Query psy16163
Match_columns 85
No_of_seqs 131 out of 208
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 22:24:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a7i_A QCRP2 (LIM1); LIM domai 98.3 7.8E-08 2.7E-12 58.7 0.7 36 2-38 42-77 (81)
2 1iml_A CRIP, cysteine rich int 98.2 7.3E-07 2.5E-11 53.7 2.0 40 2-43 35-75 (76)
3 2cu8_A Cysteine-rich protein 2 98.0 1.5E-06 5.2E-11 52.3 1.7 31 2-33 44-75 (76)
4 1x64_A Alpha-actinin-2 associa 97.9 1.8E-06 6.1E-11 53.6 0.5 31 2-33 59-89 (89)
5 1x62_A C-terminal LIM domain p 97.8 1E-06 3.5E-11 53.6 -1.4 31 2-33 49-79 (79)
6 1nyp_A Pinch protein; LIM doma 97.7 6.3E-06 2.2E-10 48.2 0.5 28 2-30 39-66 (66)
7 1x63_A Skeletal muscle LIM-pro 97.6 9.8E-06 3.3E-10 49.0 0.4 29 2-31 51-79 (82)
8 1x4l_A Skeletal muscle LIM-pro 97.6 1.5E-05 5E-10 47.3 0.6 29 2-31 43-71 (72)
9 2d8y_A Eplin protein; LIM doma 97.6 1.1E-05 3.7E-10 50.2 -0.0 29 2-31 50-78 (91)
10 2cur_A Skeletal muscle LIM-pro 97.5 1.3E-05 4.4E-10 47.2 0.0 31 2-33 39-69 (69)
11 2dar_A PDZ and LIM domain prot 97.5 1.5E-05 5.1E-10 49.5 0.1 29 2-31 59-87 (90)
12 2d8z_A Four and A half LIM dom 97.5 1.6E-05 5.6E-10 46.7 0.2 30 2-32 39-68 (70)
13 1x68_A FHL5 protein; four-and- 97.5 6.3E-05 2.1E-09 45.1 2.8 29 2-31 43-71 (76)
14 1wyh_A SLIM 2, skeletal muscle 97.5 2E-05 6.9E-10 46.4 0.5 29 2-31 41-69 (72)
15 1g47_A Pinch protein; LIM doma 97.5 1.8E-05 6.2E-10 47.2 0.2 28 2-30 47-74 (77)
16 1b8t_A Protein (CRP1); LIM dom 97.5 2.9E-05 9.9E-10 54.0 1.2 34 2-36 150-183 (192)
17 1x4k_A Skeletal muscle LIM-pro 97.4 2.5E-05 8.6E-10 46.0 0.4 29 2-31 41-69 (72)
18 1b8t_A Protein (CRP1); LIM dom 97.4 3.4E-05 1.2E-09 53.7 0.9 34 2-36 42-75 (192)
19 2dj7_A Actin-binding LIM prote 97.4 5.2E-05 1.8E-09 46.6 1.4 28 2-31 50-77 (80)
20 2ehe_A Four and A half LIM dom 97.3 0.0001 3.5E-09 44.5 2.2 28 2-30 51-78 (82)
21 1j2o_A FLIN2, fusion of rhombo 97.3 3.1E-05 1.1E-09 50.1 -0.4 33 2-35 38-72 (114)
22 2cuq_A Four and A half LIM dom 97.2 6.5E-05 2.2E-09 45.1 0.1 29 2-31 49-77 (80)
23 1rut_X Flinc4, fusion protein 97.1 0.00019 6.6E-09 49.8 2.2 35 2-37 105-140 (188)
24 2cup_A Skeletal muscle LIM-pro 97.1 0.00013 4.5E-09 45.4 1.2 34 2-36 41-74 (101)
25 1x3h_A Leupaxin; paxillin fami 97.1 7.3E-05 2.5E-09 44.9 -0.2 28 2-30 49-76 (80)
26 2d8x_A Protein pinch; LIM doma 97.1 9.1E-05 3.1E-09 43.6 0.2 29 2-31 39-67 (70)
27 2l3k_A Rhombotin-2, linker, LI 97.0 9.6E-05 3.3E-09 48.3 -0.2 32 2-35 44-76 (123)
28 2cor_A Pinch protein; LIM doma 96.9 0.0002 6.8E-09 43.6 0.7 27 2-30 49-75 (79)
29 3f6q_B LIM and senescent cell 96.8 0.00018 6.2E-09 41.8 -0.0 26 2-28 47-72 (72)
30 2xqn_T Testin, TESS; metal-bin 96.8 0.00022 7.5E-09 46.1 0.4 30 2-32 38-67 (126)
31 2dlo_A Thyroid receptor-intera 96.7 0.00024 8.4E-09 42.9 -0.1 28 2-30 49-77 (81)
32 1m3v_A FLIN4, fusion of the LI 96.6 0.0003 1E-08 45.8 0.0 33 2-35 40-74 (122)
33 2co8_A NEDD9 interacting prote 96.4 0.0012 4.3E-08 40.3 1.7 27 2-29 50-78 (82)
34 2xjy_A Rhombotin-2; oncoprotei 96.3 0.00051 1.7E-08 44.5 -0.5 29 2-31 102-131 (131)
35 2jtn_A LIM domain-binding prot 96.0 0.0015 5.1E-08 44.9 0.5 33 2-36 95-127 (182)
36 2xjy_A Rhombotin-2; oncoprotei 95.5 0.0023 8E-08 41.3 -0.0 29 2-31 37-67 (131)
37 2rgt_A Fusion of LIM/homeobox 95.4 0.0023 7.8E-08 43.5 -0.3 33 2-36 41-73 (169)
38 2iyb_E Testin, TESS, TES; LIM 95.4 0.0036 1.2E-07 36.5 0.5 26 2-27 40-65 (65)
39 1x6a_A LIMK-2, LIM domain kina 95.2 0.0034 1.1E-07 37.6 -0.0 29 2-31 49-79 (81)
40 1x61_A Thyroid receptor intera 94.9 0.0035 1.2E-07 36.7 -0.6 27 2-29 41-67 (72)
41 2ehe_A Four and A half LIM dom 94.7 0.01 3.5E-07 35.5 1.2 22 13-35 1-22 (82)
42 1rut_X Flinc4, fusion protein 94.5 0.004 1.4E-07 43.0 -1.1 28 2-30 40-69 (188)
43 1wig_A KIAA1808 protein; LIM d 94.3 0.017 5.8E-07 34.4 1.6 28 2-30 39-67 (73)
44 2cuq_A Four and A half LIM dom 93.1 0.029 1E-06 33.2 1.1 22 13-35 1-22 (80)
45 1x3h_A Leupaxin; paxillin fami 92.5 0.041 1.4E-06 32.6 1.2 22 13-35 1-22 (80)
46 2egq_A FHL1 protein; LIM domai 92.3 0.044 1.5E-06 32.2 1.1 18 13-31 1-18 (77)
47 1v6g_A Actin binding LIM prote 91.2 0.056 1.9E-06 32.2 0.7 29 2-31 49-78 (81)
48 1x6a_A LIMK-2, LIM domain kina 90.2 0.098 3.3E-06 31.0 1.2 21 14-35 2-22 (81)
49 1x63_A Skeletal muscle LIM-pro 88.6 0.15 5.1E-06 30.2 1.1 22 13-35 1-22 (82)
50 2dlo_A Thyroid receptor-intera 85.3 0.3 1E-05 28.9 1.2 21 13-35 2-22 (81)
51 1v6g_A Actin binding LIM prote 84.9 0.3 1E-05 28.9 1.0 22 14-36 2-23 (81)
52 2rgt_A Fusion of LIM/homeobox 84.5 0.028 9.7E-07 38.0 -4.1 27 2-29 101-129 (169)
53 1m3v_A FLIN4, fusion of the LI 80.9 0.64 2.2E-05 29.8 1.5 29 3-32 91-119 (122)
54 1j2o_A FLIN2, fusion of rhombo 76.9 0.86 2.9E-05 28.8 1.1 28 4-32 84-111 (114)
55 2do5_A Splicing factor 3B subu 42.8 10 0.00034 23.0 1.3 17 53-69 24-42 (58)
56 1vf5_D Rieske iron-sulfur prot 31.9 17 0.00057 24.8 1.2 19 13-33 121-139 (179)
57 2cia_A Cytoplasmic protein NCK 31.9 40 0.0014 20.5 2.9 22 47-68 2-24 (102)
58 3cx5_E Cytochrome B-C1 complex 30.7 20 0.0007 24.8 1.5 17 14-32 144-160 (185)
59 2nwf_A Ubiquinol-cytochrome C 26.6 27 0.00092 23.2 1.5 16 14-31 99-114 (141)
60 2lz1_A Nuclear factor erythroi 24.2 24 0.00082 23.0 0.8 21 50-70 33-57 (90)
61 3tkz_A Tyrosine-protein phosph 23.9 68 0.0023 19.5 2.9 21 49-69 6-27 (109)
62 2qjy_C Ubiquinol-cytochrome C 22.6 35 0.0012 23.6 1.5 16 14-31 145-160 (187)
63 2gsb_A RAS GTPase-activating p 22.3 1.1E+02 0.0036 19.2 3.7 24 46-69 12-36 (119)
64 1d4t_A T cell signal transduct 20.8 94 0.0032 18.6 3.1 20 49-68 3-23 (104)
65 2jo6_A Nitrite reductase [NAD( 20.4 45 0.0015 20.4 1.5 28 4-33 57-87 (113)
66 2kk6_A Proto-oncogene tyrosine 20.3 49 0.0017 21.0 1.7 23 44-66 11-34 (116)
No 1
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=98.35 E-value=7.8e-08 Score=58.65 Aligned_cols=36 Identities=28% Similarity=0.697 Sum_probs=24.0
Q ss_pred ccccccccceecCeeeecCCccccccCCccccCCccc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRV 38 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~~~ 38 (85)
+.|+.+.+.++++++|| +.||.++|+|+++|.|..+
T Consensus 42 ~~L~~~~~~~~~~~~yC-~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 42 KNLDSTTVAIHDAEVYC-KSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp CEECSSCCEEETTEEEC-SHHHHHHCC----------
T ss_pred CCCCCCCeEeeCCEEEC-HHHHHHHhCCcccccCCcc
Confidence 56888889999999999 7999999999999998644
No 2
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=98.16 E-value=7.3e-07 Score=53.68 Aligned_cols=40 Identities=48% Similarity=0.951 Sum_probs=34.6
Q ss_pred ccccccccceecCeeeecC-CccccccCCccccCCccceeeee
Q psy16163 2 TVTNTSVTYTHKGVPYCHV-PCYGALFGPQLFGHGTRVESHTS 43 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k-~CY~klFGPkG~G~G~~~~sh~~ 43 (85)
+.|+.+.+.+++++||| + +||.++|||++.|-|+ +.++++
T Consensus 35 ~~L~~~~~~~~~g~~yC-~~~cy~~~f~~~C~~C~~-~~~~~~ 75 (76)
T 1iml_A 35 KTLTSGGHAEHEGKPYC-NHPCYSAMFGPKGFGRGG-AESHTF 75 (76)
T ss_dssp CBCCTTTEEEETTEEEE-TTTHHHHHSSCCCSSCCC-SSSCCC
T ss_pred ccCCCCceECcCCeEee-CHHHHHHHhCccCCCcCC-ceeeee
Confidence 56888889999999999 7 7999999999999987 666653
No 3
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.03 E-value=1.5e-06 Score=52.25 Aligned_cols=31 Identities=32% Similarity=0.729 Sum_probs=27.8
Q ss_pred ccccccccceecCeeeecC-CccccccCCcccc
Q psy16163 2 TVTNTSVTYTHKGVPYCHV-PCYGALFGPQLFG 33 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k-~CY~klFGPkG~G 33 (85)
+.|+...+.+++++||| + +||.++|||+++|
T Consensus 44 ~~L~~~~~~~~~g~~yC-~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 44 KTLTPGGHAEHDGKPFC-HKPCYATLFGSGPSS 75 (76)
T ss_dssp CBCCTTSCEEETTEEEC-TTTHHHHHSCSSCSC
T ss_pred CccCCCceEeECCEEec-chHHHHHhcccccCC
Confidence 56888889999999999 7 7999999999875
No 4
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=97.92 E-value=1.8e-06 Score=53.58 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=27.8
Q ss_pred ccccccccceecCeeeecCCccccccCCcccc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFG 33 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G 33 (85)
+.|+.+.+.++++++|| +.||.++|+|+|.|
T Consensus 59 ~~L~~~~~~~~~g~~yC-~~~y~~~f~p~~~g 89 (89)
T 1x64_A 59 LNLKQKGYFFVEGELYC-ETHARARTSGPSSG 89 (89)
T ss_dssp CCTTTSCCEEETTEEEC-HHHHHHHSSSCCCC
T ss_pred CCCCCCCeEeECCEEEC-HHHHHHHhCCCCCC
Confidence 56788889999999999 79999999999975
No 5
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.85 E-value=1e-06 Score=53.63 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=26.9
Q ss_pred ccccccccceecCeeeecCCccccccCCcccc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFG 33 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G 33 (85)
+.|+...+.++++++|| +.||.++|+|+|.|
T Consensus 49 ~~L~~~~~~~~~g~~yC-~~cy~~~~~p~g~g 79 (79)
T 1x62_A 49 TNLKQKGHFFVEDQIYC-EKHARERVSGPSSG 79 (79)
T ss_dssp CCHHHHCCEESSSCEEC-HHHHHHHHSSCCCC
T ss_pred CCCCCCCeEeECCEEEC-HHHHHHHhCCCCCC
Confidence 45666778899999999 79999999999865
No 6
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=97.70 E-value=6.3e-06 Score=48.17 Aligned_cols=28 Identities=32% Similarity=0.587 Sum_probs=25.4
Q ss_pred ccccccccceecCeeeecCCccccccCCc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQ 30 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPk 30 (85)
+.|+...+.++++++|| +.||.++||||
T Consensus 39 ~~L~~~~~~~~~g~~yC-~~~y~~~f~~k 66 (66)
T 1nyp_A 39 KPFLGHRHYERKGLAYC-ETHYNQLFGDV 66 (66)
T ss_dssp CBCSSSCCEEETTEEEC-HHHHHHHCSCC
T ss_pred CCCCCCceEeECCcEEC-HHHHHHHhCCC
Confidence 46888889999999999 79999999997
No 7
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.61 E-value=9.8e-06 Score=49.01 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=26.5
Q ss_pred ccccccccceecCeeeecCCccccccCCcc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL 31 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG 31 (85)
+.|+.+.+.+++++||| +.||.++|||+|
T Consensus 51 ~~L~~~~~~~~~~~~yC-~~cy~~~f~~~~ 79 (82)
T 1x63_A 51 QVIGTGSFFPKGEDFYC-VTCHETKFASGP 79 (82)
T ss_dssp CCCTTSCEEEETTEEEE-HHHHHHHTSCCC
T ss_pred CccCCCccEeeCCEEEC-HHHHHHHhCCCC
Confidence 56888889999999999 799999999997
No 8
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.56 E-value=1.5e-05 Score=47.28 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=25.8
Q ss_pred ccccccccceecCeeeecCCccccccCCcc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL 31 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG 31 (85)
+.|+...+.+++++||| +.||.++|||+.
T Consensus 43 ~~L~~~~f~~~~g~~yC-~~c~~~~~~p~~ 71 (72)
T 1x4l_A 43 LSLVGRGFLTERDDILC-PDCGKDISGPSS 71 (72)
T ss_dssp CBCTTSCCEECSSSEEC-HHHHHTCCCSSC
T ss_pred CcCCCCccEeECCEEEC-hhHcCcccCCCC
Confidence 46787888999999999 699999999985
No 9
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.55 E-value=1.1e-05 Score=50.17 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=26.6
Q ss_pred ccccccccceecCeeeecCCccccccCCcc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL 31 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG 31 (85)
+.|+.+.+.++++++|| +.||.++|+|++
T Consensus 50 ~~L~~~~~~~~~g~~yC-~~~y~~~f~~kc 78 (91)
T 2d8y_A 50 NKLSLGTYASLHGRIYC-KPHFNQLFKSKG 78 (91)
T ss_dssp CBCCTTTCCCSSSCCCC-HHHHHHHSCCCS
T ss_pred CCCCCCCcEeECCEEEC-HHHHHHHhCCCc
Confidence 56888889999999999 799999999998
No 10
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.52 E-value=1.3e-05 Score=47.18 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=27.1
Q ss_pred ccccccccceecCeeeecCCccccccCCcccc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFG 33 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G 33 (85)
+.|+...+.+++++||| +.||.++|||+--|
T Consensus 39 ~~L~~~~~~~~~~~~yC-~~cy~~~f~~~C~g 69 (69)
T 2cur_A 39 KKLAGQRFTAVEDQYYC-VDCYKNFVSGPSSG 69 (69)
T ss_dssp CBCTTSCEEECSSCEEE-HHHHHHHHTCSCCC
T ss_pred CCCCCCccEeECCEEEC-HHHhHHHhcCCCCC
Confidence 56787788999999999 79999999999654
No 11
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.51 E-value=1.5e-05 Score=49.46 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=26.2
Q ss_pred ccccccccceecCeeeecCCccccccCCcc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL 31 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG 31 (85)
+.|+...+.+++++||| +.||.++|||++
T Consensus 59 ~~L~~~~f~~~~g~~yC-~~cy~~~f~~~c 87 (90)
T 2dar_A 59 NTMAYIGFVEEKGALYC-ELCYEKFFASGP 87 (90)
T ss_dssp CBCSSSCBEESSSCEEC-HHHHHHHTSCCC
T ss_pred CCCCCCEeEeECCEEEC-HHHHHHHcCCCC
Confidence 56888889999999999 799999999996
No 12
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.49 E-value=1.6e-05 Score=46.71 Aligned_cols=30 Identities=13% Similarity=0.355 Sum_probs=26.8
Q ss_pred ccccccccceecCeeeecCCccccccCCccc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLF 32 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~ 32 (85)
+.|+...+.+++++||| +.||.++|+|+.-
T Consensus 39 ~~L~~~~~~~~~~~~yC-~~cy~~~f~~~c~ 68 (70)
T 2d8z_A 39 KQLSGQRFTARDDFAYC-LNCFCDLYASGPS 68 (70)
T ss_dssp CBCTTSCCEESSSSEEC-HHHHHHHTCCCCT
T ss_pred CcCCcCceEeeCCeEEC-HHHHHHHhccccC
Confidence 56888889999999999 7999999999974
No 13
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.49 E-value=6.3e-05 Score=45.15 Aligned_cols=29 Identities=10% Similarity=0.040 Sum_probs=25.9
Q ss_pred ccccccccceecCeeeecCCccccccCCcc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL 31 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG 31 (85)
+.|+...+.+++++||| +.||.++|||+=
T Consensus 43 ~~L~~~~f~~~~g~~yC-~~cy~~~f~~~C 71 (76)
T 1x68_A 43 VSLVGKGFLTQNKEIFC-QKCGSGMDTDIS 71 (76)
T ss_dssp CBCSSSCEEEETTEEEE-TTTTCCCCCCSS
T ss_pred CcCCCCceEeECCEEEC-HHHhhhhhCCcC
Confidence 56787789999999999 799999999984
No 14
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.48 E-value=2e-05 Score=46.42 Aligned_cols=29 Identities=31% Similarity=0.628 Sum_probs=26.2
Q ss_pred ccccccccceecCeeeecCCccccccCCcc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL 31 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG 31 (85)
+.|+.+.+.+++++||| +.||.++|||+.
T Consensus 41 ~~L~~~~~~~~~~~~yC-~~cy~~~f~~~C 69 (72)
T 1wyh_A 41 QPLGSRSFVPDKGAHYC-VPCYENKFASGP 69 (72)
T ss_dssp CBTTTSCEEEETTEEEE-HHHHHHHTSCCC
T ss_pred CcCCCCccCCcCCeEEC-HHHHHHHccCcC
Confidence 56888889999999999 799999999996
No 15
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.47 E-value=1.8e-05 Score=47.16 Aligned_cols=28 Identities=25% Similarity=0.492 Sum_probs=25.5
Q ss_pred ccccccccceecCeeeecCCccccccCCc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQ 30 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPk 30 (85)
+.|+.+.+.+++|++|| +.||.++|||+
T Consensus 47 ~~L~~~~~~~~~g~~yC-~~~y~~~f~~~ 74 (77)
T 1g47_A 47 QQFPEGLFYEFEGRKYC-EHDFQMLFAPC 74 (77)
T ss_dssp CCCGGGCSEEETTEEEC-HHHHHHHCCCC
T ss_pred CCCCCCCeEeECCeEeC-HHHHHHHhhcc
Confidence 56888889999999999 79999999997
No 16
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=97.46 E-value=2.9e-05 Score=54.01 Aligned_cols=34 Identities=32% Similarity=0.708 Sum_probs=30.8
Q ss_pred ccccccccceecCeeeecCCccccccCCccccCCc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGT 36 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~ 36 (85)
+.|+.+.+.+++++||| +.||.++|||+++|.|.
T Consensus 150 ~~L~~~~~~~~~g~~yC-~~cy~~~f~~kc~~C~~ 183 (192)
T 1b8t_A 150 KSLESTTLADKDGEIYC-KGCYAKNFGPKGFGFGQ 183 (192)
T ss_dssp CBCCSSSEEEETTEEEE-HHHHHHHTCCCCCCCCC
T ss_pred CCCCCCcccccCCEEeC-HHHHHHhcCCcCCCCCC
Confidence 56888889999999999 79999999999998875
No 17
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.42 E-value=2.5e-05 Score=46.00 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=25.9
Q ss_pred ccccccccceecCeeeecCCccccccCCcc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL 31 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG 31 (85)
+.|+.+.+.+++++||| +.||.++|+|+-
T Consensus 41 ~~L~~~~~~~~~~~~yC-~~cy~~~f~~~C 69 (72)
T 1x4k_A 41 QPIGTKSFIPKDNQNFC-VPCYEKQHASGP 69 (72)
T ss_dssp CCCCSSSEEEETTEEEE-HHHHHHHTSSCC
T ss_pred CccCCCccCccCCeEEC-HHHHhHHhCCCC
Confidence 56888889999999999 799999999973
No 18
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=97.40 E-value=3.4e-05 Score=53.65 Aligned_cols=34 Identities=29% Similarity=0.665 Sum_probs=30.5
Q ss_pred ccccccccceecCeeeecCCccccccCCccccCCc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGT 36 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~ 36 (85)
+.|+.+.+.++++++|| +.||.++|+|+++|.|.
T Consensus 42 ~~L~~~~~~~~~g~~yC-~~cy~~~f~~~c~~c~~ 75 (192)
T 1b8t_A 42 KNLDSTTVAVHGDEIYC-KSCYGKKYGPKGKGKGM 75 (192)
T ss_dssp CBCCSSSEEEETTEEEE-HHHHHHHHSCCCCCCCC
T ss_pred CcCCCCeeEecCCEeeC-hhhhHhhcCcccccccc
Confidence 56888889999999999 79999999999988775
No 19
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.37 E-value=5.2e-05 Score=46.57 Aligned_cols=28 Identities=32% Similarity=0.606 Sum_probs=24.7
Q ss_pred ccccccccceecCeeeecCCccccccCCcc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL 31 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG 31 (85)
+.|+ +.+.+++++||| +.||.++|||+.
T Consensus 50 ~~L~-~~~~~~~g~~yC-~~~y~~~fg~~C 77 (80)
T 2dj7_A 50 VILT-GEYISKDGVPYC-ESDYHAQFGSGP 77 (80)
T ss_dssp CBCS-SCCEEETTEEEC-TTHHHHHTTCCS
T ss_pred CCcC-CCeEEECCEEEC-HHHHHHHcCCCC
Confidence 4676 578999999999 799999999996
No 20
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.31 E-value=0.0001 Score=44.52 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=25.3
Q ss_pred ccccccccceecCeeeecCCccccccCCc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQ 30 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPk 30 (85)
+.|+...+.+++++||| +.||.++|||+
T Consensus 51 ~~L~~~~f~~~~~~~~C-~~c~~~~~~~~ 78 (82)
T 2ehe_A 51 RSLADEPFTCQDSELLC-NDCYCSAFSSG 78 (82)
T ss_dssp CBCSSCCEEEETTEEEE-TTTSSCCGGGS
T ss_pred CccCCCccEeeCCEEEC-HHHHhhhcCCC
Confidence 56787888999999999 79999999997
No 21
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=97.28 E-value=3.1e-05 Score=50.05 Aligned_cols=33 Identities=18% Similarity=0.057 Sum_probs=27.8
Q ss_pred ccccc--cccceecCeeeecCCccccccCCccccCC
Q psy16163 2 TVTNT--SVTYTHKGVPYCHVPCYGALFGPQLFGHG 35 (85)
Q Consensus 2 K~Lds--g~~aehdgk~YC~k~CY~klFGPkG~G~G 35 (85)
+.|+. ..+.+++++||| +.||.++|||++.+..
T Consensus 38 ~~L~~~g~~~~~~~g~~yC-~~~y~~~f~~~c~~c~ 72 (114)
T 1j2o_A 38 CRLGEVGRRLYYKLGRKLC-RRDYLRLGGSGGHMGS 72 (114)
T ss_dssp SCCCCSSSCCCCBTTBCCC-HHHHHHHHTSCCSSCB
T ss_pred CchhcCCCeeEEECCeeec-hHHHHHHhCcccCcCC
Confidence 45764 378999999999 7999999999987664
No 22
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.16 E-value=6.5e-05 Score=45.13 Aligned_cols=29 Identities=31% Similarity=0.620 Sum_probs=25.7
Q ss_pred ccccccccceecCeeeecCCccccccCCcc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL 31 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG 31 (85)
+.|+...+.+++++||| +.||.++|||+-
T Consensus 49 ~~L~~~~~~~~~~~~yC-~~cy~~~f~~~c 77 (80)
T 2cuq_A 49 TPLAGQQFTSRDEDPYC-VACFGELFASGP 77 (80)
T ss_dssp CBCTTCCEEECSSSEEE-HHHHHHHTTCST
T ss_pred CcCCCCeeEeECCEEEC-HHHHHHHcCCCC
Confidence 56777789999999999 799999999984
No 23
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=97.11 E-value=0.00019 Score=49.77 Aligned_cols=35 Identities=9% Similarity=-0.029 Sum_probs=22.0
Q ss_pred cccccc-ccceecCeeeecCCccccccCCccccCCcc
Q psy16163 2 TVTNTS-VTYTHKGVPYCHVPCYGALFGPQLFGHGTR 37 (85)
Q Consensus 2 K~Ldsg-~~aehdgk~YC~k~CY~klFGPkG~G~G~~ 37 (85)
+.|+++ .+.++++++|| +.||.++|+|+++++|+.
T Consensus 105 ~~L~~g~~f~~~~g~~yC-~~c~~~~~~~~~~~~g~~ 140 (188)
T 1rut_X 105 NRLVPGDRFHYINGSLFC-EHDRPTALINGHLNSGGS 140 (188)
T ss_dssp CBCCTTCEEEEETTEEEE-GGGCCTTTC---------
T ss_pred CCCCCCCeEEEECCeEEC-HHHHHHHhcccccccCCC
Confidence 457654 47899999999 799999999999999863
No 24
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=97.10 E-value=0.00013 Score=45.35 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=29.4
Q ss_pred ccccccccceecCeeeecCCccccccCCccccCCc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGT 36 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~ 36 (85)
+.|+...+.++++++|| +.||.++|+|+..+=+.
T Consensus 41 ~~L~~~~~~~~~g~~yC-~~cy~~~~~~~C~~C~~ 74 (101)
T 2cup_A 41 HPLANETFVAKDNKILC-NKCTTREDSPKCKGCFK 74 (101)
T ss_dssp CCTTSSCCEEETTEEEC-HHHHTTCCCCBCSSSCC
T ss_pred CCCCcCeeECcCCEEEC-hhHhhhhcCCccccCCC
Confidence 56777789999999999 79999999999876654
No 25
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.08 E-value=7.3e-05 Score=44.89 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=25.5
Q ss_pred ccccccccceecCeeeecCCccccccCCc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQ 30 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPk 30 (85)
+.|+.+.+.+++++||| +.||.++|||+
T Consensus 49 ~~L~~~~~~~~~~~~yC-~~~y~~~f~~~ 76 (80)
T 1x3h_A 49 TSFSTGSFFELDGRPFC-ELHYHHRRGSG 76 (80)
T ss_dssp CBSCSSCCEESSSCEEC-HHHHHHHHSSS
T ss_pred CCCCCCcEEeECCEEEC-HHHHHHHcCCC
Confidence 56888889999999999 79999999997
No 26
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.07 E-value=9.1e-05 Score=43.55 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=25.9
Q ss_pred ccccccccceecCeeeecCCccccccCCcc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQL 31 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG 31 (85)
+.|+.+.+.++++++|| +.||.++|+|+.
T Consensus 39 ~~L~~~~f~~~~g~~yC-~~c~~~~~~~~~ 67 (70)
T 2d8x_A 39 EVLADIGFVKNAGRHLC-RPCHNREKASGP 67 (70)
T ss_dssp CBCSSSCCEEETTEEEC-HHHHHHHHCCCS
T ss_pred CcCCCCccEeECCeEEC-HHHhhhhcCCCC
Confidence 56888889999999999 799999999974
No 27
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=97.00 E-value=9.6e-05 Score=48.31 Aligned_cols=32 Identities=9% Similarity=-0.116 Sum_probs=26.4
Q ss_pred cccccc-ccceecCeeeecCCccccccCCccccCC
Q psy16163 2 TVTNTS-VTYTHKGVPYCHVPCYGALFGPQLFGHG 35 (85)
Q Consensus 2 K~Ldsg-~~aehdgk~YC~k~CY~klFGPkG~G~G 35 (85)
+.|.++ .+.+++++||| +.||.++|+|++ |++
T Consensus 44 ~~L~~g~~f~~~~g~~yC-~~cy~~~~~~~~-~~~ 76 (123)
T 2l3k_A 44 KHFSVGDRYLLINSDIVC-EQDIYEWTKING-GSG 76 (123)
T ss_dssp CBCCTTCEEEECSSSEEE-GGGHHHHHHHHT-CCC
T ss_pred CCCCCCCcEEeeCCEEEc-HHHhHHHhcccc-CCC
Confidence 467555 58899999999 799999999997 544
No 28
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=96.91 E-value=0.0002 Score=43.62 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=23.0
Q ss_pred ccccccccceecCeeeecCCccccccCCc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQ 30 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPk 30 (85)
+.|+...+ +++++||| +.||.++|+|.
T Consensus 49 ~~L~~~~f-~~~g~~yC-~~cy~~~f~p~ 75 (79)
T 2cor_A 49 KELTADAR-ELKGELYC-LPCHDKMGVSG 75 (79)
T ss_dssp CBCCTTCE-EETTEEEC-HHHHHTTSCCS
T ss_pred CccCCCCE-eECCEEeC-HHHHHHhCCCC
Confidence 46776655 89999999 79999999996
No 29
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=96.83 E-value=0.00018 Score=41.75 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=23.1
Q ss_pred ccccccccceecCeeeecCCccccccC
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFG 28 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFG 28 (85)
+.|+.+.+.+++|+||| +.||.++||
T Consensus 47 ~~L~~~~~~~~~g~~yC-~~~y~~lf~ 72 (72)
T 3f6q_B 47 QQFPEGLFYEFEGRKYC-EHDFQMLFA 72 (72)
T ss_dssp CCCGGGCCEEETTEEEC-HHHHHHHTC
T ss_pred CCCCCCCeEeECCeEeC-HHHHHHhhC
Confidence 46788888999999999 799999997
No 30
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=96.82 E-value=0.00022 Score=46.06 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=26.3
Q ss_pred ccccccccceecCeeeecCCccccccCCccc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLF 32 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~ 32 (85)
+.|+...+.++||+||| +.||.++|+|+=-
T Consensus 38 ~~L~~~~f~~~~g~~yC-~~cy~~~~~~~C~ 67 (126)
T 2xqn_T 38 SILAGEIYVMVNDKPVC-KPCYVKNHAVVCQ 67 (126)
T ss_dssp CBCTTSEEEEETTEEEE-HHHHHHHSCCBCT
T ss_pred CCCCcCEEEeECCEEec-hHHhCcCcCccCc
Confidence 56887789999999999 7999999999843
No 31
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=96.70 E-value=0.00024 Score=42.86 Aligned_cols=28 Identities=7% Similarity=0.026 Sum_probs=23.0
Q ss_pred cccccccccee-cCeeeecCCccccccCCc
Q psy16163 2 TVTNTSVTYTH-KGVPYCHVPCYGALFGPQ 30 (85)
Q Consensus 2 K~Ldsg~~aeh-dgk~YC~k~CY~klFGPk 30 (85)
+.|+...+... +++||| +.||.++|||+
T Consensus 49 ~~L~~~~f~~~~~g~~yC-~~cy~~~f~~~ 77 (81)
T 2dlo_A 49 RGLDGIPFTVDATSQIHC-IEDFHRKFASG 77 (81)
T ss_dssp CBCTTSCEECCTTCCCEE-HHHHHHHTTSS
T ss_pred CccCCCeeEECCCCEEEC-HHHHHHHhcCc
Confidence 46776666655 799999 79999999997
No 32
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=96.64 E-value=0.0003 Score=45.82 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=26.1
Q ss_pred cccc--ccccceecCeeeecCCccccccCCccccCC
Q psy16163 2 TVTN--TSVTYTHKGVPYCHVPCYGALFGPQLFGHG 35 (85)
Q Consensus 2 K~Ld--sg~~aehdgk~YC~k~CY~klFGPkG~G~G 35 (85)
+.|+ ...+.+++++||| +.||.++|+|+|...+
T Consensus 40 ~~L~~~~~~~~~~~g~~yC-~~cy~~~f~~~~~C~~ 74 (122)
T 1m3v_A 40 AQLGDIGTSSYTKSGMILC-RNDYIRLFGNSGAGGS 74 (122)
T ss_dssp CCTTTSEECCEEETTEEEC-HHHHHHHHCCCCSSSC
T ss_pred CcccccCCeEEEECCeeec-HHHHHHHcCCCCcccc
Confidence 3464 2468899999999 7999999999765544
No 33
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=96.39 E-value=0.0012 Score=40.26 Aligned_cols=27 Identities=11% Similarity=-0.009 Sum_probs=23.1
Q ss_pred ccccccccc--eecCeeeecCCccccccCC
Q psy16163 2 TVTNTSVTY--THKGVPYCHVPCYGALFGP 29 (85)
Q Consensus 2 K~Ldsg~~a--ehdgk~YC~k~CY~klFGP 29 (85)
+.|+.+.+. ++|+++|| +.||.++|.+
T Consensus 50 ~~L~~~~~~~~~~~g~~yC-~~~y~~~~~~ 78 (82)
T 2co8_A 50 ATLWPGGYEQHPGDGHFYC-LQHLPQTDSG 78 (82)
T ss_dssp CBCCTTSEECCTTTCCCEE-TTTCCCCCCC
T ss_pred CCcCCCceeEeCcCCEEEC-hHHHHhhhcC
Confidence 568888877 57999999 7999999976
No 34
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=96.31 E-value=0.00051 Score=44.47 Aligned_cols=29 Identities=3% Similarity=-0.308 Sum_probs=24.2
Q ss_pred cccccc-ccceecCeeeecCCccccccCCcc
Q psy16163 2 TVTNTS-VTYTHKGVPYCHVPCYGALFGPQL 31 (85)
Q Consensus 2 K~Ldsg-~~aehdgk~YC~k~CY~klFGPkG 31 (85)
+.|+++ .+.+++++||| +.||.++|+|+|
T Consensus 102 ~~L~~g~~f~~~~~~~~C-~~c~~~~~~~~~ 131 (131)
T 2xjy_A 102 KHFCVGDRYLLINSDIVC-EQDIYEWTKING 131 (131)
T ss_dssp CBCCTTCEEEEETTEEEE-GGGHHHHHHHHC
T ss_pred CCCCCCCEEEEECCEEEc-HHHHHHHhhccC
Confidence 456544 48889999999 799999999987
No 35
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=95.96 E-value=0.0015 Score=44.93 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=27.1
Q ss_pred ccccccccceecCeeeecCCccccccCCccccCCc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGT 36 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~ 36 (85)
+.|+...+ +++|+||| +.||.++|+|+..+=+.
T Consensus 95 ~~L~~~~f-~~~g~~yC-~~~y~~~f~~kC~~C~~ 127 (182)
T 2jtn_A 95 VPLAERCF-SRGESVYC-KDDFFKRFGTKCAACQL 127 (182)
T ss_dssp CCCSSCCE-EETTEEEC-HHHHHHTTSCCCTTTCC
T ss_pred CccCCCce-eECCEeee-cCccccccccccccCCC
Confidence 45776665 79999999 79999999999876554
No 36
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=95.50 E-value=0.0023 Score=41.28 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=23.7
Q ss_pred ccccc--cccceecCeeeecCCccccccCCcc
Q psy16163 2 TVTNT--SVTYTHKGVPYCHVPCYGALFGPQL 31 (85)
Q Consensus 2 K~Lds--g~~aehdgk~YC~k~CY~klFGPkG 31 (85)
+.|+. ..+.+++|+||| +.||.++|+|++
T Consensus 37 ~~L~~~~~~~~~~~g~~yC-~~~y~~~~~~~~ 67 (131)
T 2xjy_A 37 CRLGEVGRRLYYKLGRKLC-RRDYLRLFGQDG 67 (131)
T ss_dssp CBCSSTTCCEEEETTEEEC-HHHHHHHHCCCE
T ss_pred CccccCCCeEEEECCEEee-cCchhhhCCCcc
Confidence 35653 468899999999 799999999943
No 37
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=95.40 E-value=0.0023 Score=43.52 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=26.5
Q ss_pred ccccccccceecCeeeecCCccccccCCccccCCc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGT 36 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGPkG~G~G~ 36 (85)
+.|+...+ ++||+||| +.||.++|||+-.+=+.
T Consensus 41 ~~L~~~~f-~~~g~~yC-~~~y~~~f~~~C~~C~~ 73 (169)
T 2rgt_A 41 VPLAERCF-SRGESVYC-KDDFFKRFGTKCAACQL 73 (169)
T ss_dssp CBCCSCCE-ESSSCEEC-HHHHHHHHSCBCTTTCC
T ss_pred CcCCCCCc-ccCCeeee-ccccccccccccccccc
Confidence 45776664 79999999 79999999999775443
No 38
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=95.36 E-value=0.0036 Score=36.45 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=21.6
Q ss_pred ccccccccceecCeeeecCCcccccc
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALF 27 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klF 27 (85)
+.|+...+.+++++|||.+.||.+++
T Consensus 40 ~~L~~~~f~~~~g~~yC~~~C~~k~~ 65 (65)
T 2iyb_E 40 KCLIGQKFMPVEGMVFCSVECKKRMS 65 (65)
T ss_dssp CBCTTSCCEEETTEEESSHHHHHTTC
T ss_pred CcCCCCceEEECCEEecCHHHhhhhC
Confidence 46777889999999999558998864
No 39
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=95.19 E-value=0.0034 Score=37.62 Aligned_cols=29 Identities=10% Similarity=0.269 Sum_probs=22.8
Q ss_pred cccccc-ccc-eecCeeeecCCccccccCCcc
Q psy16163 2 TVTNTS-VTY-THKGVPYCHVPCYGALFGPQL 31 (85)
Q Consensus 2 K~Ldsg-~~a-ehdgk~YC~k~CY~klFGPkG 31 (85)
+.|+.+ .+. +++++||| +.||.++|+++-
T Consensus 49 ~~L~~g~~f~~~~~~~~~C-~~c~~~~~~~~~ 79 (81)
T 1x6a_A 49 VIIEDGDAYALVQHATLYC-GKCHNEVVSGPS 79 (81)
T ss_dssp CBCCTTSCEEECSSSCEEE-HHHHHHHHCTTS
T ss_pred CccCCCCcEEEeeCCEEEC-HHHHHHHhcCCC
Confidence 457553 455 68999999 799999999874
No 40
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.89 E-value=0.0035 Score=36.69 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=22.7
Q ss_pred ccccccccceecCeeeecCCccccccCC
Q psy16163 2 TVTNTSVTYTHKGVPYCHVPCYGALFGP 29 (85)
Q Consensus 2 K~Ldsg~~aehdgk~YC~k~CY~klFGP 29 (85)
+.|+...+.+++++||| +.||.++|..
T Consensus 41 ~~L~~~~~~~~~~~~yC-~~cy~~~~~~ 67 (72)
T 1x61_A 41 AQLRGQHFYAVERRAYC-EGCYVATLES 67 (72)
T ss_dssp CBCTTSCEEESSSCEEE-HHHHHHHHHT
T ss_pred CcCCcCcCEeeCCeEEC-HHHHHHHHcc
Confidence 56777778999999999 7999999853
No 41
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.67 E-value=0.01 Score=35.52 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=17.9
Q ss_pred cCeeeecCCccccccCCccccCC
Q psy16163 13 KGVPYCHVPCYGALFGPQLFGHG 35 (85)
Q Consensus 13 dgk~YC~k~CY~klFGPkG~G~G 35 (85)
+|+||| +.||.++|+|+=-+=+
T Consensus 1 ~g~~yC-~~~y~~~~~~~C~~C~ 22 (82)
T 2ehe_A 1 GSSGSS-GPCYDNTFANTCAECQ 22 (82)
T ss_dssp CCCCCC-CCCCCCCCSCBCTTTC
T ss_pred CCceec-hhHhCcccCCcCccCC
Confidence 689999 7999999999754433
No 42
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=94.49 E-value=0.004 Score=43.05 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=23.6
Q ss_pred ccccc--cccceecCeeeecCCccccccCCc
Q psy16163 2 TVTNT--SVTYTHKGVPYCHVPCYGALFGPQ 30 (85)
Q Consensus 2 K~Lds--g~~aehdgk~YC~k~CY~klFGPk 30 (85)
+.|+. ..+.+++++||| +.||.++|+|+
T Consensus 40 ~~L~~~g~~~~~~~g~~yC-~~cy~~~~~~~ 69 (188)
T 1rut_X 40 AQLGDIGTSSYTKSGMILC-RNDYIRLFGNS 69 (188)
T ss_dssp CBHHHHCSEEEEETTEEEC-HHHHHHHHSCC
T ss_pred cccccCCceEEEeCCcccc-ccccccccccC
Confidence 35665 478899999999 79999999995
No 43
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.35 E-value=0.017 Score=34.36 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=22.6
Q ss_pred cccc-ccccceecCeeeecCCccccccCCc
Q psy16163 2 TVTN-TSVTYTHKGVPYCHVPCYGALFGPQ 30 (85)
Q Consensus 2 K~Ld-sg~~aehdgk~YC~k~CY~klFGPk 30 (85)
+.|+ ...+.+++++||| +.||.++|..+
T Consensus 39 ~~L~~~~~f~~~~~~~yC-~~C~~~~~~~~ 67 (73)
T 1wig_A 39 QMFAEGEEMYLQGSSIWH-PACRQAARTED 67 (73)
T ss_dssp CCCCSSCCCEEETTEEEC-TTHHHHTSSSS
T ss_pred CCCCCCCeeEeeCCEEEC-hHHChHhhccc
Confidence 4566 4568889999999 79999998764
No 44
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=93.12 E-value=0.029 Score=33.22 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=17.9
Q ss_pred cCeeeecCCccccccCCccccCC
Q psy16163 13 KGVPYCHVPCYGALFGPQLFGHG 35 (85)
Q Consensus 13 dgk~YC~k~CY~klFGPkG~G~G 35 (85)
+|+||| +.||.++|+|+=.+=+
T Consensus 1 gg~~yC-~~cy~~~~~~~C~~C~ 22 (80)
T 2cuq_A 1 GSSGSS-GPCYENKFAPRCARCS 22 (80)
T ss_dssp CCCCSC-CCCCCCCSSCCCTTTC
T ss_pred CCcEEc-HHHHccccCCcCCCCC
Confidence 589999 7999999999854444
No 45
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=92.52 E-value=0.041 Score=32.57 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=17.6
Q ss_pred cCeeeecCCccccccCCccccCC
Q psy16163 13 KGVPYCHVPCYGALFGPQLFGHG 35 (85)
Q Consensus 13 dgk~YC~k~CY~klFGPkG~G~G 35 (85)
+++||| +.||.++|+|+=.+=+
T Consensus 1 gg~~yC-~~~y~~~~~~~C~~C~ 22 (80)
T 1x3h_A 1 GSSGSS-GKDFLAMFSPKCGGCN 22 (80)
T ss_dssp CCCCCC-CCCCCCCCSCBCTTTC
T ss_pred CCCccc-hhHHhhhcCCccccCC
Confidence 478999 7999999999754433
No 46
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=92.28 E-value=0.044 Score=32.20 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=15.5
Q ss_pred cCeeeecCCccccccCCcc
Q psy16163 13 KGVPYCHVPCYGALFGPQL 31 (85)
Q Consensus 13 dgk~YC~k~CY~klFGPkG 31 (85)
.++||| +.||.++|+|+=
T Consensus 1 g~~~yC-~~cy~~~~~~~C 18 (77)
T 2egq_A 1 GSSGSS-GDCYKNFVAKKC 18 (77)
T ss_dssp CCSSCC-TTCCCSCCCCCC
T ss_pred CCCeEc-hhHhchhhCccC
Confidence 368999 799999999874
No 47
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=91.24 E-value=0.056 Score=32.21 Aligned_cols=29 Identities=14% Similarity=0.032 Sum_probs=22.6
Q ss_pred ccccccccceecCe-eeecCCccccccCCcc
Q psy16163 2 TVTNTSVTYTHKGV-PYCHVPCYGALFGPQL 31 (85)
Q Consensus 2 K~Ldsg~~aehdgk-~YC~k~CY~klFGPkG 31 (85)
+.|+.+.....+++ +|| +.||.++++-.|
T Consensus 49 ~~L~~~~~~~~~~~~~~C-~~C~~~~~~~~~ 78 (81)
T 1v6g_A 49 LPFPPGDRVTFNGKECMC-QKCSLPVSVSGP 78 (81)
T ss_dssp CCCCSSSCEEEETTEEEE-HHHHSCCSSCCC
T ss_pred CCCCCCCEEEeCCCCEEC-hhhhcccCCCCC
Confidence 46777777777775 699 799999998765
No 48
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=90.23 E-value=0.098 Score=31.02 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=16.8
Q ss_pred CeeeecCCccccccCCccccCC
Q psy16163 14 GVPYCHVPCYGALFGPQLFGHG 35 (85)
Q Consensus 14 gk~YC~k~CY~klFGPkG~G~G 35 (85)
+.||| +.||.++|+|+=.+=+
T Consensus 2 ~~~yC-~~~y~~~~~~~C~~C~ 22 (81)
T 1x6a_A 2 SSGSS-GKDYWGKFGEFCHGCS 22 (81)
T ss_dssp CCCCC-CCCSSCCSSCBCTTTC
T ss_pred CCccc-hhHHhhhcCCcCccCC
Confidence 57999 7999999999754333
No 49
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=88.59 E-value=0.15 Score=30.18 Aligned_cols=22 Identities=14% Similarity=-0.052 Sum_probs=17.3
Q ss_pred cCeeeecCCccccccCCccccCC
Q psy16163 13 KGVPYCHVPCYGALFGPQLFGHG 35 (85)
Q Consensus 13 dgk~YC~k~CY~klFGPkG~G~G 35 (85)
++.||| +.||.++|+|+=-+=+
T Consensus 1 ~~~~yC-~~cy~~~~~~~C~~C~ 22 (82)
T 1x63_A 1 GSSGSS-GKCTTREDSPKCKGCF 22 (82)
T ss_dssp CCSCCC-CCCCSCCCSCBCSSSC
T ss_pred CCCcCc-hhHHccccCCcCccCC
Confidence 367999 7999999998754433
No 50
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=85.33 E-value=0.3 Score=28.93 Aligned_cols=21 Identities=10% Similarity=-0.099 Sum_probs=16.1
Q ss_pred cCeeeecCCccccccCCccccCC
Q psy16163 13 KGVPYCHVPCYGALFGPQLFGHG 35 (85)
Q Consensus 13 dgk~YC~k~CY~klFGPkG~G~G 35 (85)
||+||| +.||. +|+|+=-+=+
T Consensus 2 ~g~~yC-~~~y~-~~~~~C~~C~ 22 (81)
T 2dlo_A 2 SSGSSG-EGCYV-ATLEKCATCS 22 (81)
T ss_dssp CCCCCC-CCCCC-SSCCBCTTTC
T ss_pred cCCEEC-HHHhh-cCCCccccCC
Confidence 789999 79999 7888744333
No 51
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=84.95 E-value=0.3 Score=28.93 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=17.0
Q ss_pred CeeeecCCccccccCCccccCCc
Q psy16163 14 GVPYCHVPCYGALFGPQLFGHGT 36 (85)
Q Consensus 14 gk~YC~k~CY~klFGPkG~G~G~ 36 (85)
+-+|| +.||.++|+|+=.+=+.
T Consensus 2 ~~~yC-~~dy~~~~~~~C~~C~~ 23 (81)
T 1v6g_A 2 SSGSS-GLDYQRLYGTRCFSCDQ 23 (81)
T ss_dssp CCCCC-CSCGGGSCCCBCTTTCC
T ss_pred CCCcc-hHHHHhHhCCcCccccC
Confidence 45899 79999999997544443
No 52
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=84.53 E-value=0.028 Score=38.01 Aligned_cols=27 Identities=11% Similarity=-0.028 Sum_probs=20.4
Q ss_pred ccccccc--cceecCeeeecCCccccccCC
Q psy16163 2 TVTNTSV--TYTHKGVPYCHVPCYGALFGP 29 (85)
Q Consensus 2 K~Ldsg~--~aehdgk~YC~k~CY~klFGP 29 (85)
+.|.+|. ...+++++|| +.||.+++..
T Consensus 101 ~~L~~g~~f~~~~~g~~~C-~~c~~~~~~~ 129 (169)
T 2rgt_A 101 RQLATGDEFYLMEDSRLVC-KADYETAKQG 129 (169)
T ss_dssp CBCCTTCEEEECTTSCEEE-HHHHHHHHHC
T ss_pred CCCCCCCceEEccCCeEEC-HHHHHHHhhc
Confidence 4566554 2567999999 7999999865
No 53
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=80.93 E-value=0.64 Score=29.79 Aligned_cols=29 Identities=0% Similarity=-0.365 Sum_probs=23.6
Q ss_pred cccccccceecCeeeecCCccccccCCccc
Q psy16163 3 VTNTSVTYTHKGVPYCHVPCYGALFGPQLF 32 (85)
Q Consensus 3 ~Ldsg~~aehdgk~YC~k~CY~klFGPkG~ 32 (85)
.|.-..+..++++||| +.||.+.+-.+|.
T Consensus 91 ~l~g~~f~~~~~~~yC-~~~~~~~~~~~g~ 119 (122)
T 1m3v_A 91 TLMGGEFGDEDERLIT-RLENTQFDAANGI 119 (122)
T ss_dssp SCCSCTTCCTTCCCCE-ECTTTTTTCCSCC
T ss_pred CCCCCccEecCCEeEc-cCcchhchhhcCC
Confidence 3555678889999999 7999999987763
No 54
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=76.90 E-value=0.86 Score=28.83 Aligned_cols=28 Identities=0% Similarity=-0.378 Sum_probs=22.7
Q ss_pred ccccccceecCeeeecCCccccccCCccc
Q psy16163 4 TNTSVTYTHKGVPYCHVPCYGALFGPQLF 32 (85)
Q Consensus 4 Ldsg~~aehdgk~YC~k~CY~klFGPkG~ 32 (85)
|.-..+..++++||| +.||.+.+.+.|.
T Consensus 84 ~~g~~f~~~~~~~~C-~~~~~~~~~~~g~ 111 (114)
T 1j2o_A 84 LMGGEFGDEDERLIT-RLENTQFDAANGI 111 (114)
T ss_dssp TTSSBCCCSSSCCCE-EEECTTCCCTTSS
T ss_pred CCCCeeEEcCCEeec-chhhhccccccCC
Confidence 344468889999999 7999999988763
No 55
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.75 E-value=10 Score=22.96 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=13.4
Q ss_pred CCCCC--hhHHHHHhhhhh
Q psy16163 53 GSNMP--RSHLESKLNLYN 69 (85)
Q Consensus 53 ~~~i~--r~~l~s~LktYN 69 (85)
|.+|- |+||+..||+|-
T Consensus 24 GAPi~g~REElvdRLk~Y~ 42 (58)
T 2do5_A 24 GAPIQGNREELVERLQSYT 42 (58)
T ss_dssp TCCCCSCHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHh
Confidence 33444 999999999993
No 56
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=31.89 E-value=17 Score=24.82 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=15.7
Q ss_pred cCeeeecCCccccccCCcccc
Q psy16163 13 KGVPYCHVPCYGALFGPQLFG 33 (85)
Q Consensus 13 dgk~YC~k~CY~klFGPkG~G 33 (85)
++.+.| +||+..|.+.|--
T Consensus 121 ~~~~~C--P~Hgs~Fd~~G~~ 139 (179)
T 1vf5_D 121 ENKFKC--PCHGSQYDETGRV 139 (179)
T ss_dssp SSSEEC--TTTCCEECSSSCC
T ss_pred CCEEEC--CCCCCEECCCCcE
Confidence 567999 8999999987643
No 57
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*
Probab=31.85 E-value=40 Score=20.47 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=15.3
Q ss_pred cccCCCCC-CCChhHHHHHhhhh
Q psy16163 47 VENKPCGS-NMPRSHLESKLNLY 68 (85)
Q Consensus 47 ~~~~~~~~-~i~r~~l~s~LktY 68 (85)
|+..||.- .|+|++-+.+|+..
T Consensus 2 p~~~~Wyhg~isR~~Ae~lL~~~ 24 (102)
T 2cia_A 2 PLGSEWYYGNVTRHQAECALNER 24 (102)
T ss_dssp ---CTTBCCSCCHHHHHHHHHHH
T ss_pred CcCCccccCCCCHHHHHHHHhhC
Confidence 45566643 89999999999754
No 58
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=30.72 E-value=20 Score=24.84 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=14.8
Q ss_pred CeeeecCCccccccCCccc
Q psy16163 14 GVPYCHVPCYGALFGPQLF 32 (85)
Q Consensus 14 gk~YC~k~CY~klFGPkG~ 32 (85)
+.++| |||+..|.+.|-
T Consensus 144 ~~~~C--PcHGs~FD~~G~ 160 (185)
T 3cx5_E 144 GGWFC--PCHGSHYDISGR 160 (185)
T ss_dssp TEEEE--TTTTEEECTTCC
T ss_pred CEEEc--CCCCCEECCCCC
Confidence 67999 899999999664
No 59
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=26.65 E-value=27 Score=23.23 Aligned_cols=16 Identities=31% Similarity=0.773 Sum_probs=14.1
Q ss_pred CeeeecCCccccccCCcc
Q psy16163 14 GVPYCHVPCYGALFGPQL 31 (85)
Q Consensus 14 gk~YC~k~CY~klFGPkG 31 (85)
+.++| +||+..|...|
T Consensus 99 ~~~~C--P~Hgs~Fd~~G 114 (141)
T 2nwf_A 99 GGWFC--PCHGSHWDSAG 114 (141)
T ss_dssp TEEEE--TTTTEEECTTS
T ss_pred CEEEc--CCCCCEECCCC
Confidence 67999 89999999965
No 60
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.18 E-value=24 Score=23.04 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=17.8
Q ss_pred CCCCC----CCChhHHHHHhhhhhe
Q psy16163 50 KPCGS----NMPRSHLESKLNLYNQ 70 (85)
Q Consensus 50 ~~~~~----~i~r~~l~s~LktYN~ 70 (85)
.||.- ++|++||..+|++|.+
T Consensus 33 LPFsvdqIvnLpv~eFn~lL~~~~L 57 (90)
T 2lz1_A 33 IPFPVEKIINLPVVDFNEMMSKEQF 57 (90)
T ss_dssp CSSCHHHHHHSCHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHCCHHHHHHHHHHcCC
Confidence 48854 8999999999999864
No 61
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=23.91 E-value=68 Score=19.47 Aligned_cols=21 Identities=14% Similarity=0.021 Sum_probs=15.9
Q ss_pred cCCCC-CCCChhHHHHHhhhhh
Q psy16163 49 NKPCG-SNMPRSHLESKLNLYN 69 (85)
Q Consensus 49 ~~~~~-~~i~r~~l~s~LktYN 69 (85)
..||. ..|+|.+-+.+|+..+
T Consensus 6 ~~~Wyhg~isr~~Ae~lL~~~~ 27 (109)
T 3tkz_A 6 SRRWFHPNITGVEAENLLLTRG 27 (109)
T ss_dssp -CCSBCTTCCHHHHHHHHHHHC
T ss_pred cCCceecCCCHHHHHHHHhcCC
Confidence 45563 3899999999999764
No 62
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=22.65 E-value=35 Score=23.61 Aligned_cols=16 Identities=31% Similarity=0.804 Sum_probs=14.1
Q ss_pred CeeeecCCccccccCCcc
Q psy16163 14 GVPYCHVPCYGALFGPQL 31 (85)
Q Consensus 14 gk~YC~k~CY~klFGPkG 31 (85)
+.++| +||+-.|-+.|
T Consensus 145 ~~~~C--P~Hg~~Fd~~G 160 (187)
T 2qjy_C 145 GGWFC--PCHGSHYDSAG 160 (187)
T ss_dssp TEEEE--TTTTEEECTTS
T ss_pred CEEEe--CCCCCEECCCC
Confidence 67999 89999999964
No 63
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.30 E-value=1.1e+02 Score=19.21 Aligned_cols=24 Identities=13% Similarity=-0.035 Sum_probs=18.4
Q ss_pred ccccCCCCC-CCChhHHHHHhhhhh
Q psy16163 46 KVENKPCGS-NMPRSHLESKLNLYN 69 (85)
Q Consensus 46 ~~~~~~~~~-~i~r~~l~s~LktYN 69 (85)
.....||.- .|+|.+-+.+|+...
T Consensus 12 ~l~~~~WyhG~isR~~Ae~lL~~~g 36 (119)
T 2gsb_A 12 PHEGKIWFHGKISKQEAYNLLMTVG 36 (119)
T ss_dssp SGGGCSSBCCSSCHHHHHHHHHHTC
T ss_pred ccccCCcccCCCCHHHHHHHHhhcC
Confidence 344567743 899999999999864
No 64
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=20.78 E-value=94 Score=18.63 Aligned_cols=20 Identities=15% Similarity=-0.039 Sum_probs=15.1
Q ss_pred cCCCCC-CCChhHHHHHhhhh
Q psy16163 49 NKPCGS-NMPRSHLESKLNLY 68 (85)
Q Consensus 49 ~~~~~~-~i~r~~l~s~LktY 68 (85)
..||.- .|+|++-+.+|+..
T Consensus 3 ~~~Wyhg~isR~~Ae~lL~~~ 23 (104)
T 1d4t_A 3 AVAVYHGKISRETGEKLLLAT 23 (104)
T ss_dssp TCTTBCCSCCHHHHHHHHHHH
T ss_pred CCceEccCCCHHHHHHHHHhc
Confidence 345532 89999999999864
No 65
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=20.40 E-value=45 Score=20.38 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=19.3
Q ss_pred ccccccceecC--eeeecCCccccccCC-cccc
Q psy16163 4 TNTSVTYTHKG--VPYCHVPCYGALFGP-QLFG 33 (85)
Q Consensus 4 Ldsg~~aehdg--k~YC~k~CY~klFGP-kG~G 33 (85)
|..|.+.+.++ .+.| |||+..|.. .|--
T Consensus 57 L~~G~~~~~~g~~~i~C--P~Hg~~Fd~~tG~~ 87 (113)
T 2jo6_A 57 LSRGLIAEHQGELWVAS--PLKKQRFRLSDGLC 87 (113)
T ss_dssp STTSEEEEETTEEEEEE--TTTTEEEETTTTEE
T ss_pred cCCeEEeccCCCcEEEC--CCCCCEEeCCCccC
Confidence 55555544445 6999 899999988 5543
No 66
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=20.34 E-value=49 Score=20.96 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=17.9
Q ss_pred ccccccCCCCC-CCChhHHHHHhh
Q psy16163 44 FGKVENKPCGS-NMPRSHLESKLN 66 (85)
Q Consensus 44 ~~~~~~~~~~~-~i~r~~l~s~Lk 66 (85)
.......||.- .|+|++-+.+|+
T Consensus 11 ~~~~~~~~WyhG~isR~eAe~lL~ 34 (116)
T 2kk6_A 11 MKPLAEQDWYHGAIPRIEAQELLK 34 (116)
T ss_dssp CCCTTTCTTEEESCCHHHHHHTCC
T ss_pred ccccccCCCccCCCCHHHHHHHhc
Confidence 44556667744 999999999998
Done!