RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16163
(85 letters)
>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein,
CRP, CRIP {Rat (Rattus rattus) [TaxId: 10117]}
Length = 48
Score = 45.9 bits (109), Expect = 3e-09
Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 12 HKGVPYCHVPCYGALFGPQLFGHGTRVESHT 42
H+G PYC+ PCY A+FGP+ FG G ESHT
Sbjct: 17 HEGKPYCNHPCYSAMFGPKGFGRGG-AESHT 46
>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein,
CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 37.8 bits (88), Expect = 4e-06
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 12 HKGVPYCHVPCYGALFG 28
H G P+CH PCY LFG
Sbjct: 17 HDGKPFCHKPCYATLFG 33
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 36.2 bits (84), Expect = 2e-05
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 12 HKGVPYCHVPCYGALFGPQLFGHGTR--VESHT 42
G YC CY FGP+ FG G H+
Sbjct: 17 KDGEIYCK-GCYAKNFGPKGFGFGQGAGALIHS 48
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 34.8 bits (80), Expect = 8e-05
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 12 HKGVPYCHVPCYGALFGPQLFGHG 35
H YC CYG +GP+ G G
Sbjct: 17 HGDEIYCK-SCYGKKYGPKGKGKG 39
>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 112
Score = 27.1 bits (59), Expect = 0.18
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 1 MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
+T S +H C Q FG GTR+
Sbjct: 71 FPLTLESARPSHTSQYLCASSENIGTAYEQYFGPGTRLT 109
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 24.7 bits (54), Expect = 0.50
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 10 YTHKGVPYCHVPCYGALFGP 29
Y +G YC + LF P
Sbjct: 16 YEFEGRKYCE-HDFQMLFAP 34
>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 112
Score = 25.1 bits (54), Expect = 0.76
Identities = 10/39 (25%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 1 MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
T+ V C A Q FG GTR+
Sbjct: 73 STLKIQRTQQEDSAVYLCASSLGQA--YEQYFGPGTRLT 109
>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 113
Score = 25.2 bits (54), Expect = 0.80
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
+ +++ + C + FG GTR+
Sbjct: 73 EMNVSTLELGDSALYLCASSLADRVNTEAFFGQGTRLT 110
>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 115
Score = 25.2 bits (54), Expect = 0.80
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 6 TSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
S + +C V FG GTR+
Sbjct: 78 PSAHMSDAAEYFCAVSESPFGNEKLTFGTGTRLT 111
>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 114
Score = 24.0 bits (51), Expect = 2.2
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 1 MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRV 38
++ T+ + C V G+ G FG GT++
Sbjct: 72 SSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQL 109
>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 110
Score = 23.6 bits (50), Expect = 3.1
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 1 MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
T+ T V YC V + G +FG GT ++
Sbjct: 69 STLILPHATLRDTAVYYCIV-VRSSNTGKLIFGQGTTLQ 106
>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus
musculus), beta-chain [TaxId: 10090]}
Length = 113
Score = 23.6 bits (50), Expect = 3.2
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
+ +++ + +C Q FG GTR+
Sbjct: 75 EMNMSALELEDSAMYFCASSLRWG--DEQYFGPGTRLT 110
>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 113
Score = 23.4 bits (49), Expect = 3.4
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 1 MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRV 38
T+ + C V FG GT +
Sbjct: 72 STLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSL 109
>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 111
Score = 23.2 bits (49), Expect = 3.6
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 1 MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
+++ V +C +FG GTR+
Sbjct: 72 LSLHIVPSQPGDSAVYFCAAMEGA---QKLVFGQGTRLT 107
>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal
fragment {Mouse (Mus musculus) [TaxId: 10090]}
Length = 117
Score = 23.5 bits (50), Expect = 3.6
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 1 MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
+ +T + G+ C V G+GT++
Sbjct: 75 VNLTIQGLRAVDTGLYLCKVELMYPPPYFVGMGNGTQIY 113
>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda
variable domain, VL-lambda {Human (Homo sapiens),
cluster 4 [TaxId: 9606]}
Length = 112
Score = 23.6 bits (50), Expect = 3.7
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 1 MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
++T + + + YC Y +FG GT++
Sbjct: 73 ASLTISGLQAEDEADYYC--SSYDGSSTSVVFGGGTKLT 109
>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus),
alpha-chain [TaxId: 10090]}
Length = 113
Score = 23.2 bits (49), Expect = 3.8
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 1/33 (3%)
Query: 6 TSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRV 38
G +C +FG GT++
Sbjct: 76 RDAQLEDSGTYFCAAEASSG-SWQLIFGSGTQL 107
>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 23.5 bits (50), Expect = 3.9
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 1 MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
+T + ++G +C V ++ F V
Sbjct: 82 YVLTLNKFSKENEGYYFCSVISNSVMY----FSSVVPVL 116
>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus
musculus), alpha-chain [TaxId: 10090]}
Length = 115
Score = 23.3 bits (49), Expect = 3.9
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 1 MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
+ +S + + YC + + F +FG GT +
Sbjct: 73 FHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLS 111
>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 112
Score = 23.1 bits (49), Expect = 4.1
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 17 YCHVPCYGALFGPQLFGHGTRVE 39
Y Y G FG G+R+
Sbjct: 87 YFCASSYVGNTGELFFGEGSRLT 109
>d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin
oxidoreductase {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 409
Score = 23.4 bits (50), Expect = 4.5
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 10 YTHKGVPYCHVPCYGALFGPQLFGHGTRVESHTSFG 45
+G PYC++PC + + E+ G
Sbjct: 69 VQQRGCPYCNMPCGNVVLDAEGQESELDYENVALLG 104
>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal
fragment {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 23.1 bits (49), Expect = 4.6
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 1 MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
+ +T + G+ C V G+G ++
Sbjct: 75 VNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGAQIY 113
>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus),
alpha-chain [TaxId: 10090]}
Length = 115
Score = 22.9 bits (48), Expect = 6.6
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 16 PYCHVPCYGALFGPQLFGHGTRV 38
YG +FG GT +
Sbjct: 89 FCAMRGDYGGSGNKLIFGTGTLL 111
>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable
domain, VL-lambda {Human (Homo sapiens), cluster 2
[TaxId: 9606]}
Length = 114
Score = 22.8 bits (48), Expect = 6.8
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 6 TSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
+ + + YC + FG GT++
Sbjct: 77 SGLESEDEADYYCA--AWNDSLDEPGFGGGTKLT 108
>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus
musculus), beta-chain [TaxId: 10090]}
Length = 110
Score = 22.6 bits (48), Expect = 6.9
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 1 MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
++ S T + V +C G FG GTR+
Sbjct: 74 FSLILESATPSQTSVYFCASGGGG----TLYFGAGTRLS 108
>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa
variable domain, VL-kappa {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 119
Score = 22.5 bits (47), Expect = 7.2
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 6 TSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
+S+ +C+ FG GT++E
Sbjct: 76 SSLQPEDVATYFCYQYN-----NGYTFGAGTKLE 104
>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 114
Score = 22.5 bits (47), Expect = 8.4
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 1 MTVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
T T+ V +C + + +FG GTR++
Sbjct: 74 FNFTITASQVVDSAVYFCALSGFYN-TDKLIFGTGTRLQ 111
>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 111
Score = 22.4 bits (47), Expect = 9.4
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 2 TVTNTSVTYTHKGVPYCHVPCYGALFGPQLFGHGTRVE 39
T+ GV +C Q FG GTR+
Sbjct: 74 TLKVQPAELEDSGVYFCASSQDR---DTQYFGPGTRLT 108
>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable
domain, VL-kappa {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 106
Score = 22.3 bits (47), Expect = 9.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 22 CYGALFGPQLFGHGTRVE 39
C + GP FG GT++E
Sbjct: 87 CQQSWNGPLTFGAGTKLE 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.417
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 312,623
Number of extensions: 11552
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 59
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)