BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16163
         (85 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IML|A Chain A, Cysteine Rich Intestinal Protein, Nmr, 48 Structures
          Length = 76

 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 1/31 (3%)

Query: 12 HKGVPYCHVPCYGALFGPQLFGHGTRVESHT 42
          H+G PYC+ PCY A+FGP+ FG G   ESHT
Sbjct: 45 HEGKPYCNHPCYSAMFGPKGFGRGG-AESHT 74


>pdb|2CU8|A Chain A, Solution Structure Of The Lim Domain Of Human
          Cysteine-Rich Protein 2
          Length = 76

 Score = 31.2 bits (69), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 12 HKGVPYCHVPCYGALFG 28
          H G P+CH PCY  LFG
Sbjct: 54 HDGKPFCHKPCYATLFG 70


>pdb|1CLC|A Chain A, Three-Dimensional Structure Of Endoglucanase D At 1.9
           Angstroms Resolution
          Length = 639

 Score = 25.8 bits (55), Expect = 7.1,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 6   TSVTYTHKGVPYCHVPCY 23
           TSV+ T+ G+ Y H PC+
Sbjct: 147 TSVSATYNGIHYSHGPCH 164


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,851,383
Number of Sequences: 62578
Number of extensions: 105053
Number of successful extensions: 230
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 6
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)