RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16164
(214 letters)
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 74.2 bits (181), Expect = 4e-16
Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 78 LLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLL 137
+ DA ++ TY + + S++LA+A+++ G + +CSEN L + + ++ A +
Sbjct: 36 TIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI 95
Query: 138 GITVSSINPQYTE 150
G+ V+ N Y E
Sbjct: 96 GVAVAPANDIYNE 108
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 68.9 bits (167), Expect = 3e-14
Identities = 14/69 (20%), Positives = 28/69 (40%)
Query: 82 IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
+ T+ ++ + +A L G R V++ + N D + I+A LG
Sbjct: 22 AVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81
Query: 142 SSINPQYTE 150
+ +NP+
Sbjct: 82 ALLNPRLKS 90
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 66.8 bits (162), Expect = 1e-13
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
+ TY ++ K+ QLA ++G + +V I E +D + I+A G I+
Sbjct: 46 NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDI 105
Query: 147 QYTE 150
+Y +
Sbjct: 106 EYPK 109
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 66.6 bits (161), Expect = 1e-13
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 87 DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
+ ++Y ++ ++ +LA QK G ++ D V + N ++ +I A LG P
Sbjct: 48 NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALP 107
Query: 147 QYTE 150
+
Sbjct: 108 SHRS 111
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 65.7 bits (159), Expect = 2e-13
Identities = 14/72 (19%), Positives = 30/72 (41%)
Query: 79 LFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLG 138
+ ++ TY ++ Q++ +L L+ G GD V+ N + A +G
Sbjct: 30 VSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 89
Query: 139 ITVSSINPQYTE 150
+ + NP+ +
Sbjct: 90 AVLHTANPRLSP 101
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 63.9 bits (155), Expect = 1e-12
Identities = 14/68 (20%), Positives = 31/68 (45%)
Query: 83 DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
D +Y ++ + + A+ L G ++GD+V+I + V ++A + +G S
Sbjct: 97 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 156
Query: 143 SINPQYTE 150
I ++
Sbjct: 157 VIFGGFSP 164
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 57.2 bits (137), Expect = 2e-10
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 83 DAVTDITYTYDDILQKSLQLADALQ-KRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
+ + TY ++L++ Q+A L G R+GD V++ + + ++A S +G
Sbjct: 84 EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIH 143
Query: 142 SSINPQYTE 150
S + ++
Sbjct: 144 SVVFAGFSS 152
>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 179
Score = 28.3 bits (63), Expect = 0.54
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 80 FQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIV 132
+++DA Y D +L + R Y DI++IC + +Y I
Sbjct: 39 WKLDA---DKYENDP------ELEKIRKMRNYSWMDIITICKDTLPNYEEKIK 82
>d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 369
Score = 28.5 bits (63), Expect = 0.62
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 102 LADALQKRGYRRGDIVSICSEN 123
L L +R + ++ ++N
Sbjct: 308 LIAELLRRNWTEAEVKGALADN 329
>d1w36c1 c.37.1.19 (C:1-347) Exodeoxyribonuclease V gamma chain
(RecC), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 347
Score = 26.9 bits (59), Expect = 2.1
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 95 ILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKE 154
+++ + QL R + P L + GI S++ P Y + ++
Sbjct: 172 LVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGI--SALPPVYLQALQA 229
Query: 155 LSQHC 159
L +H
Sbjct: 230 LGKHI 234
>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 76
Score = 23.8 bits (52), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 98 KSLQLADALQKRGYRRGDIVSIC 120
+ + AL+ +G R GD+V I
Sbjct: 44 RRQGVEAALRAKGVRAGDLVRIG 66
>d2cqaa1 b.40.4.14 (A:8-89) RuvB-like 2 protein, RUVBL2 (TIP49b)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 23.5 bits (51), Expect = 8.1
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 101 QLADALQKRGYRRGDIVSI 119
++ ++L K + GD+++I
Sbjct: 46 KMIESLTKDKVQAGDVITI 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.393
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 761,039
Number of extensions: 33581
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 14
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.2 bits)