RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16161
(387 letters)
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 159 bits (403), Expect = 3e-46
Identities = 74/229 (32%), Positives = 108/229 (47%), Gaps = 54/229 (23%)
Query: 154 PFGQQAETTLATNFFALVTVCHMLFPLLRPHARVVNVASQYGML-YKVPSQELKQTLLND 212
PF QAE T+ TNFF VC L PL++P RVVNV+S + K S EL+Q ++
Sbjct: 101 PFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSE 160
Query: 213 SLTEDQLVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATLSKDQTRPDI 272
++TE++LVG+M+ +V+ K+G Q+ GWP Y V+K+GV
Sbjct: 161 TITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGV-------------------- 200
Query: 273 IVNAVHPGYVNTDLTGHKGILTMTIHTLKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPG 332
LS I LS+ + I++NA PG
Sbjct: 201 --------------------------------TVLSRIHARKLSEQRKGDKILLNACCPG 228
Query: 333 YVNTDLTGHKGILTTEQGSVSSVKGALIPPDAKEPRGQFIWYDGSIVDW 381
+V TD+ G K + E+G+ + V AL+PPDA+ P GQF + + W
Sbjct: 229 WVRTDMAGPKATKSPEEGAETPVYLALLPPDAEGPHGQF-VSEKRVEQW 276
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 126 bits (319), Expect = 7e-34
Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 66/229 (28%)
Query: 158 QAETTLATNFFALVTVCHMLFPLLR--PHARVVNVASQYGMLYKVPSQELKQTLLN-DSL 214
AE L N+ + +V +L PLL+ R+VNV+S G L V ++ + L + D+L
Sbjct: 144 LAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDAL 203
Query: 215 TEDQLVGMMHDYVKLAKEGKDQEAGWPDDP--YTVSKVGVIKLSFIQHATLSKDQTRPDI 272
TE+++ +++ +K KE + GWP YT SK + + + + P
Sbjct: 204 TEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTRVLANKI------PKF 257
Query: 273 IVNAVHPGYVNTDLTGHKGILTMTIHTLKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPG 332
VN V P G
Sbjct: 258 QVNCVCP----------------------------------------------------G 265
Query: 333 YVNTDLTGHKGILTTEQGSVSSVKGALIPPDAKEPRGQFIWYDGSIVDW 381
V T++ G T E+G+ V+ AL P D P G F + + +
Sbjct: 266 LVKTEMNYGIGNYTAEEGAEHVVRIALFPDDG--PSGFF-YDCSELSAF 311
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 70.8 bits (174), Expect = 3e-14
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 314 TLSKDQTRPDIIVNAVHPGYVNTDLTGHKGILTTEQGSVSSVKGALIPPDAKEPRGQFIW 373
TL+ D +++V PG+V T+L G LT EQ + + + G+F
Sbjct: 185 TLAVDLKDDNVLVVNFCPGWVQTNLGGKNAALTVEQSTAELISSFNKLDN--SHNGRFFM 242
Query: 374 YDGSIVDW 381
+ ++
Sbjct: 243 RNLKPYEF 250
Score = 63.9 bits (156), Expect = 7e-12
Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 50/151 (33%)
Query: 157 QQAETTLATNFFALVTVCHMLFPLLR-------------PHARVVNVASQYGMLYKVPSQ 203
L N ++V + L PLL+ A V+ ++S G
Sbjct: 104 AVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG-------- 155
Query: 204 ELKQTLLNDSLTEDQLVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATL 263
S+T++ +P Y +SK + TL
Sbjct: 156 ---------SITDNTSGSA----------------QFPVLAYRMSKAAINMFG----RTL 186
Query: 264 SKDQTRPDIIVNAVHPGYVNTDLTGHKGILT 294
+ D +++V PG+V T+L G LT
Sbjct: 187 AVDLKDDNVLVVNFCPGWVQTNLGGKNAALT 217
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 67.8 bits (166), Expect = 4e-13
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 314 TLSKDQTRPDIIVNAVHPGYVNTDLTGHKGILTTEQGSVSSVKG--ALIPPDAKEPRGQF 371
+LS D I+ ++HPG+V TD+ G L S I ++ G F
Sbjct: 202 SLSVDLYPQRIMCVSLHPGWVKTDMGGSSAPLDVPT----STGQIVQTISKLGEKQNGGF 257
Query: 372 IWYDGSIVDW 381
+ YDG+ + W
Sbjct: 258 VNYDGTPLAW 267
Score = 55.8 bits (135), Expect = 4e-09
Identities = 29/148 (19%), Positives = 46/148 (31%), Gaps = 54/148 (36%)
Query: 160 ETTLATNFFALVTVCHMLFPLLR-------------PHARVVNVASQYGMLYKVPSQELK 206
TL TN + + PLL+ A ++N++S G
Sbjct: 128 LDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG----------- 176
Query: 207 QTLLNDSLTEDQLVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATLSKD 266
S+ + GM Y SK + + +LS D
Sbjct: 177 ------SIQGNTDGGMY--------------------AYRTSKSALNAAT----KSLSVD 206
Query: 267 QTRPDIIVNAVHPGYVNTDLTGHKGILT 294
I+ ++HPG+V TD+ G L
Sbjct: 207 LYPQRIMCVSLHPGWVKTDMGGSSAPLD 234
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 54.6 bits (132), Expect = 9e-09
Identities = 19/139 (13%), Positives = 34/139 (24%), Gaps = 18/139 (12%)
Query: 151 GNAPFGQQAETTLATNFFALVTVCHMLFPLLRP--HARVVNVASQYGMLYKVPSQELKQT 208
G P + ++ N+F + P L+ V ++S L
Sbjct: 71 GLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALA 130
Query: 209 LLNDSLTEDQLVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATLSKDQT 268
L K + + Y SK + +
Sbjct: 131 LEAGEE------------AKARAIVEHAGEQGGNLAYAGSKNALTVAVR----KRAAAWG 174
Query: 269 RPDIIVNAVHPGYVNTDLT 287
+ +N + PG T L
Sbjct: 175 EAGVRLNTIAPGATETPLL 193
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 46.3 bits (109), Expect = 3e-06
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKKFL---------QLDTNRILTRSMNARFLRK 48
+K +E + K +++ ++K KK L Q++ N+I R + F ++
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
Score = 33.2 bits (75), Expect = 0.075
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 1 IISKKEQEEEE----EEEKKKKKKK--KKKKKKFL-QLDTNRI 36
K +++ EE + E+ +K K + K F Q D + I
Sbjct: 112 WREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 45.4 bits (108), Expect = 1e-05
Identities = 13/131 (9%), Positives = 30/131 (22%), Gaps = 48/131 (36%)
Query: 160 ETTLATNFFALVTVCHMLFPLLRPHARVVNVASQYGMLYKVPSQELKQTLLNDSLTEDQL 219
+ + + H+ L+ + ++ +
Sbjct: 102 DLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL----------------------- 138
Query: 220 VGMMHDYVKLAKEGKDQEAGWPDD-PYTVSKVGVIKLSFIQHATLSKD--QTRPDIIVNA 276
G P Y ++K V +L +L+ A
Sbjct: 139 ------------------DGTPGMIGYGMAKGAVHQLC----QSLAGKNSGMPSGAAAIA 176
Query: 277 VHPGYVNTDLT 287
V P ++T +
Sbjct: 177 VLPVTLDTPMN 187
Score = 29.6 bits (67), Expect = 1.3
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 301 KVGVIKLSFIQHATLSKD--QTRPDIIVNAVHPGYVNTDLT 339
K V +L +L+ AV P ++T +
Sbjct: 151 KGAVHQLC----QSLAGKNSGMPSGAAAIAVLPVTLDTPMN 187
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 45.0 bits (107), Expect = 1e-05
Identities = 10/130 (7%), Positives = 24/130 (18%), Gaps = 46/130 (35%)
Query: 160 ETTLATNFFALVTVCHMLFPLLRPHARVVNVASQYGMLYKVPSQELKQTLLNDSLTEDQL 219
+ + N ++ H+ LL V + +
Sbjct: 113 KGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAAL----------------------- 149
Query: 220 VGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATLSKD--QTRPDIIVNAV 277
Y +K + L+ + +
Sbjct: 150 -----------------NRTSGMIAYGATKAATHHII----KDLASENGGLPAGSTSLGI 188
Query: 278 HPGYVNTDLT 287
P ++T
Sbjct: 189 LPVTLDTPTN 198
Score = 32.7 bits (75), Expect = 0.14
Identities = 4/41 (9%), Positives = 10/41 (24%), Gaps = 6/41 (14%)
Query: 301 KVGVIKLSFIQHATLSKD--QTRPDIIVNAVHPGYVNTDLT 339
K + L+ + + P ++T
Sbjct: 162 KAATHHII----KDLASENGGLPAGSTSLGILPVTLDTPTN 198
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 44.9 bits (107), Expect = 2e-05
Identities = 32/138 (23%), Positives = 47/138 (34%), Gaps = 43/138 (31%)
Query: 160 ETTLATNF---FALVTVCHMLFPLLRPHARVVNVASQYGMLYKVPSQELKQTLLNDSLTE 216
E+ + TN FAL ++L P L RVV V+S M + L
Sbjct: 109 ESQIGTNHLGHFALT---NLLLPRLT--DRVVTVSS---MAHWPGRINL----------- 149
Query: 217 DQLVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHAT-LSK--DQTRPDII 273
+ L Y Y+ SK L+ + + L + +
Sbjct: 150 EDLNWRSRRYSPWLA-------------YSQSK-----LANLLFTSELQRRLTAAGSPLR 191
Query: 274 VNAVHPGYVNTDLTGHKG 291
A HPGY +T+L G G
Sbjct: 192 ALAAHPGYSHTNLQGASG 209
Score = 36.4 bits (85), Expect = 0.009
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 323 DIIVNAVHPGYVNTDLTGHKG 343
+ A HPGY +T+L G G
Sbjct: 189 PLRALAAHPGYSHTNLQGASG 209
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 43.8 bits (104), Expect = 3e-05
Identities = 13/134 (9%), Positives = 34/134 (25%), Gaps = 48/134 (35%)
Query: 157 QQAETTLATNFFALVTVCHMLFPLLRPHARVVNVASQYGMLYKVPSQELKQTLLNDSLTE 216
+ A+ + + ++ + L+P + + M
Sbjct: 95 KNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM-------------------- 134
Query: 217 DQLVGMMHDYVKLAKEGKDQEAGWPDD-PYTVSKVGVIKLSFIQHATLSKD--QTRPDII 273
P Y ++K V L+ ++L+ +
Sbjct: 135 ---------------------GPTPSMIGYGMAKAAVHHLT----SSLAAKDSGLPDNSA 169
Query: 274 VNAVHPGYVNTDLT 287
V + P ++T +
Sbjct: 170 VLTIMPVTLDTPMN 183
Score = 28.4 bits (64), Expect = 3.4
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 301 KVGVIKLSFIQHATLSKD--QTRPDIIVNAVHPGYVNTDLT 339
K V L+ ++L+ + V + P ++T +
Sbjct: 147 KAAVHHLT----SSLAAKDSGLPDNSAVLTIMPVTLDTPMN 183
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 4e-05
Identities = 66/411 (16%), Positives = 116/411 (28%), Gaps = 162/411 (39%)
Query: 59 RFLIEGVNAGYVWAPLMHRLQNGEHFRVVVV----FELERL----VH----NMPGGNGAD 106
+FL GYV + L+ + G+ +V+ + FE L +H + N
Sbjct: 63 KFL------GYV-SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 107 ARQQEKG-----EGKHCPCIPLTTGGSEDSKHSTTSVILVGEHKKTSVKGNAP----FGQ 157
+ ++ + P + S + + +GNA FG
Sbjct: 116 LVKTKELIKNYITARIMAKRPFD--------KKSNSALF-----RAVGEGNAQLVAIFGG 162
Query: 158 Q--AETTLATNFFALVTVCHMLFPLLRPHARVVNVASQYGMLYKVPSQELKQTLLNDS-- 213
Q + F LR LY+ L L+ S
Sbjct: 163 QGNTDDY---------------FEELR-------------DLYQT-YHVLVGDLIKFSAE 193
Query: 214 -LTEDQLVGMMHDYVKLAKEGKDQEAGW-------PDDPY----TVSKVGVIKL-SFIQH 260
L+E L+ D K+ +G + W PD Y +S +I + +
Sbjct: 194 TLSE--LIRTTLDAEKVFTQGLNILE-WLENPSNTPDKDYLLSIPIS-CPLIGVIQLAHY 249
Query: 261 ATLSKDQTRPDIIVNAVHPGYVNTDL---TGH-KGILTMTI----------HTLKVGVIK 306
+K + PG + + L TGH +G++T I
Sbjct: 250 VVTAK--------LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 307 LSFI-----QHAT-----------------------------LSKDQTRPDI-IVNA--- 328
+ F A L+++Q + + N+
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 329 ----VHPGYVNTD----LTGHKGILTTEQGSVSSVKGALIPPDAKEPRGQF 371
V VN ++G L G +++ A P + R F
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSL---YGLNLTLRKAKAPSGLDQSRIPF 409
Score = 45.0 bits (106), Expect = 4e-05
Identities = 41/263 (15%), Positives = 73/263 (27%), Gaps = 78/263 (29%)
Query: 155 FGQQAETTLATNFFALVTVCHMLFPLLRPHARVVNVASQYG------ML--YKVPSQELK 206
F + FF + C+ +P ++ + + ML + ++++
Sbjct: 292 FFVSVRKAITVLFF-IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 207 QTL--LNDSLTEDQLVGMMHDYVKLAKEGKDQE--AGWPDDPYTVS----KVGVIKLSFI 258
+ N L + + L G +G P Y ++ K
Sbjct: 351 DYVNKTNSHLPAGK-----QVEISL-VNGAKNLVVSGPPQSLYGLNLTLRKA-------- 396
Query: 259 QHATLSKDQTR-------PDII-----VNA-VHPGY-------VNTDLTGHKGILTMTIH 298
A DQ+R V + H +N DL + ++
Sbjct: 397 -KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN--VSFNAK 453
Query: 299 TLKVGVIKLSFIQHAT--------LSKDQTR---PDIIVNAVH-PGYVNTDLTGHKGILT 346
+++ V + T LS + II V T H IL
Sbjct: 454 DIQIPV-------YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT-H--ILD 503
Query: 347 TEQGSVSSVKGALIPPDAKEPRG 369
G S + G L K+ G
Sbjct: 504 FGPGGASGL-GVLT-HRNKDGTG 524
Score = 35.4 bits (81), Expect = 0.032
Identities = 37/205 (18%), Positives = 63/205 (30%), Gaps = 53/205 (25%)
Query: 218 QLVGM-MHDYVK--LAKEGKDQEAGWPDDPYTVSKVG-----VIK---LSFIQHATLSKD 266
Q GM M Y A++ + A D + G ++ ++ H K
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWN-RA----DNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 267 QT-R---PDIIVNAVHPGY---------VNTDLT-----GHKGILTMTIHT---LKVGVI 305
+ R +I + G +N T KG+L+ T T L +
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL--- 1738
Query: 306 KLSFIQHATLSKDQTRPDIIVNAVHP-G-YVNTDLTGHKGILTTEQGSVSSVK--GALIP 361
+ L P A H G Y L +++ E V V G +
Sbjct: 1739 -MEKAAFEDLKSKGLIPADATFAGHSLGEY--AALASLADVMSIESL-VEVVFYRGMTM- 1793
Query: 362 PDAKEPRGQFIWYDGSIVDWNAVSP 386
PR + + ++ A++P
Sbjct: 1794 -QVAVPRDELGRSNYGMI---AINP 1814
Score = 34.3 bits (78), Expect = 0.085
Identities = 35/249 (14%), Positives = 70/249 (28%), Gaps = 97/249 (38%)
Query: 149 VKGNAP-----FGQQAETTLATNFFALV--------TVCHMLFPLLRPHARVVNVASQYG 195
V N FG + + N+ A++ +F + H+ + Y
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS------TSY- 1717
Query: 196 MLYKVPSQELKQTLLNDSLTEDQ----LVGMMHDYVKLAKEGKDQE----AG-----WPD 242
++ L T T Q L+ + L +G AG
Sbjct: 1718 -TFRSEKGLLSAT----QFT--QPALTLMEKA-AFEDLKSKGLIPADATFAGHSLGE--- 1766
Query: 243 DPYT--VSKVGVIKLS-----------FIQHATLSKDQTRPDIIVNAVHPGYVNTDLT-- 287
Y S V+ + +Q A + R + + A++PG V +
Sbjct: 1767 --YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 288 --------------------------------GH-KGI--LTMTIHTLKVGVIKLSFIQH 312
G + + +T ++ +K+ I + +Q
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQK 1884
Query: 313 ATLSKDQTR 321
+LS ++
Sbjct: 1885 -SLSLEEVE 1892
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 44.2 bits (105), Expect = 4e-05
Identities = 28/173 (16%), Positives = 45/173 (26%), Gaps = 36/173 (20%)
Query: 160 ETTLATNFFALVTVCHMLFPLLRPHARVVNVASQYGMLYKVPSQELKQTLLNDSLTEDQL 219
+F ++ H P L A ++ S G L
Sbjct: 122 ADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAG-----------------------L 158
Query: 220 VGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHP 279
+ +G Y+ +K V + L+ I N +HP
Sbjct: 159 IAAAQPPGAGGPQGPGGAG------YSYAKQLVDSYT----LQLAAQLAPQSIRANVIHP 208
Query: 280 GYVNTDLTGHKGILTMTIHTLKVGVIK---LSFIQHATLSKDQTRPDIIVNAV 329
VNTD+ + L+ L+F + I NAV
Sbjct: 209 TNVNTDMLNSAPMYRQFRPDLEAPSRADALLAFPAMQAMPTPYVEASDISNAV 261
Score = 36.1 bits (84), Expect = 0.015
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 7/49 (14%)
Query: 324 IIVNAVHPGYVNTDLTGHKGILTTEQGSVSSVKGALIPPDAKEPRGQFI 372
I N +HP VNTD + + L P + F
Sbjct: 201 IRANVIHPTNVNTD-------MLNSAPMYRQFRPDLEAPSRADALLAFP 242
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 43.3 bits (103), Expect = 5e-05
Identities = 25/145 (17%), Positives = 38/145 (26%), Gaps = 51/145 (35%)
Query: 150 KGNAPFGQQAE----TTLATNFFALVTVCHMLFPLLR--PHARVVNVASQYGMLYKVPSQ 203
P Q + + N A + L PLL+ A + +S G
Sbjct: 106 GPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVG-------- 157
Query: 204 ELKQTLLNDSLTEDQLVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATL 263
G A W Y VSK L TL
Sbjct: 158 ---------------RKGR---------------ANWG--AYGVSKFATEGLM----QTL 181
Query: 264 SKDQTRPDII-VNAVHPGYVNTDLT 287
+ + + N+++PG T +
Sbjct: 182 ADELEGVTAVRANSINPGATRTGMR 206
Score = 28.6 bits (65), Expect = 3.2
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 326 VNAVHPGYVNTDLT 339
N+++PG T +
Sbjct: 193 ANSINPGATRTGMR 206
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 43.4 bits (103), Expect = 5e-05
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
PYT +K + L+ + + D DI + G TD+T
Sbjct: 185 PYTATKHAITGLT----KSTALDGRMHDIACGQIDIGNAATDMT 224
Score = 35.3 bits (82), Expect = 0.021
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K + L+ + + D DI + G TD+T
Sbjct: 190 KHAITGLT----KSTALDGRMHDIACGQIDIGNAATDMT 224
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 43.4 bits (103), Expect = 6e-05
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 289
PYT +K + L+ + S D DI + G +T +
Sbjct: 176 PYTATKHAITGLT----KSTSLDGRVHDIACGQIDIGNADTPMAQK 217
Score = 35.7 bits (83), Expect = 0.020
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 12/70 (17%)
Query: 273 IVNAVHPGYVNTDLTGHKGILTMTIHTL-KVGVIKLSFIQHATLSKDQTRPDIIVNAVHP 331
I+N N ++ +T K + L+ + S D DI +
Sbjct: 159 IIN-------NGSISATSPRPYSAPYTATKHAITGLT----KSTSLDGRVHDIACGQIDI 207
Query: 332 GYVNTDLTGH 341
G +T +
Sbjct: 208 GNADTPMAQK 217
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 43.4 bits (103), Expect = 6e-05
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK G++ + + A L+ + + +NA+ PG+VNT +
Sbjct: 152 VYCASKHGIVGFT--RSAALAANLMNSGVRLNAICPGFVNTAIL 193
Score = 36.8 bits (86), Expect = 0.006
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K G++ + + A L+ + + +NA+ PG+VNT +
Sbjct: 157 KHGIVGFT--RSAALAANLMNSGVRLNAICPGFVNTAIL 193
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 43.0 bits (102), Expect = 7e-05
Identities = 25/171 (14%), Positives = 52/171 (30%), Gaps = 50/171 (29%)
Query: 160 ETTLATNFFALVTVCHMLFPLLR-PHARVVNVASQYGMLYKVPSQELKQTLLNDSLTEDQ 218
+ NFF++V++ + P L+ + VV V+S
Sbjct: 104 KKLYDINFFSIVSLVGIALPELKKTNGNVVFVSS-------------------------- 137
Query: 219 LVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVH 278
M+ + W Y SK + + TL+ ++ + AV
Sbjct: 138 DACNMYF------------SSWGA--YGSSKAALNHFA----MTLANEE--RQVKAIAVA 177
Query: 279 PGYVNTDLTGHKGILTMTIHTLKVGVIKLSFIQHATLSKDQTRPDIIVNAV 329
PG V+TD+ + + + + +L + + +
Sbjct: 178 PGIVDTDMQVN---IRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVY 225
Score = 34.2 bits (79), Expect = 0.047
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 341
K + + TL+ ++ + AV PG V+TD+ +
Sbjct: 154 KAALNHFA----MTLANEE--RQVKAIAVAPGIVDTDMQVN 188
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 42.9 bits (102), Expect = 7e-05
Identities = 13/132 (9%), Positives = 33/132 (25%), Gaps = 47/132 (35%)
Query: 160 ETTLATNFFALVTVCHMLFPLLRPHA-RVVNVASQYGMLYKVPSQELKQTLLNDSLTEDQ 218
+ +N + + V L+ + NV S +
Sbjct: 102 RRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV--------------------- 140
Query: 219 LVGMMHDYVKLAKEGKDQEAGWPDD-PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAV 277
G ++ Y SK G+ +L + + + +
Sbjct: 141 --------------------GKANESLYCASKWGMRGFL----ESLRAELKDSPLRLVNL 176
Query: 278 HPGYVNTDLTGH 289
+P + ++ +
Sbjct: 177 YPSGIRSEFWDN 188
Score = 32.5 bits (75), Expect = 0.18
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 21/84 (25%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH------KGILTTE------ 348
K G+ +L + + + ++P + ++ + G +T E
Sbjct: 152 KWGMRGFL----ESLRAELKDSPLRLVNLYPSGIRSEFWDNTDHVDPSGFMTPEDAAAYM 207
Query: 349 -----QGSVSSVKGALIPPDAKEP 367
S V I +
Sbjct: 208 LDALEARSSCHVTDLFIGRNEGHH 231
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 42.7 bits (101), Expect = 9e-05
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y V+K GV+ L+ TL+++ I V+ + P V T L
Sbjct: 180 TYGVAKYGVVGLA----ETLAREVKPNGIGVSVLCPMVVETKLV 219
Score = 34.3 bits (79), Expect = 0.053
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 278 HPGY-VNTD-LTGHKGILTMTI-HTLKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYV 334
G+ T G + K GV+ L+ TL+++ I V+ + P V
Sbjct: 159 TGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLA----ETLAREVKPNGIGVSVLCPMVV 214
Query: 335 NTDLT 339
T L
Sbjct: 215 ETKLV 219
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 42.4 bits (100), Expect = 1e-04
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGHKGILTMTIHTLKVG 303
Y +K V LS +L + +I V+ + PG V + + I +
Sbjct: 164 IYNTTKFAVRGLS----ESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKP 219
Query: 304 VIKLSFIQHATLSKDQTRPD----IIVNAV 329
V K + + A + + PD ++ A+
Sbjct: 220 VDKTAVERLAGVHEFGMEPDVIGARVIEAM 249
Score = 33.9 bits (78), Expect = 0.077
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 282 VNTD-LTGHKGILTMTI-HTLKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
VNT + + I +T K V LS +L + +I V+ + PG V +
Sbjct: 148 VNTASMAAFLAAGSPGIYNTTKFAVRGLS----ESLHYSLLKYEIGVSVLCPGLVKS--- 200
Query: 340 GHKGILTTEQGSVSSVKGALIPPDAKE 366
I ++ ++KG + P D
Sbjct: 201 ---YIYASDDIRPDALKGEVKPVDKTA 224
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 41.9 bits (99), Expect = 2e-04
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGHKGILTMTIHTLKVGV 304
Y SK GV L +L+ + R +I VN+V+PG VNT++ ++ +L M + L+
Sbjct: 208 YAASKHGVQGLM----LSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPT 263
Query: 305 ---IKLSFIQHATLSKDQTRPDIIVNAV 329
F Q L P+ + NAV
Sbjct: 264 REDAAELFSQLTLLPIPWVEPEDVSNAV 291
Score = 36.1 bits (84), Expect = 0.015
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN+V+PG VNT++
Sbjct: 231 IRVNSVNPGAVNTEMA 246
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 41.3 bits (98), Expect = 3e-04
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK GV + +L+ + I NAV P Y+ T LT
Sbjct: 164 AYNASKAGVHQYI----RSLAAEWAPHGIRANAVAPTYIETTLT 203
Score = 34.4 bits (80), Expect = 0.039
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K GV + +L+ + I NAV P Y+ T LT
Sbjct: 169 KAGVHQYI----RSLAAEWAPHGIRANAVAPTYIETTLT 203
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 41.3 bits (98), Expect = 3e-04
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK G++ L+ +L+ D I VNAV PG + T+
Sbjct: 148 AYNASKGGLVNLT----RSLALDLAPLRIRVNAVAPGAIATEAV 187
Score = 34.4 bits (80), Expect = 0.041
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K G++ L+ +L+ D I VNAV PG + T+
Sbjct: 153 KGGLVNLT----RSLALDLAPLRIRVNAVAPGAIATEAV 187
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 41.1 bits (97), Expect = 3e-04
Identities = 23/133 (17%), Positives = 31/133 (23%), Gaps = 49/133 (36%)
Query: 160 ETTLATNFFALVTVCHMLFPLL--RPHARVVNVASQYGMLYKVPSQELKQTLLNDSLTED 217
E T N A P + H +V VAS G + VP
Sbjct: 133 EKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVS-VPFLL------------- 178
Query: 218 QLVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATLS---KDQTRPDIIV 274
Y SK + H TL+ +
Sbjct: 179 --------------------------AYCSSKFAAVGF----HKTLTDELAALQITGVKT 208
Query: 275 NAVHPGYVNTDLT 287
+ P +VNT
Sbjct: 209 TCLCPNFVNTGFI 221
Score = 29.5 bits (67), Expect = 1.7
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 317 KDQTRPDIIVNAVHPGYVNTDLT 339
+ + P +VNT
Sbjct: 199 AALQITGVKTTCLCPNFVNTGFI 221
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 41.0 bits (97), Expect = 3e-04
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTG 288
Y+ SK + L+ L++D I VN VHPG +TD+
Sbjct: 180 YSASKAALAGLT----KGLARDLGPRGITVNIVHPGSTDTDMNP 219
Score = 36.0 bits (84), Expect = 0.012
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTG 340
K + L+ L++D I VN VHPG +TD+
Sbjct: 184 KAALAGLT----KGLARDLGPRGITVNIVHPGSTDTDMNP 219
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 41.1 bits (97), Expect = 3e-04
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
PY V K KL+ + + R + ++ PG V T+L
Sbjct: 160 PYGVGKAACDKLAA----DCAHELRRHGVSCVSLWPGIVQTELL 199
Score = 36.1 bits (84), Expect = 0.013
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGHKGILTTEQGSVSSVKGALI 360
K KL+ + + R + ++ PG V T+L K + E+ V
Sbjct: 165 KAACDKLAA----DCAHELRRHGVSCVSLWPGIVQTELL--KEHMAKEEVLQDPVLKQFK 218
Query: 361 PP 362
Sbjct: 219 SA 220
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 41.0 bits (97), Expect = 3e-04
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGHKGILTMTIHTLKVGV 304
Y SK GVI L+ + D I VNAV PG + T +T + + L+
Sbjct: 171 YVSSKWGVIGLT----KCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPT 226
Query: 305 IK---LSFIQHATLSKDQTRPDIIVNAV 329
+K F +P+ + AV
Sbjct: 227 LKDVESVFASLHLQYAPFLKPEEVTRAV 254
Score = 36.3 bits (85), Expect = 0.010
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VNAV PG + T +T
Sbjct: 194 ITVNAVAPGNIETPMT 209
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 40.6 bits (96), Expect = 4e-04
Identities = 23/142 (16%), Positives = 36/142 (25%), Gaps = 51/142 (35%)
Query: 152 NAPFGQQAE----TTLATNFFALVTVCHMLFPLLR--PHARVVNVASQYGMLYKVPSQEL 205
P +Q + N A + L PLL +V +S G
Sbjct: 106 VCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVG---------- 155
Query: 206 KQTLLNDSLTEDQLVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATLSK 265
G A W Y SK + L+
Sbjct: 156 -------------RQGR---------------ANWG--AYAASKFATEGMM----QVLAD 181
Query: 266 DQTRPDIIVNAVHPGYVNTDLT 287
+ + + VN ++PG T +
Sbjct: 182 E-YQQRLRVNCINPGGTRTAMR 202
Score = 28.6 bits (65), Expect = 3.4
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 326 VNAVHPGYVNTDLT 339
VN ++PG T +
Sbjct: 189 VNCINPGGTRTAMR 202
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 40.3 bits (95), Expect = 5e-04
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K GV+ L + I VN++HP V T +
Sbjct: 174 GYVAAKHGVVGLM----RVYANLLAGQMIRVNSIHPSGVETPMI 213
Score = 35.6 bits (83), Expect = 0.019
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN++HP V T +
Sbjct: 198 IRVNSIHPSGVETPMI 213
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 40.2 bits (95), Expect = 6e-04
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 238 AGWPDDPYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK V +L+ L+ + + VNA+ PGYV T++T
Sbjct: 152 RPQFASSYMASKGAVHQLT----RALAAEWAGRGVRVNALAPGYVATEMT 197
Score = 32.1 bits (74), Expect = 0.23
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 324 IIVNAVHPGYVNTDLT 339
+ VNA+ PGYV T++T
Sbjct: 182 VRVNALAPGYVATEMT 197
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 40.3 bits (95), Expect = 7e-04
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y+ SK + + ++ D I VN V PG + TD+
Sbjct: 178 YSGSKGAIETFA----RCMAIDMADKKITVNVVAPGGIKTDMY 216
Score = 34.9 bits (81), Expect = 0.029
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K + + ++ D I VN V PG + TD+
Sbjct: 182 KGAIETFA----RCMAIDMADKKITVNVVAPGGIKTDMY 216
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 39.8 bits (94), Expect = 7e-04
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
YT SK V++L+ +++ D I NAV PG + T +T
Sbjct: 154 AYTTSKGAVLQLT----KSVAVDYAGSGIRCNAVCPGMIETPMT 193
Score = 34.0 bits (79), Expect = 0.064
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 324 IIVNAVHPGYVNTDLT 339
I NAV PG + T +T
Sbjct: 178 IRCNAVCPGMIETPMT 193
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 39.9 bits (94), Expect = 8e-04
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK V + D + VN + PG V TD+
Sbjct: 170 YAGSKAAVEGFC----RAFAVDCGAKGVTVNCIAPGGVKTDMF 208
Score = 34.5 bits (80), Expect = 0.036
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K V + D + VN + PG V TD+
Sbjct: 174 KAAVEGFC----RAFAVDCGAKGVTVNCIAPGGVKTDMF 208
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 39.6 bits (93), Expect = 8e-04
Identities = 18/135 (13%), Positives = 35/135 (25%), Gaps = 50/135 (37%)
Query: 157 QQAETTLATNFFALVTVCHMLFPLLR----PHARVVNVASQYGMLYKVPSQELKQTLLND 212
+ A N +++ + + VVN++S
Sbjct: 117 AEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS-------------------- 156
Query: 213 SLTEDQLVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATLSKDQTRPDI 272
L + GW Y K L L+ ++ P +
Sbjct: 157 ------LCALQPY------------KGWG--LYCAGKAARDMLY----QVLAAEE--PSV 190
Query: 273 IVNAVHPGYVNTDLT 287
V + PG ++ D+
Sbjct: 191 RVLSYAPGPLDNDMQ 205
Score = 32.7 bits (75), Expect = 0.15
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 14/73 (19%)
Query: 322 PDIIVNAVHPGYVNTDLTGHKGILTTEQGSVSSVK-----GALIPPDAKEPRGQFIWY-- 374
P + V + PG ++ D+ + + S ++ GAL+ + +
Sbjct: 188 PSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCG--TSAQKLLGLLQ 245
Query: 375 -----DGSIVDWN 382
G+ VD+
Sbjct: 246 KDTFQSGAHVDFY 258
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 39.8 bits (94), Expect = 8e-04
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y+ SK G+ L+ TL+ + I VN++HP V T +
Sbjct: 177 HYSASKHGLTALT----NTLAIELGEYGIRVNSIHPYSVETPMI 216
Score = 35.2 bits (82), Expect = 0.023
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN++HP V T +
Sbjct: 201 IRVNSIHPYSVETPMI 216
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 39.5 bits (93), Expect = 0.001
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 12/53 (22%)
Query: 239 GWPDD-PYTVSKVGVIKLS---FIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
+ Y SK VI L+ + +A P + NAV P ++T L
Sbjct: 139 ITKNASAYVTSKHAVIGLTKSIALDYA--------PLLRCNAVCPATIDTPLV 183
Score = 34.1 bits (79), Expect = 0.055
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 322 PDIIVNAVHPGYVNTDLT 339
P + NAV P ++T L
Sbjct: 166 PLLRCNAVCPATIDTPLV 183
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 39.5 bits (93), Expect = 0.001
Identities = 26/140 (18%), Positives = 37/140 (26%), Gaps = 22/140 (15%)
Query: 151 GNAPFGQQAETTLATNFFALVTVCHMLFPLLRP--HARVVNVASQYGML-YKVPSQELKQ 207
G + +A N+F + + L L V V S ++
Sbjct: 71 GVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEA 130
Query: 208 TLLNDSLTEDQLVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATLSKDQ 267
L D +L G Y SK V L+ D
Sbjct: 131 MLAGDEARAIELAEQQ---------------GQTHLAYAGSKYAVTCLA----RRNVVDW 171
Query: 268 TRPDIIVNAVHPGYVNTDLT 287
+ +N V PG V T L
Sbjct: 172 AGRGVRLNVVAPGAVETPLL 191
Score = 34.5 bits (80), Expect = 0.042
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 326 VNAVHPGYVNTDLTGHKGILTTEQGSVSSVKGALIP 361
+N V PG V T L + S + + P
Sbjct: 178 LNVVAPGAVETPLLQA---SKADPRYGESTRRFVAP 210
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 39.9 bits (94), Expect = 0.001
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGHKGILTMTIHTLKVG 303
Y SK G+ L T++ + +I VN V P V T + ++ M L+
Sbjct: 190 NYIASKHGLHGLM----RTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENP 245
Query: 304 VI---KLSFIQHATLSKDQTRPDIIVNAV 329
+ +++ Q L P I NA+
Sbjct: 246 TVEDFQVASRQMHVLPIPYVEPADISNAI 274
Score = 34.9 bits (81), Expect = 0.036
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN V P V T +
Sbjct: 214 IRVNIVCPSSVATPML 229
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 39.5 bits (93), Expect = 0.001
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK +I L+ T + D +I VNA+ PGY+
Sbjct: 156 AYGTSKGAIIALT----ETAALDLAPYNIRVNAISPGYMGPGFM 195
Score = 35.6 bits (83), Expect = 0.019
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGHKGILTTEQGSVSSVKGALI 360
K +I L+ T + D +I VNA+ PGY+ Q V S +
Sbjct: 161 KGAIIALT----ETAALDLAPYNIRVNAISPGYMGPGFM--WERQVELQAKVGSQYFSTD 214
Query: 361 PPDAKE 366
P +
Sbjct: 215 PKVVAQ 220
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 39.5 bits (93), Expect = 0.001
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
YT SK V L+ + + + I VN+VHPG VNT +
Sbjct: 173 HYTASKHAVTGLA----RAFAAELGKHSIRVNSVHPGPVNTPMG 212
Score = 35.2 bits (82), Expect = 0.027
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN+VHPG VNT +
Sbjct: 197 IRVNSVHPGPVNTPMG 212
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 39.1 bits (92), Expect = 0.001
Identities = 19/133 (14%), Positives = 29/133 (21%), Gaps = 48/133 (36%)
Query: 158 QAETTLATNFFALVTVC-HMLFPLLRPHARVVNVASQYGMLYKVPSQELKQTLLNDSLTE 216
E LA + V H F + AR V +
Sbjct: 89 LVEEMLAAHLLTAAFVLKHARF---QKGARAVFFGAYPR--------------------- 124
Query: 217 DQLVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNA 276
V + G+ Y +K + K+ R + +
Sbjct: 125 --YVQV---------------PGFA--AYAAAKGALEAYL----EAARKELLREGVHLVL 161
Query: 277 VHPGYVNTDLTGH 289
V V T L
Sbjct: 162 VRLPAVATGLWAP 174
Score = 29.4 bits (67), Expect = 1.4
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 324 IIVNAVHPGYVNTDLTGH 341
+ + V V T L
Sbjct: 157 VHLVLVRLPAVATGLWAP 174
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 39.5 bits (93), Expect = 0.001
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y V+K V L + + + VN++ PG + TDL
Sbjct: 163 AYGVTKSAVDHLM----QLAADELGASWVRVNSIRPGLIRTDLV 202
Score = 32.9 bits (76), Expect = 0.15
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 326 VNAVHPGYVNTDLT 339
VN++ PG + TDL
Sbjct: 189 VNSIRPGLIRTDLV 202
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 39.4 bits (93), Expect = 0.001
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 239 GWPDDP-YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
G P Y SK V +S + A L D+ VN VHPGY+ T L
Sbjct: 148 GDPSLGAYNASKGAVRIMS--KSAALDCALKDYDVRVNTVHPGYIKTPLV 195
Score = 33.6 bits (78), Expect = 0.082
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 326 VNAVHPGYVNTDLT 339
VN VHPGY+ T L
Sbjct: 182 VNTVHPGYIKTPLV 195
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 39.4 bits (93), Expect = 0.001
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK L ++ D +I VN + PG + TD
Sbjct: 159 YASSKAAASHLV----RNMAFDLGEKNIRVNGIAPGAILTDAL 197
Score = 33.6 bits (78), Expect = 0.076
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K L ++ D +I VN + PG + TD
Sbjct: 163 KAAASHLV----RNMAFDLGEKNIRVNGIAPGAILTDAL 197
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 39.4 bits (93), Expect = 0.001
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K VI S Q + D + I VNA+ PG V+ +
Sbjct: 154 IYCATKAAVI--SLTQ--SAGLDLIKHRINVNAIAPGVVDGEHW 193
Score = 33.3 bits (77), Expect = 0.097
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K VI S Q + D + I VNA+ PG V+ +
Sbjct: 159 KAAVI--SLTQ--SAGLDLIKHRINVNAIAPGVVDGEHW 193
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 39.1 bits (92), Expect = 0.001
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
YT+SK + +++ +L+ D + I VN V PG V+TDL
Sbjct: 139 AYTLSKGAIAQMT----KSLALDLAKYQIRVNTVCPGTVDTDLY 178
Score = 33.7 bits (78), Expect = 0.067
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN V PG V+TDL
Sbjct: 163 IRVNTVCPGTVDTDLY 178
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 39.1 bits (92), Expect = 0.001
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGHKGILTMTIHTLKVGV 304
Y+ +K V Q +++ VNA PG V T + I+ +G
Sbjct: 154 YSTTKFAVR--GLTQ--AAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGE 209
Query: 305 IKLSFIQHATLSKDQTRPDIIVNAV 329
+ L + P+ + V
Sbjct: 210 NFKEYSSSIALGRPSV-PEDVAGLV 233
Score = 33.7 bits (78), Expect = 0.068
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K V Q +++ VNA PG V T +
Sbjct: 158 KFAVR--GLTQ--AAAQELAPKGHTVNAYAPGIVGTGMW 192
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 39.4 bits (93), Expect = 0.001
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 289
Y SK V+ L+ ++ + I VN+V PGY+ T+L
Sbjct: 183 HYCTSKAAVVHLT----KAMAVELAPHQIRVNSVSPGYIRTELVEP 224
Score = 31.7 bits (73), Expect = 0.36
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 324 IIVNAVHPGYVNTDLTGH 341
I VN+V PGY+ T+L
Sbjct: 207 IRVNSVSPGYIRTELVEP 224
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 39.1 bits (92), Expect = 0.001
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 289
Y +SK G L T+ + ++ + V PG V T + G
Sbjct: 158 YCMSKFGQRGLV----ETMRLYARKCNVRITDVQPGAVYTPMWGK 198
Score = 35.3 bits (82), Expect = 0.019
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 341
K G L T+ + ++ + V PG V T + G
Sbjct: 162 KFGQRGLV----ETMRLYARKCNVRITDVQPGAVYTPMWGK 198
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 39.0 bits (92), Expect = 0.001
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
YT +K V L+ + + + I VN++HPG V T +T
Sbjct: 152 GYTATKFAVRGLT----KSTALELGPSGIRVNSIHPGLVKTPMT 191
Score = 33.3 bits (77), Expect = 0.099
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 326 VNAVHPGYVNTDLT 339
VN++HPG V T +T
Sbjct: 178 VNSIHPGLVKTPMT 191
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 39.0 bits (92), Expect = 0.001
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK GV LS + + I VN+VHPG T +T
Sbjct: 150 SYGASKWGVRGLS----KLAAVELGTDRIRVNSVHPGMTYTPMT 189
Score = 34.0 bits (79), Expect = 0.062
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN+VHPG T +T
Sbjct: 174 IRVNSVHPGMTYTPMT 189
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 39.0 bits (92), Expect = 0.001
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
PYTV+K G+I L+ +++ I AV PG V T++
Sbjct: 156 PYTVAKHGLIGLT----RSIAAHYGDQGIRAVAVLPGTVKTNIG 195
Score = 33.2 bits (77), Expect = 0.11
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 324 IIVNAVHPGYVNTDLTGHKGILTTEQGSVSSVKGALIP 361
I AV PG V T++ G + + ++ +
Sbjct: 180 IRAVAVLPGTVKTNIG--LGSSKPSELGMRTLTKLMSL 215
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 39.1 bits (92), Expect = 0.001
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K GV ++ LSK+ DI VNAV PG TDL
Sbjct: 174 IYAAAKAGVEAMT----HVLSKELRGRDITVNAVAPGPTATDLF 213
Score = 34.1 bits (79), Expect = 0.060
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K GV ++ LSK+ DI VNAV PG TDL
Sbjct: 179 KAGVEAMT----HVLSKELRGRDITVNAVAPGPTATDLF 213
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 39.1 bits (92), Expect = 0.001
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y ++K + L+ + D I +NAV P VNT +
Sbjct: 166 YCLTKAALASLT----QCMGMDHAPQGIRINAVCPNEVNTPML 204
Score = 32.9 bits (76), Expect = 0.12
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K + L+ + D I +NAV P VNT +
Sbjct: 170 KAALASLT----QCMGMDHAPQGIRINAVCPNEVNTPML 204
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 39.1 bits (92), Expect = 0.001
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTG 288
Y+++K + ++ TL+K I VNA+ PG+V TD+
Sbjct: 160 AYSMTKGAINTMT----FTLAKQLGARGITVNAILPGFVKTDMNA 200
Score = 35.2 bits (82), Expect = 0.024
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 324 IIVNAVHPGYVNTDLTG 340
I VNA+ PG+V TD+
Sbjct: 184 ITVNAILPGFVKTDMNA 200
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 39.1 bits (92), Expect = 0.001
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y ++K ++ +S TL+ + I VN+V PGY+
Sbjct: 159 AYKMAKSALLAMS----QTLATELGEKGIRVNSVLPGYIWGGTL 198
Score = 33.3 bits (77), Expect = 0.11
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K ++ +S TL+ + I VN+V PGY+
Sbjct: 164 KSALLAMS----QTLATELGEKGIRVNSVLPGYIWGGTL 198
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 39.1 bits (92), Expect = 0.001
Identities = 22/140 (15%), Positives = 31/140 (22%), Gaps = 48/140 (34%)
Query: 153 APFGQQAE----TTLATNFFALVTVCHMLFPLLRPHARVVNVASQYGMLYKVPSQELKQT 208
P G+ E T N ++ PLL + VV S G
Sbjct: 117 LPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAG------------- 163
Query: 209 LLNDSLTEDQLVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATLSKDQT 268
G + Y SK + + D
Sbjct: 164 ----------STGT---------------PAFS--VYAASKAALRSFA----RNWILDLK 192
Query: 269 RPDIIVNAVHPGYVNTDLTG 288
I +N + PG T
Sbjct: 193 DRGIRINTLSPGPTETTGLV 212
Score = 32.1 bits (74), Expect = 0.21
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 324 IIVNAVHPGYVNTDLTGHKGILTTEQGS-VSSVKGALIP 361
I +N + PG T Q + + A +P
Sbjct: 196 IRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVP 234
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 39.0 bits (92), Expect = 0.001
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y ++KVG+ L+ LS++ +I +NA+ PG ++T+
Sbjct: 158 YGLAKVGINGLT----QQLSRELGGRNIRINAIAPGPIDTEAN 196
Score = 34.0 bits (79), Expect = 0.059
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
KVG+ L+ LS++ +I +NA+ PG ++T+
Sbjct: 162 KVGINGLT----QQLSRELGGRNIRINAIAPGPIDTEAN 196
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 39.1 bits (92), Expect = 0.002
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y+ SK V SKD I VNAV PG TD+
Sbjct: 167 YSGSKGAVDSFV----RIFSKDCGDKKITVNAVAPGGTVTDMF 205
Score = 33.7 bits (78), Expect = 0.072
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VNAV PG TD+
Sbjct: 190 ITVNAVAPGGTVTDMF 205
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 39.1 bits (92), Expect = 0.002
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K GV+ L+ + + R I +NA+ PG + T +
Sbjct: 164 GYAAAKHGVVGLT----RNSAVEYGRYGIRINAIAPGAIWTPMV 203
Score = 32.5 bits (75), Expect = 0.18
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 326 VNAVHPGYVNTDLT 339
+NA+ PG + T +
Sbjct: 190 INAIAPGAIWTPMV 203
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 38.7 bits (91), Expect = 0.002
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +SK G+I+LS + + I N + P +V+T +
Sbjct: 174 AYGMSKAGIIQLS----RITAAELRSSGIRSNTLLPAFVDTPMQ 213
Score = 33.3 bits (77), Expect = 0.11
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 326 VNAVHPGYVNTDLT 339
N + P +V+T +
Sbjct: 200 SNTLLPAFVDTPMQ 213
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 38.7 bits (91), Expect = 0.002
Identities = 20/130 (15%), Positives = 36/130 (27%), Gaps = 46/130 (35%)
Query: 160 ETTLATNFFALVTVCHMLFPLLRP--HARVVNVASQYGMLYKVPSQELKQTLLNDSLTED 217
+ A V + L P +R +++ AS P
Sbjct: 110 QFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICA---VQPL--------------- 151
Query: 218 QLVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAV 277
Y V+K ++ S TL+ + + +I VN +
Sbjct: 152 --WYEPI--------------------YNVTKAALMMFS----KTLATEVIKDNIRVNCI 185
Query: 278 HPGYVNTDLT 287
+PG + T
Sbjct: 186 NPGLILTPDW 195
Score = 32.1 bits (74), Expect = 0.22
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 299 TLKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K ++ S TL+ + + +I VN ++PG + T
Sbjct: 159 VTKAALMMFS----KTLATEVIKDNIRVNCINPGLILTPDW 195
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 38.7 bits (91), Expect = 0.002
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K GV+ L + + I VN+VHP +V T +
Sbjct: 177 HYVAAKHGVVGLM----RAFGVELGQHMIRVNSVHPTHVKTPML 216
Score = 34.5 bits (80), Expect = 0.040
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 326 VNAVHPGYVNTDLT 339
VN+VHP +V T +
Sbjct: 203 VNSVHPTHVKTPML 216
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 38.6 bits (91), Expect = 0.002
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
YT +K ++ L+ L+K+ R I VN + PGYV T+ T
Sbjct: 143 AYTTAKTALLGLT----RALAKEWARLGIRVNLLCPGYVETEFT 182
Score = 32.1 bits (74), Expect = 0.20
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN + PGYV T+ T
Sbjct: 167 IRVNLLCPGYVETEFT 182
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 38.7 bits (91), Expect = 0.002
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 19/52 (36%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTR-------PDIIVNAVHPGYVNTDLTG 288
YT +K V+ L R P + VN V PG +NTDL G
Sbjct: 154 LYTATKHAVVGL------------VRQMAFELAPHVRVNGVAPGGMNTDLRG 193
Score = 35.7 bits (83), Expect = 0.016
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 322 PDIIVNAVHPGYVNTDLTGHKGILTTEQG 350
P + VN V PG +NTDL G + +EQ
Sbjct: 175 PHVRVNGVAPGGMNTDLRGPSSLGLSEQS 203
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 38.7 bits (91), Expect = 0.002
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 11/47 (23%)
Query: 244 PYTVSKVGVIKLS---FIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK ++ L+ I +A P I NAV PG + T +
Sbjct: 152 AYVTSKHALLGLTRSVAIDYA--------PKIRCNAVCPGTIMTPMV 190
Score = 33.3 bits (77), Expect = 0.088
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 322 PDIIVNAVHPGYVNTDLT 339
P I NAV PG + T +
Sbjct: 173 PKIRCNAVCPGTIMTPMV 190
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 38.3 bits (90), Expect = 0.002
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K + L+ ++ R + NA+ PG V T
Sbjct: 158 AYACTKAAIETLT----RYVATQYGRHGVRCNAIAPGLVRTPRL 197
Score = 32.9 bits (76), Expect = 0.13
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 326 VNAVHPGYVNTDLT 339
NA+ PG V T
Sbjct: 184 CNAIAPGLVRTPRL 197
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 38.3 bits (90), Expect = 0.002
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K V + SK+ + I VNA+ PG ++T
Sbjct: 161 YAGNKAPVEHYT----RAASKELMKQQISVNAIAPGPMDTSFF 199
Score = 33.3 bits (77), Expect = 0.089
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K V + SK+ + I VNA+ PG ++T
Sbjct: 165 KAPVEHYT----RAASKELMKQQISVNAIAPGPMDTSFF 199
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK G++ + L+++ I N+V P V T++
Sbjct: 170 AYCTSKAGLVMAT----KVLARELGPHGIRANSVCPTVVLTEMG 209
Score = 32.1 bits (74), Expect = 0.23
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 324 IIVNAVHPGYVNTDLT 339
I N+V P V T++
Sbjct: 194 IRANSVCPTVVLTEMG 209
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 38.2 bits (90), Expect = 0.002
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 244 PYTVSKVGVIKLS---FIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y+ SK V L+ + + I VN++HP + T +
Sbjct: 150 GYSASKAAVSALTRAAALSCR-----KQGYAIRVNSIHPDGIYTPMM 191
Score = 32.8 bits (76), Expect = 0.15
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 326 VNAVHPGYVNTDLT 339
VN++HP + T +
Sbjct: 178 VNSIHPDGIYTPMM 191
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 38.3 bits (90), Expect = 0.002
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK + + L+++ I VNAV PG + TDL
Sbjct: 181 YAASKAAIDTFT----IGLAREVAAEGIRVNAVRPGIIETDLH 219
Score = 33.7 bits (78), Expect = 0.068
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K + + L+++ I VNAV PG + TDL
Sbjct: 185 KAAIDTFT----IGLAREVAAEGIRVNAVRPGIIETDLH 219
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 38.2 bits (90), Expect = 0.002
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K + L+ ++ + I VNAV+P V T +
Sbjct: 148 VYCSTKGALDMLT----KVMALELGPHKIRVNAVNPTVVMTSMG 187
Score = 32.8 bits (76), Expect = 0.12
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VNAV+P V T +
Sbjct: 172 IRVNAVNPTVVMTSMG 187
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 38.3 bits (90), Expect = 0.002
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y+ SK V Q T ++D I VN PG V T +
Sbjct: 151 VYSSSKFAVR--GLTQ--TAARDLAPLGITVNGYCPGIVKTPMW 190
Score = 33.7 bits (78), Expect = 0.069
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K V Q T ++D I VN PG V T +
Sbjct: 156 KFAVR--GLTQ--TAARDLAPLGITVNGYCPGIVKTPMW 190
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 38.3 bits (90), Expect = 0.002
Identities = 28/144 (19%), Positives = 43/144 (29%), Gaps = 48/144 (33%)
Query: 153 APFGQQAE----TTLATNFFALVTVCHMLFPLLRPHARVVNVASQYGMLYKVPSQELKQT 208
PF Q +E A N L PL+R +V +S
Sbjct: 96 EPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVAD------------- 142
Query: 209 LLNDSLTEDQLVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATLSKDQT 268
G G Y+ SK ++ + + L+ +
Sbjct: 143 ----------EGGH---------------PGMS--VYSASKAALVSFA----SVLAAELL 171
Query: 269 RPDIIVNAVHPGYVNTDLTGHKGI 292
I VN+V PG+++T G GI
Sbjct: 172 PRGIRVNSVSPGFIDTPTKGVAGI 195
Score = 34.8 bits (81), Expect = 0.032
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 324 IIVNAVHPGYVNTDLTGHKGILTTEQGSVSSVKGALIP 361
I VN+V PG+++T G GI E+ ++ + P
Sbjct: 175 IRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITP 212
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 38.3 bits (90), Expect = 0.002
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
PY +K V ++ L+ D++ + VN + PG + T L
Sbjct: 153 PYVATKGAVTAMT----KALALDESPYGVRVNCISPGNIWTPLW 192
Score = 32.9 bits (76), Expect = 0.12
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 326 VNAVHPGYVNTDLTGHKGILTTEQGSVSSVKGALIP 361
VN + PG + T L L + + P
Sbjct: 179 VNCISPGNIWTPLWEELAALMPDPRASIREGMLAQP 214
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 38.3 bits (90), Expect = 0.003
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y+ SK + +++ +L+ + + +I VN+V PG + T L
Sbjct: 170 LYSASKGAINQMT----KSLACEWAKDNIRVNSVAPGVILTPLV 209
Score = 33.7 bits (78), Expect = 0.077
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN+V PG + T L
Sbjct: 194 IRVNSVAPGVILTPLV 209
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 38.3 bits (90), Expect = 0.003
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 289
YT SK G+ L + +++ + + V+ V PG V T+
Sbjct: 179 YTASKWGLNGLM----TSAAEELRQHQVRVSLVAPGSVRTEFGVG 219
Score = 34.5 bits (80), Expect = 0.037
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGHKGILTTEQGSVSSVKGALI 360
K G+ L + +++ + + V+ V PG V T+ L+ ++ I
Sbjct: 183 KWGLNGLM----TSAAEELRQHQVRVSLVAPGSVRTEFGVG---LSAKK-----SALGAI 230
Query: 361 PPDA 364
PD
Sbjct: 231 EPDD 234
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 38.2 bits (90), Expect = 0.003
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y+ +K + L+ ++ + I VN+V+P V TD+
Sbjct: 148 TYSSTKGAMTMLT----KAMAMELGPHKIRVNSVNPTVVLTDMG 187
Score = 32.8 bits (76), Expect = 0.12
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN+V+P V TD+
Sbjct: 172 IRVNSVNPTVVLTDMG 187
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 38.4 bits (90), Expect = 0.003
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 23/97 (23%)
Query: 235 DQEAGWPDD-PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGHKGIL 293
E W PY ++K G+ + ++++ I N + P +
Sbjct: 155 RLEPKWLRPTPYMMAKYGMTLCA----LGIAEELRDAGIASNTLWPRTT---------VA 201
Query: 294 TMTIHTLKVGVIKLSFIQHATLSKDQTRPDIIVNAVH 330
T + L G + +P++ +A +
Sbjct: 202 TAAVQNLLGGDEAM---------ARSRKPEVYADAAY 229
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 38.2 bits (90), Expect = 0.003
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y+ +K VI L+ +++ D + I N V PG V+T
Sbjct: 147 YSTTKAAVIGLT----KSVAADFIQQGIRCNCVCPGTVDTPSL 185
Score = 31.7 bits (73), Expect = 0.32
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 324 IIVNAVHPGYVNTDLT 339
I N V PG V+T
Sbjct: 170 IRCNCVCPGTVDTPSL 185
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 37.9 bits (89), Expect = 0.003
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y ++ + L + +K +R I++ A+ P + N
Sbjct: 147 YGPARAATVALV----ESAAKTLSRDGILLYAIGPNFFNNPTY 185
Score = 32.5 bits (75), Expect = 0.18
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 324 IIVNAVHPGYVNTDLT 339
I++ A+ P + N
Sbjct: 170 ILLYAIGPNFFNNPTY 185
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 37.9 bits (89), Expect = 0.003
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 239 GWPD-DPYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
P+ Y +K V+ ++ L+ + I V A++P T L
Sbjct: 153 PRPNLAWYNATKGWVVSVT----KALAIELAPAKIRVVALNPVAGETPLL 198
Score = 31.7 bits (73), Expect = 0.32
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 324 IIVNAVHPGYVNTDLT 339
I V A++P T L
Sbjct: 183 IRVVALNPVAGETPLL 198
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 37.9 bits (89), Expect = 0.003
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK G+ ++ TL+ + I VN + PG +NT +
Sbjct: 158 YAASKGGMKLMT----ETLALEYAPKGIRVNNIGPGAINTPIN 196
Score = 32.1 bits (74), Expect = 0.21
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K G+ ++ TL+ + I VN + PG +NT +
Sbjct: 162 KGGMKLMT----ETLALEYAPKGIRVNNIGPGAINTPIN 196
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.003
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 10/97 (10%)
Query: 4 KKEQEEEEEEEKKKKK---KKKKKKKKF----LQLDTNRILT--RSMNARFLRKFYQQER 54
+ + K K +K+ K+ + L+ L +++ + Y +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-YNIPK 457
Query: 55 ISQHRFLIEGVNAGYVWAPLMHRLQNGEHFRVVVVFE 91
LI Y ++ + H L+N EH + +F
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Score = 38.7 bits (89), Expect = 0.003
Identities = 65/437 (14%), Positives = 129/437 (29%), Gaps = 123/437 (28%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKKFLQLDTNRILTRSMNARFLRKFYQQERISQHRFLIE 63
+ ++ ++ K K++ + T + L K QE + Q +F+ E
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQ-KFVEE 85
Query: 64 GVNAGYVWAPLMHRLQN----GEHFRVVVVFELERLV--------HNMPGGNGADARQQE 111
+ Y + LM ++ + + + +RL +N+ R Q
Sbjct: 86 VLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-------RLQP 136
Query: 112 KGEGKHCPCIPLTTGGSEDSKHSTTSVILVGEHKKTSVKGNAPFGQQAETTLATNFFALV 171
+ L E +V++ G V G G+ T +A +
Sbjct: 137 YLK--------LRQALLELRPAK--NVLIDG------VLG---SGK---TWVALD----- 169
Query: 172 TVCHMLFPLLRPHARV--VNVASQYGMLYKVPSQELK--QTLL-----NDSLTEDQLVGM 222
VC + ++ +N+ + P L+ Q LL N + D +
Sbjct: 170 -VCLSYKVQCKMDFKIFWLNLKN-----CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 223 MHDYVKLAKEGKDQEAGWP--------DDPYTVSKVGVIKLSF-IQHATL--SKDQTRPD 271
+ E + P + V +F + L ++ + D
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLN---VQNAKAWN-AFNLSCKILLTTRFKQVTD 279
Query: 272 IIVNAVHPGYVNTD-----LTGHKG------ILTMTIHTLKVGVIK-----LSFIQHATL 315
++A +++ D LT + L L V+ LS I ++
Sbjct: 280 -FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA-ESI 337
Query: 316 SKDQTRPDIIVNAVHPGYVNTDLTGHKGILTTEQGSVSSVKG----------ALIPPDAK 365
D N + T + S++ ++ ++ PP A
Sbjct: 338 RDGLATWD-----------NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 366 EPRG--QFIWYDGSIVD 380
P IW+D D
Sbjct: 387 IPTILLSLIWFDVIKSD 403
Score = 38.7 bits (89), Expect = 0.004
Identities = 56/385 (14%), Positives = 117/385 (30%), Gaps = 112/385 (29%)
Query: 1 IISKKE-----QEEEEEEEKKK-----KKKKKKKKKKFLQ--LDTN------RILTRSMN 42
I+SK+E ++ + K+++ +KF++ L N I T
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 43 ARFLRKFYQQERISQHRFLIEGVNAGYVWAP-------LMHRLQNGEHFRVVVVFELER- 94
+ + Y ++R + N V+A +L+ + EL
Sbjct: 105 PSMMTRMYIEQRDRLY-------NDNQVFAKYNVSRLQPYLKLRQA-------LLELRPA 150
Query: 95 ---LVHNMPGGNG---------ADARQQEKGEGK---------HCP----------CIPL 123
L+ + G+G + Q K + K + P +
Sbjct: 151 KNVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 124 TTGGSEDSKHSTTSVILVGEHKKTSVKGNAPFGQQAETTL----------ATNFFALVTV 173
+ S HS+ ++ L + ++ + E L A N F L
Sbjct: 210 DPNWTSRSDHSS-NIKLRIHSIQAELR-RLLKSKPYENCLLVLLNVQNAKAWNAFNLS-- 265
Query: 174 CHMLFPLLRPHARVVNVASQYGMLYKVPSQELKQTLLNDSLTEDQLVGMMHDYVKLAKEG 233
C +L L +V + S S + + +LT D++ ++ Y+ +
Sbjct: 266 CKIL--LTTRFKQVTDFLS--AATTTHISLDH----HSMTLTPDEVKSLLLKYLDCRPQ- 316
Query: 234 KDQEAGWPDDPYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGHKGIL 293
D P V +LS I ++ D + + + I+
Sbjct: 317 --------DLPREVLTTNPRRLSIIA-ESIRDGLATWD--------NWKHVNCDKLTTII 359
Query: 294 TMTIHTLKVGVIKLSFIQHATLSKD 318
+++ L+ + F + +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPS 384
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 37.9 bits (89), Expect = 0.004
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
+ ++ GV L +++ + + VN + G V +
Sbjct: 158 ATSAARAGVKNLV----RSMAFEFAPKGVRVNGILIGLVESGQW 197
Score = 31.8 bits (73), Expect = 0.28
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
+ GV L +++ + + VN + G V +
Sbjct: 163 RAGVKNLV----RSMAFEFAPKGVRVNGILIGLVESGQW 197
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 37.5 bits (88), Expect = 0.004
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK V L+ ++ D I VNA+ PG + TD
Sbjct: 160 YGSSKAAVNHLT----RNIAFDVGPMGIRVNAIAPGAIKTDAL 198
Score = 33.3 bits (77), Expect = 0.096
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGHKGILTTEQ 349
K V L+ ++ D I VNA+ PG + TD +LT E
Sbjct: 164 KAAVNHLT----RNIAFDVGPMGIRVNAIAPGAIKTDAL--ATVLTPEI 206
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 37.6 bits (88), Expect = 0.004
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K G++ L+ T++ + + VN++ PGYV T L
Sbjct: 175 AYVAAKHGIMGLT----KTVALEVAESGVTVNSICPGYVLTPLV 214
Score = 33.0 bits (76), Expect = 0.12
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 324 IIVNAVHPGYVNTDLT 339
+ VN++ PGYV T L
Sbjct: 199 VTVNSICPGYVLTPLV 214
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 37.5 bits (88), Expect = 0.004
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTG------HKGILTMT 296
PY +K L+ +L+ + P VN + PGY++TD+T +T
Sbjct: 186 PYNTAKAACTHLA----KSLAI-EWAPFARVNTISPGYIDTDITDFASKDMKAKWWQLT 239
Score = 31.4 bits (72), Expect = 0.44
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 326 VNAVHPGYVNTDLTG 340
VN + PGY++TD+T
Sbjct: 211 VNTISPGYIDTDITD 225
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 37.6 bits (88), Expect = 0.004
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
YT +K + + L+ + + I VNAV PG + T+++
Sbjct: 179 AYTATKAAQVAIV----QQLALELGKHHIRVNAVCPGAIETNIS 218
Score = 32.6 bits (75), Expect = 0.20
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VNAV PG + T+++
Sbjct: 203 IRVNAVCPGAIETNIS 218
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 37.5 bits (88), Expect = 0.004
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
PY VSK ++ L+ L+ + +I VN + PG + T+ +
Sbjct: 163 PYNVSKTALLGLT----KNLAVELAPRNIRVNCLAPGLIKTNFS 202
Score = 30.2 bits (69), Expect = 1.0
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN + PG + T+ +
Sbjct: 187 IRVNCLAPGLIKTNFS 202
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 37.5 bits (88), Expect = 0.005
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK + L+ ++ D + I VNAV PG +++
Sbjct: 172 AYVASKGAISSLT----RAMAMDHAKEGIRVNAVAPGTIDSPYF 211
Score = 31.8 bits (73), Expect = 0.31
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 326 VNAVHPGYVNTDLT 339
VNAV PG +++
Sbjct: 198 VNAVAPGTIDSPYF 211
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 37.5 bits (88), Expect = 0.005
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK V+ + L+K+ P I VNAV PG ++T
Sbjct: 158 YATSKGAVMTFT----RGLAKEVG-PKIRVNAVCPGMISTTFH 195
Score = 33.7 bits (78), Expect = 0.078
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 322 PDIIVNAVHPGYVNTDLT 339
P I VNAV PG ++T
Sbjct: 178 PKIRVNAVCPGMISTTFH 195
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 37.1 bits (87), Expect = 0.005
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 238 AGWPDD-PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
AG+ PY SK G+I L L+ + I VNA+ PG +T
Sbjct: 151 AGFAGVAPYAASKAGLIGLV----QALAVELGARGIRVNALLPGGTDTPAN 197
Score = 31.7 bits (73), Expect = 0.37
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 326 VNAVHPGYVNTDLT 339
VNA+ PG +T
Sbjct: 184 VNALLPGGTDTPAN 197
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 37.1 bits (87), Expect = 0.005
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K I + L+ D + I VNA+ P V T T
Sbjct: 154 YISTKAANIGFT----RALASDLGKDGITVNAIAPSLVRTATT 192
Score = 32.5 bits (75), Expect = 0.16
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K I + L+ D + I VNA+ P V T T
Sbjct: 158 KAANIGFT----RALASDLGKDGITVNAIAPSLVRTATT 192
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 37.2 bits (87), Expect = 0.006
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 239 GWPDDP-YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGHKGI 292
PD P Y+++K + + + + D + I VN++ PG V T G+
Sbjct: 155 ATPDFPYYSIAKAAIDQYT----RNTAIDLIQHGIRVNSISPGLVATGFGSAMGM 205
Score = 32.6 bits (75), Expect = 0.18
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 324 IIVNAVHPGYVNTDLTGHKGI 344
I VN++ PG V T G+
Sbjct: 185 IRVNSISPGLVATGFGSAMGM 205
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 37.1 bits (87), Expect = 0.006
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 20/52 (38%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTR-------PD-IIVNAVHPGYVNTDLT 287
Y +K + +L TR D I VN V PG + T L
Sbjct: 158 VYGATKGAMDQL------------TRCLAFEWAKDNIRVNGVGPGVIATSLV 197
Score = 32.8 bits (76), Expect = 0.16
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN V PG + T L
Sbjct: 182 IRVNGVGPGVIATSLV 197
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 37.1 bits (87), Expect = 0.006
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K GV+ L+ + + + +NAV P
Sbjct: 174 YAAAKAGVMALT----RCSAIEAVEFGVRINAVSPSIARHKFL 212
Score = 32.1 bits (74), Expect = 0.21
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K GV+ L+ + + + +NAV P
Sbjct: 178 KAGVMALT----RCSAIEAVEFGVRINAVSPSIARHKFL 212
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 37.2 bits (87), Expect = 0.006
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K G+ L+ ++ + +I N + PGY+ T T
Sbjct: 182 AYAAAKGGLKMLT----KNIASEYGEANIQCNGIGPGYIATPQT 221
Score = 30.3 bits (69), Expect = 0.95
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 324 IIVNAVHPGYVNTDLT 339
I N + PGY+ T T
Sbjct: 206 IQCNGIGPGYIATPQT 221
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 36.8 bits (86), Expect = 0.007
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +SK G+ S L+ I V V PG + +D+T
Sbjct: 184 YCMSKAGLAAFS----QGLALRLAETGIAVFEVRPGIIRSDMT 222
Score = 32.6 bits (75), Expect = 0.20
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 324 IIVNAVHPGYVNTDLT 339
I V V PG + +D+T
Sbjct: 207 IAVFEVRPGIIRSDMT 222
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 36.7 bits (86), Expect = 0.007
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y K+GV+ L+ TL+ + R + VN + PG + T +T
Sbjct: 149 YAAGKLGVVGLA----RTLALELARKGVRVNVLLPGLIQTPMT 187
Score = 32.5 bits (75), Expect = 0.15
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K+GV+ L+ TL+ + R + VN + PG + T +T
Sbjct: 153 KLGVVGLA----RTLALELARKGVRVNVLLPGLIQTPMT 187
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 36.8 bits (86), Expect = 0.007
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK V+ L+ L+ + + VNA+ PGYV T T
Sbjct: 177 AYAASKHAVVGLT----RALASEWAGRGVGVNALAPGYVVTANT 216
Score = 31.0 bits (71), Expect = 0.53
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 324 IIVNAVHPGYVNTDLT 339
+ VNA+ PGYV T T
Sbjct: 201 VGVNALAPGYVVTANT 216
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 36.8 bits (86), Expect = 0.007
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 289
Y SK + +LS L+K+ I VN + PG + +T H
Sbjct: 181 AYGPSKAALHQLS----RMLAKELVGEHINVNVIAPGRFPSRMTRH 222
Score = 29.8 bits (68), Expect = 1.2
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 324 IIVNAVHPGYVNTDLTGH 341
I VN + PG + +T H
Sbjct: 205 INVNVIAPGRFPSRMTRH 222
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 36.8 bits (86), Expect = 0.008
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 238 AGWPDDPYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
G P +++K G+ ++ +L+ + +R + VNAV PG + T +
Sbjct: 163 VGMPSALASLTKGGLNAVT----RSLAMEFSRSGVRVNAVSPGVIKTPMH 208
Score = 31.4 bits (72), Expect = 0.41
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K G+ ++ +L+ + +R + VNAV PG + T +
Sbjct: 174 KGGLNAVT----RSLAMEFSRSGVRVNAVSPGVIKTPMH 208
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 36.8 bits (86), Expect = 0.008
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
YT +K V+ L+ +L + I VN V P V + L
Sbjct: 166 VYTATKHAVLGLT----TSLCTELGEYGIRVNCVSPYIVASPLL 205
Score = 31.4 bits (72), Expect = 0.39
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 326 VNAVHPGYVNTDLT 339
VN V P V + L
Sbjct: 192 VNCVSPYIVASPLL 205
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 36.8 bits (86), Expect = 0.008
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 289
Y +K ++ L+ +L ++ I V + PG+VNTD+
Sbjct: 158 YGSTKFALLGLA----ESLYRELAPLGIRVTTLCPGWVNTDMAKK 198
Score = 32.9 bits (76), Expect = 0.12
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 341
K ++ L+ +L ++ I V + PG+VNTD+
Sbjct: 162 KFALLGLA----ESLYRELAPLGIRVTTLCPGWVNTDMAKK 198
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 36.7 bits (86), Expect = 0.008
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
VSK + L+ L+ + + IIVNAV G ++TD
Sbjct: 154 VGVSKAALEALT----RYLAVELSPKQIIVNAVSGGAIDTDAL 192
Score = 31.3 bits (72), Expect = 0.40
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 324 IIVNAVHPGYVNTDLT 339
IIVNAV G ++TD
Sbjct: 177 IIVNAVSGGAIDTDAL 192
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 36.8 bits (86), Expect = 0.009
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y ++K + + + + + D + I VN+V PG V T T
Sbjct: 162 YAIAKAALDQYT----RSTAIDLAKFGIRVNSVSPGMVETGFT 200
Score = 31.4 bits (72), Expect = 0.41
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN+V PG V T T
Sbjct: 185 IRVNSVSPGMVETGFT 200
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 36.3 bits (85), Expect = 0.009
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 244 PYTVSKVGVIKLSFIQHAT--LSKDQTRPDIIVNAVHPGYVNTDLT 287
PYT +K G+ L T ++ + + +I NA+ PGY+ TD+
Sbjct: 158 PYTAAKGGIKML------TCSMAAEWAQFNIQTNAIGPGYILTDMN 197
Score = 30.9 bits (71), Expect = 0.56
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 324 IIVNAVHPGYVNTDLT 339
I NA+ PGY+ TD+
Sbjct: 182 IQTNAIGPGYILTDMN 197
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 36.5 bits (85), Expect = 0.010
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
PYT SK GV+ + ++ + + I VNAV PGYV T +
Sbjct: 174 PYTASKHGVVGFT----KSVGFELAKTGITVNAVCPGYVETPMA 213
Score = 31.8 bits (73), Expect = 0.29
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K GV+ + ++ + + I VNAV PGYV T +
Sbjct: 179 KHGVVGFT----KSVGFELAKTGITVNAVCPGYVETPMA 213
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 36.4 bits (85), Expect = 0.011
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y V+K G I ++ +L+ + R VN++ PGY++T L+
Sbjct: 174 SYNVAKAGCIHMA----RSLAN-EWRDFARVNSISPGYIDTGLS 212
Score = 31.4 bits (72), Expect = 0.47
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 326 VNAVHPGYVNTDLT 339
VN++ PGY++T L+
Sbjct: 199 VNSISPGYIDTGLS 212
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 36.4 bits (85), Expect = 0.011
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K + + T+ + N V PG V+T
Sbjct: 164 YGAAKAFLHNVH----KNWVDFHTKDGVRFNIVSPGTVDTAFH 202
Score = 31.4 bits (72), Expect = 0.36
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K + + T+ + N V PG V+T
Sbjct: 168 KAFLHNVH----KNWVDFHTKDGVRFNIVSPGTVDTAFH 202
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 36.4 bits (85), Expect = 0.011
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 289
Y SK L L+ + I VNA+ PGYVNTD T H
Sbjct: 171 FYNSSKAACSNLV----KGLAAEWASAGIRVNALSPGYVNTDQTAH 212
Score = 32.1 bits (74), Expect = 0.26
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 324 IIVNAVHPGYVNTDLTGH 341
I VNA+ PGYVNTD T H
Sbjct: 195 IRVNALSPGYVNTDQTAH 212
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 36.3 bits (85), Expect = 0.012
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y+ +K + +L+ L+ + I NAV P + T L
Sbjct: 163 IYSATKGALNQLA----RNLACEWASDGIRANAVAPAVIATPLA 202
Score = 32.1 bits (74), Expect = 0.21
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 324 IIVNAVHPGYVNTDLT 339
I NAV P + T L
Sbjct: 187 IRANAVAPAVIATPLA 202
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 35.9 bits (84), Expect = 0.013
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 244 PYTVSKVGVIKLSFIQHAT--LSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK GV L T L+K+ R I VN + PG+ T +T
Sbjct: 171 AYAASKGGVASL------TKALAKEWGRYGIRVNVIAPGWYRTKMT 210
Score = 30.6 bits (70), Expect = 0.86
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN + PG+ T +T
Sbjct: 195 IRVNVIAPGWYRTKMT 210
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 35.7 bits (83), Expect = 0.014
Identities = 11/140 (7%), Positives = 29/140 (20%), Gaps = 51/140 (36%)
Query: 153 APFGQ----QAETTLATNFFALVTVCHMLFPLLRPHARVVNVASQYGMLYKVPSQELKQT 208
+P + + T+++ + + + L
Sbjct: 72 SPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMM------------- 118
Query: 209 LLNDSLTEDQLVGMMHDYVKLAKEGKDQEAGWPDD-PYTVSKVGVIKLSFIQHATLSKDQ 267
E ++ V +F + + + +
Sbjct: 119 ----------------------------EDPIVQGASAAMANGAVT--AFAK--SAAIEM 146
Query: 268 TRPDIIVNAVHPGYVNTDLT 287
R I +N V P +
Sbjct: 147 PR-GIRINTVSPNVLEESWD 165
Score = 29.2 bits (66), Expect = 1.7
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 322 PDIIVNAVHPGYVNTDLT 339
I +N V P +
Sbjct: 148 RGIRINTVSPNVLEESWD 165
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 36.0 bits (84), Expect = 0.014
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y+ SK V + L+++ +I VN V PG+V T +
Sbjct: 159 YSASKFAVFGWT----QALAREMAPKNIRVNCVCPGFVKTAMQ 197
Score = 31.4 bits (72), Expect = 0.40
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K V + L+++ +I VN V PG+V T +
Sbjct: 163 KFAVFGWT----QALAREMAPKNIRVNCVCPGFVKTAMQ 197
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 36.1 bits (84), Expect = 0.015
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
PY+ SK GV+ + L + R I VNAV PG+V T +
Sbjct: 172 PYSASKHGVVGFT----KALGLELARTGITVNAVCPGFVETPMA 211
Score = 31.1 bits (71), Expect = 0.58
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VNAV PG+V T +
Sbjct: 196 ITVNAVCPGFVETPMA 211
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 36.1 bits (84), Expect = 0.016
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGHKGI 292
Y +K + + + + D + + VN+V PG V T G G+
Sbjct: 180 YACAKAALDQYT----RCTAIDLIQHGVRVNSVSPGAVATGFMGAMGL 223
Score = 31.1 bits (71), Expect = 0.55
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 324 IIVNAVHPGYVNTDLTGHKGI 344
+ VN+V PG V T G G+
Sbjct: 203 VRVNSVSPGAVATGFMGAMGL 223
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 35.7 bits (83), Expect = 0.016
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K GV+ + + + I NA+ PG+V T L
Sbjct: 154 AYVAAKHGVVGFT----KVTALETAGQGITANAICPGWVRTPLV 193
Score = 31.8 bits (73), Expect = 0.28
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 324 IIVNAVHPGYVNTDLT 339
I NA+ PG+V T L
Sbjct: 178 ITANAICPGWVRTPLV 193
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 35.6 bits (83), Expect = 0.017
Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 20/59 (33%)
Query: 237 EAGWPDD-PYTVSKVGVIKLSFIQHATLSKDQTR-------PDIIVNAVHPGYVNTDLT 287
G Y +K G+ L T P + VN + P +
Sbjct: 161 RKGSSKHIAYCATKAGLESL------------TLSFAARFAPLVKVNGIAPALLMFQPK 207
Score = 30.6 bits (70), Expect = 0.77
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 322 PDIIVNAVHPGYVNTDLT 339
P + VN + P +
Sbjct: 190 PLVKVNGIAPALLMFQPK 207
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 35.6 bits (83), Expect = 0.020
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
+ ++ VI + TL+ + + VNAV P + TD
Sbjct: 157 SNIMRLPVIGVV----RTLALELAPHGVTVNAVLPSLILTDRV 195
Score = 32.9 bits (76), Expect = 0.14
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 299 TLKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
+++ VI + TL+ + + VNAV P + TD
Sbjct: 159 IMRLPVIGVV----RTLALELAPHGVTVNAVLPSLILTDRV 195
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 35.2 bits (82), Expect = 0.024
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K GV+ L+ + + ++ NA+ PG+V T L
Sbjct: 150 AYVAAKHGVVGLT----KVVGLETATSNVTCNAICPGWVLTPLV 189
Score = 31.8 bits (73), Expect = 0.26
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 324 IIVNAVHPGYVNTDLT 339
+ NA+ PG+V T L
Sbjct: 174 VTCNAICPGWVLTPLV 189
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 35.2 bits (82), Expect = 0.025
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y+ +K + LS +L++ T ++ VN + PG T+
Sbjct: 157 YSATKTMQLSLS----RSLAELTTGTNVTVNTIMPGSTLTEGV 195
Score = 29.8 bits (68), Expect = 1.2
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K + LS +L++ T ++ VN + PG T+
Sbjct: 161 KTMQLSLS----RSLAELTTGTNVTVNTIMPGSTLTEGV 195
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 34.8 bits (81), Expect = 0.028
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
YT ++ G L+ LSK+ +I V A+ P Y++++ +
Sbjct: 145 YTSARAGACTLA----NALSKELGEYNIPVFAIGPNYLHSEDS 183
Score = 30.2 bits (69), Expect = 0.92
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 324 IIVNAVHPGYVNTDLT 339
I V A+ P Y++++ +
Sbjct: 168 IPVFAIGPNYLHSEDS 183
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 34.9 bits (81), Expect = 0.034
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPG-YVNTDLT 287
YT++K+G+ ++ L+ + + +NA+ P + TD
Sbjct: 163 GYTLAKMGMSLVTL----GLAAEFGPQGVAINALWPRTVIATDAI 203
Score = 29.9 bits (68), Expect = 1.3
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPG-YVNTDLTGH-KGILTTEQGSVSSVKGA 358
K+G+ ++ L+ + + +NA+ P + TD G+ + A
Sbjct: 168 KMGMSLVTL----GLAAEFGPQGVAINALWPRTVIATDAINMLPGVDAAACRRPEIMADA 223
Query: 359 ---LIPPDAKEPRGQFIWYDG 376
++ +A GQF+ D
Sbjct: 224 AHAVLTREAAGFHGQFLIDDE 244
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 34.5 bits (80), Expect = 0.043
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 289
Y SK + L+ K++ I V+ V PG NT +
Sbjct: 146 YAASKHALRGLA----DAFRKEEANNGIRVSTVSPGPTNTPMLQG 186
Score = 31.0 bits (71), Expect = 0.56
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGHKGILTTEQGSVSSVKGALI 360
K + L+ K++ I V+ V PG NT + L QG+ + +
Sbjct: 150 KHALRGLA----DAFRKEEANNGIRVSTVSPGPTNTPMLQG---LMDSQGTNFRPEIYIE 202
Query: 361 PPD 363
P +
Sbjct: 203 PKE 205
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 34.0 bits (79), Expect = 0.049
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K GVI + L+ + + +I NAV PG + +D
Sbjct: 153 YVAAKGGVIGFT----RALATELGKYNITANAVTPGLIESDGV 191
Score = 30.2 bits (69), Expect = 0.92
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K GVI + L+ + + +I NAV PG + +D
Sbjct: 157 KGGVIGFT----RALATELGKYNITANAVTPGLIESDGV 191
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 34.1 bits (79), Expect = 0.054
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
+ +KVG++ L+ T++ ++ I N V PG + ++
Sbjct: 161 FAAAKVGLVSLT----KTVAYEEAEYGITANMVCPGDIIGEMK 199
Score = 30.2 bits (69), Expect = 0.97
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
KVG++ L+ T++ ++ I N V PG + ++
Sbjct: 165 KVGLVSLT----KTVAYEEAEYGITANMVCPGDIIGEMK 199
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 34.2 bits (79), Expect = 0.062
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 289
Y +K GVI L+ ++D + I VN + PG + T +
Sbjct: 187 YAAAKAGVIGLTI----AAARDLSSAGIRVNTIAPGTMKTPIMES 227
Score = 28.8 bits (65), Expect = 2.9
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 341
K GVI L+ ++D + I VN + PG + T +
Sbjct: 191 KAGVIGLTI----AAARDLSSAGIRVNTIAPGTMKTPIMES 227
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 33.6 bits (78), Expect = 0.066
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y S GV+ L+ TL+ + R I VN + PG++ T +T
Sbjct: 148 YAASMAGVVGLT----RTLALELGRWGIRVNTLAPGFIETRMT 186
Score = 29.8 bits (68), Expect = 1.1
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
GV+ L+ TL+ + R I VN + PG++ T +T
Sbjct: 152 MAGVVGLT----RTLALELGRWGIRVNTLAPGFIETRMT 186
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 33.9 bits (77), Expect = 0.066
Identities = 0/33 (0%), Positives = 0/33 (0%), Gaps = 4/33 (12%)
Query: 4 KKEQEEEEE----EEKKKKKKKKKKKKKFLQLD 32
K+ E
Sbjct: 178 GKQIVFEIPSETH 210
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 33.6 bits (78), Expect = 0.080
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 244 PYTVSKVGVIKLSFIQHAT---LSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K G++ L+ HA L PD++VN + PG++N
Sbjct: 145 AYASAKGGIVALT---HALAMSLG-----PDVLVNCIAPGWINVTEQ 183
Score = 29.8 bits (68), Expect = 1.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 322 PDIIVNAVHPGYVNTDLT 339
PD++VN + PG++N
Sbjct: 166 PDVLVNCIAPGWINVTEQ 183
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 33.7 bits (78), Expect = 0.084
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
P +K GV +S +L+ + + + N + PG + T
Sbjct: 176 PSASAKAGVEAMS----KSLAAEWGKYGMRFNVIQPGPIKTKGA 215
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 33.4 bits (77), Expect = 0.098
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y+ SK V+ + +L+K + +++PG T L
Sbjct: 151 YSASKAAVVSFT----NSLAKLAPITGVTAYSINPGITRTPLV 189
Score = 30.3 bits (69), Expect = 0.88
Identities = 8/76 (10%), Positives = 20/76 (26%), Gaps = 14/76 (18%)
Query: 324 IIVNAVHPGYVNTDLTGH------------KGILTTEQGSVSSVKGALIPPDAKEPRGQF 371
+ +++PG T L + +L+ + + G
Sbjct: 174 VTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIEANKNGAI 233
Query: 372 IWYDGSIVDWNAVSPP 387
D ++ A+
Sbjct: 234 WKLDLGTLE--AIEWT 247
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 33.3 bits (77), Expect = 0.10
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
+++ + TLS + I VN V PG+ T+
Sbjct: 153 SNSARMALTGFL----KTLSFEVAPYGITVNCVAPGWTETERV 191
Score = 31.0 bits (71), Expect = 0.55
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 299 TLKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
+ ++ + TLS + I VN V PG+ T+
Sbjct: 155 SARMALTGFL----KTLSFEVAPYGITVNCVAPGWTETERV 191
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 33.3 bits (77), Expect = 0.11
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK + L+ ++ + + N V PG +TD+
Sbjct: 146 YGASKAALKSLA----LSVGLELAGSGVRCNVVSPGSTDTDMQ 184
Score = 29.0 bits (66), Expect = 2.1
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 324 IIVNAVHPGYVNTDLT 339
+ N V PG +TD+
Sbjct: 169 VRCNVVSPGSTDTDMQ 184
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 32.9 bits (76), Expect = 0.11
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK GVI L+ T +++ R I N+V PG++ T +T
Sbjct: 165 YAASKAGVIGLT----QTAARELGRHGIRCNSVLPGFIATPMT 203
Score = 29.1 bits (66), Expect = 2.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
K GVI L+ T +++ R I N+V PG++ T +T
Sbjct: 169 KAGVIGLT----QTAARELGRHGIRCNSVLPGFIATPMT 203
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 33.3 bits (76), Expect = 0.12
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGY-VNTDLTGHKG 291
YT++K G+ ++++ + +I VNA+ P ++T G
Sbjct: 202 AYTIAKYGMSMYV----LGMAEE-FKGEIAVNALWPKTAIHTAAMDMLG 245
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 32.9 bits (76), Expect = 0.12
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K + T + + I VNA+ PG + T+
Sbjct: 161 YGATKAAQLGFM----RTAAIELAPHKITVNAIMPGNIMTEGL 199
Score = 29.5 bits (67), Expect = 1.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VNA+ PG + T+
Sbjct: 184 ITVNAIMPGNIMTEGL 199
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 33.0 bits (76), Expect = 0.13
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
++ GV L+ +L+ + I +N V PG + +
Sbjct: 170 HSGAARAGVYNLT----KSLALEWACSGIRINCVAPGVIYSQTA 209
Score = 28.4 bits (64), Expect = 4.3
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 301 KVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 339
+ GV L+ +L+ + I +N V PG + +
Sbjct: 175 RAGVYNLT----KSLALEWACSGIRINCVAPGVIYSQTA 209
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 32.9 bits (76), Expect = 0.15
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKD-QTRPDIIVNAVHPGYVNTDLTGHKGILT 294
+K GV+ ++ TL+ + + I VNA+ PG + K ++
Sbjct: 155 HSAAAKAGVLAMT----KTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWIS 202
Score = 28.6 bits (65), Expect = 3.3
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 321 RPDIIVNAVHPGYVNTDLTGHKGILTTEQ 349
+ I VNA+ PG + K ++ E
Sbjct: 177 KYGIRVNAIAPGPIERTGGADKLWISEEM 205
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 33.2 bits (76), Expect = 0.16
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 2 ISKKEQEEEEEEEKKKKKKKKKKKKKFL 29
I+K + EE +EEK +++K+ K+ +
Sbjct: 524 ITKDFELEETDEEKAEREKEIKEYEPLT 551
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 32.5 bits (75), Expect = 0.18
Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 44/131 (33%)
Query: 157 QQAETTLATNFFALVTVCHMLFPLLRPHARVVNVASQYGMLYKVPSQELKQTLLNDSLTE 216
+Q E T N F+ V L+ ++N AS Y+ ++ TL++
Sbjct: 148 EQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVA--YE-GNE----TLID----- 195
Query: 217 DQLVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNA 276
Y+ +K ++ + +LS+ + I VN
Sbjct: 196 ----------------------------YSATKGAIVAFT----RSLSQSLVQKGIRVNG 223
Query: 277 VHPGYVNTDLT 287
V PG + T L
Sbjct: 224 VAPGPIWTPLI 234
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 32.2 bits (74), Expect = 0.20
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
YT++K + L+ + + I VNAV PG
Sbjct: 182 YTMAKHALGGLT----RAAALELAPRHIRVNAVAPGLSLLPPA 220
Score = 27.6 bits (62), Expect = 6.5
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VNAV PG
Sbjct: 205 IRVNAVAPGLSLLPPA 220
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 32.1 bits (74), Expect = 0.23
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK G+I + +++K+ I NAV PG + TD+T
Sbjct: 155 YAASKAGLIGFT----KSIAKEFAAKGIYCNAVAPGIIKTDMT 193
Score = 29.4 bits (67), Expect = 1.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 324 IIVNAVHPGYVNTDLT 339
I NAV PG + TD+T
Sbjct: 178 IYCNAVAPGIIKTDMT 193
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 32.2 bits (74), Expect = 0.24
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y+ +K GVI L+ T++K+ I VNAV PG++ TD+T
Sbjct: 178 YSAAKAGVIGLT----KTVAKELASRGITVNAVAPGFIATDMT 216
Score = 29.5 bits (67), Expect = 1.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VNAV PG++ TD+T
Sbjct: 201 ITVNAVAPGFIATDMT 216
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 32.2 bits (74), Expect = 0.24
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 43/131 (32%)
Query: 160 ETTLATNFFALVTVCHMLFPLL-RPHARVVNVASQYGMLYKVPSQELKQTLLNDSLTEDQ 218
++ NF + V + P+L + + +V V+S G KV
Sbjct: 131 RKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAG---KVAYP--MVA---------- 175
Query: 219 LVGMMHDYVKLAKEGKDQEAGWPDDPYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVH 278
Y+ SK + S + ++ +
Sbjct: 176 -------------------------AYSASKFALDGFFSSIRKEYSVSRV--NVSITLCV 208
Query: 279 PGYVNTDLTGH 289
G ++T+
Sbjct: 209 LGLIDTETAMK 219
Score = 29.1 bits (66), Expect = 2.3
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 320 TRPDIIVNAVHPGYVNTDLTGH 341
+R ++ + G ++T+
Sbjct: 198 SRVNVSITLCVLGLIDTETAMK 219
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 32.1 bits (74), Expect = 0.24
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K GVI S T +++ +I VN V PG++ +D+T
Sbjct: 151 YAAAKAGVIGFS----KTAAREGASRNINVNVVCPGFIASDMT 189
Score = 29.4 bits (67), Expect = 1.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN V PG++ +D+T
Sbjct: 174 INVNVVCPGFIASDMT 189
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 32.2 bits (74), Expect = 0.26
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 2 ISKKEQEEEEEEEKKKKKKKKKKKKKFL 29
I+K + EE +EEK +++K+ K+ +
Sbjct: 252 ITKDFELEETDEEKAEREKEIKEYEPLT 279
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 31.8 bits (73), Expect = 0.26
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 289
Y SK GV+ L+ +++ I V V PG +T L
Sbjct: 148 YAASKGGVVALTL----PAARELAGWGIRVVTVAPGLFDTPLLQG 188
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 31.8 bits (73), Expect = 0.28
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK + T + + + VNA+ PG + T+
Sbjct: 192 YGASKAAQLGFM----RTAAIELAPRGVTVNAILPGNILTEGL 230
Score = 29.1 bits (66), Expect = 2.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 324 IIVNAVHPGYVNTDLT 339
+ VNA+ PG + T+
Sbjct: 215 VTVNAILPGNILTEGL 230
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 31.7 bits (73), Expect = 0.28
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y+ +K G+ + +L+++ + VN V PGY+ TD+
Sbjct: 163 YSTAKAGIHGFT----MSLAQEVATKGVTVNTVSPGYIGTDMV 201
Score = 30.2 bits (69), Expect = 0.95
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 324 IIVNAVHPGYVNTDLT 339
+ VN V PGY+ TD+
Sbjct: 186 VTVNTVSPGYIGTDMV 201
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 31.7 bits (73), Expect = 0.29
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK GVI ++ +++++ ++ ++ N V PGY++TD+T
Sbjct: 153 YAASKAGVIGMA----RSIARELSKANVTANVVAPGYIDTDMT 191
Score = 29.8 bits (68), Expect = 1.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 324 IIVNAVHPGYVNTDLT 339
+ N V PGY++TD+T
Sbjct: 176 VTANVVAPGYIDTDMT 191
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 31.7 bits (73), Expect = 0.29
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K GVI L+ T +K+ +I VNA+ PG++ TD+T
Sbjct: 154 YVAAKAGVIGLT----KTSAKELASRNITVNAIAPGFIATDMT 192
Score = 29.4 bits (67), Expect = 1.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VNA+ PG++ TD+T
Sbjct: 177 ITVNAIAPGFIATDMT 192
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 31.8 bits (73), Expect = 0.30
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K G+ + TL+ + + I VN V PGY+ T +
Sbjct: 175 YASAKAGIHGFT----KTLALETAKRGITVNTVSPGYLATAMV 213
Score = 30.2 bits (69), Expect = 1.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN V PGY+ T +
Sbjct: 198 ITVNTVSPGYLATAMV 213
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 31.8 bits (73), Expect = 0.33
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 289
Y+ SK G++ ++ +++D I V + PG T L
Sbjct: 170 YSASKGGIVGMTL----PIARDLAPIGIRVMTIAPGLFGTPLLTS 210
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 31.7 bits (73), Expect = 0.33
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K GVI S +L+ + +I VN V PG++ TD+T
Sbjct: 154 YCAAKAGVIGFS----KSLAYEVASRNITVNVVAPGFIATDMT 192
Score = 28.6 bits (65), Expect = 2.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN V PG++ TD+T
Sbjct: 177 ITVNVVAPGFIATDMT 192
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 31.8 bits (73), Expect = 0.33
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 2 ISKKEQEEEEEEEKKKKKKKKKKKKKFL 29
I+K + EE +EEK +++K+ K+ +
Sbjct: 252 ITKDFELEETDEEKAEREKEIKEYEPLT 279
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 31.8 bits (73), Expect = 0.34
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y+ SK GVI + +L+K+ +I VNA+ PG++++D+T
Sbjct: 193 YSSSKAGVIGFT----KSLAKELASRNITVNAIAPGFISSDMT 231
Score = 29.1 bits (66), Expect = 2.3
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VNA+ PG++++D+T
Sbjct: 216 ITVNAIAPGFISSDMT 231
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 31.7 bits (73), Expect = 0.35
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K GVI + +++++ + VN V PG++ TD+T
Sbjct: 155 YAAAKAGVIGFT----KSMAREVASRGVTVNTVAPGFIETDMT 193
Score = 29.4 bits (67), Expect = 2.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 324 IIVNAVHPGYVNTDLT 339
+ VN V PG++ TD+T
Sbjct: 178 VTVNTVAPGFIETDMT 193
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 31.3 bits (72), Expect = 0.36
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK G+I ++ +LS + I VNAV PG++ +D+T
Sbjct: 156 YCASKAGLIGMT----KSLSYEVATRGITVNAVAPGFIKSDMT 194
Score = 28.6 bits (65), Expect = 3.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VNAV PG++ +D+T
Sbjct: 179 ITVNAVAPGFIKSDMT 194
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 31.3 bits (72), Expect = 0.39
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y+ +K G+I + +L+K+ +++VNAV PG++ TD+T
Sbjct: 157 YSTTKAGLIGFT----KSLAKELAPRNVLVNAVAPGFIETDMT 195
Score = 29.0 bits (66), Expect = 2.0
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 324 IIVNAVHPGYVNTDLT 339
++VNAV PG++ TD+T
Sbjct: 180 VLVNAVAPGFIETDMT 195
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 31.4 bits (72), Expect = 0.43
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK G++ + +L+++ +I N V PG+V+TD+T
Sbjct: 159 YAASKAGLVGFA----RSLARELGSRNITFNVVAPGFVDTDMT 197
Score = 29.4 bits (67), Expect = 1.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 324 IIVNAVHPGYVNTDLT 339
I N V PG+V+TD+T
Sbjct: 182 ITFNVVAPGFVDTDMT 197
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 31.4 bits (72), Expect = 0.43
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 289
Y SK GV L+ +++ R I V + PG +T +
Sbjct: 163 YAASKGGVAALTL----PAARELARFGIRVVTIAPGIFDTPMMAG 203
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 31.3 bits (72), Expect = 0.44
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K GVI L+ + +++ I VNAV PG++ +D+T
Sbjct: 154 YVATKAGVIGLT----KSAARELASRGITVNAVAPGFIVSDMT 192
Score = 29.4 bits (67), Expect = 1.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VNAV PG++ +D+T
Sbjct: 177 ITVNAVAPGFIVSDMT 192
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 31.4 bits (72), Expect = 0.45
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K GV ++ L+++ I VN V PG+++TD+T
Sbjct: 177 YAAAKAGVAGMT----RALAREIGSRGITVNCVAPGFIDTDMT 215
Score = 29.4 bits (67), Expect = 1.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN V PG+++TD+T
Sbjct: 200 ITVNCVAPGFIDTDMT 215
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 31.0 bits (71), Expect = 0.48
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 289
Y+ SK GV+ ++ +++D I V + PG +T L
Sbjct: 163 YSASKGGVVGMTL----PIARDLASHRIRVMTIAPGLFDTPLLAS 203
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 31.0 bits (71), Expect = 0.50
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K G+I S L+++ +I VN + PG++ + +T
Sbjct: 173 YCAAKAGLIGFS----KALAQEIASRNITVNCIAPGFIKSAMT 211
Score = 28.3 bits (64), Expect = 4.0
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN + PG++ + +T
Sbjct: 196 ITVNCIAPGFIKSAMT 211
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 30.9 bits (71), Expect = 0.51
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y SK G+I + ++K+ + I VNAV PG++ T++T
Sbjct: 152 YVASKAGLIGFT----RAVAKEYAQRGITVNAVAPGFIETEMT 190
Score = 29.4 bits (67), Expect = 1.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VNAV PG++ T++T
Sbjct: 175 ITVNAVAPGFIETEMT 190
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 31.5 bits (72), Expect = 0.54
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K G+I L+ L+ I +NAV PG++ T +T
Sbjct: 360 YATTKAGMIGLA----EALAPVLADKGITINAVAPGFIETKMT 398
Score = 28.0 bits (63), Expect = 5.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 324 IIVNAVHPGYVNTDLT 339
I +NAV PG++ T +T
Sbjct: 383 ITINAVAPGFIETKMT 398
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 30.6 bits (70), Expect = 0.71
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGH 289
Y SK G++ L+ D ++ V V PG V+T G+
Sbjct: 150 YNASKFGLLGLA----GAAMLDLREANVRVVNVLPGSVDTGFAGN 190
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 30.6 bits (70), Expect = 0.73
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y +K ++ S L+K I VN V PG + T L
Sbjct: 199 YAATKAAILNYS----RGLAKQVAEKGIRVNIVAPGPIWTALQ 237
Score = 27.9 bits (63), Expect = 6.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 324 IIVNAVHPGYVNTDLT 339
I VN V PG + T L
Sbjct: 222 IRVNIVAPGPIWTALQ 237
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 30.3 bits (68), Expect = 0.79
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 1 IISKKEQEEEEEEEKKKKKKKKKKKK 26
I+++KEQ + EE+ +KKK +KK
Sbjct: 149 ILTEKEQIVPKPEEEVAQKKKISQKK 174
Score = 28.4 bits (63), Expect = 3.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKKFLQL 31
K++ + EEE +KKK +KK K +L
Sbjct: 153 KEQIVPKPEEEVAQKKKISQKKLKKQKL 180
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 29.9 bits (67), Expect = 0.89
Identities = 5/27 (18%), Positives = 16/27 (59%)
Query: 1 IISKKEQEEEEEEEKKKKKKKKKKKKK 27
++++KE+ + EKK + +++ +
Sbjct: 149 VVTEKEEAVAKAAEKKVVRLTSRQRGR 175
Score = 27.6 bits (61), Expect = 5.5
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKKFLQ 30
K+E + E+K + +++ + Q
Sbjct: 153 KEEAVAKAAEKKVVRLTSRQRGRIAAQ 179
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 30.3 bits (67), Expect = 0.93
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKKFL---------QLDTNRILTRSMNARFLRK 48
+K +E + K +++ ++K KK L Q++ N+I R + F ++
Sbjct: 110 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 163
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 30.5 bits (69), Expect = 0.97
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 1 IISKKEQEEEEEEEKKKKKKKKKKKKK 27
++E EE+ K K+K +K++ +
Sbjct: 312 NQKRRETEEKMRRAKLAKEKAEKERLE 338
Score = 29.3 bits (66), Expect = 1.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKK 27
K+ Q+ E EEK ++ K K+K +
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAE 333
Score = 28.9 bits (65), Expect = 3.1
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 3 SKKEQEEEEEEEKKKKKKKKKKKKK 27
+ KE ++ E E+K ++ K K+K
Sbjct: 308 AVKENQKRRETEEKMRRAKLAKEKA 332
Score = 28.6 bits (64), Expect = 4.1
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKK 27
+ ++ E EE+ ++ K K+K +K
Sbjct: 311 ENQKRRETEEKMRRAKLAKEKAEK 334
Score = 27.8 bits (62), Expect = 7.2
Identities = 5/23 (21%), Positives = 14/23 (60%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKK 26
+E+ + K+K +K++ +K+
Sbjct: 318 TEEKMRRAKLAKEKAEKERLEKQ 340
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 30.7 bits (69), Expect = 0.98
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKKFLQLDTNRI 36
+ + + KKKKKKKKK+ +Q D +
Sbjct: 86 EDGDGDGDGATGKKKKKKKKKRGPKVQTDPPSV 118
Score = 30.3 bits (68), Expect = 1.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 3 SKKEQEEEEEEEKKKKKKKKKKKKKFLQLDTN 34
E + + + KKKKKKKKK+ ++ T+
Sbjct: 83 EDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 29.1 bits (65), Expect = 2.9
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKK 27
++++++E+ + KKKKKK
Sbjct: 80 ERDEDDEDGDGDGDGATGKKKKKK 103
Score = 28.7 bits (64), Expect = 3.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKK 27
+ E +E+ + + KKKKKKK
Sbjct: 81 RDEDDEDGDGDGDGATGKKKKKKK 104
Score = 28.3 bits (63), Expect = 4.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKK 27
K+ E++E+ + KKKKK
Sbjct: 79 KERDEDDEDGDGDGDGATGKKKKK 102
Score = 28.0 bits (62), Expect = 6.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 2 ISKKEQEEEEEEEKKKKKKKKKKKKK 27
+ KE++E++E+ KKKK
Sbjct: 76 LEDKERDEDDEDGDGDGDGATGKKKK 101
Score = 28.0 bits (62), Expect = 7.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKK 27
++E EE KKK++KKKK K
Sbjct: 23 REEGAASTAEEAAKKKRRKKKKSK 46
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 30.4 bits (69), Expect = 1.0
Identities = 9/53 (16%), Positives = 13/53 (24%), Gaps = 12/53 (22%)
Query: 152 NAPFGQQA---ETTLA-------TNFFALVTVCHMLFPLLRP--HARVVNVAS 192
NA G N V + P ++ RV+ S
Sbjct: 90 NAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGS 142
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 29.5 bits (66), Expect = 1.1
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 1 IISKKEQEEEEEEEKKKKKKKKKKKKK 27
+ + +E K KK K KK
Sbjct: 151 FAQEVAAKVRKEAPKDAAKKVPKTKKG 177
Score = 27.6 bits (61), Expect = 5.3
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKK 27
+ +E + KK K KK K
Sbjct: 155 VAAKVRKEAPKDAAKKVPKTKKGK 178
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 30.2 bits (69), Expect = 1.1
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 366 EPRGQFIWYDGSIVDWN 382
+ +IW++G +V W
Sbjct: 3 TKKADYIWFNGEMVRWE 19
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 30.1 bits (68), Expect = 1.2
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 157 QQAETTLATNFFALVTVCHMLFPLLRP--HARVVNVASQYGMLYKVP 201
+Q N + V P +R H ++ ++S P
Sbjct: 109 EQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPP 155
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 30.0 bits (68), Expect = 1.2
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGHK 290
YT++K + L+ + + + I VN V PG + L
Sbjct: 197 YTMAKGALEGLT----RSAALELAPLQIRVNGVGPGL--SVLVDDM 236
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 30.1 bits (68), Expect = 1.3
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLTGHK 290
YT++K + L+ + + + I VN V PG + L
Sbjct: 234 YTMAKGALEGLT----RSAALELAPLQIRVNGVGPGL--SVLVDDM 273
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 29.9 bits (67), Expect = 1.6
Identities = 5/27 (18%), Positives = 18/27 (66%)
Query: 1 IISKKEQEEEEEEEKKKKKKKKKKKKK 27
+ ++++EEEE + + + K+++++
Sbjct: 395 NENMRKKKEEEERRARMEAQLKEQRER 421
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A
{Cryptosporidium parvum}
Length = 113
Score = 28.5 bits (63), Expect = 1.7
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 2 ISKKEQEEEEEEEKKKKKKKKKKKKK 27
I+ +E +EEK++ K K+
Sbjct: 82 ITIQEWNYIRQEEKERINAKNILKRN 107
Score = 27.3 bits (60), Expect = 4.1
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKK 27
++EE+E K K+ ++
Sbjct: 88 NYIRQEEKERINAKNILKRNNRRC 111
>2lhj_A High mobility group protein homolog NHP1; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; NMR {Babesia bovis}
Length = 97
Score = 27.7 bits (62), Expect = 1.9
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 14 EKKKKKKKKKKKKKFLQLDTNRILTRSMNARFLRKFYQQER 54
+ ++ +K KK D N R++++ F +++R
Sbjct: 5 SDRTGVRRPRKAKK----DPNAP-KRALSSYMF--FAKEKR 38
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 29.5 bits (67), Expect = 2.0
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 368 RGQFIWYDGSIVDWN 382
+ IW +G+ V
Sbjct: 4 KAGLIWMNGAFVPQE 18
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 29.1 bits (66), Expect = 2.1
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 368 RGQFIWYDGSIVDWN 382
R IW DG +++W
Sbjct: 27 RDGKIWMDGKLIEWR 41
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 27.7 bits (62), Expect = 2.1
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 14 EKKKKKKKKKKKKKFLQLDTNRILTRSMNARFLRKFYQQER 54
++ KK+ +KKK D N R+++A F + R
Sbjct: 3 TPREPKKRTTRKKK----DPNAP-KRALSAYMF--FANENR 36
>1nz8_A Transcription antitermination protein NUSG; transcription
elongation, riken structural genomics/proteomics
initiative, RSGI; NMR {Thermus thermophilus} SCOP:
d.58.42.1
Length = 119
Score = 27.9 bits (63), Expect = 2.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 8 EEEEEEEKKKKKKKKKKKKKF 28
EE E ++ KK+ +KK F
Sbjct: 41 TEEVVELREGGKKEVVRKKLF 61
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 29.1 bits (64), Expect = 2.5
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 1/97 (1%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKKFLQLDTNRILTRSMNARFL-RKFYQQERISQHRFLI 62
++ E + + +KK K +K +L + R + R + R+++
Sbjct: 44 RRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNF 103
Query: 63 EGVNAGYVWAPLMHRLQNGEHFRVVVVFELERLVHNM 99
+ + R NG +V V +L RL
Sbjct: 104 YVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIF 140
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 29.2 bits (66), Expect = 2.6
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 2 ISKKEQEEEEEEEKKKKKKKKKKKKKFL 29
++K+ E E+EE+KKK+++KK K + L
Sbjct: 254 VTKEGLELPEDEEEKKKQEEKKTKFENL 281
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 28.8 bits (65), Expect = 2.7
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTD 285
+K V ++ L+ + +I VN++ PG ++
Sbjct: 176 HAGSAKAAVDAMT----RHLAVEWGPQNIRVNSLAPGPISGT 213
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 29.2 bits (66), Expect = 2.8
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 2 ISKKEQEEEEEEEKKKKKKKKKKKKKFL 29
++K+ EE EE+K++++++K + L
Sbjct: 270 LTKEGVHFEESEEEKQQREEEKAACEKL 297
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 28.4 bits (64), Expect = 3.4
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 157 QQAETTLATNFFALVTVCHMLFPLLRP--HARVVNVASQYG 195
++ + F + L P +R VVN++S G
Sbjct: 101 RELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGG 141
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 28.4 bits (64), Expect = 3.5
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 245 YTVSKVGVIKLSFIQHATLSKDQTRPDIIVNAVHPGYVNTDLT 287
Y + K ++ L+ + + + I VN V PG +
Sbjct: 194 YNMGKHALVGLT----QSAALELAPYGIRVNGVAPGVSLLPVA 232
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase,
SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A
{Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13
a.187.1.1 PDB: 2nog_A
Length = 304
Score = 28.4 bits (63), Expect = 3.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKK 27
++E E EE+E+ +KKKK K
Sbjct: 277 ERENIELEEKERAEKKKKAPKGSV 300
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 28.4 bits (64), Expect = 3.8
Identities = 9/96 (9%), Positives = 34/96 (35%), Gaps = 14/96 (14%)
Query: 288 GHKGILTMTIHTL-KVGVIKLSFIQHATLSKDQTRPDIIV-NAVHPGYVNTDLTGHKGIL 345
+G K G+ ++ +++++ +I V + + V+T +
Sbjct: 145 SLRGGSGFAAFASAKFGLRAVA----QSMARELMPKNIHVAHLIIDSGVDTAWVRERREQ 200
Query: 346 TTEQGSVSSVKGALIPPD--------AKEPRGQFIW 373
+ ++++ + P ++P+ + +
Sbjct: 201 MFGKDALANPDLLMPPAAVAGAYWQLYQQPKSAWTF 236
Score = 28.4 bits (64), Expect = 3.9
Identities = 6/48 (12%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 244 PYTVSKVGVIKLSFIQHATLSKDQTRPDIIV-NAVHPGYVNTDLTGHK 290
+ +K G+ ++ +++++ +I V + + V+T +
Sbjct: 154 AFASAKFGLRAVA----QSMARELMPKNIHVAHLIIDSGVDTAWVRER 197
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 27.7 bits (62), Expect = 3.8
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 2 ISKKEQEEEEEEEKKKKKKKKKKKKKFLQ 30
+ +E + E +KK + K Q
Sbjct: 133 VVAREMKIVTERRAEKKADSRVTYSKMFQ 161
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 28.7 bits (64), Expect = 4.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKK 27
K+ Q+ E EEK ++ K K+K +
Sbjct: 381 KENQKRRETEEKMRRAKLAKEKAE 404
Score = 28.3 bits (63), Expect = 5.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 3 SKKEQEEEEEEEKKKKKKKKKKKKK 27
+ KE ++ E E+K ++ K K+K
Sbjct: 379 AVKENQKRRETEEKMRRAKLAKEKA 403
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 27.9 bits (61), Expect = 5.4
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 3 SKKEQEEEEEEEKKKKKKKKKKKKKFLQLDT 33
+ ++ + KK K +K ++D
Sbjct: 282 DYTKFNTKDLKTGKKNSKMTAAQKALAKVDK 312
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 27.9 bits (63), Expect = 5.8
Identities = 4/15 (26%), Positives = 10/15 (66%)
Query: 367 PRGQFIWYDGSIVDW 381
G+ +++ G ++DW
Sbjct: 11 SSGENLYFQGHMLDW 25
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 27.9 bits (63), Expect = 6.2
Identities = 3/15 (20%), Positives = 5/15 (33%)
Query: 368 RGQFIWYDGSIVDWN 382
IW+ G +
Sbjct: 11 HHVLIWWRGKFRRAD 25
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 26.5 bits (59), Expect = 6.5
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKK 26
K + EK++ KK K +
Sbjct: 89 MKRVGDYYVFEKRESKKSKGGEA 111
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 27.6 bits (62), Expect = 6.9
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 4 KKEQEEEEEEEKKKKKKKKKKKKKF 28
+KE ++E ++++++KK K KK
Sbjct: 234 EKEDSDDEAAVEEEEEEKKPKTKKV 258
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester,
structural genomi montreal-kingston bacterial structural
genomics initiative; 1.90A {Escherichia coli} SCOP:
c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Length = 531
Score = 27.7 bits (62), Expect = 7.2
Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 15/74 (20%)
Query: 321 RPDIIVN------AVHPGYVNTDLTGHKGILTTEQGSVSSVK------GALIPPDA--KE 366
R + N + ILT E G + + GA + A
Sbjct: 300 RKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITSQGIAFGANVNTRAILDM 359
Query: 367 PRGQFIWYDGSIVD 380
QF +Y G +D
Sbjct: 360 TS-QFDFYHGGGLD 372
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S
initiative, structural genomics; 2.59A {Cytophaga
hutchinsonii}
Length = 146
Score = 26.9 bits (60), Expect = 7.3
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 98 NMPGGNGADA----RQQEKGEGKHCPCIPLTTGGSEDSK 132
NMPG NG + +Q + L++ +
Sbjct: 69 NMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQ 107
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding,
signal recognition particle, GTP-binding, RNA-binding;
2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Length = 432
Score = 27.5 bits (62), Expect = 8.2
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 6 EQEEEEEEEKKKKKKKKKKKKKF 28
E+ E+ +EK ++ + KF
Sbjct: 303 EKAEDMVDEKTEESIDAIMRGKF 325
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant,
chromatin, X- RAY structure, crystallography,
structural protein/DNA complex; 2.90A {Mus musculus}
SCOP: a.22.1.1
Length = 149
Score = 26.8 bits (58), Expect = 8.3
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 15 KKKKKKKKKKKKKFLQLDTNRILTRSMNARFLRKFYQQERISQ 57
K + K K + + LQ R+ R LRK ER+
Sbjct: 29 KARAKAKTRSSRAGLQFPVGRV------HRLLRKGNYSERVGA 65
>1m1h_A Transcription antitermination protein NUSG; transcription
termination, RNP motif, immunoglobulin fold, nucleic
acid interaction; 1.95A {Aquifex aeolicus} SCOP:
b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Length = 248
Score = 27.3 bits (61), Expect = 8.4
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 8 EEEEEEEKKKKKKKKKKKKKF 28
++ +E K + K K F
Sbjct: 115 QKITCKENKTEAKIVLDNKIF 135
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal
recognition particle, SRP-GTPase, protein targeting,
cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus
furiosus}
Length = 443
Score = 27.5 bits (62), Expect = 8.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 5 KEQEEEEEEEKKKKKKKKKKKKKF 28
K +E E+E E K++ ++ + KF
Sbjct: 305 KFKELEKEVEIKEEDIERFLRGKF 328
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics,
protein initiative; 2.04A {Lactobacillus salivarius}
Length = 177
Score = 26.9 bits (60), Expect = 9.6
Identities = 8/57 (14%), Positives = 17/57 (29%)
Query: 1 IISKKEQEEEEEEEKKKKKKKKKKKKKFLQLDTNRILTRSMNARFLRKFYQQERISQ 57
I ++ + +K +K D+ R + L K + + I
Sbjct: 102 IAEDALILYTDKLQVEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDT 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.392
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,775,050
Number of extensions: 344661
Number of successful extensions: 2699
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2458
Number of HSP's successfully gapped: 453
Length of query: 387
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 292
Effective length of database: 4,049,298
Effective search space: 1182395016
Effective search space used: 1182395016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (25.9 bits)