Query psy16169
Match_columns 139
No_of_seqs 42 out of 44
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 22:32:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12443 AKNA: AT-hook-contain 88.6 0.92 2E-05 34.4 4.5 41 15-55 36-77 (106)
2 PF09789 DUF2353: Uncharacteri 88.1 4.9 0.00011 35.3 9.2 73 24-96 66-154 (319)
3 PF12325 TMF_TATA_bd: TATA ele 88.0 8.2 0.00018 29.3 9.3 71 27-122 27-100 (120)
4 PF13870 DUF4201: Domain of un 86.9 9.3 0.0002 29.3 9.3 73 25-97 93-174 (177)
5 PF07888 CALCOCO1: Calcium bin 86.7 3 6.5E-05 39.1 7.6 72 27-98 161-236 (546)
6 PF15290 Syntaphilin: Golgi-lo 86.3 4.8 0.0001 35.5 8.1 35 70-108 112-146 (305)
7 TIGR02977 phageshock_pspA phag 84.8 6.9 0.00015 31.3 7.9 70 28-97 43-128 (219)
8 PRK10884 SH3 domain-containing 83.8 4.3 9.4E-05 33.1 6.4 21 34-54 90-110 (206)
9 PF10186 Atg14: UV radiation r 81.3 11 0.00024 29.7 7.8 38 22-59 55-92 (302)
10 TIGR01730 RND_mfp RND family e 79.5 18 0.00039 28.6 8.4 72 22-97 56-131 (322)
11 PF04420 CHD5: CHD5-like prote 78.5 16 0.00034 28.4 7.6 56 34-94 37-92 (161)
12 PF14282 FlxA: FlxA-like prote 77.8 23 0.00051 25.8 8.0 23 29-51 18-40 (106)
13 PRK09578 periplasmic multidrug 77.8 22 0.00048 30.1 8.9 33 22-54 93-125 (385)
14 PF12277 DUF3618: Protein of u 77.7 4.4 9.6E-05 26.0 3.7 24 24-47 4-27 (49)
15 TIGR01843 type_I_hlyD type I s 77.0 20 0.00043 29.6 8.2 25 72-96 200-224 (423)
16 PRK09859 multidrug efflux syst 75.3 28 0.0006 29.5 8.9 66 22-92 91-161 (385)
17 COG2433 Uncharacterized conser 72.6 12 0.00027 35.9 6.7 69 27-95 440-508 (652)
18 PRK11578 macrolide transporter 71.8 34 0.00074 28.7 8.5 33 22-54 91-123 (370)
19 PRK10698 phage shock protein P 71.8 29 0.00064 28.3 7.9 70 28-97 43-128 (222)
20 PRK10884 SH3 domain-containing 71.6 13 0.00029 30.3 5.9 63 27-95 97-159 (206)
21 PRK10559 p-hydroxybenzoic acid 70.1 44 0.00095 27.9 8.8 73 22-95 77-149 (310)
22 PF07798 DUF1640: Protein of u 69.7 15 0.00034 28.5 5.7 28 29-56 72-99 (177)
23 TIGR00999 8a0102 Membrane Fusi 69.0 37 0.00079 26.4 7.6 60 30-96 23-82 (265)
24 PF03961 DUF342: Protein of un 68.9 41 0.0009 29.6 8.7 76 22-97 326-404 (451)
25 PF10267 Tmemb_cc2: Predicted 68.3 34 0.00074 30.9 8.2 29 26-54 215-243 (395)
26 TIGR01843 type_I_hlyD type I s 66.7 47 0.001 27.4 8.2 24 71-94 206-229 (423)
27 PF10186 Atg14: UV radiation r 65.3 24 0.00051 27.9 6.0 32 26-57 73-104 (302)
28 PF06013 WXG100: Proteins of 1 63.9 33 0.00073 21.5 9.1 68 22-94 3-70 (86)
29 TIGR03156 GTP_HflX GTP-binding 63.7 14 0.0003 31.7 4.7 76 22-97 92-176 (351)
30 PRK11637 AmiB activator; Provi 63.2 54 0.0012 28.5 8.3 25 27-51 44-68 (428)
31 TIGR02971 heterocyst_DevB ABC 62.7 56 0.0012 26.7 7.9 24 31-54 98-121 (327)
32 PF06305 DUF1049: Protein of u 62.4 17 0.00038 23.4 4.0 27 68-94 41-67 (68)
33 PRK15030 multidrug efflux syst 62.3 68 0.0015 27.5 8.6 33 22-54 95-127 (397)
34 PF02181 FH2: Formin Homology 62.1 56 0.0012 27.4 7.9 68 20-97 271-338 (370)
35 COG1579 Zn-ribbon protein, pos 62.1 36 0.00079 28.8 6.8 28 27-54 93-120 (239)
36 PRK09039 hypothetical protein; 61.8 46 0.001 28.8 7.6 21 31-51 131-151 (343)
37 COG1579 Zn-ribbon protein, pos 61.1 54 0.0012 27.8 7.6 75 23-97 31-118 (239)
38 PF13851 GAS: Growth-arrest sp 61.0 57 0.0012 26.3 7.5 28 27-54 31-58 (201)
39 PF03449 GreA_GreB_N: Transcri 60.4 41 0.0009 23.3 5.8 53 35-97 7-68 (74)
40 PF10458 Val_tRNA-synt_C: Valy 60.1 18 0.00038 24.1 3.8 14 79-92 50-63 (66)
41 TIGR03185 DNA_S_dndD DNA sulfu 59.2 62 0.0013 29.8 8.3 74 27-100 213-294 (650)
42 PRK03598 putative efflux pump 59.1 76 0.0017 26.1 8.1 32 68-99 145-176 (331)
43 PRK11556 multidrug efflux syst 59.0 78 0.0017 27.6 8.5 33 22-54 117-149 (415)
44 PF10845 DUF2576: Protein of u 59.0 13 0.00028 24.9 2.9 23 20-42 8-30 (48)
45 PRK10476 multidrug resistance 58.8 89 0.0019 26.0 8.5 29 68-96 152-180 (346)
46 COG1315 Uncharacterized conser 56.5 69 0.0015 30.5 8.2 77 19-97 400-483 (543)
47 PF05615 THOC7: Tho complex su 54.5 30 0.00066 25.6 4.6 31 27-57 85-115 (139)
48 KOG3990|consensus 54.4 81 0.0018 28.0 7.8 38 24-61 219-256 (305)
49 PF04012 PspA_IM30: PspA/IM30 52.9 1.1E+02 0.0023 24.0 7.7 70 28-97 42-127 (221)
50 PF07888 CALCOCO1: Calcium bin 52.1 43 0.00093 31.7 6.1 20 74-93 384-403 (546)
51 COG1842 PspA Phage shock prote 51.8 88 0.0019 26.0 7.4 71 27-97 42-128 (225)
52 TIGR03042 PS_II_psbQ_bact phot 51.6 25 0.00054 27.8 3.9 35 12-46 18-59 (142)
53 PF08776 VASP_tetra: VASP tetr 50.7 27 0.0006 22.6 3.3 25 24-54 4-28 (40)
54 PF03962 Mnd1: Mnd1 family; I 50.6 1.3E+02 0.0028 24.1 10.6 46 68-121 103-148 (188)
55 PF10805 DUF2730: Protein of u 48.2 1E+02 0.0023 22.4 7.1 57 21-94 33-91 (106)
56 PRK15136 multidrug efflux syst 48.1 1.6E+02 0.0034 25.5 8.6 34 68-101 158-191 (390)
57 PRK11637 AmiB activator; Provi 48.0 1.3E+02 0.0027 26.3 8.1 35 20-54 44-78 (428)
58 PF12718 Tropomyosin_1: Tropom 47.8 64 0.0014 24.7 5.6 33 27-59 4-36 (143)
59 COG4026 Uncharacterized protei 45.4 57 0.0012 28.6 5.4 98 22-122 102-212 (290)
60 TIGR01461 greB transcription e 45.0 63 0.0014 25.1 5.2 24 74-97 44-67 (156)
61 PF04156 IncA: IncA protein; 44.7 95 0.0021 23.6 6.1 40 20-59 66-110 (191)
62 cd00089 HR1 Protein kinase C-r 44.2 78 0.0017 21.1 5.0 57 37-96 9-70 (72)
63 KOG0999|consensus 44.2 75 0.0016 31.1 6.5 61 37-97 107-178 (772)
64 PHA02562 46 endonuclease subun 43.7 95 0.0021 27.2 6.6 70 28-98 172-243 (562)
65 PRK04863 mukB cell division pr 43.6 1.4E+02 0.003 31.3 8.6 76 22-97 931-1021(1486)
66 PRK15396 murein lipoprotein; P 42.8 46 0.00099 23.8 3.8 42 11-55 16-57 (78)
67 PF00170 bZIP_1: bZIP transcri 41.7 78 0.0017 20.6 4.6 25 28-52 38-62 (64)
68 PRK01885 greB transcription el 40.7 79 0.0017 24.5 5.2 53 35-97 8-69 (157)
69 TIGR02168 SMC_prok_B chromosom 40.5 1.8E+02 0.004 27.1 8.3 19 76-94 832-850 (1179)
70 smart00338 BRLZ basic region l 40.3 73 0.0016 20.7 4.3 25 28-52 38-62 (65)
71 PF04977 DivIC: Septum formati 40.3 74 0.0016 20.5 4.3 35 21-55 15-49 (80)
72 PF15070 GOLGA2L5: Putative go 40.3 3.3E+02 0.0071 26.0 10.0 87 26-122 39-126 (617)
73 PF13514 AAA_27: AAA domain 39.9 1.5E+02 0.0032 29.3 7.9 62 22-86 888-951 (1111)
74 TIGR01000 bacteriocin_acc bact 39.4 1.6E+02 0.0035 25.8 7.4 36 22-57 89-124 (457)
75 PF04508 Pox_A_type_inc: Viral 38.9 42 0.0009 19.4 2.5 18 31-48 2-19 (23)
76 PRK09039 hypothetical protein; 38.7 1.1E+02 0.0024 26.5 6.3 25 71-95 126-150 (343)
77 cd01878 HflX HflX subfamily. 38.4 56 0.0012 24.3 3.9 27 27-53 3-29 (204)
78 TIGR00998 8a0101 efflux pump m 38.1 2.2E+02 0.0047 23.1 8.0 25 22-46 72-96 (334)
79 PF04728 LPP: Lipoprotein leuc 37.9 95 0.0021 21.2 4.6 32 25-56 5-36 (56)
80 PF07334 IFP_35_N: Interferon- 37.4 78 0.0017 22.8 4.3 32 27-58 4-35 (76)
81 PF07926 TPR_MLP1_2: TPR/MLP1/ 37.3 1.4E+02 0.003 22.2 5.9 61 32-92 61-122 (132)
82 KOG0018|consensus 36.4 1E+02 0.0022 31.9 6.3 69 32-103 692-760 (1141)
83 PF05082 Rop-like: Rop-like; 36.0 1.5E+02 0.0033 20.8 7.9 58 30-87 2-63 (66)
84 PF08317 Spc7: Spc7 kinetochor 36.0 2.6E+02 0.0055 23.8 7.9 57 29-95 208-264 (325)
85 PF12795 MscS_porin: Mechanose 36.0 1.9E+02 0.0041 23.2 6.9 32 63-96 175-206 (240)
86 COG3937 Uncharacterized conser 35.9 45 0.00099 25.6 3.1 26 29-54 82-107 (108)
87 PRK00888 ftsB cell division pr 35.8 85 0.0018 23.0 4.5 34 23-56 27-60 (105)
88 COG4679 Phage-related protein 35.3 36 0.00079 26.3 2.5 19 29-47 96-114 (116)
89 TIGR01834 PHA_synth_III_E poly 35.1 57 0.0012 28.9 4.0 26 29-54 288-313 (320)
90 PF05103 DivIVA: DivIVA protei 35.1 90 0.002 22.1 4.4 33 22-54 17-49 (131)
91 PF07926 TPR_MLP1_2: TPR/MLP1/ 35.0 1.9E+02 0.0041 21.5 6.5 69 27-96 7-87 (132)
92 PF04740 LXG: LXG domain of WX 34.5 2.1E+02 0.0045 21.9 8.1 74 19-97 91-167 (204)
93 PF09727 CortBP2: Cortactin-bi 34.5 1E+02 0.0022 25.5 5.2 82 29-117 101-190 (192)
94 COG3937 Uncharacterized conser 34.4 41 0.00089 25.8 2.7 22 78-99 86-107 (108)
95 PRK05892 nucleoside diphosphat 33.9 1.5E+02 0.0032 23.1 5.8 24 74-97 46-69 (158)
96 PF12761 End3: Actin cytoskele 33.4 1.8E+02 0.004 24.1 6.5 36 54-89 80-117 (195)
97 smart00787 Spc7 Spc7 kinetocho 33.1 2.8E+02 0.0061 24.0 7.8 24 73-96 237-260 (312)
98 TIGR03007 pepcterm_ChnLen poly 33.0 2.2E+02 0.0047 24.9 7.2 60 37-96 168-232 (498)
99 PF13015 PRKCSH_1: Glucosidase 32.6 47 0.001 26.0 2.8 25 73-97 1-25 (154)
100 PF12700 HlyD_2: HlyD family s 32.4 2.1E+02 0.0047 22.6 6.5 75 22-96 50-139 (328)
101 PRK03918 chromosome segregatio 32.2 3.7E+02 0.008 25.1 8.9 26 29-54 625-650 (880)
102 KOG0995|consensus 32.0 3.3E+02 0.0072 26.3 8.6 37 67-103 331-367 (581)
103 PF08606 Prp19: Prp19/Pso4-lik 31.8 89 0.0019 22.3 3.8 52 30-87 15-69 (70)
104 PF02183 HALZ: Homeobox associ 31.7 1.3E+02 0.0027 19.3 4.2 31 24-54 6-36 (45)
105 PF09177 Syntaxin-6_N: Syntaxi 31.5 74 0.0016 22.3 3.4 25 26-50 73-97 (97)
106 PF05055 DUF677: Protein of un 31.3 1.1E+02 0.0024 26.9 5.1 82 27-115 254-335 (336)
107 PF05557 MAD: Mitotic checkpoi 31.2 16 0.00035 34.1 0.0 26 29-54 60-85 (722)
108 PF11180 DUF2968: Protein of u 31.1 1.5E+02 0.0032 24.7 5.5 28 27-54 116-143 (192)
109 PRK00888 ftsB cell division pr 30.1 92 0.002 22.8 3.8 30 26-55 37-66 (105)
110 TIGR01462 greA transcription e 29.5 1.9E+02 0.004 22.0 5.5 23 75-97 42-64 (151)
111 PF11221 Med21: Subunit 21 of 29.3 1.2E+02 0.0026 23.0 4.5 32 80-122 102-133 (144)
112 PF02403 Seryl_tRNA_N: Seryl-t 29.3 1.6E+02 0.0034 20.6 4.8 34 23-56 67-100 (108)
113 TIGR01005 eps_transp_fam exopo 29.1 2.4E+02 0.0053 26.2 7.2 26 73-98 343-368 (754)
114 PF05384 DegS: Sensor protein 28.9 2.6E+02 0.0057 22.2 6.5 22 33-54 23-44 (159)
115 KOG4302|consensus 28.9 4.9E+02 0.011 25.4 9.3 69 30-98 54-140 (660)
116 PRK14900 valS valyl-tRNA synth 28.9 2.2E+02 0.0048 28.5 7.2 65 28-96 840-905 (1052)
117 TIGR02420 dksA RNA polymerase- 28.5 2.3E+02 0.005 20.4 8.8 67 31-97 5-78 (110)
118 KOG2185|consensus 28.3 1.9E+02 0.0041 27.2 6.3 64 28-98 411-474 (486)
119 TIGR00998 8a0101 efflux pump m 28.0 3.3E+02 0.0071 22.1 8.0 21 69-89 147-167 (334)
120 KOG4643|consensus 27.6 1.7E+02 0.0037 30.4 6.2 109 13-132 155-295 (1195)
121 PF14362 DUF4407: Domain of un 27.4 3.5E+02 0.0076 22.2 8.8 62 28-91 140-205 (301)
122 PF04108 APG17: Autophagy prot 27.2 2.2E+02 0.0047 25.2 6.3 10 96-105 400-409 (412)
123 PF09969 DUF2203: Uncharacteri 27.2 82 0.0018 23.7 3.2 12 42-53 25-36 (120)
124 PF10473 CENP-F_leu_zip: Leuci 27.1 3.1E+02 0.0067 21.5 7.3 52 28-96 15-66 (140)
125 PHA02562 46 endonuclease subun 26.6 2.9E+02 0.0063 24.2 6.9 26 30-55 255-280 (562)
126 COG1196 Smc Chromosome segrega 26.5 4.2E+02 0.0091 26.5 8.6 30 28-57 672-701 (1163)
127 PF00038 Filament: Intermediat 26.3 3.6E+02 0.0078 22.0 7.8 63 23-95 47-109 (312)
128 COG2357 PpGpp synthetase catal 26.1 1.3E+02 0.0028 25.7 4.5 35 20-54 173-210 (231)
129 PF11559 ADIP: Afadin- and alp 25.9 2.8E+02 0.0061 20.6 7.9 27 23-49 66-92 (151)
130 PF07106 TBPIP: Tat binding pr 25.8 3E+02 0.0065 20.9 9.4 66 23-96 72-137 (169)
131 TIGR03185 DNA_S_dndD DNA sulfu 25.6 5.2E+02 0.011 23.9 8.6 24 30-53 391-414 (650)
132 PF05924 SAMP: SAMP Motif; In 25.4 40 0.00088 19.0 0.9 16 116-131 2-19 (20)
133 KOG0977|consensus 25.3 5.6E+02 0.012 24.5 8.9 76 21-96 33-120 (546)
134 PF12128 DUF3584: Protein of u 25.2 4.6E+02 0.0099 26.4 8.7 32 23-54 600-631 (1201)
135 PRK09973 putative outer membra 25.1 1.3E+02 0.0027 22.1 3.8 42 11-55 15-56 (85)
136 PF04912 Dynamitin: Dynamitin 25.1 67 0.0015 27.8 2.7 26 31-56 88-113 (388)
137 PF13239 2TM: 2TM domain 24.9 58 0.0013 22.3 1.9 14 76-89 1-14 (83)
138 PF05335 DUF745: Protein of un 24.5 99 0.0022 25.2 3.4 28 30-57 144-171 (188)
139 PF02050 FliJ: Flagellar FliJ 24.4 2.2E+02 0.0047 18.8 8.9 69 26-96 1-73 (123)
140 TIGR00219 mreC rod shape-deter 24.4 1.2E+02 0.0026 25.5 4.1 16 76-91 92-107 (283)
141 KOG4196|consensus 24.1 1.7E+02 0.0037 23.3 4.6 18 37-54 88-105 (135)
142 PF05278 PEARLI-4: Arabidopsis 24.1 4.8E+02 0.01 22.7 8.3 30 68-97 214-243 (269)
143 TIGR03007 pepcterm_ChnLen poly 23.7 4.3E+02 0.0093 23.1 7.4 66 28-93 315-380 (498)
144 PF06148 COG2: COG (conserved 23.6 58 0.0013 23.9 1.8 47 21-70 11-67 (133)
145 PRK09841 cryptic autophosphory 23.3 5.7E+02 0.012 24.1 8.5 28 35-62 272-301 (726)
146 PRK11519 tyrosine kinase; Prov 23.2 5.3E+02 0.011 24.3 8.3 27 35-61 272-300 (719)
147 TIGR02209 ftsL_broad cell divi 22.9 1.1E+02 0.0023 20.4 2.9 35 20-54 21-55 (85)
148 PF08647 BRE1: BRE1 E3 ubiquit 22.8 2.9E+02 0.0062 19.7 6.4 60 27-89 21-80 (96)
149 PRK09578 periplasmic multidrug 22.8 3E+02 0.0064 23.3 6.1 33 26-61 104-136 (385)
150 PF12752 SUZ: SUZ domain; Int 22.6 55 0.0012 21.5 1.4 10 76-85 46-55 (59)
151 PF02185 HR1: Hr1 repeat; Int 22.6 1.8E+02 0.0039 19.2 3.9 56 38-97 2-62 (70)
152 PF04880 NUDE_C: NUDE protein, 22.4 45 0.00097 26.9 1.1 32 27-58 18-52 (166)
153 PRK09413 IS2 repressor TnpA; R 22.2 1.6E+02 0.0035 21.3 3.9 24 32-55 73-96 (121)
154 PF08537 NBP1: Fungal Nap bind 22.1 1.2E+02 0.0026 27.1 3.7 59 27-90 179-241 (323)
155 PF14193 DUF4315: Domain of un 22.1 1.4E+02 0.003 21.5 3.5 25 72-96 5-29 (83)
156 PRK10869 recombination and rep 22.1 3E+02 0.0064 25.4 6.3 76 21-96 257-338 (553)
157 PF03961 DUF342: Protein of un 22.1 2.3E+02 0.005 25.0 5.5 69 26-94 337-408 (451)
158 COG4372 Uncharacterized protei 22.0 5.9E+02 0.013 24.1 8.2 78 20-97 71-166 (499)
159 PF06818 Fez1: Fez1; InterPro 22.0 2.2E+02 0.0047 23.8 5.0 29 28-56 78-106 (202)
160 PF13514 AAA_27: AAA domain 21.8 5.3E+02 0.011 25.6 8.3 32 61-92 840-871 (1111)
161 KOG4687|consensus 21.7 5E+02 0.011 23.6 7.5 44 69-123 145-190 (389)
162 PF10805 DUF2730: Protein of u 21.6 3.2E+02 0.007 19.8 8.1 26 29-54 34-59 (106)
163 PF02344 Myc-LZ: Myc leucine z 21.4 2.1E+02 0.0046 17.8 3.7 27 25-51 3-29 (32)
164 PF00261 Tropomyosin: Tropomyo 21.4 2.9E+02 0.0063 22.3 5.6 72 26-97 123-212 (237)
165 PF09738 DUF2051: Double stran 21.3 5.5E+02 0.012 22.4 9.0 54 40-96 115-168 (302)
166 TIGR01005 eps_transp_fam exopo 21.2 4.8E+02 0.01 24.3 7.6 60 36-95 200-264 (754)
167 PF07716 bZIP_2: Basic region 21.2 2.3E+02 0.005 17.9 4.3 17 36-52 31-47 (54)
168 PF10498 IFT57: Intra-flagella 21.1 5.9E+02 0.013 22.6 7.9 44 42-97 306-350 (359)
169 PRK10803 tol-pal system protei 20.7 1.5E+02 0.0033 24.6 3.9 23 28-50 66-88 (263)
170 COG5415 Predicted integral mem 20.5 1.5E+02 0.0033 25.6 3.9 30 68-97 15-44 (251)
171 PF12128 DUF3584: Protein of u 20.4 6.8E+02 0.015 25.3 8.8 83 20-111 460-542 (1201)
172 KOG4460|consensus 20.3 3.7E+02 0.0079 26.6 6.7 82 26-114 580-668 (741)
173 PF08700 Vps51: Vps51/Vps67; 20.1 2.7E+02 0.0059 18.4 5.2 35 20-54 3-43 (87)
174 PF04048 Sec8_exocyst: Sec8 ex 20.1 3.9E+02 0.0083 20.1 7.5 55 27-88 76-130 (142)
No 1
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=88.55 E-value=0.92 Score=34.42 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=35.5
Q ss_pred CCCCCCCccCh-HHHHHHHHHHHHhHHHHHHHHHHHHHhHhH
Q psy16169 15 SSSSASTKYDV-DLLKSDVALARDRVSRLKRELEQIRTEMNY 55 (139)
Q Consensus 15 ~sSs~stKyDP-d~lkaeia~ar~Rv~rLKrEl~q~~~El~y 55 (139)
+++|++.+||| -.++++|..-+.|+..||-.+.+.++++.+
T Consensus 36 ~s~~sp~~f~~~~ege~~~qkL~eqteeLK~kvqe~sk~i~~ 77 (106)
T PF12443_consen 36 DSSGSPGIFDKIREGEQMIQKLGEQTEELKDKVQEFSKRIEQ 77 (106)
T ss_pred CCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 33446789999 799999999999999999999999888764
No 2
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.09 E-value=4.9 Score=35.31 Aligned_cols=73 Identities=22% Similarity=0.363 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh--------Hhc-----c-CcCCCCC--cHHHHHHHHHhHHHHHHHHHHH
Q psy16169 24 DVDLLKSDVALARDRVSRLKRELEQIRTEMN--------YTQ-----R-GLVPMGT--RLAEMARMRLEYDETRKRIQII 87 (139)
Q Consensus 24 DPd~lkaeia~ar~Rv~rLKrEl~q~~~El~--------yke-----~-G~~~~~~--~LaEkvRl~lqYeEArkrv~~i 87 (139)
+-..|-..+..+|++...|+.|+..++|.+. +++ + |+...++ ..-|+..+-.|.|.+++++.+|
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 3456777889999999999999999998874 111 1 1222222 2279999999999999999999
Q ss_pred HHHHHhhhh
Q psy16169 88 QTQLADLEE 96 (139)
Q Consensus 88 q~qLa~le~ 96 (139)
+..+..+-+
T Consensus 146 e~d~qs~lD 154 (319)
T PF09789_consen 146 ERDLQSLLD 154 (319)
T ss_pred HHHHHHHHH
Confidence 998876544
No 3
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.99 E-value=8.2 Score=29.32 Aligned_cols=71 Identities=21% Similarity=0.419 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhH---HHHHHHHHHHHHHHHhhhhccCCCCc
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEY---DETRKRIQIIQTQLADLEEKVTPGQA 103 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqY---eEArkrv~~iq~qLa~le~e~wPG~~ 103 (139)
++-.|+++.+.++.+|..+=..+..|+ ++|-..- ....+++..++.++++|+.+-
T Consensus 27 ~~E~E~~~l~~el~~l~~~r~~l~~Ei-----------------v~l~~~~e~~~~~~~~~~~L~~el~~l~~ry----- 84 (120)
T PF12325_consen 27 RLEGELASLQEELARLEAERDELREEI-----------------VKLMEENEELRALKKEVEELEQELEELQQRY----- 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 345677777777777777777777765 3444444 444566888888888888731
Q ss_pred cCCcchhhhhHHHHHHHhh
Q psy16169 104 ESDKDRLILFQEKEQLLRS 122 (139)
Q Consensus 104 e~drDrL~Li~EKE~LL~E 122 (139)
-.-|.|+-||.+...|
T Consensus 85 ---~t~LellGEK~E~veE 100 (120)
T PF12325_consen 85 ---QTLLELLGEKSEEVEE 100 (120)
T ss_pred ---HHHHHHhcchHHHHHH
Confidence 1238999999999888
No 4
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.91 E-value=9.3 Score=29.34 Aligned_cols=73 Identities=23% Similarity=0.408 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhHh---------HhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 25 VDLLKSDVALARDRVSRLKRELEQIRTEMN---------YTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 25 Pd~lkaeia~ar~Rv~rLKrEl~q~~~El~---------yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le 95 (139)
-..++.+|+.....+.+++.++.+++.+-. -.+.|++....=+.|..+..-.+++-++.|..++...+.++
T Consensus 93 ~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 93 LERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888887778888877777777644 22345554444445788888888888888888888877776
Q ss_pred hc
Q psy16169 96 EK 97 (139)
Q Consensus 96 ~e 97 (139)
..
T Consensus 173 ~~ 174 (177)
T PF13870_consen 173 MR 174 (177)
T ss_pred Hh
Confidence 53
No 5
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=86.73 E-value=3 Score=39.07 Aligned_cols=72 Identities=29% Similarity=0.412 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhHh---ccCcCCCCCc-HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhcc
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMNYT---QRGLVPMGTR-LAEMARMRLEYDETRKRIQIIQTQLADLEEKV 98 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~yk---e~G~~~~~~~-LaEkvRl~lqYeEArkrv~~iq~qLa~le~e~ 98 (139)
.|+.++...+.+|.+|+.+|.+.+.++.-= .+++...... -.|..-|..++++++.||..+...+..+..+.
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777766665411 1112211112 25677888999999999999999999888766
No 6
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=86.27 E-value=4.8 Score=35.52 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=26.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhccCCCCccCCcc
Q psy16169 70 MARMRLEYDETRKRIQIIQTQLADLEEKVTPGQAESDKD 108 (139)
Q Consensus 70 kvRl~lqYeEArkrv~~iq~qLa~le~e~wPG~~e~drD 108 (139)
+|...|-..||||.|+.|++-+.-.-+ .++|.|++
T Consensus 112 RVEAQLALKEARkEIkQLkQvieTmrs----sL~ekDkG 146 (305)
T PF15290_consen 112 RVEAQLALKEARKEIKQLKQVIETMRS----SLAEKDKG 146 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----hhchhhhh
Confidence 788888999999999999987655443 44454544
No 7
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=84.82 E-value=6.9 Score=31.35 Aligned_cols=70 Identities=16% Similarity=0.293 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHh-HhccC---cCCCCCcHHHH------------HHHHHhHHHHHHHHHHHHHHH
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTEMN-YTQRG---LVPMGTRLAEM------------ARMRLEYDETRKRIQIIQTQL 91 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~El~-yke~G---~~~~~~~LaEk------------vRl~lqYeEArkrv~~iq~qL 91 (139)
.+..++.+...-.++++++.+...... |..+. +-.+...||.. .+|.-+|+..+..|..++.+|
T Consensus 43 ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l 122 (219)
T TIGR02977 43 VRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDI 122 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666666665 33333 34455555543 467778888888899999888
Q ss_pred Hhhhhc
Q psy16169 92 ADLEEK 97 (139)
Q Consensus 92 a~le~e 97 (139)
..|+.+
T Consensus 123 ~~L~~k 128 (219)
T TIGR02977 123 AKLQAK 128 (219)
T ss_pred HHHHHH
Confidence 888774
No 8
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.80 E-value=4.3 Score=33.13 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=12.3
Q ss_pred HHHHhHHHHHHHHHHHHHhHh
Q psy16169 34 LARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 34 ~ar~Rv~rLKrEl~q~~~El~ 54 (139)
.++.|+.+|.+|++..+.+|.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~ 110 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLN 110 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655554
No 9
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.33 E-value=11 Score=29.74 Aligned_cols=38 Identities=21% Similarity=0.498 Sum_probs=30.3
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccC
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRG 59 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G 59 (139)
.-.-..++.++...+.|+..|+.++.+++.++.-+...
T Consensus 55 ~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~ 92 (302)
T PF10186_consen 55 LLEIQQLKREIEELRERLERLRERIERLRKRIEQKRER 92 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788889999999999998888888888766655
No 10
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=79.49 E-value=18 Score=28.57 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=46.8
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh----HhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMN----YTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~----yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e 97 (139)
.+|...+..++..++..+..++.++...+.++. ..+.|..+ -.+.-....+|+.++..+...+.+|..+...
T Consensus 56 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s----~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 131 (322)
T TIGR01730 56 RLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVS----QADLDDAKAAVEAAQADLEAAKASLASAQLN 131 (322)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777888877777777777777777666554 12234322 3455566677777777777777776666543
No 11
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=78.48 E-value=16 Score=28.38 Aligned_cols=56 Identities=16% Similarity=0.353 Sum_probs=42.8
Q ss_pred HHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy16169 34 LARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADL 94 (139)
Q Consensus 34 ~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~l 94 (139)
..-.....|+.|+.+++.|+. -.|.....|.-+|++-+.+.+.+.++.++.++..-
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~-----~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELN-----AISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----TS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778888888887775 35677899999999999999998888888876543
No 12
>PF14282 FlxA: FlxA-like protein
Probab=77.81 E-value=23 Score=25.78 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=14.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q psy16169 29 KSDVALARDRVSRLKRELEQIRT 51 (139)
Q Consensus 29 kaeia~ar~Rv~rLKrEl~q~~~ 51 (139)
-..|+.-+.++..|..+|..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566666777777777666554
No 13
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=77.80 E-value=22 Score=30.09 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=27.6
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
+.||..+.++++.++..+.+.+-++...+.++.
T Consensus 93 ~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~ 125 (385)
T PRK09578 93 RIDPAPLKAARDAAAGALAKAEAAHLAALDKRR 125 (385)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999888888888877777655
No 14
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=77.73 E-value=4.4 Score=25.99 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHH
Q psy16169 24 DVDLLKSDVALARDRVSRLKRELE 47 (139)
Q Consensus 24 DPd~lkaeia~ar~Rv~rLKrEl~ 47 (139)
||+.|.+||..+|.++...=.+|.
T Consensus 4 ~~~~ie~dIe~tR~~La~tvd~L~ 27 (49)
T PF12277_consen 4 SPDEIERDIERTRAELAETVDELA 27 (49)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999988776664
No 15
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=77.03 E-value=20 Score=29.63 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=13.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 72 RMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 72 Rl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
....+|.+++..++..+.+++.+..
T Consensus 200 ~~~~~~~~~~~~l~~~~~~l~~~~~ 224 (423)
T TIGR01843 200 ELERERAEAQGELGRLEAELEVLKR 224 (423)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4455566666666665555555433
No 16
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=75.32 E-value=28 Score=29.54 Aligned_cols=66 Identities=12% Similarity=0.252 Sum_probs=42.7
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh-----HhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMN-----YTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLA 92 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~-----yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa 92 (139)
+.||..++++++.|+..+...+-++...+.++. |+ +|.++. .+.-..+.+|+.|+..++..+.+|.
T Consensus 91 ~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~-~~~is~----~~~d~a~~~~~~a~a~~~~a~a~l~ 161 (385)
T PRK09859 91 QIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLK-TNYVSR----QDYDTARTQLNEAEANVTVAKAAVE 161 (385)
T ss_pred EECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcCH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999888777776666554 33 354433 2333445566666655555554443
No 17
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=72.64 E-value=12 Score=35.95 Aligned_cols=69 Identities=26% Similarity=0.426 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le 95 (139)
-|+++|...+.=+..|+++|++++-++.-+.+----...+.-+..+|+..+.|.+++|..|...|+.+.
T Consensus 440 ~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 440 ELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666677777776666633221011112234567899999999999999999988877
No 18
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=71.80 E-value=34 Score=28.73 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=22.6
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
.+||..+.++++.++..+..++.++.+.+.++.
T Consensus 91 ~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~ 123 (370)
T PRK11578 91 VIDPEQAENQIKEVEATLMELRAQRQQAEAELK 123 (370)
T ss_pred EECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689998888887777666666666655554444
No 19
>PRK10698 phage shock protein PspA; Provisional
Probab=71.76 E-value=29 Score=28.25 Aligned_cols=70 Identities=21% Similarity=0.305 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHh-HhccC---cCCCCCcHHHH------------HHHHHhHHHHHHHHHHHHHHH
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTEMN-YTQRG---LVPMGTRLAEM------------ARMRLEYDETRKRIQIIQTQL 91 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~El~-yke~G---~~~~~~~LaEk------------vRl~lqYeEArkrv~~iq~qL 91 (139)
+|..++.+..--.++.+++.+...+.. |.++. +-.+...||.. ..|.-+|+....-+..++.++
T Consensus 43 ~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l 122 (222)
T PRK10698 43 VRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEI 122 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666666666665 44443 34455556544 467777888888888888888
Q ss_pred Hhhhhc
Q psy16169 92 ADLEEK 97 (139)
Q Consensus 92 a~le~e 97 (139)
..|+.+
T Consensus 123 ~~L~~k 128 (222)
T PRK10698 123 GELENK 128 (222)
T ss_pred HHHHHH
Confidence 888774
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.58 E-value=13 Score=30.28 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le 95 (139)
.+..|++..+..++.+..+..+-..||+-+-.- ... ....|.-++++.+..++.+|.++..|+
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~----~~~--~~~~L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQ----SDS--VINGLKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666655555555555422111 000 011245555555555555555544443
No 21
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=70.12 E-value=44 Score=27.91 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=41.0
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le 95 (139)
+.|+..+.++++.++.++...+..+...+.+..-... +......-.+.-....+|+.|+..++..+.+|+...
T Consensus 77 ~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~-L~~~aiS~~~~d~a~~~~~~a~a~l~~a~a~l~~a~ 149 (310)
T PRK10559 77 TIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNR-LGVQAMSREEIDQANNVLQTVLHQLAKAQATRDLAK 149 (310)
T ss_pred EECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999998887666655555444331110 111111122333344456666666666666555443
No 22
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=69.72 E-value=15 Score=28.49 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=22.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHhHh
Q psy16169 29 KSDVALARDRVSRLKRELEQIRTEMNYT 56 (139)
Q Consensus 29 kaeia~ar~Rv~rLKrEl~q~~~El~yk 56 (139)
|.+++..+....+|++|+.+++++|.+.
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~~~L~~e 99 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLRQELREE 99 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788889999999999998875
No 23
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=69.03 E-value=37 Score=26.39 Aligned_cols=60 Identities=18% Similarity=0.433 Sum_probs=35.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 30 SDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 30 aeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
++++.++..+...++++...+.- | +.|..+ -.+....+-+|+.|+.+++.++.+|+.+..
T Consensus 23 a~l~~a~~~l~~a~~~~~r~~~L--~-~~~~~s----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (265)
T TIGR00999 23 AELKVAQKRVELARKTYEREKKL--F-EQGVIP----RQEFESAEYALEEAQAEVQAAKSELRSARE 82 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--H-HcCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555555555555444433321 2 244432 235566677888999999999888876643
No 24
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=68.87 E-value=41 Score=29.56 Aligned_cols=76 Identities=16% Similarity=0.302 Sum_probs=53.3
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhcc-Cc--CCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQR-GL--VPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~-G~--~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e 97 (139)
.+|-..++.++..-+..+..++.++..++..+.+-+. +. .......+..-++...|.+...+++.++.++..|+++
T Consensus 326 g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 326 GVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5773456667777788888888888888888775444 22 3334455667777788888888888888877777654
No 25
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=68.33 E-value=34 Score=30.88 Aligned_cols=29 Identities=14% Similarity=0.368 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
.-+..|+...|..+.+|..++..++..++
T Consensus 215 ~~~~~el~eik~~~~~L~~~~e~Lk~~~~ 243 (395)
T PF10267_consen 215 QKILEELREIKESQSRLEESIEKLKEQYQ 243 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999998887776443
No 26
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=66.72 E-value=47 Score=27.44 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=11.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhh
Q psy16169 71 ARMRLEYDETRKRIQIIQTQLADL 94 (139)
Q Consensus 71 vRl~lqYeEArkrv~~iq~qLa~l 94 (139)
..+.-++.+++..++..+.++..+
T Consensus 206 ~~~~~~l~~~~~~l~~~~~~l~~~ 229 (423)
T TIGR01843 206 AEAQGELGRLEAELEVLKRQIDEL 229 (423)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334444455555544444444433
No 27
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=65.33 E-value=24 Score=27.91 Aligned_cols=32 Identities=19% Similarity=0.450 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhc
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIRTEMNYTQ 57 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~~El~yke 57 (139)
..|+.+|...+.++...|+++...+..+.-+.
T Consensus 73 ~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 73 ERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555443
No 28
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=63.95 E-value=33 Score=21.47 Aligned_cols=68 Identities=15% Similarity=0.254 Sum_probs=46.6
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADL 94 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~l 94 (139)
++||+.|.+=+.....-...|+..+.+++..+.+-..++- +...- -..-.|.++...+..+...|..+
T Consensus 3 ~vd~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~-G~a~~----af~~~~~~~~~~~~~~~~~L~~~ 70 (86)
T PF06013_consen 3 KVDPEQLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQ-GEAAD----AFQDKFEEWNQAFRQLNEALEEL 70 (86)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBT-SSTSH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999998844432 33332 12233444444444444444443
No 29
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=63.70 E-value=14 Score=31.72 Aligned_cols=76 Identities=25% Similarity=0.302 Sum_probs=48.7
Q ss_pred ccChHHHHHHH--HHHHHhHHHHHHHHHHHHHhHhHhccC---c----CCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16169 22 KYDVDLLKSDV--ALARDRVSRLKRELEQIRTEMNYTQRG---L----VPMGTRLAEMARMRLEYDETRKRIQIIQTQLA 92 (139)
Q Consensus 22 KyDPd~lkaei--a~ar~Rv~rLKrEl~q~~~El~yke~G---~----~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa 92 (139)
-+|--.|.=|| ..|++|=.+|+-||+|++-++.-.-.+ + .-.+++-++--.+-..+...++||+.|+.+|.
T Consensus 92 v~Dr~~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~~~g~gE~~~~~~~~~i~~ri~~l~~~L~ 171 (351)
T TIGR03156 92 VIDRTGLILDIFAQRARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIGTRGPGETQLETDRRLIRERIAQLKKELE 171 (351)
T ss_pred ccchHHHHHHHHHHhccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666 467788888888888888877633321 0 11112222222234556778899999999999
Q ss_pred hhhhc
Q psy16169 93 DLEEK 97 (139)
Q Consensus 93 ~le~e 97 (139)
++...
T Consensus 172 ~~~~~ 176 (351)
T TIGR03156 172 KVEKQ 176 (351)
T ss_pred HHHHH
Confidence 88764
No 30
>PRK11637 AmiB activator; Provisional
Probab=63.20 E-value=54 Score=28.52 Aligned_cols=25 Identities=4% Similarity=0.106 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRT 51 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~ 51 (139)
.++.++...+..+..++.++.+++.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~ 68 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQ 68 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 31
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=62.66 E-value=56 Score=26.66 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=10.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 31 DVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 31 eia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
++..++..+..++.++...+.++.
T Consensus 98 ~~~~~~~~~~~~~~~l~~a~~~~~ 121 (327)
T TIGR02971 98 DVAAQQATLNRLEAELETAQREVD 121 (327)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 32
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=62.43 E-value=17 Score=23.38 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=20.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy16169 68 AEMARMRLEYDETRKRIQIIQTQLADL 94 (139)
Q Consensus 68 aEkvRl~lqYeEArkrv~~iq~qLa~l 94 (139)
....|+++++...+|+++.++.+++++
T Consensus 41 ~~~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 41 PSRLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445777888888888888888877764
No 33
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=62.26 E-value=68 Score=27.48 Aligned_cols=33 Identities=9% Similarity=0.142 Sum_probs=28.7
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
..||..+++.++.|+..+.+.+-++.+.+.++.
T Consensus 95 ~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~ 127 (397)
T PRK15030 95 QIDPATYQATYDSAKGDLAKAQAAANIAQLTVN 127 (397)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999988888888887765
No 34
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=62.15 E-value=56 Score=27.39 Aligned_cols=68 Identities=22% Similarity=0.345 Sum_probs=49.6
Q ss_pred CCccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 20 STKYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 20 stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e 97 (139)
.++.|.+.|.++|..-+..+..++.++..... + ...... =...|.--|+++..++..++..+.++++.
T Consensus 271 a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~-------~-~~~~~~--f~~~~~~f~~~~~~~~~~l~~~~~~~~~~ 338 (370)
T PF02181_consen 271 ASKVSLDELEQDIKELEKGLEKIKKELEAIEK-------D-EEDDDK--FKEKMKEFLEEAETKLDELQELYEELEEA 338 (370)
T ss_dssp CCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCT-------T-SSTT-T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc-------c-ccchhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999998888888888888877665 1 111222 24567778899999999999988888764
No 35
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=62.05 E-value=36 Score=28.81 Aligned_cols=28 Identities=25% Similarity=0.580 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
.|..|+..++.|...|..||.++..++.
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~ 120 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIE 120 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888777777776654
No 36
>PRK09039 hypothetical protein; Validated
Probab=61.80 E-value=46 Score=28.80 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=8.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q psy16169 31 DVALARDRVSRLKRELEQIRT 51 (139)
Q Consensus 31 eia~ar~Rv~rLKrEl~q~~~ 51 (139)
+++.+...|.+|+++++.++.
T Consensus 131 ~~se~~~~V~~L~~qI~aLr~ 151 (343)
T PRK09039 131 VSARALAQVELLNQQIAALRR 151 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 333333444444444444433
No 37
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=61.11 E-value=54 Score=27.80 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=51.9
Q ss_pred cChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh--------HhccC-----cCCCCCcHHHHHHHHHhHHHHHHHHHHHHH
Q psy16169 23 YDVDLLKSDVALARDRVSRLKRELEQIRTEMN--------YTQRG-----LVPMGTRLAEMARMRLEYDETRKRIQIIQT 89 (139)
Q Consensus 23 yDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~--------yke~G-----~~~~~~~LaEkvRl~lqYeEArkrv~~iq~ 89 (139)
++-+.+++|+..++.++..+.-++..++.++. -.++. ..+..++.-+.--|.-.-+.|++++.++..
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~ 110 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLED 110 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788888888888887777777766554 11111 135666666667777778888888888888
Q ss_pred HHHhhhhc
Q psy16169 90 QLADLEEK 97 (139)
Q Consensus 90 qLa~le~e 97 (139)
+|+.+.++
T Consensus 111 el~~l~~~ 118 (239)
T COG1579 111 ELAELMEE 118 (239)
T ss_pred HHHHHHHH
Confidence 88777764
No 38
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=61.00 E-value=57 Score=26.26 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
-||.||+..|.+-.+.+++|..+.+|-.
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~ 58 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENK 58 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999998888854
No 39
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=60.40 E-value=41 Score=23.31 Aligned_cols=53 Identities=23% Similarity=0.476 Sum_probs=35.6
Q ss_pred HHHhHHHHHHHHHHHHH-hHh--------HhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 35 ARDRVSRLKRELEQIRT-EMN--------YTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 35 ar~Rv~rLKrEl~q~~~-El~--------yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e 97 (139)
++.-..+|+.||..++. +.. -.++|=.+. |-.|+.||.+...+...+..|+..
T Consensus 7 T~~g~~~L~~EL~~L~~~~rpe~~~~i~~Ar~~GDlsE----------NaeY~aAke~q~~le~rI~~Le~~ 68 (74)
T PF03449_consen 7 TPEGYEKLQAELEHLKNVERPEIAEEIAEAREQGDLSE----------NAEYHAAKERQAFLEARIRELEER 68 (74)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTS----------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCccc----------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777554 222 455552222 457999999999999999998864
No 40
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=60.13 E-value=18 Score=24.12 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q psy16169 79 ETRKRIQIIQTQLA 92 (139)
Q Consensus 79 EArkrv~~iq~qLa 92 (139)
+....++.|+..|+
T Consensus 50 ~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 50 ELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 41
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=59.19 E-value=62 Score=29.82 Aligned_cols=74 Identities=19% Similarity=0.324 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhHhcc---C----c-CCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhcc
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMNYTQR---G----L-VPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEKV 98 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~---G----~-~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e~ 98 (139)
.+.+++.....++..+..++.+++.++.--+. . | ..+|..+.++..+..+-++++.+......++.++-+..
T Consensus 213 ~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~ 292 (650)
T TIGR03185 213 ALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADP 292 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444444444444444444444444331111 1 3 34566667789999999999999999999999888765
Q ss_pred CC
Q psy16169 99 TP 100 (139)
Q Consensus 99 wP 100 (139)
-|
T Consensus 293 ~p 294 (650)
T TIGR03185 293 LP 294 (650)
T ss_pred CC
Confidence 44
No 42
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=59.14 E-value=76 Score=26.14 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=22.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhccC
Q psy16169 68 AEMARMRLEYDETRKRIQIIQTQLADLEEKVT 99 (139)
Q Consensus 68 aEkvRl~lqYeEArkrv~~iq~qLa~le~e~w 99 (139)
.+.-.....|+.|+..+...+.++..+....+
T Consensus 145 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 176 (331)
T PRK03598 145 NDLENARSSRDQAQATLKSAQDKLSQYREGNR 176 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 45566677788888888888888877765443
No 43
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=58.96 E-value=78 Score=27.56 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=29.2
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
++||..+.+++++++.-+.+.+-+|...+.++.
T Consensus 117 ~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~ 149 (415)
T PRK11556 117 EIDPRPFKVALAQAQGQLAKDQATLANARRDLA 149 (415)
T ss_pred EECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999988888888888875
No 44
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=58.95 E-value=13 Score=24.94 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=18.3
Q ss_pred CCccChHHHHHHHHHHHHhHHHH
Q psy16169 20 STKYDVDLLKSDVALARDRVSRL 42 (139)
Q Consensus 20 stKyDPd~lkaeia~ar~Rv~rL 42 (139)
.--||-+|||.|+..-|.-|..|
T Consensus 8 ~~dydreqlrrelnsLR~~vhel 30 (48)
T PF10845_consen 8 QHDYDREQLRRELNSLRRSVHEL 30 (48)
T ss_pred ccccCHHHHHHHHHHHHHHHHHH
Confidence 34799999999998877766654
No 45
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=58.84 E-value=89 Score=26.00 Aligned_cols=29 Identities=7% Similarity=0.054 Sum_probs=18.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 68 AEMARMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 68 aEkvRl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
.+.-....+|+.|+..++..+.++.....
T Consensus 152 ~~~~~a~~~~~~a~~~l~~a~~~~~~~~~ 180 (346)
T PRK10476 152 QQVDQARTAQRDAEVSLNQALLQAQAAAA 180 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777777777666554
No 46
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=56.48 E-value=69 Score=30.49 Aligned_cols=77 Identities=18% Similarity=0.275 Sum_probs=54.7
Q ss_pred CCCccChH------HHHHHHHHHHHhHHHHHHHHHHHHH-hHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16169 19 ASTKYDVD------LLKSDVALARDRVSRLKRELEQIRT-EMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQL 91 (139)
Q Consensus 19 ~stKyDPd------~lkaeia~ar~Rv~rLKrEl~q~~~-El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qL 91 (139)
...=|||+ .|.+++...++||.+|..-|.-.+. ++-.++.+|.+++-- +.-+++.---.++-.|+.+.-+|
T Consensus 400 ~~vG~dpe~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~~i~~~~~~l~~dk~~--~~~~vnn~ki~l~~~ieki~~~l 477 (543)
T COG1315 400 IDVGMDPEIVERLKELTEEISLHEERLKKLTKLLVALVKVKIESKKNILPPDKES--LLTAVNNTKITLRNSIEKIKAEL 477 (543)
T ss_pred eEeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHH--HHHhhhhhhccHHHHHHHHHHHH
Confidence 44579997 4778999999999999887766544 577888899766553 33344444444566778888888
Q ss_pred Hhhhhc
Q psy16169 92 ADLEEK 97 (139)
Q Consensus 92 a~le~e 97 (139)
+.|.++
T Consensus 478 ~~lqe~ 483 (543)
T COG1315 478 EGLQEE 483 (543)
T ss_pred HHHHHH
Confidence 777665
No 47
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=54.48 E-value=30 Score=25.58 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhHhc
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMNYTQ 57 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~yke 57 (139)
.+..+|..++.-+..||.+|...+....+++
T Consensus 85 ~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~ 115 (139)
T PF05615_consen 85 EIEQEIEQAKKEIEELKEELEEAKRVRQNKE 115 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777666665
No 48
>KOG3990|consensus
Probab=54.37 E-value=81 Score=27.95 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcC
Q psy16169 24 DVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLV 61 (139)
Q Consensus 24 DPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~ 61 (139)
||--=-+-|+..+++|.+||.-|.|.-+++.-|.+-+.
T Consensus 219 ~~~dh~V~i~~lkeeia~Lkk~L~qkdq~ileKdkqis 256 (305)
T KOG3990|consen 219 DPGDHMVKIQKLKEEIARLKKLLHQKDQLILEKDKQIS 256 (305)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhh
Confidence 44444566899999999999999999999998888754
No 49
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=52.90 E-value=1.1e+02 Score=24.03 Aligned_cols=70 Identities=23% Similarity=0.410 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHh-HhccC---cCCCCCcHH------------HHHHHHHhHHHHHHHHHHHHHHH
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTEMN-YTQRG---LVPMGTRLA------------EMARMRLEYDETRKRIQIIQTQL 91 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~El~-yke~G---~~~~~~~La------------EkvRl~lqYeEArkrv~~iq~qL 91 (139)
++..++.+.....+|++++.....++. |..+. +-.+...|| ....+.-+|+++...+..+..++
T Consensus 42 a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l 121 (221)
T PF04012_consen 42 ARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQL 121 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666667777776666665 33332 233444443 33455666677777777776666
Q ss_pred Hhhhhc
Q psy16169 92 ADLEEK 97 (139)
Q Consensus 92 a~le~e 97 (139)
..++.+
T Consensus 122 ~~l~~k 127 (221)
T PF04012_consen 122 EELEAK 127 (221)
T ss_pred HHHHHH
Confidence 666653
No 50
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=52.10 E-value=43 Score=31.66 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=8.9
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q psy16169 74 RLEYDETRKRIQIIQTQLAD 93 (139)
Q Consensus 74 ~lqYeEArkrv~~iq~qLa~ 93 (139)
.--|.|-++.-+.++-+|.+
T Consensus 384 e~~lqEer~E~qkL~~ql~k 403 (546)
T PF07888_consen 384 EEHLQEERMERQKLEKQLGK 403 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 51
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=51.78 E-value=88 Score=25.96 Aligned_cols=71 Identities=25% Similarity=0.376 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHh-HhccC---cCCCCCcHHHHH------------HHHHhHHHHHHHHHHHHHH
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMN-YTQRG---LVPMGTRLAEMA------------RMRLEYDETRKRIQIIQTQ 90 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~-yke~G---~~~~~~~LaEkv------------Rl~lqYeEArkrv~~iq~q 90 (139)
.++..++.+..+..+|.+++.++..... |..+. +.-+...||..+ .+.-+|.++...+..++.+
T Consensus 42 ~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~ 121 (225)
T COG1842 42 KARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQ 121 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888776 44443 344455555433 2334455555555555555
Q ss_pred HHhhhhc
Q psy16169 91 LADLEEK 97 (139)
Q Consensus 91 La~le~e 97 (139)
+..|+.+
T Consensus 122 ~~~Le~K 128 (225)
T COG1842 122 LAALEQK 128 (225)
T ss_pred HHHHHHH
Confidence 5555543
No 52
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=51.60 E-value=25 Score=27.75 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=25.9
Q ss_pred cccCCC-CCCCccChHHHH------HHHHHHHHhHHHHHHHH
Q psy16169 12 LCSSSS-SASTKYDVDLLK------SDVALARDRVSRLKREL 46 (139)
Q Consensus 12 l~S~sS-s~stKyDPd~lk------aeia~ar~Rv~rLKrEl 46 (139)
+|||.+ +..+-|-|++|- ..|..+|+|+..||.=.
T Consensus 18 sc~~p~~~~p~tysp~~l~~i~~~~~~i~~~~~r~~eLk~lI 59 (142)
T TIGR03042 18 SCSGPAAAVPPTYSPAQLAQIQRQAEGIEAAKDRLPELASLV 59 (142)
T ss_pred HcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 466665 235589999874 46899999999887643
No 53
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=50.69 E-value=27 Score=22.59 Aligned_cols=25 Identities=24% Similarity=0.662 Sum_probs=17.6
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 24 DVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 24 DPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
|-|-+|.|| +...++||..||+|+-
T Consensus 4 dle~~KqEI------L~EvrkEl~K~K~EII 28 (40)
T PF08776_consen 4 DLERLKQEI------LEEVRKELQKVKEEII 28 (40)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 556677777 4567778888877763
No 54
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.63 E-value=1.3e+02 Score=24.05 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=33.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhccCCCCccCCcchhhhhHHHHHHHh
Q psy16169 68 AEMARMRLEYDETRKRIQIIQTQLADLEEKVTPGQAESDKDRLILFQEKEQLLR 121 (139)
Q Consensus 68 aEkvRl~lqYeEArkrv~~iq~qLa~le~e~wPG~~e~drDrL~Li~EKE~LL~ 121 (139)
.++..+--++++.+++++.++.+|+.+.. .|.+++.-+++--..++
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~--------~Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSE--------NDPEKIEKLKEEIKIAK 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHHH
Confidence 78888999999999999999999996654 35555544444333333
No 55
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=48.23 E-value=1e+02 Score=22.36 Aligned_cols=57 Identities=21% Similarity=0.428 Sum_probs=32.8
Q ss_pred CccChHHHHHHHHHHHHhHHHHHHHHHHH--HHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy16169 21 TKYDVDLLKSDVALARDRVSRLKRELEQI--RTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADL 94 (139)
Q Consensus 21 tKyDPd~lkaeia~ar~Rv~rLKrEl~q~--~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~l 94 (139)
++.|-+.|...+.....||..+..++.++ ++++ .+|.+.-.|-+-+++.+..++..+
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv-----------------~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDV-----------------HDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-----------------HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35566666666666666666666666665 4443 345555555555555555555444
No 56
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=48.09 E-value=1.6e+02 Score=25.48 Aligned_cols=34 Identities=9% Similarity=0.121 Sum_probs=25.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhccCCC
Q psy16169 68 AEMARMRLEYDETRKRIQIIQTQLADLEEKVTPG 101 (139)
Q Consensus 68 aEkvRl~lqYeEArkrv~~iq~qLa~le~e~wPG 101 (139)
.|.-....+|+.|+..+...+.++.........+
T Consensus 158 ~~ld~a~~~~~~a~a~l~~a~~~l~~~~~~~~~~ 191 (390)
T PRK15136 158 EELQHARDAVASAQAQLDVAIQQYNANQAMILNT 191 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555667788899998888888888777655533
No 57
>PRK11637 AmiB activator; Provisional
Probab=48.00 E-value=1.3e+02 Score=26.26 Aligned_cols=35 Identities=9% Similarity=0.269 Sum_probs=25.5
Q ss_pred CCccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 20 STKYDVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 20 stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
..+=+=+.++.+|......+..++.++..+..++.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~ 78 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLK 78 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888877777777777777765
No 58
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=47.77 E-value=64 Score=24.72 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccC
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMNYTQRG 59 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G 59 (139)
.||+|...|-.|+..+...+.++.++..-+++.
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~E 36 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQE 36 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777666666666665544443
No 59
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=45.38 E-value=57 Score=28.59 Aligned_cols=98 Identities=23% Similarity=0.381 Sum_probs=63.4
Q ss_pred ccChHHHHHHHHHHHHh--HHH---------HHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16169 22 KYDVDLLKSDVALARDR--VSR---------LKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQ 90 (139)
Q Consensus 22 KyDPd~lkaeia~ar~R--v~r---------LKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~q 90 (139)
..|||+++-|+..|=-| +.- ||+.+..++.-++-... -.-.-+-+--++.-.|+|-+.|+.+|.-+
T Consensus 102 hiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~---EkeeL~~eleele~e~ee~~erlk~le~E 178 (290)
T COG4026 102 HIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQK---EKEELLKELEELEAEYEEVQERLKRLEVE 178 (290)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999776544 333 33333333332221110 01111245667888999999999999999
Q ss_pred HHhhhhc--cCCCCccCCcchhhhhHHHHHHHhh
Q psy16169 91 LADLEEK--VTPGQAESDKDRLILFQEKEQLLRS 122 (139)
Q Consensus 91 La~le~e--~wPG~~e~drDrL~Li~EKE~LL~E 122 (139)
++.|+++ -.||-+.-=++|+-=+-++=+|+.+
T Consensus 179 ~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~ 212 (290)
T COG4026 179 NSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEE 212 (290)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhcccccchHH
Confidence 9999986 5788887777777666666555555
No 60
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=45.03 E-value=63 Score=25.07 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=20.2
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 74 RLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 74 ~lqYeEArkrv~~iq~qLa~le~e 97 (139)
+-.|+.||.+.+.|...+..|+..
T Consensus 44 NaeY~aak~~~~~le~rI~~L~~~ 67 (156)
T TIGR01461 44 NADYQYGKKRLREIDRRVRFLTKR 67 (156)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999998888854
No 61
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=44.66 E-value=95 Score=23.61 Aligned_cols=40 Identities=10% Similarity=0.267 Sum_probs=32.1
Q ss_pred CCccChHHHHH-----HHHHHHHhHHHHHHHHHHHHHhHhHhccC
Q psy16169 20 STKYDVDLLKS-----DVALARDRVSRLKRELEQIRTEMNYTQRG 59 (139)
Q Consensus 20 stKyDPd~lka-----eia~ar~Rv~rLKrEl~q~~~El~yke~G 59 (139)
...+.|..+.+ |+.....++.+|..|+.++...+...+..
T Consensus 66 ~~~~~~~~~~~~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~ 110 (191)
T PF04156_consen 66 VQSVRPQQIEEPRLQGELSELQQQLQQLQEELDQLQERIQELESE 110 (191)
T ss_pred cccchHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777666 99999999999999999998887755554
No 62
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=44.22 E-value=78 Score=21.10 Aligned_cols=57 Identities=21% Similarity=0.408 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHHHHHhHhHhccC-----cCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 37 DRVSRLKRELEQIRTEMNYTQRG-----LVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 37 ~Rv~rLKrEl~q~~~El~yke~G-----~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
.|+..|+.+| ..|+.+++.- ....+...-.....-.++.+...+|..|+.+|.++..
T Consensus 9 ~~l~~L~~~l---~~E~~~r~Gaenm~~~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 9 SRLERLEKEL---SIELKVKEGAENLLRLYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666666654 5688888765 2333333234556677888999999999999988754
No 63
>KOG0999|consensus
Probab=44.17 E-value=75 Score=31.09 Aligned_cols=61 Identities=26% Similarity=0.397 Sum_probs=42.3
Q ss_pred HhHHHHHHHHHHHHHhHhHhccC----------cCCCCCcH-HHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 37 DRVSRLKRELEQIRTEMNYTQRG----------LVPMGTRL-AEMARMRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 37 ~Rv~rLKrEl~q~~~El~yke~G----------~~~~~~~L-aEkvRl~lqYeEArkrv~~iq~qLa~le~e 97 (139)
.++..|..||.|.++||.-++.- |-.++..+ +++.||+-...|.|-|-+.+=++-..||++
T Consensus 107 ~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEE 178 (772)
T KOG0999|consen 107 QKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEE 178 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36778888888888888755543 44444444 677888877777777777766666666665
No 64
>PHA02562 46 endonuclease subunit; Provisional
Probab=43.65 E-value=95 Score=27.18 Aligned_cols=70 Identities=14% Similarity=0.325 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCc--CCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhcc
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTEMNYTQRGL--VPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEKV 98 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~--~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e~ 98 (139)
+|..+..++..+..|+.++..+..++.--+..+ ... ..-++...+.-+|++..+....++.++..++++.
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~-~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i 243 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRK-KNGENIARKQNKYDELVEEAKTIKAEIEELTDEL 243 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666554111111 101 1125577888889999988888888888887764
No 65
>PRK04863 mukB cell division protein MukB; Provisional
Probab=43.57 E-value=1.4e+02 Score=31.35 Aligned_cols=76 Identities=25% Similarity=0.325 Sum_probs=55.3
Q ss_pred ccCh---HHHHHHHHHHHHhHHHHHHHHH------HHHHhHhHhcc-CcCCCCCcHHHHHHHH-----HhHHHHHHHHHH
Q psy16169 22 KYDV---DLLKSDVALARDRVSRLKRELE------QIRTEMNYTQR-GLVPMGTRLAEMARMR-----LEYDETRKRIQI 86 (139)
Q Consensus 22 KyDP---d~lkaeia~ar~Rv~rLKrEl~------q~~~El~yke~-G~~~~~~~LaEkvRl~-----lqYeEArkrv~~ 86 (139)
.||| ++++.++..|+.+...+++-+. +.+.-+.|.+- |+...++.|.++++-+ -+|+.|++....
T Consensus 931 ~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~q 1010 (1486)
T PRK04863 931 QSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQ 1010 (1486)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788 6789999999999999887544 44444446543 5677888887776654 467788888888
Q ss_pred HHHHHHhhhhc
Q psy16169 87 IQTQLADLEEK 97 (139)
Q Consensus 87 iq~qLa~le~e 97 (139)
++.++.+.+..
T Consensus 1011 aq~q~~q~~q~ 1021 (1486)
T PRK04863 1011 AQAQLAQYNQV 1021 (1486)
T ss_pred HHHHHHHHHHH
Confidence 88887777664
No 66
>PRK15396 murein lipoprotein; Provisional
Probab=42.84 E-value=46 Score=23.83 Aligned_cols=42 Identities=24% Similarity=0.448 Sum_probs=34.3
Q ss_pred ccccCCCCCCCccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhH
Q psy16169 11 RLCSSSSSASTKYDVDLLKSDVALARDRVSRLKRELEQIRTEMNY 55 (139)
Q Consensus 11 Sl~S~sSs~stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~y 55 (139)
.+.+|++ ++. +-|+|.++|......|..|+.+...++.+.+.
T Consensus 16 ~LLaGCA-s~~--kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~ 57 (78)
T PRK15396 16 TLLAGCS-SNA--KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA 57 (78)
T ss_pred HHHHHcC-Cch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777 333 66799999999999999999999999988875
No 67
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=41.67 E-value=78 Score=20.55 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTE 52 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~E 52 (139)
|..+...-+..+..|+.++..++.+
T Consensus 38 L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 38 LESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444433
No 68
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=40.69 E-value=79 Score=24.54 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=33.9
Q ss_pred HHHhHHHHHHHHHHHHH-h-------Hh-HhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 35 ARDRVSRLKRELEQIRT-E-------MN-YTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 35 ar~Rv~rLKrEl~q~~~-E-------l~-yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e 97 (139)
+++=..+|+.||.+.+. + +. -..+| +| +=+-.|+.||.+.+.++..++.|+..
T Consensus 8 T~~g~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~G------Dl----~ENaeY~aAk~~~~~~e~rI~~L~~~ 69 (157)
T PRK01885 8 TREGYARLKQELDYLWREERPEVTQKVSWAASLG------DR----SENADYIYGKKRLREIDRRVRFLTKR 69 (157)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcC------Cc----chhhcHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677777777654 2 22 12334 11 22457999999999999888888876
No 69
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=40.51 E-value=1.8e+02 Score=27.09 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy16169 76 EYDETRKRIQIIQTQLADL 94 (139)
Q Consensus 76 qYeEArkrv~~iq~qLa~l 94 (139)
++++..+++..++.+++.+
T Consensus 832 ~~~~l~~~~~~~~~~l~~~ 850 (1179)
T TIGR02168 832 RIAATERRLEDLEEQIEEL 850 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443333
No 70
>smart00338 BRLZ basic region leucin zipper.
Probab=40.31 E-value=73 Score=20.70 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTE 52 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~E 52 (139)
|.++...-+..|..|+.|+..++++
T Consensus 38 L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 38 LEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 71
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.28 E-value=74 Score=20.54 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=23.6
Q ss_pred CccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhH
Q psy16169 21 TKYDVDLLKSDVALARDRVSRLKRELEQIRTEMNY 55 (139)
Q Consensus 21 tKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~y 55 (139)
+..+-..++.+|+..+..+..|+.|-..++.|+..
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444567777777777777777777777776653
No 72
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=40.28 E-value=3.3e+02 Score=25.99 Aligned_cols=87 Identities=26% Similarity=0.373 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccCCCCccC
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEKVTPGQAES 105 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e~wPG~~e~ 105 (139)
..|+.|....-.||..|.+.|..++..+.+...=-.+.+.--.| ..|.-.-+.-++++.++..++.....
T Consensus 39 ~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E-~~Lq~E~~~L~kElE~L~~qlqaqv~--------- 108 (617)
T PF15070_consen 39 RTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVE-QQLQAEAEHLRKELESLEEQLQAQVE--------- 108 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 45777777788888888888888888777655222333333322 22322222234444444444332211
Q ss_pred Ccchh-hhhHHHHHHHhh
Q psy16169 106 DKDRL-ILFQEKEQLLRS 122 (139)
Q Consensus 106 drDrL-~Li~EKE~LL~E 122 (139)
|...| .|++|+|+-|.|
T Consensus 109 ~ne~Ls~L~~EqEerL~E 126 (617)
T PF15070_consen 109 NNEQLSRLNQEQEERLAE 126 (617)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 11222 245677777776
No 73
>PF13514 AAA_27: AAA domain
Probab=39.93 E-value=1.5e+02 Score=29.31 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=41.2
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCc--CCCCCcHHHHHHHHHhHHHHHHHHHH
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGL--VPMGTRLAEMARMRLEYDETRKRIQI 86 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~--~~~~~~LaEkvRl~lqYeEArkrv~~ 86 (139)
..||+.+.+++.....++..|..++..+..++.-.+..+ +.++..++ .+.-++++++.++..
T Consensus 888 ~~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a---~l~~e~e~~~a~l~~ 951 (1111)
T PF13514_consen 888 ELDPDELEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAA---ELEQEREEAEAELEE 951 (1111)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHH---HHHHHHHHHHHHHHH
Confidence 369999999999999999999998888888776555543 33333332 334444444444443
No 74
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=39.37 E-value=1.6e+02 Score=25.82 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=31.7
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhc
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQ 57 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke 57 (139)
..||..+.+++..++.++..|+.+++.+..|+...+
T Consensus 89 ~ld~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~~ 124 (457)
T TIGR01000 89 VYDNGNEENQKQLLEQQLDNLKDQKKSLDTLKQSIE 124 (457)
T ss_pred EECchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999988887643
No 75
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=38.90 E-value=42 Score=19.38 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=14.5
Q ss_pred HHHHHHHhHHHHHHHHHH
Q psy16169 31 DVALARDRVSRLKRELEQ 48 (139)
Q Consensus 31 eia~ar~Rv~rLKrEl~q 48 (139)
||..-|.|+.-|+++|+.
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 677778888888888875
No 76
>PRK09039 hypothetical protein; Validated
Probab=38.71 E-value=1.1e+02 Score=26.45 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=11.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 71 ARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 71 vRl~lqYeEArkrv~~iq~qLa~le 95 (139)
..++-.|.|+...|..|++|++.|.
T Consensus 126 ~~~k~~~se~~~~V~~L~~qI~aLr 150 (343)
T PRK09039 126 DSEKQVSARALAQVELLNQQIAALR 150 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344445555554444444444433
No 77
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=38.39 E-value=56 Score=24.31 Aligned_cols=27 Identities=37% Similarity=0.733 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhH
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEM 53 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El 53 (139)
+|..++...+.|++.+|+|+.-++.+-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (204)
T cd01878 3 QLETDRRLIRERIAKLRRELEKVKKQR 29 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 677889999999999999999887763
No 78
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=38.11 E-value=2.2e+02 Score=23.11 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=17.2
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHH
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKREL 46 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl 46 (139)
+.|+..+.++++.++..+..++.++
T Consensus 72 ~ld~~~~~~~l~~a~a~l~~~~~~~ 96 (334)
T TIGR00998 72 RLDPTNAELALAKAEANLAALVRQT 96 (334)
T ss_pred EECchHHHHHHHHHHHHHHHHHHHH
Confidence 6788888777777777665554443
No 79
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=37.85 E-value=95 Score=21.21 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHh
Q psy16169 25 VDLLKSDVALARDRVSRLKRELEQIRTEMNYT 56 (139)
Q Consensus 25 Pd~lkaeia~ar~Rv~rLKrEl~q~~~El~yk 56 (139)
-|+|-++|.+-..+|.+|..++..++.+++.-
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~a 36 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAA 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999998743
No 80
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=37.41 E-value=78 Score=22.79 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhHhcc
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMNYTQR 58 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~ 58 (139)
-|.-|-+..+.|+.+|+-||.+++.+.+-++.
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~d 35 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKREFQIKED 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 46678888899999999999999999886654
No 81
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=37.31 E-value=1.4e+02 Score=22.17 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=33.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHhHhccCc-CCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16169 32 VALARDRVSRLKRELEQIRTEMNYTQRGL-VPMGTRLAEMARMRLEYDETRKRIQIIQTQLA 92 (139)
Q Consensus 32 ia~ar~Rv~rLKrEl~q~~~El~yke~G~-~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa 92 (139)
|...|..+..++.++.+++.+..--..++ ....+--.++..|.-+-+++++|+..|..|=.
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~ 122 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNK 122 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333333 12222334577777888888888888887743
No 82
>KOG0018|consensus
Probab=36.41 E-value=1e+02 Score=31.86 Aligned_cols=69 Identities=19% Similarity=0.399 Sum_probs=46.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccCCCCc
Q psy16169 32 VALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEKVTPGQA 103 (139)
Q Consensus 32 ia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e~wPG~~ 103 (139)
|+..+.-+..+|+.|.+-.+|+++.+-++--.+.++-+-.| ..+.-..++.+|+.+..++++++.-|-.
T Consensus 692 ~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r---~l~~~e~~~~~L~~~~n~ved~if~~f~ 760 (1141)
T KOG0018|consen 692 LKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKR---KLQNREGEMKELEERMNKVEDRIFKGFC 760 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445566777778888888888775444455544444 3445566788899999999888776654
No 83
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=36.05 E-value=1.5e+02 Score=20.77 Aligned_cols=58 Identities=21% Similarity=0.313 Sum_probs=42.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHH----HHhHHHHHHHHHHH
Q psy16169 30 SDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARM----RLEYDETRKRIQII 87 (139)
Q Consensus 30 aeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl----~lqYeEArkrv~~i 87 (139)
.||..-+.+|.+|++--.|++-+||-=-.|++.+=..+.+-++- --.+++||++++..
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~~ 63 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKAA 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777788899999999999999997777787777777666543 23456666665543
No 84
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=36.03 E-value=2.6e+02 Score=23.78 Aligned_cols=57 Identities=19% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 29 KSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 29 kaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le 95 (139)
+.++..+|.++..++-++..++.++.=.+. +...+.-.-++...+++.++.+++.++
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~----------el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQE----------ELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 85
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=36.00 E-value=1.9e+02 Score=23.23 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 63 MGTRLAEMARMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 63 ~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
+.+.+-|-.+ .++|.+..+++.++.++..|.+
T Consensus 175 s~~~rq~L~~--~qrdl~~~~~~~l~~~l~~Lq~ 206 (240)
T PF12795_consen 175 SNNNRQELLQ--LQRDLLKARIQRLQQQLQALQN 206 (240)
T ss_pred CcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445544 4556688888888888888876
No 86
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=35.88 E-value=45 Score=25.56 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=20.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 29 KSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 29 kaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
++|...-+.||.+|++.+.+++.+++
T Consensus 82 ~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 82 QSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667778888888888888887764
No 87
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=35.81 E-value=85 Score=22.96 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=24.0
Q ss_pred cChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHh
Q psy16169 23 YDVDLLKSDVALARDRVSRLKRELEQIRTEMNYT 56 (139)
Q Consensus 23 yDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yk 56 (139)
..=..++++++..+..+.+|+.+-.+++.|+..=
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677777777777777777777777777643
No 88
>COG4679 Phage-related protein [Function unknown]
Probab=35.30 E-value=36 Score=26.32 Aligned_cols=19 Identities=47% Similarity=0.705 Sum_probs=16.8
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q psy16169 29 KSDVALARDRVSRLKRELE 47 (139)
Q Consensus 29 kaeia~ar~Rv~rLKrEl~ 47 (139)
|+||+.|+.|++.|++++.
T Consensus 96 k~d~~la~rRykdl~~rl~ 114 (116)
T COG4679 96 KRDIDLAKRRYKDLKRRLK 114 (116)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999864
No 89
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=35.14 E-value=57 Score=28.85 Aligned_cols=26 Identities=23% Similarity=0.604 Sum_probs=18.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 29 KSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 29 kaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
++||..+-.||..||||+..++.+|.
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~ 313 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLG 313 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777776665
No 90
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=35.13 E-value=90 Score=22.14 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=26.5
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
-|||+.+-.=|...-.-+..|.+|....+.++.
T Consensus 17 GYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~ 49 (131)
T PF05103_consen 17 GYDPDEVDDFLDELAEELERLQRENAELKEEIE 49 (131)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999888877777777888877777777776
No 91
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=35.02 E-value=1.9e+02 Score=21.46 Aligned_cols=69 Identities=17% Similarity=0.388 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHh------------HhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMN------------YTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADL 94 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~------------yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~l 94 (139)
.+.+|+..++.++......+..++.++. |.. -++--.........++-+|.+.+..+..++.+....
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~-El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a 85 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYER-ELVKHAEDIKELQQLREELQELQQEINELKAEAESA 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666665 221 133334445566778888888888888877775544
Q ss_pred hh
Q psy16169 95 EE 96 (139)
Q Consensus 95 e~ 96 (139)
..
T Consensus 86 ~~ 87 (132)
T PF07926_consen 86 KA 87 (132)
T ss_pred HH
Confidence 33
No 92
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=34.51 E-value=2.1e+02 Score=21.85 Aligned_cols=74 Identities=18% Similarity=0.386 Sum_probs=51.5
Q ss_pred CCCccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccC---cCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 19 ASTKYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRG---LVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 19 ~stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G---~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le 95 (139)
+++.-|-+.|+.|| +..+.++++.+.....++.---.+ +++.. ....-.+.-.|++|++.+...-..|...|
T Consensus 91 ~~a~i~e~~L~~el---~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~--~~~~~~~~~~~~~~~~~l~~~lekL~~fd 165 (204)
T PF04740_consen 91 SNAIIDEDFLESEL---KKKLNQLKEQIEDLQDEINSILSSVSDIVSLP--KPSSSSFIDSLEKAKKKLQETLEKLRAFD 165 (204)
T ss_pred ccccccHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhccchHHHHhhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999888 677888888888887777422222 11111 12345667778999999998888888888
Q ss_pred hc
Q psy16169 96 EK 97 (139)
Q Consensus 96 ~e 97 (139)
..
T Consensus 166 ~~ 167 (204)
T PF04740_consen 166 QQ 167 (204)
T ss_pred HH
Confidence 63
No 93
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=34.45 E-value=1e+02 Score=25.46 Aligned_cols=82 Identities=23% Similarity=0.348 Sum_probs=40.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHH-HHhHhHhccCcCCCCCcHHHH--HHHHHhHHHHHHHHHHHHHHHHhhhhccCCCCccC
Q psy16169 29 KSDVALARDRVSRLKRELEQI-RTEMNYTQRGLVPMGTRLAEM--ARMRLEYDETRKRIQIIQTQLADLEEKVTPGQAES 105 (139)
Q Consensus 29 kaeia~ar~Rv~rLKrEl~q~-~~El~yke~G~~~~~~~LaEk--vRl~lqYeEArkrv~~iq~qLa~le~e~wPG~~e~ 105 (139)
..-++.|..|..+.=.||..- +.--.|..+| ++-|.+.|+ -||..+-|.=+...+.+..+..++.. .++.
T Consensus 101 ~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqg--DD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~-----~l~e 173 (192)
T PF09727_consen 101 LEQLAAAEKRHRRTIQELEEEKRKHAEDMAQG--DDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVS-----QLEE 173 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 344555666666666666553 2334466666 222444444 44555555555555555555444333 2233
Q ss_pred Ccch-----hhhhHHHH
Q psy16169 106 DKDR-----LILFQEKE 117 (139)
Q Consensus 106 drDr-----L~Li~EKE 117 (139)
++.+ |+|+.|..
T Consensus 174 E~~k~K~~~l~Lv~E~k 190 (192)
T PF09727_consen 174 ERTKLKSFVLMLVKERK 190 (192)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 3333 67777654
No 94
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=34.42 E-value=41 Score=25.80 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccC
Q psy16169 78 DETRKRIQIIQTQLADLEEKVT 99 (139)
Q Consensus 78 eEArkrv~~iq~qLa~le~e~w 99 (139)
++-+-+|..|..|+++|+++.|
T Consensus 86 ~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 86 DELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5677889999999999999988
No 95
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=33.87 E-value=1.5e+02 Score=23.10 Aligned_cols=24 Identities=8% Similarity=0.281 Sum_probs=16.8
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 74 RLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 74 ~lqYeEArkrv~~iq~qLa~le~e 97 (139)
|-.|.+||++.+.|...+..|+..
T Consensus 46 Naey~aak~~q~~~e~RI~~L~~~ 69 (158)
T PRK05892 46 QAEAIQRADELARLDDRINELDRR 69 (158)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 346888888777777776666654
No 96
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=33.43 E-value=1.8e+02 Score=24.12 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=18.1
Q ss_pred hHhccC--cCCCCCcHHHHHHHHHhHHHHHHHHHHHHH
Q psy16169 54 NYTQRG--LVPMGTRLAEMARMRLEYDETRKRIQIIQT 89 (139)
Q Consensus 54 ~yke~G--~~~~~~~LaEkvRl~lqYeEArkrv~~iq~ 89 (139)
.|+..| |......--|.|||+-+..+--.++..++.
T Consensus 80 s~~~~gTdfS~~~~~dwEevrLkrELa~Le~~l~~~~~ 117 (195)
T PF12761_consen 80 SYKEKGTDFSATEGTDWEEVRLKRELAELEEKLSKVEQ 117 (195)
T ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 466666 433444445777775444444333333333
No 97
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=33.10 E-value=2.8e+02 Score=24.01 Aligned_cols=24 Identities=13% Similarity=0.329 Sum_probs=10.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 73 MRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 73 l~lqYeEArkrv~~iq~qLa~le~ 96 (139)
+.-.-++...+++.++.+++.++.
T Consensus 237 l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 237 LESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444
No 98
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=33.05 E-value=2.2e+02 Score=24.86 Aligned_cols=60 Identities=17% Similarity=0.331 Sum_probs=37.3
Q ss_pred HhHHHHHHHHHHHHHhHh-Hhcc-Cc-CCCCCc--HHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 37 DRVSRLKRELEQIRTEMN-YTQR-GL-VPMGTR--LAEMARMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 37 ~Rv~rLKrEl~q~~~El~-yke~-G~-~~~~~~--LaEkvRl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
.++.+++.+|.+...++. |+.+ |. .+.+.. ......++-+|..++-+++.++.+++.+..
T Consensus 168 ~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 168 EQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKR 232 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777776 7644 43 222222 244555666777777777777777666665
No 99
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein
Probab=32.63 E-value=47 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.549 Sum_probs=21.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 73 MRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 73 l~lqYeEArkrv~~iq~qLa~le~e 97 (139)
|.-+|+++++.+..|+.+++.++..
T Consensus 1 ~~~~~~~~e~~~~~l~~~i~~~~~~ 25 (154)
T PF13015_consen 1 LEKEIDEAERKLSDLESKIRELEDD 25 (154)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999998875
No 100
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=32.37 E-value=2.1e+02 Score=22.59 Aligned_cols=75 Identities=17% Similarity=0.390 Sum_probs=44.5
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHH----h-------HhHh--ccCcCCCCCcHHHHHHHHHhHHHHHHHH--HH
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRT----E-------MNYT--QRGLVPMGTRLAEMARMRLEYDETRKRI--QI 86 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~----E-------l~yk--e~G~~~~~~~LaEkvRl~lqYeEArkrv--~~ 86 (139)
.+|+..+...+..++..+.+...++..++. + +.+. +.-+.....--.+...+..+|+.++..+ +.
T Consensus 50 ~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (328)
T PF12700_consen 50 ELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAISKEELDQAKANYEQAQAQLNKAQ 129 (328)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTSSTCCHHHHHCHHHHHHHHHC-HH
T ss_pred EEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHhhhcccc
Confidence 678888888888888888777777766661 1 1111 1112222222344566778888888887 77
Q ss_pred HHHHHHhhhh
Q psy16169 87 IQTQLADLEE 96 (139)
Q Consensus 87 iq~qLa~le~ 96 (139)
++.+++.+-.
T Consensus 130 ~~~~~~~i~A 139 (328)
T PF12700_consen 130 LQSQLAQIKA 139 (328)
T ss_dssp HHHHHHHEE-
T ss_pred cccccccccc
Confidence 7776655433
No 101
>PRK03918 chromosome segregation protein; Provisional
Probab=32.22 E-value=3.7e+02 Score=25.09 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=12.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 29 KSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 29 kaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
++++...+..+..|+.++..++.++.
T Consensus 625 ~~~l~~~~~~i~~l~~~i~~l~~~~~ 650 (880)
T PRK03918 625 EEELDKAFEELAETEKRLEELRKELE 650 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555544443
No 102
>KOG0995|consensus
Probab=32.03 E-value=3.3e+02 Score=26.30 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=32.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccCCCCc
Q psy16169 67 LAEMARMRLEYDETRKRIQIIQTQLADLEEKVTPGQA 103 (139)
Q Consensus 67 LaEkvRl~lqYeEArkrv~~iq~qLa~le~e~wPG~~ 103 (139)
-+|--||+..-++-.+.|..|+.++..|..++|---+
T Consensus 331 ~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 331 GEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4788899999999999999999999999999995433
No 103
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=31.81 E-value=89 Score=22.27 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=30.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHh---HhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHH
Q psy16169 30 SDVALARDRVSRLKRELEQIRTEMN---YTQRGLVPMGTRLAEMARMRLEYDETRKRIQII 87 (139)
Q Consensus 30 aeia~ar~Rv~rLKrEl~q~~~El~---yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~i 87 (139)
.|-...--=...||+.|.+.++||. |..-.-+ | =.+|+.-.=++||..++++
T Consensus 15 nEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~----R--ViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 15 NEWDALMLENFTLRKQLDQTRQELSHALYQHDAAC----R--VIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----H--HHHHHHHhHHHHHHHHHhc
Confidence 3444444456788888888888887 5432210 0 0345555666666666554
No 104
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.73 E-value=1.3e+02 Score=19.32 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=22.2
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 24 DVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 24 DPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
|=+.||+.-..-+....+|++|....+.|+.
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777665
No 105
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=31.47 E-value=74 Score=22.34 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIR 50 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~ 50 (139)
.+=..||+.+|.-|..+++++.+|+
T Consensus 73 ~l~~~Ei~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 73 NLSEEEISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 3457899999999999999999986
No 106
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=31.31 E-value=1.1e+02 Score=26.90 Aligned_cols=82 Identities=22% Similarity=0.327 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccCCCCccCC
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEKVTPGQAESD 106 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e~wPG~~e~d 106 (139)
++..++.+.+.-|.||.-|++.|+.=..+--.+ .+. ..-+..=-+|-+|......+||.+||+.+-==...-.
T Consensus 254 I~~~DldTIsrLV~RL~deIE~~~~~v~fave~---~~d----~~~vk~vv~el~k~~~~f~~qleELeehv~lC~~tIn 326 (336)
T PF05055_consen 254 ILIKDLDTISRLVDRLEDEIEHMKALVDFAVER---GED----EEAVKEVVKELKKNVESFTEQLEELEEHVYLCFKTIN 326 (336)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc---Ccc----chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888999999999988776643221 111 1224444578899999999999999997655555555
Q ss_pred cchhhhhHH
Q psy16169 107 KDRLILFQE 115 (139)
Q Consensus 107 rDrL~Li~E 115 (139)
|-|.++++|
T Consensus 327 rAR~lVlq~ 335 (336)
T PF05055_consen 327 RARTLVLQE 335 (336)
T ss_pred HHHHHHHhh
Confidence 666555553
No 107
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=31.20 E-value=16 Score=34.06 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 29 KSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 29 kaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
++|+...|.+|..|+.|+.+++.+..
T Consensus 60 ~~e~~~~k~~l~~Le~e~~~~~~e~~ 85 (722)
T PF05557_consen 60 RAELIELKAQLNQLEYELEQLKQEHE 85 (722)
T ss_dssp --------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999998888764
No 108
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=31.05 E-value=1.5e+02 Score=24.75 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
++...|+....|..+|..+|..+++..+
T Consensus 116 ~~eR~ia~~~~ra~~LqaDl~~~~~Q~~ 143 (192)
T PF11180_consen 116 QLERLIAESEARANRLQADLQIARQQQQ 143 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788899999999999988876544
No 109
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=30.12 E-value=92 Score=22.79 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHhH
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIRTEMNY 55 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~~El~y 55 (139)
+.++++++..+.+-.+|++|+..++....|
T Consensus 37 ~~~~~e~~~l~~~n~~L~~eI~~L~~~~dy 66 (105)
T PRK00888 37 AAQQQTNAKLKARNDQLFAEIDDLKGGQEA 66 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcHHH
Confidence 567788888888888888888877774444
No 110
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=29.54 E-value=1.9e+02 Score=21.97 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=15.3
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 75 LEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 75 lqYeEArkrv~~iq~qLa~le~e 97 (139)
-.|.+||.+.+.+...+..|+.+
T Consensus 42 a~y~aak~~~~~~e~ri~~L~~~ 64 (151)
T TIGR01462 42 AEYHAAKEEQGFNEGRIAELEDL 64 (151)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777666666666554
No 111
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=29.32 E-value=1.2e+02 Score=23.02 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCccCCcchhhhhHHHHHHHhh
Q psy16169 80 TRKRIQIIQTQLADLEEKVTPGQAESDKDRLILFQEKEQLLRS 122 (139)
Q Consensus 80 Arkrv~~iq~qLa~le~e~wPG~~e~drDrL~Li~EKE~LL~E 122 (139)
-.++|+.|+.++...+. .+-..|+|||+||..
T Consensus 102 Q~~~i~~L~~E~~~~~~-----------el~~~v~e~e~ll~~ 133 (144)
T PF11221_consen 102 QLKRIKELEEENEEAEE-----------ELQEAVKEAEELLKQ 133 (144)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 34677788887776665 567889999999987
No 112
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=29.31 E-value=1.6e+02 Score=20.62 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=26.5
Q ss_pred cChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHh
Q psy16169 23 YDVDLLKSDVALARDRVSRLKRELEQIRTEMNYT 56 (139)
Q Consensus 23 yDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yk 56 (139)
-|.+.|++++..-+..+..|..++..+..+++..
T Consensus 67 ~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 67 EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888777654
No 113
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=29.07 E-value=2.4e+02 Score=26.19 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=21.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhcc
Q psy16169 73 MRLEYDETRKRIQIIQTQLADLEEKV 98 (139)
Q Consensus 73 l~lqYeEArkrv~~iq~qLa~le~e~ 98 (139)
+.-+|+.|+.+...|+.++++++.+.
T Consensus 343 ~~~~~~~a~~~~~~L~~~l~~~~~~~ 368 (754)
T TIGR01005 343 LLMQADAAQARESQLVSDVNQLKAAS 368 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999999999887653
No 114
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=28.94 E-value=2.6e+02 Score=22.23 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=17.1
Q ss_pred HHHHHhHHHHHHHHHHHHHhHh
Q psy16169 33 ALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 33 a~ar~Rv~rLKrEl~q~~~El~ 54 (139)
..+|.-+.+|++||.+++.++.
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~ 44 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVS 44 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888888888888776
No 115
>KOG4302|consensus
Probab=28.90 E-value=4.9e+02 Score=25.42 Aligned_cols=69 Identities=26% Similarity=0.361 Sum_probs=49.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHh--HhccCc-----C---CCCCcHHH--------HHHHHHhHHHHHHHHHHHHHHH
Q psy16169 30 SDVALARDRVSRLKRELEQIRTEMN--YTQRGL-----V---PMGTRLAE--------MARMRLEYDETRKRIQIIQTQL 91 (139)
Q Consensus 30 aeia~ar~Rv~rLKrEl~q~~~El~--yke~G~-----~---~~~~~LaE--------kvRl~lqYeEArkrv~~iq~qL 91 (139)
.=|..|..=-.+|.+++++.+.|+. ..+.|. . .....|-+ ---|+.||+|.++.+..++.|+
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qi 133 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQI 133 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777889999999999998 666662 1 11223321 1247889999999999999999
Q ss_pred Hhhhhcc
Q psy16169 92 ADLEEKV 98 (139)
Q Consensus 92 a~le~e~ 98 (139)
++|=++.
T Consensus 134 e~l~~~l 140 (660)
T KOG4302|consen 134 EKLCEEL 140 (660)
T ss_pred HHHHHHh
Confidence 9987764
No 116
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=28.86 E-value=2.2e+02 Score=28.48 Aligned_cols=65 Identities=15% Similarity=0.275 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCc-CCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTEMNYTQRGL-VPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~-~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
..+|++.-...+.+|..|++.+..+|.-. +| .-......++++-.+ ++.+.+++.|+.+|+.|..
T Consensus 840 ~~~e~~rLekel~kl~Kel~kl~~~L~n~--~f~~kap~~~veka~~kl--~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 840 LAAETARVDKEIGKVDQDLAVLERKLQNP--SFVQNAPPAVVEKDRARA--EELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcCc--hhhhcCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc
Confidence 55777777777788888888888877632 23 234556678888877 7999999999999999986
No 117
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=28.51 E-value=2.3e+02 Score=20.45 Aligned_cols=67 Identities=21% Similarity=0.109 Sum_probs=33.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHH-------HHHHHHHHHHHHHHhhhhc
Q psy16169 31 DVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYD-------ETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 31 eia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYe-------EArkrv~~iq~qLa~le~e 97 (139)
++..-|.++...|.+|..--.+..-.-.+.....++.+|.+--..+.+ ..++.++.|...|+.+++.
T Consensus 5 ~l~~~k~~L~~~~~~L~~~i~~~~~~~~~~~~~~~d~~D~a~~~~~~~~~~~~~~~~~~~l~~i~~AL~ri~~g 78 (110)
T TIGR02420 5 QLEHFRKILLRWKQELLEEADKTLEHLQEESENFPDPADRATQEEERALELRTRDRERKLIKKIDEALKRIEDG 78 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444555555555555433211111111112223456666654433332 3356688888889988763
No 118
>KOG2185|consensus
Probab=28.27 E-value=1.9e+02 Score=27.23 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhcc
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEKV 98 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e~ 98 (139)
|-++.-..-.-+.|||+++..+++=|+- ..-++.--.+|.-+..|+++.+++|+-|.|.|-++.
T Consensus 411 l~~~lv~~edeirrlkrdm~klkq~l~R-------N~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~eq 474 (486)
T KOG2185|consen 411 LGAALVEYEDEIRRLKRDMLKLKQMLNR-------NKGDLVVSEALQERLKEVRKALASLLAQEAALSNEQ 474 (486)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4455555666778888888888776542 233555677888899999999999999999987764
No 119
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=27.96 E-value=3.3e+02 Score=22.08 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=13.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q psy16169 69 EMARMRLEYDETRKRIQIIQT 89 (139)
Q Consensus 69 EkvRl~lqYeEArkrv~~iq~ 89 (139)
+.-....+|+.|+..+...+.
T Consensus 147 ~~~~a~~~~~~a~~~l~~~~~ 167 (334)
T TIGR00998 147 ELDHARKALLSAKAALNAAIQ 167 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777766655
No 120
>KOG4643|consensus
Probab=27.58 E-value=1.7e+02 Score=30.39 Aligned_cols=109 Identities=25% Similarity=0.407 Sum_probs=61.6
Q ss_pred ccCCCCCCCccCh-----HHHHHHHHHHHHhHHHHHHHHH-------HHHHhHhHhccCcCCCCCcHHHHHHHHHhHHH-
Q psy16169 13 CSSSSSASTKYDV-----DLLKSDVALARDRVSRLKRELE-------QIRTEMNYTQRGLVPMGTRLAEMARMRLEYDE- 79 (139)
Q Consensus 13 ~S~sSs~stKyDP-----d~lkaeia~ar~Rv~rLKrEl~-------q~~~El~yke~G~~~~~~~LaEkvRl~lqYeE- 79 (139)
-||.++..++||- --|+.|+|.++..+.+|+.||. ++++||.-.+. |--+|+..-+|
T Consensus 155 ~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddlea----------e~~klrqe~~e~ 224 (1195)
T KOG4643|consen 155 RSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEA----------EISKLRQEIEEF 224 (1195)
T ss_pred ccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3444445556654 3589999999999999988876 45566554432 22233332222
Q ss_pred ---------HHHHHHHHHHHHHhhhhccCCCCccCC--cchh--------hhhHHHHHHHhhhhcccccCCC
Q psy16169 80 ---------TRKRIQIIQTQLADLEEKVTPGQAESD--KDRL--------ILFQEKEQLLRSRSMSLIRWPI 132 (139)
Q Consensus 80 ---------Arkrv~~iq~qLa~le~e~wPG~~e~d--rDrL--------~Li~EKE~LL~E~~i~p~~rs~ 132 (139)
-++.++-|.++--.++..--|..-|+| +||+ .|.-|| ++|+||+=.-+.|+.
T Consensus 225 l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleek-eMLeeQLq~lrarse 295 (1195)
T KOG4643|consen 225 LDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEK-EMLEEQLQKLRARSE 295 (1195)
T ss_pred HHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHhccc
Confidence 134455666665555555555555663 3443 333344 577776555555553
No 121
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=27.40 E-value=3.5e+02 Score=22.24 Aligned_cols=62 Identities=19% Similarity=0.364 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCc----CCCCCcHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTEMNYTQRGL----VPMGTRLAEMARMRLEYDETRKRIQIIQTQL 91 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~----~~~~~~LaEkvRl~lqYeEArkrv~~iq~qL 91 (139)
+..+++..+..+..+..++....+++.....|- .++.-.-+. ..+-+++.+..+++.++.++
T Consensus 140 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~--~~~~~~~~~~~~l~~l~~~~ 205 (301)
T PF14362_consen 140 LDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYK--EKRAQLDAAQAELDTLQAQI 205 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHH--HHHHHHHHHHHHHHHHHHhH
Confidence 344555556666666666666666666666662 222222222 22344455555555555553
No 122
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=27.22 E-value=2.2e+02 Score=25.19 Aligned_cols=10 Identities=30% Similarity=0.641 Sum_probs=7.5
Q ss_pred hccCCCCccC
Q psy16169 96 EKVTPGQAES 105 (139)
Q Consensus 96 ~e~wPG~~e~ 105 (139)
..+|||..++
T Consensus 400 ~diwpg~~d~ 409 (412)
T PF04108_consen 400 EDIWPGMIDP 409 (412)
T ss_pred hhhCCCccCC
Confidence 3389998875
No 123
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=27.17 E-value=82 Score=23.72 Aligned_cols=12 Identities=42% Similarity=0.717 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhH
Q psy16169 42 LKRELEQIRTEM 53 (139)
Q Consensus 42 LKrEl~q~~~El 53 (139)
+++++..+..+|
T Consensus 25 ~~~~~~~~~~~l 36 (120)
T PF09969_consen 25 LKAELEELEERL 36 (120)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 124
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=27.14 E-value=3.1e+02 Score=21.47 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
.+++-+.-+++|--|.|||.-+..+.. .+.++.+.+++.|..++.++..+..
T Consensus 15 ~~~e~dsle~~v~~LEreLe~~q~~~e-----------------~~~~daEn~k~eie~L~~el~~lt~ 66 (140)
T PF10473_consen 15 SESEKDSLEDHVESLERELEMSQENKE-----------------CLILDAENSKAEIETLEEELEELTS 66 (140)
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHhHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888999999999988777643 4556666666666666666655444
No 125
>PHA02562 46 endonuclease subunit; Provisional
Probab=26.57 E-value=2.9e+02 Score=24.20 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=15.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHhH
Q psy16169 30 SDVALARDRVSRLKRELEQIRTEMNY 55 (139)
Q Consensus 30 aeia~ar~Rv~rLKrEl~q~~~El~y 55 (139)
..+..+...+..++.++.....++.|
T Consensus 255 ~~L~~l~~~~~~~~~~l~~~~~~~~~ 280 (562)
T PHA02562 255 AALNKLNTAAAKIKSKIEQFQKVIKM 280 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666666653
No 126
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=26.48 E-value=4.2e+02 Score=26.49 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhHhc
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTEMNYTQ 57 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~El~yke 57 (139)
|..+|+....++..+..++..++.++.+-+
T Consensus 672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1163)
T COG1196 672 LEEELAELEAQLEKLEEELKSLKNELRSLE 701 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777666443
No 127
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=26.27 E-value=3.6e+02 Score=21.95 Aligned_cols=63 Identities=16% Similarity=0.312 Sum_probs=40.2
Q ss_pred cChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 23 YDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 23 yDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le 95 (139)
-+......||..+|.-|..+-.|.+++..++.-- -.+...++-+|++.......++.++..|-
T Consensus 47 ~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l----------~~e~~~~r~k~e~e~~~~~~le~el~~lr 109 (312)
T PF00038_consen 47 RIKEMYEEELRELRRQIDDLSKEKARLELEIDNL----------KEELEDLRRKYEEELAERKDLEEELESLR 109 (312)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3567788888888888888888888888776511 12344555555555555555555544443
No 128
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=26.09 E-value=1.3e+02 Score=25.67 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=31.2
Q ss_pred CCccC---hHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 20 STKYD---VDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 20 stKyD---Pd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
.-||+ |+.+++|+.-+-.....|--++.+++.+.+
T Consensus 173 ~YKy~~~~Pe~i~~el~~~a~~~~~lDe~m~~I~~~i~ 210 (231)
T COG2357 173 RYKYGGEVPEEIKAELKRAAEAAAGLDEEMSEIRKEIQ 210 (231)
T ss_pred hccccccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34787 999999999999999999999999998876
No 129
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=25.88 E-value=2.8e+02 Score=20.59 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=11.1
Q ss_pred cChHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16169 23 YDVDLLKSDVALARDRVSRLKRELEQI 49 (139)
Q Consensus 23 yDPd~lkaeia~ar~Rv~rLKrEl~q~ 49 (139)
+|-+.|...+...+.++..+.||+...
T Consensus 66 ~d~~~l~~~~~rL~~~~~~~ere~~~~ 92 (151)
T PF11559_consen 66 SDIERLQNDVERLKEQLEELERELASA 92 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 130
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.83 E-value=3e+02 Score=20.89 Aligned_cols=66 Identities=18% Similarity=0.351 Sum_probs=40.1
Q ss_pred cChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 23 YDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 23 yDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
=+-..+..+|..-+..+..|+.+...++.||.--.. ..-.. .|.-+-++-+..+..++..|..|.+
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~-----~~t~~---el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSS-----EPTNE---ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556778888888888888888888888763211 11111 2333334445556666666666666
No 131
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=25.60 E-value=5.2e+02 Score=23.90 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=12.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhH
Q psy16169 30 SDVALARDRVSRLKRELEQIRTEM 53 (139)
Q Consensus 30 aeia~ar~Rv~rLKrEl~q~~~El 53 (139)
+++...+.++.++..|+..+...|
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555544
No 132
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=25.35 E-value=40 Score=18.98 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=8.6
Q ss_pred HHHHHhh--hhcccccCC
Q psy16169 116 KEQLLRS--RSMSLIRWP 131 (139)
Q Consensus 116 KE~LL~E--~~i~p~~rs 131 (139)
.|++|+| .++-|++++
T Consensus 2 ~deiL~~CI~sAmPk~~~ 19 (20)
T PF05924_consen 2 EDEILQECIGSAMPKRRR 19 (20)
T ss_dssp -HHHHHHHHHCTS-----
T ss_pred HHHHHHHHHHHhcccccC
Confidence 3589999 888888775
No 133
>KOG0977|consensus
Probab=25.29 E-value=5.6e+02 Score=24.45 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=46.2
Q ss_pred CccChHHHHHHHHHHHHh-------HHHHHHHHHHHHHhHhHhccCcCCCCCcH-----HHHHHHHHhHHHHHHHHHHHH
Q psy16169 21 TKYDVDLLKSDVALARDR-------VSRLKRELEQIRTEMNYTQRGLVPMGTRL-----AEMARMRLEYDETRKRIQIIQ 88 (139)
Q Consensus 21 tKyDPd~lkaeia~ar~R-------v~rLKrEl~q~~~El~yke~G~~~~~~~L-----aEkvRl~lqYeEArkrv~~iq 88 (139)
+.-.-++=|.||+.--+| |--|..|-..+..++.--+.|+-.+.+.+ +|.+.++---+++-+..+.++
T Consensus 33 ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e 112 (546)
T KOG0977|consen 33 IRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLE 112 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 355556667777665554 55688888888888886666653333333 455555555666655555555
Q ss_pred HHHHhhhh
Q psy16169 89 TQLADLEE 96 (139)
Q Consensus 89 ~qLa~le~ 96 (139)
.++.+|.+
T Consensus 113 ~ei~kl~~ 120 (546)
T KOG0977|consen 113 IEITKLRE 120 (546)
T ss_pred HHHHHhHH
Confidence 55554444
No 134
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=25.18 E-value=4.6e+02 Score=26.44 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=25.9
Q ss_pred cChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 23 YDVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 23 yDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
.|++.|+++++.+...+..+..+.++....+.
T Consensus 600 ~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~ 631 (1201)
T PF12128_consen 600 ASEEELRERLEQAEDQLQSAEERQEELEKQLK 631 (1201)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999998888888877777666654
No 135
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=25.15 E-value=1.3e+02 Score=22.12 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=33.1
Q ss_pred ccccCCCCCCCccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhH
Q psy16169 11 RLCSSSSSASTKYDVDLLKSDVALARDRVSRLKRELEQIRTEMNY 55 (139)
Q Consensus 11 Sl~S~sSs~stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~y 55 (139)
.+.+|.+| +. +-++|.++|......+.++-.+...++.....
T Consensus 15 ~LLaGCAs-~~--kvdqLss~V~~L~~kvdql~~dv~~a~aaa~a 56 (85)
T PRK09973 15 CLLSGCVN-EQ--KVNQLASNVQTLNAKIARLEQDMKALRPQIYA 56 (85)
T ss_pred HHHHHcCC-ch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677773 32 77889999999999999999998888887753
No 136
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=25.10 E-value=67 Score=27.81 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=21.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHhHh
Q psy16169 31 DVALARDRVSRLKRELEQIRTEMNYT 56 (139)
Q Consensus 31 eia~ar~Rv~rLKrEl~q~~~El~yk 56 (139)
|-.+--.|+.||++|+..++.||.-.
T Consensus 88 e~Es~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 88 EKESPEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456689999999999999999853
No 137
>PF13239 2TM: 2TM domain
Probab=24.93 E-value=58 Score=22.25 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHH
Q psy16169 76 EYDETRKRIQIIQT 89 (139)
Q Consensus 76 qYeEArkrv~~iq~ 89 (139)
+|+.|+++++.++.
T Consensus 1 ~y~~A~~~v~~~k~ 14 (83)
T PF13239_consen 1 KYERAKKRVKRRKG 14 (83)
T ss_pred ChHHHHHHHHHHHH
Confidence 69999999987764
No 138
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=24.53 E-value=99 Score=25.17 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=22.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHhHhc
Q psy16169 30 SDVALARDRVSRLKRELEQIRTEMNYTQ 57 (139)
Q Consensus 30 aeia~ar~Rv~rLKrEl~q~~~El~yke 57 (139)
.-+..||.||..|.+.|...+.|+.-++
T Consensus 144 qLLeaAk~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 144 QLLEAAKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477899999999999999999887443
No 139
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=24.39 E-value=2.2e+02 Score=18.81 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHh-Hhcc--CcCCCCCcHHHHHHHHHhHHH-HHHHHHHHHHHHHhhhh
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIRTEMN-YTQR--GLVPMGTRLAEMARMRLEYDE-TRKRIQIIQTQLADLEE 96 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~~El~-yke~--G~~~~~~~LaEkvRl~lqYeE-Arkrv~~iq~qLa~le~ 96 (139)
|....+++.+...+......|..+..+.. |... |.. .|...++..- ...|-. ....|...+.++..++.
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~~~s~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~ 73 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-QGVSVAQLRN-YQRYISALEQAIQQQQQELERLEQ 73 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SGGGHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666554 3111 113 2444444332 333332 23335555555555554
No 140
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=24.39 E-value=1.2e+02 Score=25.54 Aligned_cols=16 Identities=6% Similarity=0.009 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHH
Q psy16169 76 EYDETRKRIQIIQTQL 91 (139)
Q Consensus 76 qYeEArkrv~~iq~qL 91 (139)
.|++.+++-++|+.-|
T Consensus 92 ~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 92 LTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444455555555443
No 141
>KOG4196|consensus
Probab=24.14 E-value=1.7e+02 Score=23.28 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=10.4
Q ss_pred HhHHHHHHHHHHHHHhHh
Q psy16169 37 DRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 37 ~Rv~rLKrEl~q~~~El~ 54 (139)
.=|.+|+.|.+.|..|+.
T Consensus 88 qqv~~L~~e~s~~~~E~d 105 (135)
T KOG4196|consen 88 QQVEKLKEENSRLRRELD 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556666666666655
No 142
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=24.10 E-value=4.8e+02 Score=22.72 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=20.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 68 AEMARMRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 68 aEkvRl~lqYeEArkrv~~iq~qLa~le~e 97 (139)
.|.++....+.|++.+|..+...|+.|+.+
T Consensus 214 EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~ 243 (269)
T PF05278_consen 214 EELKQKEKEVKEIKERITEMKGRLGELEME 243 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777777777654
No 143
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=23.66 E-value=4.3e+02 Score=23.06 Aligned_cols=66 Identities=14% Similarity=0.262 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLAD 93 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~ 93 (139)
|...++..+.++.-|+.++...+.++.--+.-+......-++-.+|.-+|+-+++-...+..++..
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333111111223334456677777777777666555555443
No 144
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=23.60 E-value=58 Score=23.89 Aligned_cols=47 Identities=26% Similarity=0.453 Sum_probs=0.0
Q ss_pred CccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh----------HhccCcCCCCCcHHHH
Q psy16169 21 TKYDVDLLKSDVALARDRVSRLKRELEQIRTEMN----------YTQRGLVPMGTRLAEM 70 (139)
Q Consensus 21 tKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~----------yke~G~~~~~~~LaEk 70 (139)
.-||||..-.+ -....=+..|+.+|....+.+. |.+ |++-++.|...
T Consensus 11 ~~Fd~d~Fl~~-~~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~d--Fv~Ls~~L~g~ 67 (133)
T PF06148_consen 11 PDFDVDEFLSS-NRRYVSLEDLRKDLRSYSKELKNELIELINDDYAD--FVSLSTNLVGM 67 (133)
T ss_dssp ------------------------------------------------------------
T ss_pred CCCCHHHHHHH-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHH--HHHHHHHHccH
Confidence 45888877666 4445556677777777766665 554 77777776443
No 145
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.32 E-value=5.7e+02 Score=24.15 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=21.0
Q ss_pred HHHhHHHHHHHHHHHHHhHh-Hhcc-CcCC
Q psy16169 35 ARDRVSRLKRELEQIRTEMN-YTQR-GLVP 62 (139)
Q Consensus 35 ar~Rv~rLKrEl~q~~~El~-yke~-G~~~ 62 (139)
..+|+..|+.+|.+...+++ ||++ |+++
T Consensus 272 L~~qL~~l~~~L~~aE~~l~~fr~~~~~~d 301 (726)
T PRK09841 272 LQRQLPEVRSELDQAEEKLNVYRQQRDSVD 301 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35788889999999888887 6665 5544
No 146
>PRK11519 tyrosine kinase; Provisional
Probab=23.17 E-value=5.3e+02 Score=24.33 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=18.8
Q ss_pred HHHhHHHHHHHHHHHHHhHh-Hhcc-CcC
Q psy16169 35 ARDRVSRLKRELEQIRTEMN-YTQR-GLV 61 (139)
Q Consensus 35 ar~Rv~rLKrEl~q~~~El~-yke~-G~~ 61 (139)
...|+..++.+|......++ |+++ |++
T Consensus 272 L~~ql~~l~~~L~~aE~~l~~fr~~~~~v 300 (719)
T PRK11519 272 LAQQLPEVRSRLDVAENKLNAFRQDKDSV 300 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35677888888888887777 6654 444
No 147
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.87 E-value=1.1e+02 Score=20.43 Aligned_cols=35 Identities=14% Similarity=0.309 Sum_probs=25.7
Q ss_pred CCccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 20 STKYDVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 20 stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
+++|.--.+.++++..+..+..++.|-++.+.|+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 21 SAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567777888888888888888877777766
No 148
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=22.84 E-value=2.9e+02 Score=19.66 Aligned_cols=60 Identities=12% Similarity=0.164 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHH
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQT 89 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~ 89 (139)
....++...-.++.||--|.++..++..--.+ +..+...|+.+|+.++.-...-|..+++
T Consensus 21 ~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr---~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 21 KKVKELTILEQKKLRLEAEKAKADQKYFAAMR---SKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45677888888888888888888777653333 2445567888898888877776666665
No 149
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=22.78 E-value=3e+02 Score=23.34 Aligned_cols=33 Identities=12% Similarity=-0.056 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcC
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLV 61 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~ 61 (139)
+..+++++.|+..+..-++++..++. .|+ .|.+
T Consensus 104 ~~a~a~l~~a~a~l~~a~~~~~R~~~--L~~-~~~i 136 (385)
T PRK09578 104 DAAAGALAKAEAAHLAALDKRRRYDD--LVR-DRAV 136 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-cCCC
Confidence 45678899999888888888887765 354 4543
No 150
>PF12752 SUZ: SUZ domain; InterPro: IPR024771 The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterised in the Caenorhabditis elegans protein SZY-20 where it has been shown to bind RNA and allow their localization to the centrosome [].
Probab=22.62 E-value=55 Score=21.54 Aligned_cols=10 Identities=60% Similarity=0.856 Sum_probs=8.1
Q ss_pred hHHHHHHHHH
Q psy16169 76 EYDETRKRIQ 85 (139)
Q Consensus 76 qYeEArkrv~ 85 (139)
.|++||.||-
T Consensus 46 eY~~AR~RIF 55 (59)
T PF12752_consen 46 EYAEARARIF 55 (59)
T ss_pred HHHHHHHHHh
Confidence 6889988874
No 151
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=22.58 E-value=1.8e+02 Score=19.21 Aligned_cols=56 Identities=16% Similarity=0.436 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHhHhHhccC--c---CCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 38 RVSRLKRELEQIRTEMNYTQRG--L---VPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 38 Rv~rLKrEl~q~~~El~yke~G--~---~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e 97 (139)
|+..|.. ++..|+.+++.. + ++..... -+.....++.++.++|..|+.+|.++...
T Consensus 2 ~i~~L~~---~i~~E~ki~~Gae~m~~~~~t~~~~-~~~~~~~~l~~s~~kI~~L~~~L~~l~~~ 62 (70)
T PF02185_consen 2 RIEELQK---KIDKELKIKEGAENMLQAYSTDKKK-VLSEAESQLRESNQKIELLREQLEKLQQR 62 (70)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHCCHHCH--HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHccCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444 345677777765 1 1222222 25677788999999999999999998764
No 152
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=22.41 E-value=45 Score=26.87 Aligned_cols=32 Identities=34% Similarity=0.581 Sum_probs=6.9
Q ss_pred HHHHHHH---HHHHhHHHHHHHHHHHHHhHhHhcc
Q psy16169 27 LLKSDVA---LARDRVSRLKRELEQIRTEMNYTQR 58 (139)
Q Consensus 27 ~lkaeia---~ar~Rv~rLKrEl~q~~~El~yke~ 58 (139)
+|-.||. .-+.-|-|||-|+..+|+|+.-+++
T Consensus 18 lLE~ELdEKE~L~~~~QRLkDE~RDLKqEl~V~ek 52 (166)
T PF04880_consen 18 LLESELDEKENLREEVQRLKDELRDLKQELIVQEK 52 (166)
T ss_dssp HHHHHHHHHHHHHHCH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445553 4556788999999999999965443
No 153
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=22.24 E-value=1.6e+02 Score=21.32 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=15.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHhH
Q psy16169 32 VALARDRVSRLKRELEQIRTEMNY 55 (139)
Q Consensus 32 ia~ar~Rv~rLKrEl~q~~~El~y 55 (139)
+...+.++.+|++++.+++-|.-|
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~di 96 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENEL 96 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777777777777654
No 154
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=22.15 E-value=1.2e+02 Score=27.11 Aligned_cols=59 Identities=25% Similarity=0.487 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCc----HHHHHHHHHhHHHHHHHHHHHHHH
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTR----LAEMARMRLEYDETRKRIQIIQTQ 90 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~----LaEkvRl~lqYeEArkrv~~iq~q 90 (139)
+|..+|..-+.|+..+..||...+..|.|.+.- +. |-+-+.+--.|=..|+.|.|||..
T Consensus 179 LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqek-----n~LlqslLddaniD~~y~ksRR~i~Nl~~~ 241 (323)
T PF08537_consen 179 LLQKKIDELEERLNDLEKELEITKKDLKFAQEK-----NALLQSLLDDANIDSEYVKSRRDIKNLQKE 241 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhcccHHHHHhhhhccccccc
Confidence 345667777777777777777777777765543 22 234455566899999999999753
No 155
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=22.13 E-value=1.4e+02 Score=21.50 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=16.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 72 RMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 72 Rl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
|+.-.++-++.+|+.+|..|-.|+.
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~ 29 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEA 29 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777766666654
No 156
>PRK10869 recombination and repair protein; Provisional
Probab=22.09 E-value=3e+02 Score=25.36 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=35.6
Q ss_pred CccChHH--HHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhH----HHHHHHHHHHHHHHHhh
Q psy16169 21 TKYDVDL--LKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEY----DETRKRIQIIQTQLADL 94 (139)
Q Consensus 21 tKyDPd~--lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqY----eEArkrv~~iq~qLa~l 94 (139)
+.|||.+ +-..+..+..-+..+-++|......+.|-..-+-....||..--+|.-+| ++.-...+.++.+|..|
T Consensus 257 ~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L 336 (553)
T PRK10869 257 IGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQL 336 (553)
T ss_pred hhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 4778775 33344444444444444443333322221111222334555555555555 34444455666666666
Q ss_pred hh
Q psy16169 95 EE 96 (139)
Q Consensus 95 e~ 96 (139)
++
T Consensus 337 ~~ 338 (553)
T PRK10869 337 DD 338 (553)
T ss_pred hC
Confidence 55
No 157
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=22.07 E-value=2.3e+02 Score=24.98 Aligned_cols=69 Identities=10% Similarity=0.212 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhH-hHhccC--cCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIRTEM-NYTQRG--LVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADL 94 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~~El-~yke~G--~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~l 94 (139)
..|+.++...+.++.+|+..+...+..- .+..-. ......-...+..+.-++.+-+.++..|+.++...
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677788888888888888777766521 111000 00000111335566677777777777777777776
No 158
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=22.03 E-value=5.9e+02 Score=24.11 Aligned_cols=78 Identities=18% Similarity=0.311 Sum_probs=45.5
Q ss_pred CCccChHHHHHHHHHHHHhHHHHHHHHHHHHH-------hHhHhccC-------c----CCCCCcHHHHHHHHHhHHHHH
Q psy16169 20 STKYDVDLLKSDVALARDRVSRLKRELEQIRT-------EMNYTQRG-------L----VPMGTRLAEMARMRLEYDETR 81 (139)
Q Consensus 20 stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~-------El~yke~G-------~----~~~~~~LaEkvRl~lqYeEAr 81 (139)
++-|.-|.|...|-..|.-|.---.++.++.. |++-...- + -..-.-+-|.+|+.-||...+
T Consensus 71 ~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lq 150 (499)
T COG4372 71 SGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQ 150 (499)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777776666655444333333333 44311110 1 000111246788888888888
Q ss_pred HHHHHHHHHHHhhhhc
Q psy16169 82 KRIQIIQTQLADLEEK 97 (139)
Q Consensus 82 krv~~iq~qLa~le~e 97 (139)
-|+.++-.|-++|+.+
T Consensus 151 trl~~l~~qr~ql~aq 166 (499)
T COG4372 151 TRLKTLAEQRRQLEAQ 166 (499)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887777765
No 159
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=21.97 E-value=2.2e+02 Score=23.80 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhHh
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTEMNYT 56 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~El~yk 56 (139)
.+.|+..-|..|..|..|+..++.++..-
T Consensus 78 ~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 78 KKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 45677788889999999999999998874
No 160
>PF13514 AAA_27: AAA domain
Probab=21.84 E-value=5.3e+02 Score=25.57 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=25.4
Q ss_pred CCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16169 61 VPMGTRLAEMARMRLEYDETRKRIQIIQTQLA 92 (139)
Q Consensus 61 ~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa 92 (139)
+.+...|.+.+...-+|.+.+.++..++.+|.
T Consensus 840 ~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~ 871 (1111)
T PF13514_consen 840 VEDEEELREAEERAEERRELREELEDLERQLE 871 (1111)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888889999999999998873
No 161
>KOG4687|consensus
Probab=21.71 E-value=5e+02 Score=23.65 Aligned_cols=44 Identities=23% Similarity=0.267 Sum_probs=30.2
Q ss_pred HHHHHHHhHHHHHHHH--HHHHHHHHhhhhccCCCCccCCcchhhhhHHHHHHHhhh
Q psy16169 69 EMARMRLEYDETRKRI--QIIQTQLADLEEKVTPGQAESDKDRLILFQEKEQLLRSR 123 (139)
Q Consensus 69 EkvRl~lqYeEArkrv--~~iq~qLa~le~e~wPG~~e~drDrL~Li~EKE~LL~E~ 123 (139)
-+-.|.|.-|||..=- .-+|-.-+.|+. |=--.|-|||+|+-||
T Consensus 145 neeelqwrrdeanfic~~EgLkak~a~Laf-----------DLkamideKEELimER 190 (389)
T KOG4687|consen 145 NEEELQWRRDEANFICAHEGLKAKCAGLAF-----------DLKAMIDEKEELIMER 190 (389)
T ss_pred chHHHHhhHHHHHHHHHHHHHHHHhhhhhh-----------HHHHHhchHHHHHHHH
Confidence 4567889989888753 345555555554 3345789999999884
No 162
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.60 E-value=3.2e+02 Score=19.79 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=19.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 29 KSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 29 kaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
+.++.....|+.+..+-++++.+++.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~ 59 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLE 59 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777664
No 163
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=21.45 E-value=2.1e+02 Score=17.78 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16169 25 VDLLKSDVALARDRVSRLKRELEQIRT 51 (139)
Q Consensus 25 Pd~lkaeia~ar~Rv~rLKrEl~q~~~ 51 (139)
-.-|.+|..+-|.|=..||--|+|++.
T Consensus 3 EqkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 3 EQKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345788888888899999999988874
No 164
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=21.36 E-value=2.9e+02 Score=22.30 Aligned_cols=72 Identities=10% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccC-----------------c-CCCCCcHHHHHHHHHhHHHHHHHHHHH
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIRTEMNYTQRG-----------------L-VPMGTRLAEMARMRLEYDETRKRIQII 87 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G-----------------~-~~~~~~LaEkvRl~lqYeEArkrv~~i 87 (139)
..+-.++..+..|+..+-..+..+..+|.--... | -....=-.---..-..++.|.++|..+
T Consensus 123 ~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~L 202 (237)
T PF00261_consen 123 KVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKL 202 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhc
Q psy16169 88 QTQLADLEEK 97 (139)
Q Consensus 88 q~qLa~le~e 97 (139)
+.++..|+.+
T Consensus 203 e~~id~le~e 212 (237)
T PF00261_consen 203 EKEIDRLEDE 212 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 165
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=21.34 E-value=5.5e+02 Score=22.37 Aligned_cols=54 Identities=24% Similarity=0.386 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 40 SRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 40 ~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
.-||..|..+...+...++-+- -+.=|-.|++-.++..+..+..++.+|...|+
T Consensus 115 d~Lkd~lee~eE~~~~~~re~~---eK~~elEr~K~~~d~L~~e~~~Lre~L~~rde 168 (302)
T PF09738_consen 115 DLLKDKLEELEETLAQLQREYR---EKIRELERQKRAHDSLREELDELREQLKQRDE 168 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444331 11224567777788888888888888876643
No 166
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=21.25 E-value=4.8e+02 Score=24.31 Aligned_cols=60 Identities=13% Similarity=0.267 Sum_probs=35.5
Q ss_pred HHhHHHHHHHHHHHHHhHh-Hhcc-CcCC-CCCcH--HHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 36 RDRVSRLKRELEQIRTEMN-YTQR-GLVP-MGTRL--AEMARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 36 r~Rv~rLKrEl~q~~~El~-yke~-G~~~-~~~~L--aEkvRl~lqYeEArkrv~~iq~qLa~le 95 (139)
..|+..|+++|.+...++. ||++ |+++ .+..+ .....++-|+..|+-+....+.++..+.
T Consensus 200 ~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 200 APEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888877 7665 4432 22223 4555666666665555444444444333
No 167
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=21.20 E-value=2.3e+02 Score=17.91 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=6.7
Q ss_pred HHhHHHHHHHHHHHHHh
Q psy16169 36 RDRVSRLKRELEQIRTE 52 (139)
Q Consensus 36 r~Rv~rLKrEl~q~~~E 52 (139)
..+|..|..+..+++++
T Consensus 31 e~~~~~L~~en~~L~~~ 47 (54)
T PF07716_consen 31 EQEVQELEEENEQLRQE 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444443333
No 168
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.12 E-value=5.9e+02 Score=22.59 Aligned_cols=44 Identities=23% Similarity=0.571 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhHhHhccCc-CCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 42 LKRELEQIRTEMNYTQRGL-VPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 42 LKrEl~q~~~El~yke~G~-~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e 97 (139)
+-.||.++|++| .++|- +++++.|+.. |+-|..|+.++..+|=+
T Consensus 306 IseeLe~vK~em--eerg~~mtD~sPlv~I----------KqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 306 ISEELEQVKQEM--EERGSSMTDGSPLVKI----------KQALTKLKQEIKQMDVR 350 (359)
T ss_pred HHHHHHHHHHHH--HHhcCCCCCCCHHHHH----------HHHHHHHHHHHHHhhhh
Confidence 333444444444 45674 7788887542 44466677776666543
No 169
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.71 E-value=1.5e+02 Score=24.57 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q psy16169 28 LKSDVALARDRVSRLKRELEQIR 50 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~ 50 (139)
|+.||+.-|..+.++..+|.||+
T Consensus 66 lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 66 NQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 170
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=20.51 E-value=1.5e+02 Score=25.61 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=27.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 68 AEMARMRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 68 aEkvRl~lqYeEArkrv~~iq~qLa~le~e 97 (139)
+|-+||--|-+++..++.++|.+|.+|-..
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~~r 44 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQSR 44 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999998775
No 171
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.42 E-value=6.8e+02 Score=25.26 Aligned_cols=83 Identities=17% Similarity=0.298 Sum_probs=45.2
Q ss_pred CCccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccC
Q psy16169 20 STKYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEKVT 99 (139)
Q Consensus 20 stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e~w 99 (139)
+..|+|+. ..+++.+..++.....+..+..+.+.=-+... ..--.+.-....++..+++++..++.+++.|+...
T Consensus 460 ~~~~~~e~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L- 534 (1201)
T PF12128_consen 460 NPQYTEEE-KEQLEQADKRLEQAQEQQNQAQQAVEELQAEE---QELRKERDQAEEELRQARRELEELRAQIAELQRQL- 534 (1201)
T ss_pred CcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 45566654 34556666666555555554444433111110 00001223344567788888999999999998854
Q ss_pred CCCccCCcchhh
Q psy16169 100 PGQAESDKDRLI 111 (139)
Q Consensus 100 PG~~e~drDrL~ 111 (139)
++..+.|+
T Consensus 535 ----~p~~gSL~ 542 (1201)
T PF12128_consen 535 ----DPQKGSLL 542 (1201)
T ss_pred ----CCCCCcHH
Confidence 44455554
No 172
>KOG4460|consensus
Probab=20.32 E-value=3.7e+02 Score=26.56 Aligned_cols=82 Identities=22% Similarity=0.369 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHH-HHHHhHHHHHHHHHHHHHHHHhh---hhccCCC
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMA-RMRLEYDETRKRIQIIQTQLADL---EEKVTPG 101 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkv-Rl~lqYeEArkrv~~iq~qLa~l---e~e~wPG 101 (139)
|++++|+... ++.|++-..+--|+|+|-++- ...+-|++ +|--+||||.-+-..+-+.+..| -.-.-|-
T Consensus 580 dlV~~e~qrH---~~~l~~~k~~QlQ~l~~~~ee----r~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~ 652 (741)
T KOG4460|consen 580 DLVKEEIQRH---VKLLCDQKKKQLQDLSYCREE----RKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPV 652 (741)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCc
Confidence 5666666543 567777777888888876653 12222222 55667999998866666655444 3446788
Q ss_pred CccCCcch---hhhhH
Q psy16169 102 QAESDKDR---LILFQ 114 (139)
Q Consensus 102 ~~e~drDr---L~Li~ 114 (139)
..+++||= |++|+
T Consensus 653 l~~AErdFk~Elq~~~ 668 (741)
T KOG4460|consen 653 LSDAERDFKKELQLIP 668 (741)
T ss_pred chhHHHHHHHHHHHhH
Confidence 89999985 44444
No 173
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=20.15 E-value=2.7e+02 Score=18.38 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=26.3
Q ss_pred CCccChHHHHH------HHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 20 STKYDVDLLKS------DVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 20 stKyDPd~lka------eia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
+.-|||+..-. -+...+....+|..+......||+
T Consensus 3 ~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr 43 (87)
T PF08700_consen 3 SENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELR 43 (87)
T ss_pred CCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578877654 456678888888888888888887
No 174
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=20.12 E-value=3.9e+02 Score=20.08 Aligned_cols=55 Identities=20% Similarity=0.367 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHH
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQ 88 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq 88 (139)
.+-.-|..++.||..||..|...+..|.++.. .|.+...-+.+|.+.=+=+..|+
T Consensus 76 ~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~-------eL~~L~~~s~~~~~mi~iL~~Ie 130 (142)
T PF04048_consen 76 QILSSISESQERIRELKESLQEAKSLLGCRRE-------ELKELWQRSQEYKEMIEILDQIE 130 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999976543 44445555555665544444433
Done!