m~vP~i~KIvln~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkksi~~FkiR~g---- 81 (177)
T 3r8s_F 6 YYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQG---- 81 (177)
T ss_dssp HHHHHHHHHHHHHHTCSSTTSSCCEEEEEEBCCCCCTTSCHHHHHHHHHHHHHHSSSCCEEEECSSCBGGGTBCTT----
T ss_pred HHHHHHHHHHHHhhCCCCccccceeeEEEEEecCchhhhCHHHHHHHHHHHHHhhCCCceEeecccccccCCCCCC----
Confidence 34455667778999999999999999999999999986 4 9999999999999999999999999 99999999
Q ss_pred CCCccceEEEEecCchhcccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeeccccccc-ccccCCC
Q psy1616 107 SSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDL-GIKYDPS 185 (237)
Q Consensus 107 ~~~~~iG~kvTLRg~~~~~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~f-ei~yd~~ 185 (237)
|||||+|||||+ +||+||++++++++|++++ |+|++.++||++|||+|||+||++| ||+||++
T Consensus 82 ---~piG~kVTLRg~---------~m~~FL~kli~~vlPrird----f~Gl~~~sfd~~GN~~fGi~e~~~FPEi~yD~~ 145 (177)
T 3r8s_F 82 ---YPIGCKVTLRGE---------RMWEFFERLITIAVPRIRD----FRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKV 145 (177)
T ss_dssp ---CEEEEEEEECSH---------HHHHHHHHHHHTTTTTSTT----CCCCCTTCBCSSSCEECCCSCGGGSSSSCSSSC
T ss_pred ---CEeeEEEEEccH---------HHHHHHHHHHHHhcccccc----ccccCccccCCCceEeeeccccccCCCcccccc
Confidence 999999999999 9999999999999999999 9999999999999999999999999 9999999
Q ss_pred CCccceeEEEEcCCcceeecccccccCCCCCCcccChHHHHHHHHH
Q psy1616 186 IGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDAMKWFQT 231 (237)
Q Consensus 186 ~~i~G~di~ivt~~~G~~v~~r~~~~~~ig~~h~~~~~~~~~~~~~ 231 (237)
++++||||+|||+|. |.+||..++..
T Consensus 146 ~~i~GmdI~ivtta~--------------------td~ea~~LL~~ 171 (177)
T 3r8s_F 146 DRVRGLDITITTTAK--------------------SDEEGRALLAA 171 (177)
T ss_dssp CSCCCCBCEEEESCS--------------------SHHHHHHHHHH
T ss_pred CCccceeEEEEeCcC--------------------CHHHHHHHHHH
Confidence 999999999999985 47888877765
No 8
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=100.00 E-value=1.8e-51 Score=352.52 Aligned_cols=163 Identities=21% Similarity=0.245 Sum_probs=154.0
Q ss_pred cccCCCCccccccccccccCcccccceeeEEEEeecchhH---HHHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCC
Q psy1616 29 KAVDPAKPVAKKGKKDKSKNVMREVKIRKLCLNICVGESG---DRLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGE 104 (237)
Q Consensus 29 ~~itgqkPV~sk~~k~~y~N~mqvpki~KI~ln~~vges~---d~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~ 104 (237)
+..|....++...+|++|+|+|++|+|+|||||+|+|+++ +.|+.|..+|++||||+|++|+||+| ++||+|+|
T Consensus 8 ~~~Y~~~i~~~L~~kf~y~n~m~vP~i~KIvin~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkksia~FkiR~g-- 85 (182)
T 1mji_A 8 KRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKLRKG-- 85 (182)
T ss_dssp HHHHHHTHHHHHHHHSCCSSGGGSCCEEEEEEEEECTTTCCCHHHHHHHHHHHHHHHTSCCEEEECCSCCCCSSSSCC--
T ss_pred HHHHHHHHHHHHHHHhCCCCcccCceeeEEEEEcCCchhhhChHHHHHHHHHHHHHhCCCcEEeecccccccccccCC--
Confidence 4455667788888999999999999999999999999985 68999999999999999999999999 99999999
Q ss_pred CCCCCccceEEEEecCchhcccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeeccccccc-ccccC
Q psy1616 105 RASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDL-GIKYD 183 (237)
Q Consensus 105 ~~~~~~~iG~kvTLRg~~~~~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~f-ei~yd 183 (237)
|||||+|||||+ +||+||++++++++||+++ |+|++.++||++|||+|||+||++| ||+||
T Consensus 86 -----~pIG~kVTLRg~---------~my~FL~rll~v~lPrird----f~Gl~~~sfd~~GN~sfGi~e~~~FPEi~yD 147 (182)
T 1mji_A 86 -----MPIGLRVTLRRD---------RMWIFLEKLLNVALPRIRD----FRGLNPNSFDGRGNYNLGLREQLIFPEITYD 147 (182)
T ss_dssp -----SEEEEEEEECHH---------HHHHHHHHHHHTTTTTCSS----CCCBCTTCBCSSSEEEEEECSCEECSSCEEC
T ss_pred -----CeeEEEEEEccH---------HHHHHHHHHHHHhcccccc----ccccCccccCCCceEEEecchhhcCCccccc
Confidence 999999999999 9999999999999999999 9999999999999999999999999 99999
Q ss_pred CCCCccceeEEEEcCCcceeecccccccCCCCCCcccChHHHHHHHHH
Q psy1616 184 PSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDAMKWFQT 231 (237)
Q Consensus 184 ~~~~i~G~di~ivt~~~G~~v~~r~~~~~~ig~~h~~~~~~~~~~~~~ 231 (237)
++++++||||+|||+|. |++||...+..
T Consensus 148 ~~~~i~GmdItivtta~--------------------td~ea~~LL~~ 175 (182)
T 1mji_A 148 MVDALRGMDIAVVTTAE--------------------TDEEARALLEL 175 (182)
T ss_dssp CTTTSCCEEEEEEESCS--------------------SHHHHHHHHHH
T ss_pred ccCCccCceEEEEeccC--------------------CHHHHHHHHHH
Confidence 99999999999999985 57888887765
No 9
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=100.00 E-value=4.9e-50 Score=352.25 Aligned_cols=154 Identities=19% Similarity=0.205 Sum_probs=149.3
Q ss_pred hhcccCCCCccccccccccccCcccccceeeEEEEeecchhHH---HHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCC
Q psy1616 27 KTKAVDPAKPVAKKGKKDKSKNVMREVKIRKLCLNICVGESGD---RLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNP 102 (237)
Q Consensus 27 kv~~itgqkPV~sk~~k~~y~N~mqvpki~KI~ln~~vges~d---~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g 102 (237)
+++..|....++...++++|+|+|++|+|+|||||+|+|++++ .|+.|..+|++||||+|++|+||++ ++||||+|
T Consensus 18 rLk~~Y~~~v~~~L~~k~~y~N~m~vPki~KIvin~gvgea~~d~k~L~~A~~~L~~ITGQkPv~tkAKksIa~FkiRkg 97 (220)
T 3bbo_H 18 RLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPVKTKAKTSIAGFKVREG 97 (220)
T ss_dssp CHHHHHTTTHHHHHHHSSCCCCSSSSCCEEEEECCCCCCCSSCCHHHHHHHHHHHHHHTCSCCCCCBCCSCCCSSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCceEEEEEEEcccchhhhchHHHHHHHHHHHHHhCCCcEEeecccccccccccCC
Confidence 4467888899999999999999999999999999999999884 9999999999999999999999999 99999999
Q ss_pred CCCCCCCccceEEEEecCchhcccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeeccccccc-ccc
Q psy1616 103 GERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDL-GIK 181 (237)
Q Consensus 103 ~~~~~~~~~iG~kvTLRg~~~~~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~f-ei~ 181 (237)
|||||+|||||+ +||+||++|+++++||+++ |+|++.++||++|||+|||+||++| ||+
T Consensus 98 -------~pIG~kVTLRG~---------~MyeFLdrll~iaLPRird----f~Gl~~~sFD~~GN~sfGi~e~~~FPEI~ 157 (220)
T 3bbo_H 98 -------MTLGIAVTLRGN---------LMYSFLDRLINLALPRTRD----FQGVNPNSFDGHGNYSVGFREQSVFPEIK 157 (220)
T ss_dssp -------CBCCCCCEECTH---------HHHHHHHHHHHSSTTTSSS----CCCCCCSCCCSSSEEEEEECSCCCCSSCC
T ss_pred -------CeeEEEEEEccH---------HHHHHHHHHHHHhcccccc----ccccCccccCCCceEEEeccccccCCCcc
Confidence 999999999999 9999999999999999999 9999999999999999999999999 999
Q ss_pred cCCCCCccceeEEEEcCCc
Q psy1616 182 YDPSIGIYGLDFYVVLGRP 200 (237)
Q Consensus 182 yd~~~~i~G~di~ivt~~~ 200 (237)
||+.++++||||+|||+++
T Consensus 158 yD~~~~i~GmdItivTtA~ 176 (220)
T 3bbo_H 158 PEIVGKARGMDVCITTTAK 176 (220)
T ss_dssp TTSCSSCCCEEEEEEESCS
T ss_pred cCccCCcccceEEEEeccC
Confidence 9999999999999999996
No 10
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D
Probab=98.84 E-value=1.1e-09 Score=93.36 Aligned_cols=60 Identities=45% Similarity=0.772 Sum_probs=49.4
Q ss_pred CCcceeeeEEEEeecCCcchHhhHHhhh-cccCCCCccccccccccccCccccccee---eEEEEeecc
Q psy1616 1 MREVKIRKLCLNICVGESGDRLTRAAKT-KAVDPAKPVAKKGKKDKSKNVMREVKIR---KLCLNICVG 65 (237)
Q Consensus 1 M~~i~i~Kl~vni~vGe~g~~l~~A~kv-~~itgqkPV~sk~~k~~y~N~mqvpki~---KI~ln~~vg 65 (237)
|+.|+|+|+||||||||+++.|+.|.++ +.||||+||.++.+ ....--+|+ .|-+.+.+-
T Consensus 9 m~vPkI~KIvlN~gvgea~~~L~~A~~~L~~ITGQkPv~tkAK-----ksi~~FkiR~g~pIG~kVTLR 72 (172)
T 4a17_D 9 MREVKIAKLVINCCVGESGDKLTKAAKVLKDLSGQEPVFSRAR-----YTIRSFGIKRNEKMAVHVTIR 72 (172)
T ss_dssp GGCCEEEEEEEEEECCCSSHHHHHHHHHHHHHHSSCCEEEEEC-----SCBTTTTBCSSEEEEEEEEEC
T ss_pred ccCcEEEEEEEEcCcHHHHHHHHHHHHHHHHccCCccEEEEec-----cccccccccCCCEEEEEEEEc
Confidence 8999999999999999999999999999 99999999999944 344445554 455555553
No 11
>3iz5_E 60S ribosomal protein L11 (L5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_E 3izc_E 3izs_E 3o58_K 3o5h_K 3u5e_J 3u5i_J 4b6a_J 1s1i_J 2noq_H 3j0q_k 3jyw_J
Probab=98.79 E-value=1.5e-09 Score=92.97 Aligned_cols=60 Identities=45% Similarity=0.718 Sum_probs=49.1
Q ss_pred CCcceeeeEEEEeecCCcchHhhHHhhh-cccCCCCccccccccccccCccccccee---eEEEEeecc
Q psy1616 1 MREVKIRKLCLNICVGESGDRLTRAAKT-KAVDPAKPVAKKGKKDKSKNVMREVKIR---KLCLNICVG 65 (237)
Q Consensus 1 M~~i~i~Kl~vni~vGe~g~~l~~A~kv-~~itgqkPV~sk~~k~~y~N~mqvpki~---KI~ln~~vg 65 (237)
|+.|+|+|+||||||||+++.|+.|.++ +.||||+||.++.+ ....--+|+ .|-+.+.+-
T Consensus 11 m~vPkI~KIvlN~gvGea~~~L~~A~~~L~~ITGQkPv~tkAK-----ksia~FkiR~g~pIG~kVTLR 74 (180)
T 3iz5_E 11 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKAR-----YTVRSFGIRRNEKIACYVTIR 74 (180)
T ss_dssp TSSCEEEEEEEEEECCTTTSCSSTHHHHHHHHHSSCCEEECCC-----SCCSSSCCCSSSCCEEEEEEC
T ss_pred ccCcEEEEEEEEcCCchhHHHHHHHHHHHHHhcCCceEEEEcc-----cccccccccCCCEEEEEEEEc
Confidence 8999999999999999999999999999 99999999999944 344555554 355555553
No 12
>3j21_E 50S ribosomal protein L5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.63 E-value=7.7e-09 Score=88.95 Aligned_cols=73 Identities=34% Similarity=0.567 Sum_probs=53.4
Q ss_pred CCcceeeeEEEEeecCCcchHhhHHhhh-cccCCCCccccccccccccCccccccee---eEEEEeecc-hhH-HHHHHH
Q psy1616 1 MREVKIRKLCLNICVGESGDRLTRAAKT-KAVDPAKPVAKKGKKDKSKNVMREVKIR---KLCLNICVG-ESG-DRLTRA 74 (237)
Q Consensus 1 M~~i~i~Kl~vni~vGe~g~~l~~A~kv-~~itgqkPV~sk~~k~~y~N~mqvpki~---KI~ln~~vg-es~-d~L~~a 74 (237)
|+.|+|+|+||||||||+++.|..|.++ +.||||+||.++.++ ...--+|+ .|-+.+.+- +.. +-|.+.
T Consensus 20 m~vPkI~KIvlN~gvgea~~~L~~a~~~Le~ITGQkPv~tkAKk-----sia~FkiRkg~pIG~kVTLRG~~myeFL~rl 94 (186)
T 3j21_E 20 MRRPRIEKVTINIGVGESGERLTKAEIMLQQLTGQKPIRRKAKK-----TNRDFGIRRGEPIAVKVTLRGPKAYELLKRL 94 (186)
T ss_dssp TSSCEEEEEEEEECSCCCTTSCCSHHHHHHHHHSSCCEEECCCS-----CCSSSCCSTTCCCEEEEEECSHHHHHHHHHH
T ss_pred hhccEeeEEEEEcCcchHHHHHHHHHHHHHHhhCCCcEEEEccc-----cccccCcCCCCceeeEEEEcChhHHHHHHHH
Confidence 8999999999999999999999999999 999999999998544 33333443 344444443 222 455555
Q ss_pred HHHH
Q psy1616 75 AKVL 78 (237)
Q Consensus 75 ~~~L 78 (237)
+.+.
T Consensus 95 l~v~ 98 (186)
T 3j21_E 95 LAAV 98 (186)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 4443
No 13
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ...
Probab=98.58 E-value=1.9e-08 Score=85.87 Aligned_cols=60 Identities=27% Similarity=0.477 Sum_probs=43.6
Q ss_pred CCcceeeeEEEEeecCCcchHhhHHhhh-cccCCCCccccccccccccCccccccee---eEEEEeecc
Q psy1616 1 MREVKIRKLCLNICVGESGDRLTRAAKT-KAVDPAKPVAKKGKKDKSKNVMREVKIR---KLCLNICVG 65 (237)
Q Consensus 1 M~~i~i~Kl~vni~vGe~g~~l~~A~kv-~~itgqkPV~sk~~k~~y~N~mqvpki~---KI~ln~~vg 65 (237)
|+.|+|+|+||||||||+++.|..|.++ +.|+||+||.++.++ ...--+|+ .|-+.+.+-
T Consensus 14 m~vPki~KIvln~gvgea~~~L~~a~~~L~~ITGQkPv~tkAKk-----sia~FkiRkg~pIG~kVTLR 77 (177)
T 1vq8_D 14 MREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKR-----TVGEFDIREGDPIGAKVTLR 77 (177)
T ss_dssp TTSCEEEEEEEEEECCC-----CTTHHHHHHHTSSCCEEEECCS-----CBTTTBCCSSSEEEEEEEEC
T ss_pred hhcCEEEEEEEEcCcchHHHHHHHHHHHHHHHhCCCcEEEeccc-----ccccccccCCCeeEEEEEEc
Confidence 8999999999999999999999999999 999999999999543 22333443 455655553
No 14
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=98.53 E-value=2.2e-08 Score=85.53 Aligned_cols=71 Identities=49% Similarity=0.786 Sum_probs=52.7
Q ss_pred CCcceeeeEEEEeecCCcchHhhHHhhh-cccCCCCccccccccccccCccccccee---eEEEEeecc-hhH-HHHHHH
Q psy1616 1 MREVKIRKLCLNICVGESGDRLTRAAKT-KAVDPAKPVAKKGKKDKSKNVMREVKIR---KLCLNICVG-ESG-DRLTRA 74 (237)
Q Consensus 1 M~~i~i~Kl~vni~vGe~g~~l~~A~kv-~~itgqkPV~sk~~k~~y~N~mqvpki~---KI~ln~~vg-es~-d~L~~a 74 (237)
|+.|+|+|+||||||||+++.|..|.++ +.||||+||.++.++ ...--+|+ .|-+.+.+- +.. +-|.+.
T Consensus 12 m~vPki~KIvln~gvgea~~~L~~a~~~L~~ITGQkPv~tkAKk-----sia~FkiR~g~pIG~kVTLRG~~myeFL~rl 86 (178)
T 2zkr_d 12 MRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARY-----TVRSFGIRRNEKIAVHCTVRGAKAEEILEKG 86 (178)
T ss_dssp TTSCEEEEEEEEECCSSSCSSSCTTHHHHHHHHSSCCEEECCCS-----CCSSSCCCSSSCCEEEEEECHHHHHHHHHHH
T ss_pred ccccEEEEEEEECCchhHHHHHHHHHHHHHHHhCCCeEEEeccc-----ccccccccCCCEEEEEEEEccHHHHHHHHHH
Confidence 8999999999999999999999999999 999999999999553 33333333 355555553 222 455554
Q ss_pred HH
Q psy1616 75 AK 76 (237)
Q Consensus 75 ~~ 76 (237)
+.
T Consensus 87 l~ 88 (178)
T 2zkr_d 87 LK 88 (178)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 15
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ...
Probab=98.46 E-value=7.2e-08 Score=82.25 Aligned_cols=60 Identities=30% Similarity=0.445 Sum_probs=47.9
Q ss_pred CCcceeeeEEEEeecCCcch---HhhHHhhh-cccCCCCccccccccccccCcccccceee---EEEEeecc
Q psy1616 1 MREVKIRKLCLNICVGESGD---RLTRAAKT-KAVDPAKPVAKKGKKDKSKNVMREVKIRK---LCLNICVG 65 (237)
Q Consensus 1 M~~i~i~Kl~vni~vGe~g~---~l~~A~kv-~~itgqkPV~sk~~k~~y~N~mqvpki~K---I~ln~~vg 65 (237)
|+.|+|+|+||||||||+++ .|..|.++ +.|+||+||.++.++ ...--+|++ |-+.+.+-
T Consensus 25 m~vP~i~KIvln~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkk-----si~~FkiR~g~piG~kVTLR 91 (177)
T 3r8s_F 25 MQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARK-----SVAGFKIRQGYPIGCKVTLR 91 (177)
T ss_dssp TSSCCEEEEEEBCCCCCTTSCHHHHHHHHHHHHHHSSSCCEEEECSS-----CBGGGTBCTTCEEEEEEEEC
T ss_pred cccceeeEEEEEecCchhhhCHHHHHHHHHHHHHhhCCCceEeeccc-----ccccCCCCCCCEeeEEEEEc
Confidence 89999999999999999973 89999999 999999999998543 334444543 55655553
No 16
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1
Probab=98.33 E-value=1.9e-07 Score=79.75 Aligned_cols=43 Identities=30% Similarity=0.510 Sum_probs=40.1
Q ss_pred CCcceeeeEEEEeecCCc---chHhhHHhhh-cccCCCCcccccccc
Q psy1616 1 MREVKIRKLCLNICVGES---GDRLTRAAKT-KAVDPAKPVAKKGKK 43 (237)
Q Consensus 1 M~~i~i~Kl~vni~vGe~---g~~l~~A~kv-~~itgqkPV~sk~~k 43 (237)
|+.|+|+|+||||||||+ ++.|..|.++ +.|+||+||.++.++
T Consensus 26 m~vP~i~KIvin~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkk 72 (179)
T 1iq4_A 26 MQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKK 72 (179)
T ss_dssp GGSCCEEEEEEEEECSCSSSCHHHHHHHHHHHHHHHSSCCEEEECCS
T ss_pred ccCceeEEEEEEecCchhhcChHHHHHHHHHHHHHhCCCcEEeeccc
Confidence 899999999999999999 5899999999 999999999999554
No 17
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=98.30 E-value=2.4e-07 Score=79.34 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=40.1
Q ss_pred CCcceeeeEEEEeecCCc---chHhhHHhhh-cccCCCCcccccccc
Q psy1616 1 MREVKIRKLCLNICVGES---GDRLTRAAKT-KAVDPAKPVAKKGKK 43 (237)
Q Consensus 1 M~~i~i~Kl~vni~vGe~---g~~l~~A~kv-~~itgqkPV~sk~~k 43 (237)
|+.|+|+|+||||||||+ ++.|..|.++ +.|+||+||.++.++
T Consensus 29 m~vP~i~KIvin~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkk 75 (182)
T 1mji_A 29 WEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKK 75 (182)
T ss_dssp GGSCCEEEEEEEEECTTTCCCHHHHHHHHHHHHHHHTSCCEEEECCS
T ss_pred ccCceeeEEEEEcCCchhhhChHHHHHHHHHHHHHhCCCcEEeeccc
Confidence 899999999999999999 5899999999 999999999998554
No 18
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=98.27 E-value=3.1e-07 Score=80.81 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=40.5
Q ss_pred CCcceeeeEEEEeecCCcch---HhhHHhhh-cccCCCCcccccccc
Q psy1616 1 MREVKIRKLCLNICVGESGD---RLTRAAKT-KAVDPAKPVAKKGKK 43 (237)
Q Consensus 1 M~~i~i~Kl~vni~vGe~g~---~l~~A~kv-~~itgqkPV~sk~~k 43 (237)
|+.|+|+|+||||||||+++ .|..|.++ +.|+||+||.++.++
T Consensus 41 m~vPki~KIvin~gvgea~~d~k~L~~A~~~L~~ITGQkPv~tkAKk 87 (220)
T 3bbo_H 41 LEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPVKTKAKT 87 (220)
T ss_dssp SSSCCEEEEECCCCCCCSSCCHHHHHHHHHHHHHHTCSCCCCCBCCS
T ss_pred ccCceEEEEEEEcccchhhhchHHHHHHHHHHHHHhCCCcEEeeccc
Confidence 89999999999999999998 89999999 999999999999554
Done!