RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16163
(85 letters)
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein,
LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 41.2 bits (97), Expect = 1e-06
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 10 YTHKGVPYCHVPCYGALFGPQLFGHGTRVESHT 42
H+G PYC+ PCY A+FGP+ FG G ESHT
Sbjct: 43 AEHEGKPYCNHPCYSAMFGPKGFGRG-GAESHT 74
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 33.1 bits (76), Expect = 0.001
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 12 HKGVPYCHVPCYGALFGP 29
H G P+CH PCY LFG
Sbjct: 54 HDGKPFCHKPCYATLFGS 71
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 33.1 bits (76), Expect = 0.002
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 10 YTHKGVPYCHVPCYGALFGPQLFGHG 35
H YC CYG +GP+ +G+G
Sbjct: 50 AIHDAEVYCK-SCYGKKYGPKGYGYG 74
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 32.7 bits (74), Expect = 0.007
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 10 YTHKGVPYCHVPCYGALFGPQLFGHG 35
G YC CY FGP+ FG G
Sbjct: 158 ADKDGEIYCK-GCYAKNFGPKGFGFG 182
Score = 31.1 bits (70), Expect = 0.021
Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 10 YTHKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFGKVENKPCGSNMPRSHLESKLNLYN 69
H YC CYG +GP+ G G + ++ +
Sbjct: 50 AVHGDEIYCK-SCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRM 108
Query: 70 QYYDGKS 76
G S
Sbjct: 109 AQKVGGS 115
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 30.3 bits (69), Expect = 0.015
Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 10 YTHKGVPYCHVPCYGALFGP 29
Y KG+ YC Y LFG
Sbjct: 47 YERKGLAYCE-THYNQLFGD 65
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 30.1 bits (68), Expect = 0.019
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 10 YTHKGVPYCHVPCYGALFGP 29
Y +G YC + LF P
Sbjct: 55 YEFEGRKYCE-HDFQMLFAP 73
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 28.1 bits (63), Expect = 0.14
Identities = 5/20 (25%), Positives = 7/20 (35%), Gaps = 1/20 (5%)
Query: 10 YTHKGVPYCHVPCYGALFGP 29
+ YC V C+ F
Sbjct: 59 FPKGEDFYC-VTCHETKFAS 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.17
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 20/59 (33%)
Query: 31 LFGHGTRVESHTSFGKV--------------ENKPCG----SNMPRSHLESKLNLYNQY 71
LF G R + ++ E P SN+ + ++ +N N +
Sbjct: 303 LFFIGVR--CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 27.3 bits (61), Expect = 0.19
Identities = 4/20 (20%), Positives = 6/20 (30%), Gaps = 1/20 (5%)
Query: 10 YTHKGVPYCHVPCYGALFGP 29
YC C+ L+
Sbjct: 47 TARDDFAYCL-NCFCDLYAS 65
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat,
ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 27.4 bits (61), Expect = 0.19
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 10 YTHKGVPYCHVPCYGALFG 28
Y +G YC + LF
Sbjct: 55 YEFEGRKYCE-HDFQMLFA 72
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 27.3 bits (61), Expect = 0.20
Identities = 8/20 (40%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 10 YTHKGVPYCHVPCYGALFGP 29
KG YC PCY F
Sbjct: 49 VPDKGAHYCV-PCYENKFAS 67
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 27.7 bits (62), Expect = 0.20
Identities = 5/20 (25%), Positives = 7/20 (35%), Gaps = 1/20 (5%)
Query: 10 YTHKGVPYCHVPCYGALFGP 29
+ G P+C Y G
Sbjct: 57 FELDGRPFCE-LHYHHRRGS 75
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 90
Score = 27.4 bits (61), Expect = 0.25
Identities = 7/20 (35%), Positives = 7/20 (35%), Gaps = 1/20 (5%)
Query: 10 YTHKGVPYCHVPCYGALFGP 29
KG YC CY F
Sbjct: 67 VEEKGALYCE-LCYEKFFAS 85
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 27.1 bits (60), Expect = 0.34
Identities = 6/20 (30%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 10 YTHKGVPYCHVPCYGALFGP 29
+ G YC P + LF
Sbjct: 58 ASLHGRIYCK-PHFNQLFKS 76
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 0.40
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 61 LESKLNLY 68
L++ L LY
Sbjct: 25 LQASLKLY 32
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 26.6 bits (59), Expect = 0.47
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 10 YTHKGVPYCHVPCYGALFGPQ 30
+ GVPYC Y A FG
Sbjct: 57 ISKDGVPYCE-SDYHAQFGSG 76
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains
protein 1, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 69
Score = 26.2 bits (58), Expect = 0.66
Identities = 4/20 (20%), Positives = 5/20 (25%), Gaps = 1/20 (5%)
Query: 10 YTHKGVPYCHVPCYGALFGP 29
+ YC CY
Sbjct: 47 TAVEDQYYCV-DCYKNFVSG 65
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 25.8 bits (57), Expect = 0.84
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 10 YTHKGVPYCHVPCYGALFGP 29
+ PYC C+G LF
Sbjct: 57 TSRDEDPYCV-ACFGELFAS 75
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 25.4 bits (56), Expect = 1.2
Identities = 4/20 (20%), Positives = 5/20 (25%), Gaps = 1/20 (5%)
Query: 10 YTHKGVPYCHVPCYGALFGP 29
+C PCY
Sbjct: 49 IPKDNQNFCV-PCYEKQHAS 67
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 24.4 bits (53), Expect = 4.0
Identities = 4/20 (20%), Positives = 6/20 (30%), Gaps = 1/20 (5%)
Query: 10 YTHKGVPYCHVPCYGALFGP 29
+ +G YC A
Sbjct: 67 FFVEGELYCE-THARARTSG 85
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 24.8 bits (54), Expect = 4.0
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 14 GVPYCHVPCYGALFGPQLFGHGTRVE 39
+C + +FG GTRV
Sbjct: 222 AKYFCALGESLTRADKLIFGKGTRVT 247
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 24.9 bits (55), Expect = 4.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 49 NKPCGSNMPRSHLE 62
+ PCGSN R H+E
Sbjct: 187 SNPCGSNFSRKHVE 200
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold,
toxin-immune system complex; 2.95A {Rattus norvegicus}
Length = 125
Score = 24.5 bits (54), Expect = 4.3
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 28 GPQLFGHGTRVESHTSFGKVENKP 51
G FG GTR+ +V+ +P
Sbjct: 102 GTLYFGAGTRLSVLYGSSRVDLQP 125
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 23.6 bits (51), Expect = 5.5
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 6 TSVTYTHKGVPYCHVPCYGALF 27
T+ KG YC PC+ +
Sbjct: 52 TADARELKGELYCL-PCHDKMG 72
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 24.0 bits (53), Expect = 7.7
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 14 GVPYCHVPC 22
GVP+C V C
Sbjct: 26 GVPFCQVHC 34
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 23.8 bits (52), Expect = 8.4
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 17 YCHVPCYGALFGPQLFGHGTRVE 39
C V +FG GT+V
Sbjct: 91 ICGVGDTIKEQFVYVFGGGTKVT 113
>1x61_A Thyroid receptor interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 23.2 bits (50), Expect = 8.6
Identities = 6/18 (33%), Positives = 7/18 (38%), Gaps = 1/18 (5%)
Query: 10 YTHKGVPYCHVPCYGALF 27
Y + YC CY A
Sbjct: 49 YAVERRAYCE-GCYVATL 65
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 23.2 bits (50), Expect = 8.9
Identities = 4/19 (21%), Positives = 6/19 (31%), Gaps = 1/19 (5%)
Query: 10 YTHKGVPYCHVPCYGALFG 28
+ G C PC+
Sbjct: 47 VKNAGRHLCR-PCHNREKA 64
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1,
LIM domain protein CLP-36, contractIle protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 79
Score = 23.2 bits (50), Expect = 9.7
Identities = 2/20 (10%), Positives = 4/20 (20%), Gaps = 1/20 (5%)
Query: 10 YTHKGVPYCHVPCYGALFGP 29
+ + YC
Sbjct: 57 FFVEDQIYCE-KHARERVSG 75
>3ury_A Exotoxin; structural genomics, center for structural genomics of
infec diseases, csgid, superantigen-like protein; 1.90A
{Staphylococcus aureus subsp}
Length = 193
Score = 23.8 bits (51), Expect = 9.9
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 58 RSHLESKLNLYNQYYDGK 75
R L K NLY GK
Sbjct: 135 RKQLIEKNNLYGNVGSGK 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.417
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,239,565
Number of extensions: 55532
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 37
Length of query: 85
Length of database: 6,701,793
Length adjustment: 53
Effective length of query: 32
Effective length of database: 5,221,980
Effective search space: 167103360
Effective search space used: 167103360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)