BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16164
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 83 DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
+AVT + Y+Y + L+KS L ALQ G +++CSEN ++ + ++A +G+ V+
Sbjct: 46 NAVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 143 SINPQYT 149
N YT
Sbjct: 106 PTNEIYT 112
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 83 DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
+AVT + Y+Y + L+KS L ALQ G +++CSEN ++ + ++A +G+ V+
Sbjct: 46 NAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 143 SINPQYT 149
N YT
Sbjct: 106 PTNEIYT 112
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 83 DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
+AVT + Y+Y + L+KS L ALQ G +++CSEN ++ + ++A +G+ V+
Sbjct: 46 NAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 143 SINPQYT 149
N YT
Sbjct: 106 PTNEIYT 112
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 83 DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
DA ++ TY + + S++LA+A+++ G + +CSEN L + + ++ A +G+ V+
Sbjct: 44 DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 103
Query: 143 SINPQYTE 150
N Y E
Sbjct: 104 PANDIYNE 111
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 83 DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
DA ++ TY + + S++LA+A+++ G + +CSEN L + + ++ A +G+ V+
Sbjct: 44 DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 103
Query: 143 SINPQYTE 150
N Y E
Sbjct: 104 PANDIYNE 111
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 83 DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
DA ++ TY + + S++LA+A+++ G + +CSEN L + + ++ A +G+ V+
Sbjct: 49 DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 108
Query: 143 SINPQYTE 150
N Y E
Sbjct: 109 PANDIYNE 116
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%)
Query: 83 DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
DA ++ TY + + + +LA+ +++ G +++CSEN L + + + A +G+ V+
Sbjct: 78 DAHAEVNITYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVA 137
Query: 143 SINPQYTE 150
N Y E
Sbjct: 138 PTNDIYNE 145
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%)
Query: 83 DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
DA ++ TY + + S++LA+A+++ G + + SEN L + + ++ A +G+ V+
Sbjct: 49 DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVA 108
Query: 143 SINPQYTE 150
N Y E
Sbjct: 109 PANDCYNE 116
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 94 DILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
+I + + +LA + ++G R+G+ V +C N +DY I A + T INP Y
Sbjct: 57 EICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXY 111
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 64 FIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSEN 123
+IFQ I L I+ T YTY D+ S Q+A K G + D+V + N
Sbjct: 66 YIFQNISEFATKPCL---INGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPN 122
Query: 124 RLDYPVLIVAASLLGITVSSINPQYT--EVVKE 154
++ + +AAS G T ++ NP +T E+ K+
Sbjct: 123 CPEFVLSFLAASFRGATATAANPFFTPAEIAKQ 155
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 82 IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
I+ YTY D+ + ++A L K G ++GD++ + + ++ + + AS G +
Sbjct: 42 INGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAII 101
Query: 142 SSINPQYTEVVKELSQHC 159
++ NP T EL++H
Sbjct: 102 TAANPFSTPA--ELAKHA 117
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 77 RLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASL 136
R F +D V T+ D L ++ +LA L + G GD V+I S+N + LI A +L
Sbjct: 22 RTAFMVDGVR---LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVAL 78
Query: 137 LGITVSSIN 145
+G + +N
Sbjct: 79 IGAILLPVN 87
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 70 QPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPV 129
Q V RL ++ TD+ TY + + + AD L G +GD V++ N +++
Sbjct: 24 QRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCC 83
Query: 130 LIVAASLLGITVSSIN 145
L A+ LG IN
Sbjct: 84 LFYGAAKLGAVAVPIN 99
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 70 QPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPV 129
Q V RL ++ TD+ TY + + + AD L G +GD V++ N +++
Sbjct: 10 QRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCC 69
Query: 130 LIVAASLLGITVSSIN 145
L A+ LG IN
Sbjct: 70 LFYGAAKLGAVAVPIN 85
>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
Enzyme Type 2 From Drosophila Melanogaster
Length = 613
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 4 VKLSNIVHGKFRYHRFNKQPTLLNITLSGVVVHTVDSGSGAV 45
V SNI+HG+ + PT + +G V +D GSGAV
Sbjct: 390 VDFSNILHGEQYLEIVDDLPTSGTLLTNGKVFDVMDKGSGAV 431
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 5 KLSNIVHGKFRYHRFNKQPT----LLNITLSGVVVHTVDSGSGA-VAQLKSVFATCCMIS 59
+L+N++ FRY + L + + V HT+D+ + A K+V M++
Sbjct: 368 ELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMT 427
Query: 60 GLILFIFQYIQPNVVHYRLLFQIDAVTDI----TYTYDDILQKSLQLADALQK-RGYRRG 114
I+ YI P H + + +DA + T+ D +K+ +A +L + Y
Sbjct: 428 PQNARIW-YISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPELNPYIPD 486
Query: 115 DIVSICSENRLDYPVLIVAASLLGI 139
D I SE + D+P LIV S L +
Sbjct: 487 DFSLIKSEKKYDHPELIVDESNLRV 511
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 34/62 (54%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
T +Y ++ +++ ++A LQK G +G +V++ ++ L+ + I+ G ++P+
Sbjct: 489 TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKL 548
Query: 149 TE 150
E
Sbjct: 549 PE 550
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,515,646
Number of Sequences: 62578
Number of extensions: 200279
Number of successful extensions: 631
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 21
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)