RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16164
(214 letters)
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 76.1 bits (188), Expect = 3e-16
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 81 QIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGIT 140
IDA T T+ D+L+K+L+LA L+K G ++GD+V++ S N +++P + + G
Sbjct: 2 LIDADTGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGI 61
Query: 141 VSSINPQYTE 150
VS+ NP YT
Sbjct: 62 VSAANPSYTP 71
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 65.4 bits (160), Expect = 2e-12
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 82 IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
IDA T TY ++ + +LA L RG R+GD+V + S N L++PV+ +A G V
Sbjct: 25 IDAATGRALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVV 84
Query: 142 SSINPQYT--EVVKELS 156
++ NP YT E+ K++
Sbjct: 85 TTANPLYTPAEIAKQVK 101
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 63.9 bits (156), Expect = 4e-12
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE 150
TY ++ +++ +LA AL+ G GD V+I N ++ V I+A G ++P
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 63.2 bits (154), Expect = 7e-12
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 82 IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
I TY ++ +++ +LA ALQ G + GD V+I N ++ + +AA G
Sbjct: 31 IFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVA 90
Query: 142 SSINPQYTE 150
+NP+ T
Sbjct: 91 VPLNPRLTP 99
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 61.4 bits (150), Expect = 4e-11
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
TY ++ + S + A LQ+ G ++GD V++ N +P+ G V +NP
Sbjct: 22 GRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNP 81
Query: 147 QYTE 150
YT
Sbjct: 82 LYTP 85
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 58.0 bits (141), Expect = 4e-10
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
D +Y + + + A AL+ G ++GD+V++ ENR +Y + +A + LG + IN
Sbjct: 1 DRRLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINT 60
Query: 147 QYTEVVKELSQHCVGGLE 164
+ L+ HC+ +
Sbjct: 61 TQRG--EVLA-HCINVSD 75
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 53.0 bits (128), Expect = 3e-08
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
YTY ++ ++ +LA L G R GD V++ +N ++ A + LG IN
Sbjct: 1 GRRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINT 60
Query: 147 QY 148
Sbjct: 61 AL 62
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 51.0 bits (123), Expect = 1e-07
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
+ T+ ++ Q+ QLA+ L G RRGD V++ ++N +++ +L +A LG V +NP+
Sbjct: 1 SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRL 60
Query: 149 TEVVKELSQHCVGGLELQQKRVEIGALAEETNSLL 183
+ ELQQ+ ++ + +++
Sbjct: 61 PQE------------ELQQQLADLQPDLDRPATII 83
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 50.7 bits (122), Expect = 1e-07
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
+ TY ++ +S +LA AL G GD V++ + +Y VL +A G +NP Y
Sbjct: 11 SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSY 70
Query: 149 TEVVKELSQHCVG 161
EL+ + +
Sbjct: 71 PA--AELA-YILS 80
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 50.8 bits (122), Expect = 1e-07
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT 149
TY ++ + S LA LQ RG +G V+I N L YPV I A G V ++NP YT
Sbjct: 50 TYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYT 108
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 49.9 bits (120), Expect = 3e-07
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
D + +Y ++ ++ + A RG +GD+V++ ENR +Y + + LG V+ +N
Sbjct: 60 DQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLN- 118
Query: 147 QYTEVVKELSQHCVG 161
T+ + H +
Sbjct: 119 --TQQRGAVLAHSLN 131
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 49.5 bits (119), Expect = 3e-07
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
TY ++ + +LA AL + G R GD+V+ N ++ V+ +A + +G ++ I P Y
Sbjct: 1 RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIY 60
Query: 149 TEVVKELS 156
E +EL
Sbjct: 61 RE--RELG 66
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 48.1 bits (115), Expect = 1e-06
Identities = 17/69 (24%), Positives = 37/69 (53%)
Query: 78 LLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLL 137
++F + TY D+ ++ +LA+AL+ G +GD V+I N + + ++A + +
Sbjct: 29 IIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARI 88
Query: 138 GITVSSINP 146
G + ++P
Sbjct: 89 GAIPAVVSP 97
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 47.7 bits (114), Expect = 1e-06
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 82 IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
ID T YTY D+ S ++A L K G R+GD+V + N ++ + + AS G
Sbjct: 43 IDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVT 102
Query: 142 SSINPQYT--EVVKELS 156
++ NP YT E+ K+
Sbjct: 103 TTANPFYTPAEIAKQAK 119
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 47.4 bits (113), Expect = 2e-06
Identities = 19/59 (32%), Positives = 38/59 (64%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN 145
D +T+ ++ + S ++A+ Q +GYR GD+V++ ENRL++ L + + +G+ + IN
Sbjct: 1 DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALIN 59
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 46.2 bits (110), Expect = 4e-06
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 23/106 (21%)
Query: 82 IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
I A T TY ++ ++S +LA + G +RGD V+I EN L Y + AA G+
Sbjct: 17 IMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY 76
Query: 142 SSINPQYT-----------------------EVVKELSQHCVGGLE 164
+ +N T +V + L + C G
Sbjct: 77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRH 122
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 45.9 bits (109), Expect = 7e-06
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
D + ++ +LA L +G RRGD V++ N +++ VL +A + LG TV ++N
Sbjct: 33 DRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNT 92
Query: 147 QY 148
+Y
Sbjct: 93 RY 94
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 44.8 bits (107), Expect = 1e-05
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 84 AVT--DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGI 139
A+ D + TY ++ +++ +LA L+ RG GD+V++ E + L+VA +L I
Sbjct: 5 ALVYGDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPE---LVVA--ILAI 57
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 44.4 bits (106), Expect = 2e-05
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
T T+ ++ ++ +LA L G + GD V+I +ENR ++ + +A G I P
Sbjct: 5 TITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTS 64
Query: 149 TE 150
+
Sbjct: 65 SP 66
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 43.8 bits (104), Expect = 3e-05
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE 150
TY + L++ +A AL G + I S N +++ +L +AA G+ V+ ++P Y+
Sbjct: 27 TYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYSL 86
Query: 151 VVKELS--QHCV 160
+ K+ + +H
Sbjct: 87 LSKDFAKLRHIF 98
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 43.0 bits (102), Expect = 5e-05
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 82 IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
I A + TY ++ +S +LA L+ G R GD+V+I EN ++ + AA G+
Sbjct: 4 IMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYY 63
Query: 142 SSIN 145
+ IN
Sbjct: 64 TPIN 67
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 43.0 bits (102), Expect = 5e-05
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT 149
TY ++ + + A AL G +GD V+I + N + + + A G V +N +YT
Sbjct: 32 TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT 90
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 42.9 bits (102), Expect = 6e-05
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 88 ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQ 147
TY + L++ +A AL RG + I S N +++ +L +AA G+ + ++P
Sbjct: 68 RRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPA 127
Query: 148 YTEVVKELS--QHCVG 161
Y+ V ++ +H +
Sbjct: 128 YSLVSQDFGKLRHVLE 143
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 42.3 bits (100), Expect = 8e-05
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
+ + TY ++ + + A+ L+ G GD V + + + +A G ++NP
Sbjct: 8 EQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNP 67
Query: 147 QYTEVVKELSQ 157
T ++L
Sbjct: 68 LLTP--QDLEH 76
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 42.4 bits (100), Expect = 8e-05
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE 150
T+ D+ ++ LA AL+ +G R G V++ +N ++ +L+ A LLG ++ +N + TE
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 42.3 bits (100), Expect = 1e-04
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 88 ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQ 147
TY ++ ++ LA L G GD V+I + NR ++ + +A LG I
Sbjct: 44 EAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYST 103
Query: 148 YTE 150
T
Sbjct: 104 STP 106
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 41.1 bits (96), Expect = 2e-04
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 82 IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
++AVT TY ++++ + + A AL+ G R+G +V + N +Y ++ + G
Sbjct: 48 VEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVF 107
Query: 142 SSINPQYTEVVKELSQH 158
S NP T + E+ +
Sbjct: 108 SGANP--TALESEIKKQ 122
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 40.0 bits (94), Expect = 4e-04
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
TY ++L+ +LA LQ++G R+GD V++ +N + + A G V +NP
Sbjct: 1 VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60
Query: 149 TE 150
E
Sbjct: 61 RE 62
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 40.1 bits (95), Expect = 5e-04
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 84 AVT--DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGI 139
AV D + TY ++ +++ +LA L+ RG GD+V+IC E + ++VA +L +
Sbjct: 5 AVVFGDQSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPE---MVVA--ILAV 57
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 40.1 bits (94), Expect = 5e-04
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
+ YT+ + +LA L G + GD V I + N ++ + A + +G + +INP
Sbjct: 43 ALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINP 102
Query: 147 QY 148
Y
Sbjct: 103 AY 104
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 39.9 bits (94), Expect = 6e-04
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENR 124
D YTY + + +LA AL K G +GD+V++ + N
Sbjct: 27 DRRYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNT 64
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 39.9 bits (93), Expect = 7e-04
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 85 VTD--ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
VT I +Y D+ + LA L + G GD V++ + ++ V ++AAS + V
Sbjct: 37 VTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVV 96
Query: 143 SINP 146
++P
Sbjct: 97 PLDP 100
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 39.5 bits (93), Expect = 8e-04
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
D TY ++ +++ +LA L +G GD V I + NR++Y ++ A ++N
Sbjct: 26 DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNY 85
Query: 147 QYTE 150
+Y E
Sbjct: 86 RYVE 89
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 38.4 bits (89), Expect = 0.002
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 86 TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN 145
TY ++ ++ +LA L G G+ V+I ++ L+ V ++A G ++
Sbjct: 249 GGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLD 308
Query: 146 PQY 148
P Y
Sbjct: 309 PLY 311
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 38.5 bits (90), Expect = 0.002
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
++TY I + S LA L K G +RGD+V I + +D V ++ G T S I+P Y
Sbjct: 270 SFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAY 329
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 38.0 bits (89), Expect = 0.002
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 85 VTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSI 144
V T TY ++ +++ +LA L G R GD V++ D I+A G +
Sbjct: 12 VGGDTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGAAYVPL 71
Query: 145 NPQYT 149
+P
Sbjct: 72 DPSQP 76
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 37.9 bits (88), Expect = 0.003
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 82 IDAVTDITYTYDDILQKSLQLADALQKR-GYRRGDIVSICSENRLDYPVLIVAASLLGIT 140
ID+ T + +Y ++ +A L G R+GD+V + N + +PV+ +A LG
Sbjct: 59 IDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGI 118
Query: 141 VSSINP 146
V+++NP
Sbjct: 119 VTTMNP 124
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 37.7 bits (88), Expect = 0.003
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVA 133
TY ++ +++ +LA L+ G V +C D V ++A
Sbjct: 26 TYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLVVALLA 68
>gnl|CDD|219977 pfam08700, Vps51, Vps51/Vps67. This family includes a presumed
domain found in a number of components of vesicular
transport. The VFT tethering complex (also known as GARP
complex, Golgi associated retrograde protein complex,
Vps53 tethering complex) is a conserved eukaryotic
docking complex which is involved recycling of proteins
from endosomes to the late Golgi. Vps51 (also known as
Vps67) is a subunit of VFT and interacts with the SNARE
Tlg1. Cog1_N is the N-terminus of the Cog1 subunit of
the eight-unit Conserved Oligomeric Golgi (COG) complex
that participates in retrograde vesicular transport and
is required to maintain normal Golgi structure and
function. The subunits are located in two lobes and Cog1
serves to bind the two lobes together probably via the
highly conserved N-terminal domain of approximately 85
residues.
Length = 87
Score = 35.3 bits (82), Expect = 0.003
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 164 ELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEISRI 204
EL+Q ++ A EE L++ V+ NY I+ A IS++
Sbjct: 23 ELRQIEKKLRAEIEELQEELRQLVYENYRDLIKAADTISKM 63
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 37.7 bits (88), Expect = 0.003
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 86 TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN 145
D TY + + + A + G GD V++ S NR + + I AA L G+ ++++
Sbjct: 34 GDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALH 93
Query: 146 P 146
P
Sbjct: 94 P 94
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 37.3 bits (87), Expect = 0.003
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 90 YTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT 149
+T+ ++ ++S + A+ L+ G RGD V++ + +I+ LG Q
Sbjct: 1 WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60
Query: 150 E 150
Sbjct: 61 P 61
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 37.2 bits (87), Expect = 0.004
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE 150
T+ ++ + + +A L G ++GD V++ +N ++ ++I A LG +N + +
Sbjct: 29 TFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS- 87
Query: 151 VVKELSQ 157
+EL
Sbjct: 88 -REELLW 93
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 37.1 bits (86), Expect = 0.005
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
+ +Y ++ + +L AL++ G +R + V + + +D+P+ + A GI ++N
Sbjct: 30 SLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLL 89
Query: 149 TE 150
T
Sbjct: 90 TA 91
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 36.8 bits (86), Expect = 0.005
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGI 139
D T +Y ++ ++S QLA L+ G GD V + L+ +VAA LL I
Sbjct: 10 DRTLSYAELDERSNQLAARLRALGVGPGDRVGVL----LERSADLVAA-LLAI 57
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 37.1 bits (87), Expect = 0.005
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
+ +TY + ++ LA L G +GD V I + N ++ + A + +G + +INP
Sbjct: 41 GLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINP 100
Query: 147 QY 148
Y
Sbjct: 101 AY 102
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 36.9 bits (85), Expect = 0.005
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 82 IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
I A T +Y + S LA L G R GD+V++ S+N + V++ AA G+ +
Sbjct: 17 IVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYI 76
Query: 142 SSINPQYT 149
++IN T
Sbjct: 77 TAINHHLT 84
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 37.0 bits (86), Expect = 0.006
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 90 YTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN 145
+TY + + + A AL G +RGD V++ NR+++ + + + LG IN
Sbjct: 47 WTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPIN 102
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 36.4 bits (84), Expect = 0.008
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLG 138
D + TY ++L + QLA+ L+ G ++GD V I ++ P+ ++A + +G
Sbjct: 118 DASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIG 169
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 36.3 bits (84), Expect = 0.008
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 70 QPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPV 129
QP+ R L T T+ ++ + LA AL +RG GD V I NR ++
Sbjct: 30 QPDAPALRFLGN-------TTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVE 82
Query: 130 LIVAASLLG 138
++AA++LG
Sbjct: 83 SVLAANMLG 91
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 36.2 bits (84), Expect = 0.008
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 92 YDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIV--AASLLGITVSSIN 145
+D++ Q++ + A L G R GD V++ N D+ AA LG +N
Sbjct: 14 FDELAQRAARAAGGLAALGVRPGDCVALLMRN--DFAFFEAAYAAMRLGAYAVPVN 67
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 36.2 bits (84), Expect = 0.009
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 90 YTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
YT+ + S +LA+AL++ G RGD V + + + +A LG ++
Sbjct: 7 YTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSV 63
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 36.1 bits (84), Expect = 0.009
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSEN 123
D T+ + + +LA AL +RG RGD V++ N
Sbjct: 41 DRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPN 77
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 36.0 bits (83), Expect = 0.010
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 89 TYTYDDILQKSLQLAD-ALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQ 147
T TY + Q Q A L + ++GD V++ N L YP+ G+TV ++NP
Sbjct: 50 TITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPL 109
Query: 148 YT 149
YT
Sbjct: 110 YT 111
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 35.9 bits (83), Expect = 0.011
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 86 TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN 145
D T TY + ++ L LA L+ G RG+ V+I + RL+ + A+L G IN
Sbjct: 22 HDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPIN 81
Query: 146 P 146
P
Sbjct: 82 P 82
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 36.0 bits (83), Expect = 0.011
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 88 ITYTYDDILQKSLQLADALQKR-GYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
+T +Y ++ + S A LQ+ GD +++ N L YP+ + A G+ V + NP
Sbjct: 48 VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTNP 107
Query: 147 QYTE 150
YT
Sbjct: 108 LYTA 111
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 36.0 bits (83), Expect = 0.012
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN 145
+Y + Q+ LQ A L RG +GD+V++ +N + L AAS LG IN
Sbjct: 29 SYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPIN 83
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 35.8 bits (83), Expect = 0.012
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 84 AVTDI--------TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAAS 135
AVT + +TY ++ ++A L + G RGD+VS N ++ VL +A S
Sbjct: 42 AVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACS 101
Query: 136 LLGITVSSINPQYTEVVKELS 156
+G ++ + P + E +ELS
Sbjct: 102 RIGAVLNPLMPIFRE--RELS 120
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 36.0 bits (83), Expect = 0.012
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 24/123 (19%)
Query: 90 YTYDDILQKSLQLADALQKR-GYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
TY + + ++A L ++G+ ++I S+N L+Y VL+ A + + +N +
Sbjct: 28 MTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRL 87
Query: 149 TEVVKELSQHCVGGLELQQK----RV-----EIGALAEETNSLLKKNVFHNYMLFIETAK 199
TE L Q K V +A ++K + ++ I + K
Sbjct: 88 TE----------NELIFQLKDSGTTVLFVEKTFQNMALS----MQKVSYVQRVISITSLK 133
Query: 200 EIS 202
EI
Sbjct: 134 EIE 136
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 35.6 bits (83), Expect = 0.015
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE 150
TY ++ +LA L G GD V + N ++ +L A LG P +
Sbjct: 42 TYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHRA 101
Query: 151 VVKELSQHC 159
E+
Sbjct: 102 H--EIGHFA 108
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 35.3 bits (82), Expect = 0.015
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENR 124
YT+ + ++ ++A ALQ G GD ++I S+N
Sbjct: 6 EYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNC 41
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 35.4 bits (82), Expect = 0.016
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
T TY ++ ++ + A L+ G R GD V+I N + V A LG V NP Y
Sbjct: 57 TTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLY 116
Query: 149 TE 150
T
Sbjct: 117 TA 118
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 35.2 bits (81), Expect = 0.019
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 100 LQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN 145
L LA L + G R GD+V+I + N Y ++A + G V+ +N
Sbjct: 43 LSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLN 88
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 35.1 bits (81), Expect = 0.021
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 90 YTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
Y+Y + ++S ++A+ L+K G RRGD V + N + ++AA LG V
Sbjct: 1 YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVV 52
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 34.9 bits (81), Expect = 0.022
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN--- 145
T TY ++ ++S LA L G R GD V++ + N + + + AA +G + +N
Sbjct: 74 TLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGF 133
Query: 146 --PQYTEVVKE 154
PQ EV
Sbjct: 134 SGPQLAEVAAR 144
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 35.1 bits (81), Expect = 0.024
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 89 TYTYDDILQKSLQLADALQKR-GYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQ 147
T TY ++ + S A LQ+ + GD +++ N L YPV + A G+ V + NP
Sbjct: 49 TLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPL 108
Query: 148 YTE 150
YT
Sbjct: 109 YTA 111
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 34.7 bits (79), Expect = 0.028
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 12/109 (11%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
TY ++ Q++ +L L+ G GD V+ N + A +G + + NP
Sbjct: 22 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANP 81
Query: 147 QYTEVVKELSQHCVGGLELQQKRV-----EIGALAEETNSLLKKNVFHN 190
+ + + L + +V + L E L K V H
Sbjct: 82 RLS------PKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL-KTVQHF 123
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 34.5 bits (80), Expect = 0.034
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 90 YTYDDILQKSLQLADALQKRGYRRGDIV 117
YTY D ++ +LA+AL+ G + GD V
Sbjct: 26 YTYADFYRRVRRLANALESLGVKPGDRV 53
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 34.2 bits (79), Expect = 0.036
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSI 144
T+TY ++ ++ +LA L G +GD V I + V ++A + +G I
Sbjct: 7 TWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPI 62
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 34.5 bits (80), Expect = 0.038
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSI 119
TY ++ ++ + A+ L+ G ++GD V+I
Sbjct: 88 KITYRELHREVCRFANVLKSLGVKKGDRVAI 118
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 34.2 bits (79), Expect = 0.042
Identities = 13/62 (20%), Positives = 28/62 (45%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
+ TY ++ ++ + +AL++ G R + V + + ++P A +G IN
Sbjct: 30 SLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLL 89
Query: 149 TE 150
T
Sbjct: 90 TP 91
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 34.0 bits (78), Expect = 0.045
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 89 TYTYDDILQKSLQLADALQK-RGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN 145
T+TY + L+ A L R + GD V+I + N ++ L +A +G + IN
Sbjct: 5 TWTYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFIN 62
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 34.0 bits (78), Expect = 0.047
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN--- 145
T T+ ++ ++S LA ALQ +V I N + ++AA+ +G + +N
Sbjct: 68 TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSF 127
Query: 146 --PQYTEVVKE 154
P EVV
Sbjct: 128 AGPALAEVVTR 138
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 34.2 bits (79), Expect = 0.048
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP-- 146
T+TY ++L + A+ L G GD+V+ N + + GI + INP
Sbjct: 58 TWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAGI-ANPINPLL 116
Query: 147 ---QYTEVVKE 154
Q E+++
Sbjct: 117 EPEQIAELLRA 127
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 33.7 bits (78), Expect = 0.057
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVA 133
D + TY ++ +++ +LA L G R GDIV++C E V I+A
Sbjct: 15 DGSLTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAILA 61
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 33.7 bits (78), Expect = 0.058
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSI 119
T TY ++ ++ + A+ L+ G ++GD V+I
Sbjct: 78 TITYRELYREVCRFANVLKSLGVKKGDRVAI 108
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 33.6 bits (78), Expect = 0.069
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 83 DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSI 119
D TY ++ ++ + A+AL+ G ++GD V+I
Sbjct: 92 DPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAI 128
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 33.3 bits (77), Expect = 0.074
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 101 QLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE 150
QLA ++G G V++ +N + + +A G V +NPQ +
Sbjct: 40 QLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLPQ 89
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 33.4 bits (77), Expect = 0.077
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 88 ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGI 139
+Y+ + ++L++ ALQK G + GD V E+ D+ + A L GI
Sbjct: 14 KFISYEQLFTRALKVLGALQKLGIKPGDEVVFQIEDNEDFIYVFWACILGGI 65
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 33.4 bits (77), Expect = 0.080
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN 145
D ++TY ++ ++A AL G ++GD V+ N Y +L +A + G +N
Sbjct: 34 DRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVN 92
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 32.7 bits (75), Expect = 0.13
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT 149
TY + + LA AL G G V I S N +++ ++ +AA G+ + ++P Y+
Sbjct: 82 TYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYS 140
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 32.5 bits (75), Expect = 0.14
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 86 TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN 145
TY ++ ++ +LA+AL+ G ++GD V++ N +Y A +G + IN
Sbjct: 28 DGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPIN 87
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 32.4 bits (74), Expect = 0.15
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVS 118
TY I ++L+++ AL + G + GD V+
Sbjct: 41 TYAQIHDRALKVSQALDRDGIKLGDRVA 68
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 32.2 bits (73), Expect = 0.17
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 70 QPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPV 129
+P + YR ++Y ++ + ++A L + G RGD+VS NR ++
Sbjct: 38 KPALTAYRD----GHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTA 93
Query: 130 LIVAASLLGITVSSINPQYTEVVKELS 156
L +A + +G ++ + P + E +ELS
Sbjct: 94 LYLACARIGAVLNPLMPIFRE--RELS 118
>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase. This enzyme
catalyzes the first step of the mevalonate pathway of
IPP biosynthesis. Most bacteria do not use this pathway,
but rather the deoxyxylulose pathway [Central
intermediary metabolism, Other].
Length = 652
Score = 31.8 bits (72), Expect = 0.27
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE 150
T+ ++ ++ LA AL+ G R GD VS N V ++A + +G SS +P +
Sbjct: 116 TWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGA 175
Query: 151 --VVKELSQ 157
V+ Q
Sbjct: 176 RGVLDRFQQ 184
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 31.5 bits (71), Expect = 0.29
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVSI----CSENRLDYPVLIVAASLLGITVSSINP 146
T+ K + A+ LQK G +GD V+I C + + Y ++A GI V + NP
Sbjct: 51 TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAG---GIVVQT-NP 106
Query: 147 QYTEVVKELSQHCVGG 162
YTE E H G
Sbjct: 107 LYTERELEYQLHDSGA 122
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 31.4 bits (72), Expect = 0.30
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIV 117
YTY D+ S +LA+ L G + GD V
Sbjct: 28 RYTYGDLDAASARLANLLVALGVKPGDRV 56
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 31.6 bits (72), Expect = 0.33
Identities = 10/47 (21%), Positives = 26/47 (55%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVA 133
++Y ++ ++ + LA+ L++RG + GD V++ + + + A
Sbjct: 481 RYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA 527
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 31.6 bits (72), Expect = 0.34
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 89 TYTYDDILQKSLQLADALQKR-GYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQ 147
T+ + ++S A LQ G ++GD V++ N L YP+ + G+ V ++NP
Sbjct: 48 VMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPL 107
Query: 148 YT 149
YT
Sbjct: 108 YT 109
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 31.0 bits (70), Expect = 0.44
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSEN 123
+ YT+ Q+ +LA AL KR G V++ + N
Sbjct: 43 SVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPN 79
>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional.
Length = 1452
Score = 31.0 bits (70), Expect = 0.59
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGIT 140
TY + ++ +L L G R GD++ + E + +L VA +L G T
Sbjct: 459 TYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFT 508
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 30.3 bits (69), Expect = 0.65
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 91 TYDDILQKSLQLADALQKRGY-RRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
TY ++ +++ +LA L+ G GD V++ E + V I+A G ++P Y
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAY 59
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 30.3 bits (69), Expect = 0.71
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSI 119
T TY ++ +++ +A AL+ G GD+V++
Sbjct: 12 TLTYGELARRANAIAAALRAAGVAPGDLVAV 42
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 30.1 bits (68), Expect = 0.85
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 90 YTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGI 139
Y+Y ++ + S + A+ L G +G+ V P L VAA LG
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRS---PELYVAA--LGT 45
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 29.6 bits (67), Expect = 1.2
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYR-RGDIVSICSENRLDYPVLIVAASLLGITVSSIN 145
D ++ + ++ S A AL+ R R V + +N ++ +L+ AA+L GI +N
Sbjct: 26 DSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLN 85
Query: 146 P 146
P
Sbjct: 86 P 86
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 29.3 bits (66), Expect = 1.5
Identities = 11/53 (20%), Positives = 25/53 (47%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
+T+ D+ S + A+ + G +GD V + + R ++ ++A +G
Sbjct: 47 IFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIA 99
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 29.4 bits (66), Expect = 1.5
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 82 IDAVTDITYTY---DDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLG 138
+D +TY D ++ + LA L++RG G+ +++ + N + L A + +G
Sbjct: 15 VDLALGRRWTYAELDALVGR---LAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVG 71
Query: 139 ITVSSIN 145
+N
Sbjct: 72 AIYVPLN 78
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 29.5 bits (66), Expect = 1.7
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
+ T Y ++ +++ +LA AL +RG +V + E ++ V ++A G ++P
Sbjct: 534 EETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDP 593
Query: 147 QYTE 150
+Y
Sbjct: 594 EYPA 597
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 29.2 bits (65), Expect = 2.1
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQ 147
T+ I + +L + L+ RG GD V +C + D L++A G+ NP+
Sbjct: 32 THGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPE 88
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 28.8 bits (65), Expect = 2.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGD 115
++Y ++ Q S LA +L+++G + GD
Sbjct: 48 QFSYRELNQASDNLACSLRRQGIKPGD 74
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 28.7 bits (65), Expect = 2.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 82 IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSI 119
+DA YTY ++ + S + A+ L++ G +GD V I
Sbjct: 66 LDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFI 103
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 28.5 bits (64), Expect = 2.7
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 90 YTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQ 147
YTY D +++ QLA AL G GD V + N + S G +INP+
Sbjct: 40 YTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPR 97
>gnl|CDD|129946 TIGR00868, hCaCC, calcium-activated chloride channel protein 1.
found a row in 1A13.INFO that was not parsed out AC
found a row in 1A13.INFO that was not parsed out EC
found a row in 1A13.INFO that was not parsed out GA
found a row in 1A13.INFO that was not parsed out SO
found a row in 1A13.INFO that was not parsed out RH
found a row in 1A13.INFO that was not parsed out EN
found a row in 1A13.INFO that was not parsed out GS
found a row in 1A13.INFO that was not parsed out AL
found a row in 1A13.INFO that was not parsed out The
Epithelial Chloride Channel (E-ClC) Family (TC 1.A.13)
found a row in 1A13.INFO that was not parsed out found a
row in 1A13.INFO that was not parsed out Mammals have
multiple isoforms of epithelial chloride channel
proteins. The first member of this family to be
characterized was a respiratory epithelium, Ca found a
row in 1A13.INFO that was not parsed out 2+-regulated,
chloride channel protein isolated from bovine tracheal
apical membranes. It was biochemically characterized as
a 140 kDa complex. The purified found a row in 1A13.INFO
that was not parsed out complex when reconstituted in a
planar lipid bilayer behaved as an anion-selective
channel. It was regulated by Ca 2+ via a calmodulin
kinase II-dependent found a row in 1A13.INFO that was
not parsed out mechanism. When the cRNA was injected
into Xenopus oocytes, an outward rectifying,
DIDS-sensitive, anion conductance was measured. A
related gene, found a row in 1A13.INFO that was not
parsed out Lu-ECAM, was cloned from the bovine aortic
endothelial cell line, BAEC. It is expressed in the lung
and spleen but not in the trachea. Homologues are found
in found a row in 1A13.INFO that was not parsed out
several mammals, and at least three
paralogues(hCaCC-1-3) are present in humans, each with
different tissue distributions. found a row in 1A13.INFO
that was not parsed out [Transport and binding proteins,
Anions].
Length = 863
Score = 28.7 bits (64), Expect = 3.0
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 31 SGVVVHTVDSGSGAVAQLKSVFATCCMISGLILFIFQYIQPNVVHYRLLFQIDAVTDITY 90
SG ++HT+ G A +L+ + M GL + N + IDA ++
Sbjct: 429 SGAIIHTIALGPSAAKELEELSD---MTGGLRFYASDQADNNGL-------IDAFGALSS 478
Query: 91 TYDDILQKSLQL 102
Q+S+QL
Sbjct: 479 GNGSASQQSIQL 490
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 28.0 bits (63), Expect = 4.2
Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 88 ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQ 147
+ +Y + Q+ LA+ L+ G +R +++ +N +D+ + +A GI I
Sbjct: 1 DSLSYQQLWQEVDLLAEQLRALGVKR---IALALDNSIDWVIADLACLQAGIVCIPIPHF 57
Query: 148 YTEVVKELSQHCV 160
++ + +QH +
Sbjct: 58 FSA---QQTQHLL 67
>gnl|CDD|131121 TIGR02066, dsrB, sulfite reductase, dissimilatory-type beta
subunit. Dissimilatory sulfite reductase catalyzes the
six-electron reduction of sulfite to sulfide, as the
terminal reaction in dissimilatory sulfate reduction.
It remains unclear however, whether trithionate and
thiosulfate serve as intermediate compounds to sulfide,
or as end products of sulfite reduction. Sulfite
reductase is a multisubunit enzyme composed of dimers
of either alpha/beta or alpha/beta/gamma subunits, each
containing a siroheme and iron sulfur cluster
prosthetic center. Found in sulfate-reducing bacteria,
these genes are commonly located in an unidirectional
gene cluster. This model describes the beta subunit of
sulfite reductase [Central intermediary metabolism,
Sulfur metabolism].
Length = 341
Score = 27.9 bits (62), Expect = 4.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 11 HGKFRYHRFNKQPTLLNITLSGVVVHTVDSGS 42
+GK++YH K + ++ SG V++TV +G+
Sbjct: 6 YGKWKYHEVVKPGVIKHVAESGDVIYTVKAGT 37
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 28.0 bits (63), Expect = 4.2
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 39/107 (36%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSI--------------CSE------------ 122
TYTY ++ + +LA L+K G +GD V I C+
Sbjct: 73 TYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGF 132
Query: 123 ------NRLDY--PVLIVAASLLGITVSSINPQYTEVVK---ELSQH 158
+R+D P LIV AS GI + P Y ++ ELSQH
Sbjct: 133 ASKELASRIDDAKPKLIVTAS-FGIEPGRVVP-YKPLLDKALELSQH 177
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 27.8 bits (62), Expect = 4.5
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 102 LADALQKRGYRRGD-IVSICSENRLDYPVLIVAASLL--GITVSSINPQYTEVVK 153
L D L+ + R D I IC + Y L A L G+T I T VV+
Sbjct: 25 LTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQ 79
>gnl|CDD|217545 pfam03416, Peptidase_C54, Peptidase family C54.
Length = 277
Score = 27.3 bits (61), Expect = 5.4
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 115 DIVSICS----ENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQ--HCVG 161
DIV CS P+L++ LGI INP Y E +KE VG
Sbjct: 144 DIVEKCSAPNNGQSAWKPLLLLIPLRLGID--KINPVYIEALKECFSLPQSVG 194
>gnl|CDD|216386 pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family
M19).
Length = 316
Score = 27.6 bits (62), Expect = 5.5
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 102 LADALQKRGYRRGDIVSICSEN 123
L L +RGY +I I N
Sbjct: 288 LTAELLRRGYSEAEIEKILGGN 309
>gnl|CDD|220149 pfam09234, DUF1963, Domain of unknown function (DUF1963). This
domain is found in a set of hypothetical bacterial
proteins. Its exact function has not, as yet, been
described.
Length = 221
Score = 27.3 bits (61), Expect = 5.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 75 HYRLLFQIDAVTDITYTYDD 94
+ LL QID+ I + D
Sbjct: 175 DWILLLQIDSDEKIDIMWGD 194
>gnl|CDD|225145 COG2236, COG2236, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 192
Score = 27.3 bits (61), Expect = 5.7
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 90 YTYDDILQKSLQLADALQKRGYRRGDIVSI 119
++++I + LA+ ++ G++ IV+I
Sbjct: 7 VSWEEIHRLCRALAEKIRASGFKPDVIVAI 36
>gnl|CDD|225230 COG2355, COG2355, Zn-dependent dipeptidase, microsomal dipeptidase
homolog [Amino acid transport and metabolism].
Length = 313
Score = 27.3 bits (61), Expect = 5.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 101 QLADALQKRGYRRGDIVSICSEN 123
L AL +RGY +I I EN
Sbjct: 280 NLTAALIERGYSEEEIEKIAGEN 302
>gnl|CDD|188347 TIGR03595, Obg_CgtA_exten, Obg family GTPase CgtA, C-terminal
extension. CgtA (see model TIGR02729) is a broadly
conserved member of the obg family of GTPases associated
with ribosome maturation. This model represents a unique
C-terminal domain found in some but not all sequences of
CgtA. This region is preceded, and may be followed, by a
region of low-complexity sequence.
Length = 69
Score = 25.5 bits (57), Expect = 5.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 98 KSLQLADALQKRGYRRGDIVSIC 120
K L + DAL+K G + GD V I
Sbjct: 41 KKLGVEDALRKAGAKDGDTVRIG 63
>gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional.
Length = 231
Score = 27.4 bits (62), Expect = 5.8
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 11/42 (26%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIV 132
TYD++L+K L++ DA +S+ +N++ P+++
Sbjct: 179 TYDEVLEKGLKVMDATA---------ISLARDNKI--PIIVF 209
>gnl|CDD|217990 pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit.
The Exodeoxyribonuclease V enzyme is a multi-subunit
enzyme comprised of the proteins RecB, RecC (this
family) and RecD. This enzyme plays an important role in
homologous genetic recombination, repair of double
strand DNA breaks resistance to UV irradiation and
chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes
ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of
ssDNA or dsDNA and unwinding of dsDNA. This family
consists of two AAA domains.
Length = 756
Score = 27.6 bits (62), Expect = 6.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 141 VSSINPQYTEVVKELSQHC 159
+SS+ P Y E+++ LS+H
Sbjct: 212 ISSLPPLYLEILQALSRHT 230
>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase
(E1) component, and related enzymes [Energy production
and conversion].
Length = 906
Score = 27.6 bits (62), Expect = 6.6
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 65 IFQYIQPNV-VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDI 116
F + V +R L + D T K L+L +A + RG+ ++
Sbjct: 39 FFDGLSDPVRESFRRLAKKGNDPDAT----LKSVKVLRLINAYRSRGHLHANL 87
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 27.4 bits (61), Expect = 6.7
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 90 YTYDDILQKSLQLADALQKRGYRRGDIVS 118
+Y ++ ++S ++A+ L G + GD V+
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVA 29
>gnl|CDD|217094 pfam02542, YgbB, YgbB family. The ygbB protein is a putative
enzyme of deoxy-xylulose pathway (terpenoid
biosynthesis).
Length = 156
Score = 26.6 bits (60), Expect = 6.8
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 93 DDILQKSLQLADALQKRGYRRG--DIVSICSENRL-DYPVLIVA--ASLLGITVSSIN 145
+L++ ++L +++ GYR G D+ I ++ + + A A LLGI +N
Sbjct: 74 RILLREVVRL---VREAGYRIGNIDVTIIAERPKIAPHRDAMRANIAELLGIPEDRVN 128
>gnl|CDD|238626 cd01301, rDP_like, renal dipeptidase (rDP), best studied in mammals
and also called membrane or microsomal dipeptidase, is a
membrane-bound glycoprotein hydrolyzing dipeptides and
is involved in hydrolytic metabolism of penem and
carbapenem beta-lactam antibiotics. Although the
biological function of the enzyme is still unknown, it
has been suggested to play a role in the renal
glutathione metabolism.
Length = 309
Score = 27.2 bits (61), Expect = 7.1
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 102 LADALQKRGYRRGDIVSICSEN 123
L L +RGY +I I N
Sbjct: 284 LTAELLERGYSEEEIEKIAGGN 305
>gnl|CDD|235623 PRK05849, PRK05849, hypothetical protein; Provisional.
Length = 783
Score = 27.3 bits (61), Expect = 8.2
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 22 QPTLLNITLSGVVVHTVDSGSGA 44
QP L +I LSGV + + D SGA
Sbjct: 114 QPMLEDIVLSGVAM-SRDPESGA 135
>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain. Three-helix domain
that (in Sso1p) slows the rate of its reaction with the
SNAP-25 homologue Sec9p.
Length = 117
Score = 25.8 bits (57), Expect = 9.3
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 164 ELQQKRVEIGALAEETNSLLKK 185
+L++ +I LA+E + LK+
Sbjct: 47 KLERLIDDIKRLAKEIRAKLKE 68
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP)
including hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Fatty acid transport proteins (FATP) of this
family transport long-chain or very-long-chain fatty
acids across the plasma membrane. At least five copies
of FATPs are identified in mammalian cells. This family
includes hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Each FATP has unique patterns of tissue
distribution. These FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. The hsFATP
proteins exist in two splice variants; the b variant,
lacking exon 3, has no acyl-CoA synthetase activity.
FATPs are key players in the trafficking of exogenous
fatty acids into the cell and in intracellular fatty
acid homeostasis.
Length = 535
Score = 27.0 bits (60), Expect = 9.4
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 89 TYTYDDILQKSLQLADALQKR-GYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
T TY ++ ++S Q+A AL G + GD V++ N + + + + LG + +N
Sbjct: 3 TVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNT 61
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.393
Gapped
Lambda K H
0.267 0.0712 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,815,924
Number of extensions: 1021975
Number of successful extensions: 1675
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1672
Number of HSP's successfully gapped: 138
Length of query: 214
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 121
Effective length of database: 6,812,680
Effective search space: 824334280
Effective search space used: 824334280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (25.8 bits)