RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16164
(214 letters)
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 88.1 bits (219), Expect = 1e-20
Identities = 20/87 (22%), Positives = 45/87 (51%)
Query: 64 FIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSEN 123
+ + ++ + + DA ++ TY + + S++LA+A+++ G + +CSEN
Sbjct: 25 QLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN 84
Query: 124 RLDYPVLIVAASLLGITVSSINPQYTE 150
L + + ++ A +G+ V+ N Y E
Sbjct: 85 SLQFFMPVLGALFIGVAVAPANDIYNE 111
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 86.9 bits (216), Expect = 4e-20
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 64 FIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSEN 123
+ +Y++ + F +AVT + Y+Y + L+KS L ALQ G +++CSEN
Sbjct: 28 QLRKYMERYAKLGAIAF-TNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSEN 86
Query: 124 RLDYPVLIVAASLLGITVSSINPQYTE 150
++ + ++A +G+ V+ N YT
Sbjct: 87 CEEFFIPVIAGLFIGVGVAPTNEIYTL 113
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 85.8 bits (213), Expect = 1e-19
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 82 IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
I+ T YTY D+ S Q+A K G + D+V + N ++ + +AAS G T
Sbjct: 81 INGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATA 140
Query: 142 SSINPQYTEVVKELS 156
++ NP +T E++
Sbjct: 141 TAANPFFTP--AEIA 153
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 84.5 bits (210), Expect = 3e-19
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 82 IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
I+ YTY D+ + ++A L K G ++GD++ + + ++ + + AS G +
Sbjct: 42 INGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAII 101
Query: 142 SSINPQYTEVVKELSQH 158
++ NP T EL++H
Sbjct: 102 TAANPFSTP--AELAKH 116
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 68.4 bits (168), Expect = 9e-14
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
+ + +I + + +LA + ++G R+G+ V +C N +DY + I A + T INP Y
Sbjct: 52 SMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMY 111
Query: 149 TE 150
Sbjct: 112 KS 113
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 62.6 bits (153), Expect = 7e-12
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 82 IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
I+ +Y +++ ++ ++A+ L RG + GD V+ +E ++ VL +A G
Sbjct: 21 IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80
Query: 142 SSINPQYTE 150
+N YT
Sbjct: 81 LPLNTAYTL 89
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 60.7 bits (148), Expect = 4e-11
Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
+ TY ++ +++ + A AL+ G + + + + + PV + A G+ N
Sbjct: 46 TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANT 105
Query: 147 QYTEVVKELSQH 158
T +
Sbjct: 106 LLTP--ADYVYM 115
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 59.9 bits (146), Expect = 6e-11
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 82 IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
++ TD+ TY + + + AD L G +GD V++ N +++ L A+ LG
Sbjct: 36 VEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVA 95
Query: 142 SSINPQYT 149
IN +
Sbjct: 96 VPINTRLA 103
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 58.3 bits (142), Expect = 2e-10
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
+ T+ D L ++ +LA L + G GD V+I S+N + LI A +L+G + +N
Sbjct: 29 GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNY 88
Query: 147 QYT 149
+
Sbjct: 89 RLN 91
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 58.0 bits (141), Expect = 3e-10
Identities = 14/68 (20%), Positives = 28/68 (41%)
Query: 82 IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
+ T+ ++ + +A L G R V++ + N D + I+A LG
Sbjct: 22 AVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81
Query: 142 SSINPQYT 149
+ +NP+
Sbjct: 82 ALLNPRLK 89
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 55.3 bits (134), Expect = 2e-09
Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
+ +Y ++ Q + LA +L+++G + G+ + N + + A LG+
Sbjct: 48 ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALF 107
Query: 147 QYTEVVKELSQHC 159
+ EL+ +
Sbjct: 108 SHQR--SELNAYA 118
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 55.2 bits (134), Expect = 2e-09
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 83 DAVTD--ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGIT 140
A+T ++Y ++ ++ +LA QK G ++ D V + N ++ +I A LG
Sbjct: 42 IAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101
Query: 141 VSSINPQYTE 150
P +
Sbjct: 102 PVFALPSHRS 111
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 54.1 bits (131), Expect = 5e-09
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 83 DAVT--DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGIT 140
A+ + +Y ++ + S LA L ++G +GD + N ++ ++ A G+
Sbjct: 47 LAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106
Query: 141 VSSINPQYTEVVKELSQHC 159
V + + + EL+
Sbjct: 107 VLNALYSHRQ--YELNAFI 123
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 52.6 bits (127), Expect = 2e-08
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
+YTY ++ ++ LA L + V + +N + +LI A L I ++ IN
Sbjct: 24 QESYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINT 80
Query: 147 QYTE 150
+ T
Sbjct: 81 RLTP 84
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 50.3 bits (121), Expect = 1e-07
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
+ + TY ++ + A + V++ + ++ V +VAA L G+ +NP
Sbjct: 46 ERSLTYAELAAAAGATAGRI-----GGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNP 100
Query: 147 QYTE 150
+ +
Sbjct: 101 KSGD 104
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 41.9 bits (99), Expect = 7e-05
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 70 QPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPV 129
PN L + + T TY+ + Q + +A LQ G + GD V + L
Sbjct: 24 SPNKKSCTFL---NKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQ 80
Query: 130 LIVAASLLGI 139
+ G
Sbjct: 81 AFLGCLYAGC 90
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 41.0 bits (97), Expect = 2e-04
Identities = 13/62 (20%), Positives = 25/62 (40%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
+T+ D+ S + A+ K G +GD V + ++R D+ ++ LG
Sbjct: 86 IFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHML 145
Query: 149 TE 150
Sbjct: 146 KT 147
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 40.4 bits (95), Expect = 3e-04
Identities = 9/58 (15%), Positives = 21/58 (36%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
Y + ++ A L ++GD V++ +E ++ A G+ +
Sbjct: 49 QLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAI 106
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 39.5 bits (93), Expect = 4e-04
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 89 TYTYDDILQKSLQLADAL-QKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQ 147
+ + ++ + S Q A+ L G +RGD V++ ++ ++I+ G+ Q
Sbjct: 73 MWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQ 132
Query: 148 YTE 150
Sbjct: 133 MKS 135
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 39.0 bits (92), Expect = 7e-04
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 90 YTYDDILQKSLQLADALQKRGYRRGDIVSI 119
TY ++ Q++ +L L+ G GD V+
Sbjct: 48 TTYAEVYQRARRLMGGLRALGVGVGDRVAT 77
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 38.5 bits (90), Expect = 0.001
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 70 QPNVVHYRLL-FQIDAVTD-ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDY 127
QP+ + + ++ D IT T+ + +++L +A L + G GD V I + L+Y
Sbjct: 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEY 95
Query: 128 PVLIVAASLLGITVSSINP 146
V + A G ++
Sbjct: 96 VVAFLGALQAGRIAVPLSV 114
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 36.1 bits (84), Expect = 0.007
Identities = 15/58 (25%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Query: 84 AVT--DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGI 139
A+T T +Y ++ +++ ++A LQK G +G +V++ ++ L+ L++ +LG+
Sbjct: 482 ALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLE---LVIG--ILGV 534
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 35.2 bits (82), Expect = 0.012
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 84 AVT--DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGI 139
A+ + Y +L + QL+D L + + G + + E + I LL I
Sbjct: 45 AIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRE---SITC--LLAI 97
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 35.2 bits (82), Expect = 0.013
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 84 AVT--DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGI 139
A D TY + + S LA + + + + + +I+ LG
Sbjct: 19 AFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPE---MIIN--FLGC 71
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 34.8 bits (81), Expect = 0.018
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 84 AVT--DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGI 139
A+ + TY ++ K+ QLA ++G + +V I E +D L + +L +
Sbjct: 57 AIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSID---LFIG--ILAV 109
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 33.7 bits (78), Expect = 0.035
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 89 TYTYDDILQKSLQLADALQKRGYRRGDIVSI 119
+Y ++ + + A+ L G ++GD+V+I
Sbjct: 107 HISYRELHRDVCRFANTLLDLGIKKGDVVAI 137
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 32.9 bits (76), Expect = 0.059
Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 91 TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGI 139
TY + + S +A + V + D ++ + +
Sbjct: 31 TYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYD---MLAT--FVAL 74
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 30.2 bits (69), Expect = 0.58
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 91 TYDDILQKSLQLADALQKRG-YRRGDIVSICSENRLDYPVLIVAASLLGI 139
TY ++ ++S + A A+QKR + + + +IV+ LG
Sbjct: 28 TYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPH---MIVS--FLGS 72
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.65
Identities = 26/161 (16%), Positives = 50/161 (31%), Gaps = 36/161 (22%)
Query: 75 HYRLLFQIDAVTDITYTYDDILQ-------KSLQLAD-------ALQKRGYRRGDIVSIC 120
H+ + F+ + Y Y DIL + D L K I+
Sbjct: 4 HHHMDFE---TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID--HIIMSK 58
Query: 121 S-ENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGL------ELQQKRVEIG 173
+ L +S + V+E+ + L E +Q +
Sbjct: 59 DAVSGTLR--------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 174 ALAEETNSLLKKN-VFHNYMLF-IETAKEISRILYIKQPRQ 212
E+ + L N VF Y + ++ ++ + L +P +
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Score = 29.1 bits (64), Expect = 1.4
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 67 QYIQPNVVHY-RLL-----FQIDAVTD-ITYTYDDILQKSLQ 101
YI N Y RL+ F + I Y D+L+ +L
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 29.9 bits (68), Expect = 0.76
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 89 TYTYDDILQKSLQLADAL-QKRGYRRGDIVSI 119
+ TY ++L++ Q+A L G R+GD V++
Sbjct: 113 SITYKELLEEVCQVAQVLTYSMGVRKGDTVAV 144
>2lnv_A General secretion pathway protein C; transport protein; NMR
{Dickeya dadantii}
Length = 104
Score = 28.0 bits (62), Expect = 0.88
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 23 PTLLNITLSGVVVHTVDSGSGAV 45
P+ LN++L+GV+ DS S A+
Sbjct: 21 PSTLNLSLTGVMAGDDDSRSIAI 43
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target
9257A, protein structure initiative; 2.00A {Caulobacter
crescentus}
Length = 417
Score = 28.6 bits (64), Expect = 1.6
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 102 LADALQKRGYRRGDIVSICSEN 123
+ L+ GY DI +I S N
Sbjct: 379 ITARLKAEGYSDADIEAIWSGN 400
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A
{Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A*
3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Length = 400
Score = 28.6 bits (64), Expect = 1.7
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 102 LADALQKRGYRRGDIVSICSEN 123
L L RG+ + D+ + +N
Sbjct: 340 LIAELLDRGWSQSDLAKLTWKN 361
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia
coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Length = 316
Score = 28.4 bits (64), Expect = 1.9
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 8/78 (10%)
Query: 77 RLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASL 136
+L +D + +I D S + Q+RGY + L A
Sbjct: 3 KLGIVMDPIANINIKKD----SSFAMLLEAQRRGYE----LHYMEMGDLYLINGEARAHT 54
Query: 137 LGITVSSINPQYTEVVKE 154
+ V ++ V E
Sbjct: 55 RTLNVKQNYEEWFSFVGE 72
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 417
Score = 28.3 bits (63), Expect = 1.9
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 102 LADALQKRGYRRGDIVSICSEN 123
+ L RGY DI + N
Sbjct: 378 VTAELITRGYSDADIAKLWGGN 399
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural
genomics, nysgrc, target 9523C, phosphinate inhibitor,
PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB:
3fdg_A
Length = 364
Score = 28.1 bits (63), Expect = 2.1
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 102 LADALQKRGYRRGDIVSICSEN 123
L A++ GY + +C EN
Sbjct: 325 LQAAMRAHGYDEPLMRKLCHEN 346
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET
lactamase, cilastatin, complex (hydrolase-inhibitor),
hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7
PDB: 1itq_A*
Length = 369
Score = 27.3 bits (61), Expect = 4.2
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 102 LADALQKRGYRRGDIVSICSEN 123
L L +R + ++ ++N
Sbjct: 308 LIAELLRRNWTEAEVKGALADN 329
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics,
protein structure initiative; 2.60A {Pseudomonas
aeruginosa}
Length = 325
Score = 26.9 bits (60), Expect = 5.6
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 102 LADALQKRGYRRGDIVSICSEN 123
L + L KRG + + EN
Sbjct: 293 LTETLLKRGMPERVVRKVMGEN 314
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar
biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A
{Thermus thermophilus} PDB: 3oa0_A*
Length = 312
Score = 26.1 bits (57), Expect = 9.6
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 90 YTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAA 134
++ L+ + + D +SI S N L YP + +A
Sbjct: 57 EAFEAYLEDLRDRGEGV--------DYLSIASPNHLHYPQIRMAL 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.393
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,185,533
Number of extensions: 187665
Number of successful extensions: 779
Number of sequences better than 10.0: 1
Number of HSP's gapped: 775
Number of HSP's successfully gapped: 45
Length of query: 214
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 124
Effective length of database: 4,188,903
Effective search space: 519423972
Effective search space used: 519423972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (24.8 bits)