RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1616
(237 letters)
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 165
Score = 122 bits (307), Expect = 1e-35
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 30/187 (16%)
Query: 48 NVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGERA 106
+ MRE +I K+ +++ +G G L A +L ++TGQ PV +KA+ T R
Sbjct: 2 HEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIRE----- 56
Query: 107 SSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSG 166
G + K + + + L + + +G
Sbjct: 57 -------------GDPIGAKVTLRDE-----MAEEFLQTALPL-----AELATSQFDDTG 93
Query: 167 NFGFGIQEHID-LGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDA 225
NF FG++EH + +YDPSIGIYGLD V L RPG+ VA R + + + +HRL DA
Sbjct: 94 NFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADA 153
Query: 226 MKWFQTK 232
+ + ++
Sbjct: 154 VAFIEST 160
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 179
Score = 68.4 bits (167), Expect = 5e-15
Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 29/163 (17%)
Query: 42 KKDKSKNVMREVKIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYT-RSK 97
K K++M+ KI K+ +N+ VG++ L A + L + GQ+PV ++A+ +
Sbjct: 18 SKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGF 77
Query: 98 GRRNPGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRR--KVTERELDHLNQKIH 155
R GM + K ++ E + V+
Sbjct: 78 RLR------------------QGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSK 119
Query: 156 KAQSLCLHHSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVL 197
K+ GN+ GI+E + I YD + G+D +V
Sbjct: 120 KSFD----GRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVT 158
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus
[TaxId: 274]}
Length = 180
Score = 64.6 bits (157), Expect = 2e-13
Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 45/170 (26%)
Query: 42 KKDKSKNVMREVKIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTRSKG 98
++ +NV ++ K+ +N +GE+ + L +AA+ L +TGQ+P ++A+ + S
Sbjct: 19 RRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNF 78
Query: 99 RRNPG-----------ERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTEREL 147
+ G +R F++ L+ +ALP R+
Sbjct: 79 KLRKGMPIGLRVTLRRDRMWIFLEKLLNVALP-----------------------RIRDF 115
Query: 148 DHLNQKIHKAQSLCLHHSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVV 196
LN GN+ G++E + I YD + G+D VV
Sbjct: 116 RGLNPNSFD-------GRGNYNLGLREQLIFPEITYDMVDALRGMDIAVV 158
Score = 36.1 bits (83), Expect = 0.001
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 1 MREVKIRKLCLNICVGESGDRLTRAAKTKAVDPAKPVAKKGKKDKSKNVMREVKIRK 57
++ K+ +N +GE+ + K + A +K ++K + K+RK
Sbjct: 27 WEVPRLEKVVINQGLGEAKEDARILEKAAQ-ELALITGQKPAVTRAKKSISNFKLRK 82
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 177
Score = 61.9 bits (150), Expect = 1e-12
Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 45/170 (26%)
Query: 42 KKDKSKNVMREVKIRKLCLNICVG---ESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKG 98
++ +VM +I K+ +N +G E + +AAK L +T Q+P+ +KA+ + S
Sbjct: 16 QQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQKPIITKAKKSISNF 75
Query: 99 RRNPG-----------ERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTEREL 147
+ G ER F++ L+ + LP + F N
Sbjct: 76 KLRQGMPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAFD-------------- 121
Query: 148 DHLNQKIHKAQSLCLHHSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVV 196
GN+ GI+E + I YD G+D +V
Sbjct: 122 ----------------GRGNYNLGIKEQLIFPEITYDMVDKTRGMDITIV 155
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli
[TaxId: 562]}
Length = 177
Score = 51.9 bits (124), Expect = 5e-09
Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 29/162 (17%)
Query: 42 KKDKSKNVMREVKIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTRSKG 98
+ +VM+ ++ K+ LN+ VGE+ L AA L ++GQ+P+ +KAR + +
Sbjct: 16 TEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGF 75
Query: 99 RRNPGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQ 158
+ G + K ++ E ER + +I +
Sbjct: 76 KIR-----------------QGYPIGCKVTLRGERMWE-----FFERLITIAVPRIRDFR 113
Query: 159 SLCLH---HSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVV 196
L GN+ G++E I I YD + GLD +
Sbjct: 114 GLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITIT 155
>d1rqwa_ b.25.1.1 (A:) Thaumatin {Ketemfe (Thaumatococcus daniellii)
[TaxId: 4621]}
Length = 207
Score = 28.0 bits (62), Expect = 0.74
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 185 SIGIYGLDFYVVLGRPGFNVAHRRRKTG 212
S+ YG D+ + GFNV T
Sbjct: 91 SLNQYGKDYIDISNIKGFNVPMDFSPTT 118
>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide
pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId:
2261]}
Length = 279
Score = 26.5 bits (58), Expect = 2.7
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 1 MREVKIRKLCLNICVGESGDRLTRAAKTKAVDPA-----KPVAKKGKKDKSKNVMR 51
+ E KI+++ + G + A KP+AK+GK K V R
Sbjct: 161 LDEEKIKEIVDVVDAFGVGGAIASAKPVDFALDIVEVEGKPIAKRGKLSGRKQVYR 216
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC
{Bacillus subtilis [TaxId: 1423]}
Length = 319
Score = 26.0 bits (56), Expect = 4.1
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 154 IHKAQSLCLHHSGNFGFGIQEHIDL 178
H +S + N FG +DL
Sbjct: 216 WHSTKSDQATLALNITFGQPAWLDL 240
>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional
uracil-DNA glycosylase SMUG1 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 245
Score = 25.2 bits (55), Expect = 7.1
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 2 REVKIRKLCLNICVGE-SGDRLTRAAKTKAVD----------PAKPVAKKGKKDKSKNVM 50
+ V++ + L I VG S R +A + +D P P A KG + + +
Sbjct: 176 QAVRVLGVKLVIGVGRFSEQRARKALMAEGIDVTVKGIMHPSPRNPQANKGWEGIVRGQL 235
Query: 51 REVKIRKL 58
E+ + L
Sbjct: 236 LELGVLSL 243
>d1stza2 d.110.2.3 (A:101-336) Heat-inducible transcription
repressor HrcA, C-terminal domain {Thermotoga maritima
[TaxId: 2336]}
Length = 236
Score = 25.3 bits (55), Expect = 7.4
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 60 LNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRR 100
++ + + L A +L +LT + + K R
Sbjct: 9 KSMPLADPEKVLFLAGNLLARLTEGYVLIERPNTRDLKILR 49
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA
probable tRNA-binding arm {Staphylococcus aureus [TaxId:
1280]}
Length = 65
Score = 23.1 bits (50), Expect = 9.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 137 QNRRKVTERELDHLNQKIHKAQSL 160
N+R +++LD QKI + + L
Sbjct: 36 HNKRDNLQQQLDANEQKIEEGKRL 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.408
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 868,532
Number of extensions: 38699
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 17
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)