Query psy16169
Match_columns 139
No_of_seqs 42 out of 44
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 22:32:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f1m_A Acriflavine resistance 92.4 1.3 4.6E-05 33.6 9.8 74 22-95 52-125 (277)
2 4dk0_A Putative MACA; alpha-ha 91.4 1.3 4.3E-05 34.9 8.9 73 22-94 62-141 (369)
3 3hnw_A Uncharacterized protein 87.6 3.6 0.00012 30.6 8.4 56 30-96 68-124 (138)
4 3fpp_A Macrolide-specific effl 86.9 2.5 8.5E-05 33.0 7.5 34 22-55 61-94 (341)
5 1use_A VAsp, vasodilator-stimu 84.6 0.88 3E-05 29.2 3.2 30 19-54 3-32 (45)
6 2yy0_A C-MYC-binding protein; 84.3 1.6 5.3E-05 28.1 4.3 36 19-54 15-50 (53)
7 3fav_B ESAT-6, 6 kDa early sec 75.9 13 0.00045 23.9 7.3 70 21-95 3-72 (94)
8 3oja_B Anopheles plasmodium-re 72.3 20 0.00067 30.0 8.6 68 26-96 505-572 (597)
9 2vs0_A Virulence factor ESXA; 71.5 17 0.00057 23.1 8.5 71 20-95 3-73 (97)
10 3hnw_A Uncharacterized protein 71.2 25 0.00085 26.0 8.1 65 23-97 68-132 (138)
11 2eqb_B RAB guanine nucleotide 69.8 9.4 0.00032 27.5 5.3 68 26-95 8-96 (97)
12 1vf7_A Multidrug resistance pr 69.1 34 0.0012 27.3 9.1 65 22-93 73-137 (369)
13 1l8d_A DNA double-strand break 65.8 28 0.00096 23.5 9.6 42 26-67 13-57 (112)
14 3lnn_A Membrane fusion protein 63.5 25 0.00086 27.4 7.1 61 28-95 96-156 (359)
15 2js5_A Uncharacterized protein 61.7 34 0.0011 23.4 6.6 57 31-87 4-64 (71)
16 4dk0_A Putative MACA; alpha-ha 57.7 65 0.0022 25.1 8.6 73 25-97 72-151 (369)
17 3zbh_A ESXA; unknown function, 57.3 34 0.0012 21.7 7.9 72 20-96 6-77 (99)
18 3fav_A ESAT-6-like protein ESX 56.8 38 0.0013 22.1 6.3 72 20-96 4-75 (101)
19 3r4h_A Coiled coil helix CC-TE 56.0 19 0.00066 21.5 4.0 29 31-59 3-31 (34)
20 2c5k_T Syntaxin TLG1, T-snare 54.2 7.1 0.00024 27.3 2.2 25 30-54 68-92 (95)
21 3sja_C Golgi to ER traffic pro 52.9 49 0.0017 22.2 6.7 51 38-93 7-57 (65)
22 2eqb_B RAB guanine nucleotide 52.5 40 0.0014 24.2 6.0 51 28-95 3-53 (97)
23 4dzn_A Coiled-coil peptide CC- 51.3 24 0.00084 21.0 3.9 24 31-54 3-26 (33)
24 1fmh_A General control protein 51.0 29 0.00099 20.6 4.2 28 25-52 3-30 (33)
25 3gwk_C SAG1039, putative uncha 48.9 50 0.0017 21.1 8.6 71 21-96 6-76 (98)
26 2p4v_A Transcription elongatio 48.3 52 0.0018 24.3 6.3 23 75-97 46-68 (158)
27 3kin_B Kinesin heavy chain; mo 47.5 39 0.0013 24.1 5.3 36 19-54 78-113 (117)
28 4dnd_A Syntaxin-10, SYN10; str 46.2 20 0.00067 26.3 3.6 26 29-54 104-129 (130)
29 4i0x_B ESAT-6-like protein MAB 46.1 29 0.00098 23.1 4.2 72 20-95 8-80 (103)
30 4dzn_A Coiled-coil peptide CC- 43.5 28 0.00097 20.7 3.3 25 27-51 6-30 (33)
31 3fpp_A Macrolide-specific effl 43.1 97 0.0033 23.9 7.4 64 26-94 72-140 (341)
32 2ke4_A CDC42-interacting prote 42.4 67 0.0023 22.5 5.8 34 68-101 62-95 (98)
33 3sjb_C Golgi to ER traffic pro 42.4 90 0.0031 22.2 6.5 52 37-93 23-74 (93)
34 4dyl_A Tyrosine-protein kinase 41.6 1.2E+02 0.0041 25.0 8.1 72 34-106 306-404 (406)
35 2wg5_A General control protein 41.5 28 0.00095 24.5 3.7 26 26-51 10-35 (109)
36 2xdj_A Uncharacterized protein 40.0 45 0.0015 22.9 4.5 18 72-89 38-55 (83)
37 2v71_A Nuclear distribution pr 39.5 1.4E+02 0.0047 23.5 8.4 24 31-54 11-34 (189)
38 1t2k_D Cyclic-AMP-dependent tr 38.0 58 0.002 20.4 4.5 28 26-53 32-59 (61)
39 2xv5_A Lamin-A/C; structural p 36.7 52 0.0018 22.1 4.3 28 27-54 2-29 (74)
40 3iv1_A Tumor susceptibility ge 36.0 33 0.0011 23.8 3.3 56 41-96 15-74 (78)
41 2yy0_A C-MYC-binding protein; 35.3 59 0.002 20.5 4.2 34 64-97 15-48 (53)
42 3oja_B Anopheles plasmodium-re 35.3 1.7E+02 0.0058 24.3 8.1 29 26-54 452-480 (597)
43 3csx_A Putative uncharacterize 35.1 88 0.003 21.8 5.4 57 31-87 16-76 (81)
44 3v86_A De novo design helix; c 34.8 56 0.0019 18.6 3.5 24 26-49 3-26 (27)
45 3zsu_A TLL2057 protein, cyanoq 34.5 34 0.0011 25.6 3.3 48 12-59 1-73 (130)
46 1grj_A GREA protein; transcrip 33.9 1E+02 0.0034 22.6 5.9 22 75-96 46-67 (158)
47 3jsv_C NF-kappa-B essential mo 33.8 1.3E+02 0.0044 21.5 6.2 30 68-97 61-90 (94)
48 1ci6_A Transcription factor AT 33.4 73 0.0025 20.4 4.5 24 28-51 35-58 (63)
49 3qh9_A Liprin-beta-2; coiled-c 31.5 1.3E+02 0.0046 21.0 8.4 58 24-91 20-77 (81)
50 2wt7_B Transcription factor MA 31.3 74 0.0025 22.4 4.5 18 36-53 61-78 (90)
51 2qdq_A Talin-1; dimerisation d 30.9 71 0.0024 20.6 4.0 26 29-54 7-32 (50)
52 3vkg_A Dynein heavy chain, cyt 30.7 1.1E+02 0.0037 33.1 7.3 50 68-122 2014-2064(3245)
53 3h6p_C ESAT-6-like protein ESX 29.1 35 0.0012 22.1 2.4 35 20-54 3-37 (96)
54 3na7_A HP0958; flagellar bioge 28.4 43 0.0015 26.1 3.2 9 35-43 44-52 (256)
55 2z5i_A TM, general control pro 28.4 46 0.0016 21.0 2.8 20 77-96 7-26 (52)
56 2f1m_A Acriflavine resistance 28.2 1.9E+02 0.0064 21.6 6.7 69 24-95 61-132 (277)
57 3vlc_E Golgi to ER traffic pro 27.6 84 0.0029 22.4 4.3 52 37-93 30-81 (94)
58 4hpq_C ATG17, KLTH0D15642P; au 27.5 1.1E+02 0.0039 26.3 5.9 26 80-105 374-399 (413)
59 3m9b_A Proteasome-associated A 27.2 58 0.002 26.8 3.8 31 24-54 55-85 (251)
60 1jnm_A Proto-oncogene C-JUN; B 27.1 51 0.0017 20.8 2.8 27 27-53 33-59 (62)
61 2xus_A Breast cancer metastasi 27.1 35 0.0012 21.9 2.0 18 35-52 30-47 (49)
62 1gax_A Valrs, valyl-tRNA synth 27.0 2.7E+02 0.0092 25.8 8.6 63 28-94 798-861 (862)
63 3vkg_A Dynein heavy chain, cyt 26.4 1.9E+02 0.0066 31.3 8.3 25 70-94 2044-2068(3245)
64 1ci6_A Transcription factor AT 26.2 1.3E+02 0.0045 19.1 4.7 28 28-55 28-55 (63)
65 2wuj_A Septum site-determining 25.9 1.2E+02 0.0041 19.0 4.4 33 22-54 19-51 (57)
66 1zme_C Proline utilization tra 25.4 91 0.0031 18.9 3.7 25 30-54 44-68 (70)
67 2e7s_A RAB guanine nucleotide 25.1 1.4E+02 0.0046 22.5 5.3 48 27-84 12-62 (135)
68 3onj_A T-snare VTI1; helix, HA 23.5 1.8E+02 0.0061 19.8 8.7 67 23-96 27-94 (97)
69 1ykh_B RNA polymerase II holoe 23.5 1.1E+02 0.0038 22.1 4.5 33 79-122 89-121 (132)
70 3azd_A Short alpha-tropomyosin 23.5 40 0.0014 20.0 1.7 20 78-97 7-26 (37)
71 3htk_A Structural maintenance 23.2 1.3E+02 0.0046 18.2 4.6 26 28-53 24-49 (60)
72 1yke_B RNA polymerase II holoe 22.6 1.1E+02 0.0039 22.8 4.5 34 78-122 88-121 (151)
73 1z56_A Ligase interacting fact 22.5 30 0.001 28.7 1.3 63 60-122 155-225 (246)
74 1x8y_A Lamin A/C; structural p 22.3 1.5E+02 0.005 19.9 4.6 26 29-54 27-52 (86)
75 3na7_A HP0958; flagellar bioge 21.9 2.8E+02 0.0094 21.4 8.2 24 30-53 32-55 (256)
76 4h63_H Mediator of RNA polymer 21.1 1.2E+02 0.0042 23.6 4.5 30 25-55 7-36 (200)
77 3axj_A GM27569P, translin; tra 20.2 3.2E+02 0.011 21.5 8.1 67 27-99 26-95 (249)
78 1ik9_A DNA repair protein XRCC 20.0 1.9E+02 0.0066 22.5 5.5 13 110-122 181-193 (213)
No 1
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=92.37 E-value=1.3 Score=33.61 Aligned_cols=74 Identities=8% Similarity=0.056 Sum_probs=49.3
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le 95 (139)
.+|+..+.++++.++..+...+.++...+.++.=.+.=+-.+..--.+.-....+|+.|+..++..+.+|+.+.
T Consensus 52 ~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~ 125 (277)
T 2f1m_A 52 QIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETAR 125 (277)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999998888877522111111112233445556677777777766666665443
No 2
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=91.37 E-value=1.3 Score=34.95 Aligned_cols=73 Identities=10% Similarity=0.191 Sum_probs=45.6
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccC------c-CCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRG------L-VPMGTRLAEMARMRLEYDETRKRIQIIQTQLADL 94 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G------~-~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~l 94 (139)
.+|+..+..++..++..+..++.++.+.+.++...+.- + -.+...-.+.-....+|+.|+..++.++.++..+
T Consensus 62 ~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~ 141 (369)
T 4dk0_A 62 EIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQA 141 (369)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999888888888888888888888777744432 1 1111112233334455666666665555554443
No 3
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.65 E-value=3.6 Score=30.60 Aligned_cols=56 Identities=14% Similarity=0.303 Sum_probs=37.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHh-HhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 30 SDVALARDRVSRLKRELEQIRTEMN-YTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 30 aeia~ar~Rv~rLKrEl~q~~~El~-yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
.|.-.++..+..|..++..+..|+. ||. |-+.+..+|+++++.+..++.++..|+.
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~-----------el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKH-----------ELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777777777777765 443 4667777787777776666666655554
No 4
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=86.92 E-value=2.5 Score=32.98 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=27.5
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhH
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMNY 55 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~y 55 (139)
.+|+..+.+++..++..+..++.++.+.+.++..
T Consensus 61 ~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~ 94 (341)
T 3fpp_A 61 VIDPEQAENQIKEVEATLMELRAQRQQAEAELKL 94 (341)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899988888888888888888888777777653
No 5
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=84.60 E-value=0.88 Score=29.16 Aligned_cols=30 Identities=23% Similarity=0.491 Sum_probs=24.7
Q ss_pred CCCccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 19 ASTKYDVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 19 ~stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
+.+-.|-|.+|.|| +..+|+|+.+||+|+-
T Consensus 3 ~~~~~dle~~KqEI------L~E~RkElqK~K~EII 32 (45)
T 1use_A 3 SSDYSDLQRVKQEL------LEEVKKELQKVKEEII 32 (45)
T ss_dssp CCCHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 45568899999999 5688999999998874
No 6
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.30 E-value=1.6 Score=28.06 Aligned_cols=36 Identities=11% Similarity=0.374 Sum_probs=31.5
Q ss_pred CCCccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 19 ASTKYDVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 19 ~stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
+++.-|-|-||.|++..|.|+..|+.++...+..|-
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456679999999999999999999999999888764
No 7
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=75.90 E-value=13 Score=23.86 Aligned_cols=70 Identities=6% Similarity=0.058 Sum_probs=43.6
Q ss_pred CccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 21 TKYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 21 tKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le 95 (139)
-+|||+.|..-....+....+|...|.+++..+.-=..+.- +.. .....-.+.+++.....+...|..+-
T Consensus 3 i~v~~~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~-G~A----~~af~~~~~~w~~~~~~~~~~L~~i~ 72 (94)
T 3fav_B 3 QQWNFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWG-GSG----SEAYQGVQQKWDATATELNNALQNLA 72 (94)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGT-CTT----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-cHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999998874433321 111 12234455666666666666665553
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.34 E-value=20 Score=30.00 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
+.++.++...+.|...+.+++...+++..-++.-+- .-=.|+.++.-++++.++++..++++++.+..
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~ 572 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETE---DLEQENIALEKQLDNKRAKQAELRQETSLKRQ 572 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchh---hHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 567777777777777666666666655532211100 00024667777888888888888887776643
No 9
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=71.55 E-value=17 Score=23.08 Aligned_cols=71 Identities=6% Similarity=0.124 Sum_probs=50.1
Q ss_pred CCccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 20 STKYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 20 stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le 95 (139)
.-++||+.|.+-....+.-...|...+..+.+.+..=..+ -.+.+. ....-.|.+++..+..+..-|..+-
T Consensus 3 ~i~v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~-W~G~a~----~af~~~~~~~~~~~~~~~~~L~~i~ 73 (97)
T 2vs0_A 3 MIKMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAAN-WEGQAF----SRFEEQFQQLSPKVEKFAQLLEEIK 73 (97)
T ss_dssp CBCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCSSTT----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999998999999999999888754432 222222 3344566677777777766666554
No 10
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=71.21 E-value=25 Score=25.97 Aligned_cols=65 Identities=17% Similarity=0.129 Sum_probs=50.6
Q ss_pred cChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 23 YDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 23 yDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e 97 (139)
+|--.++.++...+..+..+.+|+..++.|+.-.+. ..--+.-++++.++++..++.++++|+.+
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~----------k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQI----------KAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567778888888888888888888888875543 24456778899999999999999998764
No 11
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.81 E-value=9.4 Score=27.52 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccC---------------------cCCCCCcHHHHHHHHHhHHHHHHHH
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIRTEMNYTQRG---------------------LVPMGTRLAEMARMRLEYDETRKRI 84 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G---------------------~~~~~~~LaEkvRl~lqYeEArkrv 84 (139)
+.+|.+|.....++.-...|+..+..++.=...- ||.--|..+-.+ +.....+.+++
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a--r~e~~~~e~kn 85 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA--RKEKYAIEILN 85 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 3456666666666666666666665555422111 333333333233 34556666777
Q ss_pred HHHHHHHHhhh
Q psy16169 85 QIIQTQLADLE 95 (139)
Q Consensus 85 ~~iq~qLa~le 95 (139)
..|+.||.+-|
T Consensus 86 ~~L~~qL~d~d 96 (97)
T 2eqb_B 86 KRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 77777776644
No 12
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=69.14 E-value=34 Score=27.29 Aligned_cols=65 Identities=11% Similarity=0.145 Sum_probs=46.2
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLAD 93 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~ 93 (139)
.+|+..+.++++.|+..+...+.++...+. .|+ .|+++ -.+.-....+|+.|+..+...+.+|..
T Consensus 73 ~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~--L~~-~g~is----~~~~~~a~~~~~~a~a~l~~a~~~l~~ 137 (369)
T 1vf7_A 73 QIDPATYEADYQSAQANLASTQEQAQRYKL--LVA-DQAVS----KQQYADANAAYLQSKAAVEQARINLRY 137 (369)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-TTSSC----HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EECcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-CCCcC----HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 689999999999999999999888876553 343 34432 234445556777777777777777654
No 13
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=65.82 E-value=28 Score=23.53 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhcc-C--cCCCCCcH
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIRTEMNYTQR-G--LVPMGTRL 67 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~-G--~~~~~~~L 67 (139)
+.++.++...+.+...++.++.+.+..+..=+. | ++-.|+.+
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l 57 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGREL 57 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcC
Confidence 455666666777777777777777777764443 4 44455544
No 14
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=63.49 E-value=25 Score=27.43 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le 95 (139)
.+++++.++..+...++++...+. .| +.|+.+.. +.-....+|+.|+..+...+.+|+.+.
T Consensus 96 a~~~l~~a~a~l~~a~~~~~r~~~--L~-~~~~~s~~----~~~~a~~~~~~a~a~l~~a~~~l~~~~ 156 (359)
T 3lnn_A 96 ANSDAAKARAAMTMARRNLDRQRE--LD-KSEIAAKR----DFEQAQSDYDQAASESQRADARLAQLG 156 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--TT-SSSCCCCT----THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HH-HcCCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356666666666555555554332 12 23443322 334456677777777777777777654
No 15
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=61.66 E-value=34 Score=23.43 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=39.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHH----HhHHHHHHHHHHH
Q psy16169 31 DVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMR----LEYDETRKRIQII 87 (139)
Q Consensus 31 eia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~----lqYeEArkrv~~i 87 (139)
||..-|.+|.||++--.|++-+|+-=-.|++.+=..+.+-++-- -.+++||++++.+
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 64 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASL 64 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677888999999999999977778877778876665432 3445555554444
No 16
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=57.68 E-value=65 Score=25.07 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhHh----HhccCcCCCCCc---HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 25 VDLLKSDVALARDRVSRLKRELEQIRTEMN----YTQRGLVPMGTR---LAEMARMRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 25 Pd~lkaeia~ar~Rv~rLKrEl~q~~~El~----yke~G~~~~~~~---LaEkvRl~lqYeEArkrv~~iq~qLa~le~e 97 (139)
=.+.+++++.++..+...+.++...+.++. -.+.|.++...- -++......+++.++..+...+.+|..+...
T Consensus 72 l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~ 151 (369)
T 4dk0_A 72 LNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETN 151 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888888888887776665 234554433222 2344555667788888888888777766543
No 17
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=57.26 E-value=34 Score=21.65 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=48.2
Q ss_pred CCccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 20 STKYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 20 stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
.-++||+.|..-....+.=...|...+..+...+..=..+. .+ +......-.|.+++..+.++..-|..+-.
T Consensus 6 ~i~v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W-~G----~a~~af~~~~~~~~~~~~~~~~~L~~i~~ 77 (99)
T 3zbh_A 6 VIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIW-EG----ASSEAFIQQYQELRPSFEKMAVLLNEVGQ 77 (99)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999888888888888888888888777543221 11 12445566777787777777777666543
No 18
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=56.77 E-value=38 Score=22.08 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=40.8
Q ss_pred CCccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 20 STKYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 20 stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
.-+|||+.|..-......=..+|...|.+++.++.-=..+. .+ .-.....-.+.+++.....+..-|.++-.
T Consensus 4 ~i~v~~~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W-~G----~A~~af~~~~~~w~~~~~~l~~~L~~i~~ 75 (101)
T 3fav_A 4 EMKTDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQW-RG----AAGTAAQAAVVRFQEAANKQKQELDEIST 75 (101)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC-CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-ch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999998777777777777777777777764222221 00 12345566677788777777777776644
No 19
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=55.96 E-value=19 Score=21.52 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=17.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHhHhccC
Q psy16169 31 DVALARDRVSRLKRELEQIRTEMNYTQRG 59 (139)
Q Consensus 31 eia~ar~Rv~rLKrEl~q~~~El~yke~G 59 (139)
|++.-|.-+.-+|.||+-++-||..-++|
T Consensus 3 elaaikqelaaikkelaaikfelaaikqg 31 (34)
T 3r4h_A 3 ELAAIKQELAAIKKELAAIKFELAAIKQG 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45555666666677777777666644443
No 20
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=54.23 E-value=7.1 Score=27.30 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=22.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 30 SDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 30 aeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
+||+.+|..|..|++++.+|+.++.
T Consensus 68 ~EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 68 EDVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4778899999999999999999874
No 21
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=52.86 E-value=49 Score=22.21 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy16169 38 RVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLAD 93 (139)
Q Consensus 38 Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~ 93 (139)
....|++|+-+++.|+ +-+|....+|-=+||+-+++-....+..+..+|+.
T Consensus 7 ~~~~l~~E~~~lk~E~-----~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 7 KYLAKVKERHELKEFN-----NSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHH-----TTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456777777776665 45788999999999999999999999988888765
No 22
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.55 E-value=40 Score=24.17 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le 95 (139)
|..+...+|.++.+|..++..+..|+ .+|.-.+.+.+.+......+...++
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~-----------------~~L~~~l~eE~~~R~~aE~~~~~ie 53 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEV-----------------KRLREDIAKENELRTKAEEEADKLN 53 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788888888888888866554 4555555555554444444444433
No 23
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=51.28 E-value=24 Score=20.96 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=11.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 31 DVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 31 eia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
||+.-|.-+.-||.|.+-++-|+.
T Consensus 3 eiaalkqeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555544444443
No 24
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=50.95 E-value=29 Score=20.64 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q psy16169 25 VDLLKSDVALARDRVSRLKRELEQIRTE 52 (139)
Q Consensus 25 Pd~lkaeia~ar~Rv~rLKrEl~q~~~E 52 (139)
--+|..|+|+|..--..|.+|.+|+..|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3578889999998888899998888765
No 25
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=48.87 E-value=50 Score=21.14 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=46.8
Q ss_pred CccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 21 TKYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 21 tKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
-+.||+.|+.--...+.=...+...|..++..+..=..+. .+.+ .....-+|.+++..+.++..-|..+..
T Consensus 6 i~V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W-~G~a----~~aF~~~~~~~~~~~~~~~~~L~~i~~ 76 (98)
T 3gwk_C 6 IKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENW-DGST----FDSFEAQFNELSPKITEFAQLLEDINQ 76 (98)
T ss_dssp BCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHB-CSST----THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999998777777777777777777777766433221 1111 245566777888887777777666543
No 26
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=48.25 E-value=52 Score=24.32 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=19.8
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 75 LEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 75 lqYeEArkrv~~iq~qLa~le~e 97 (139)
-.|+.||++.+.+...++.|+..
T Consensus 46 aeY~aak~~q~~~e~rI~~L~~~ 68 (158)
T 2p4v_A 46 ADYQYNKKRLREIDRRVRYLTKC 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999988888875
No 27
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=47.53 E-value=39 Score=24.06 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=31.4
Q ss_pred CCCccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 19 ASTKYDVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 19 ~stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
.+...|++.++..+..-..++..|+..+.+++.|+.
T Consensus 78 ~n~~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 78 VNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455789999999999999999999999999988875
No 28
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=46.22 E-value=20 Score=26.30 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=23.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 29 KSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 29 kaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
.+||+.+|.-|..++.++.+|+.+|.
T Consensus 104 ~~Ei~~Rr~fV~~~r~~I~~mk~~l~ 129 (130)
T 4dnd_A 104 AGDLQERKVFVERMREAVQEMKDHMV 129 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56899999999999999999999874
No 29
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=46.08 E-value=29 Score=23.14 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=49.1
Q ss_pred CCccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhH-hccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 20 STKYDVDLLKSDVALARDRVSRLKRELEQIRTEMNY-TQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 20 stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~y-ke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le 95 (139)
.-+|||+.|..=....+.-..+|..+|.+++..+.= ...||-.+. -..-..-.+.+++.....+..-|..+-
T Consensus 8 ~i~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~----A~~ay~~~~~~W~~~a~~l~~~L~~i~ 80 (103)
T 4i0x_B 8 EFSFDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGA----AAAAYSQAHKEWMDAARELVEGLSQME 80 (103)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeech----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999888862 222222221 123344556666666677766666554
No 30
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=43.53 E-value=28 Score=20.67 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRT 51 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~ 51 (139)
-||.||+.-|.-+.-||=|.+-++|
T Consensus 6 alkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788888888888888888888776
No 31
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=43.06 E-value=97 Score=23.85 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHh-----HhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIRTEMN-----YTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADL 94 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~~El~-----yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~l 94 (139)
.+++++++.++..+...+.++...+.++. |+ .|.++. .+.-....+|+.++..++.++.+++.+
T Consensus 72 ~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~-~~~~s~----~~~~~a~~~~~~~~a~l~~~~a~l~~a 140 (341)
T 3fpp_A 72 KEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQ-TQAVSQ----QDLDNAATEMAVKQAQIGTIDAQIKRN 140 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TSSSTT----HHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888777776665 33 244331 222333344555555555555554443
No 32
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=42.42 E-value=67 Score=22.55 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhccCCC
Q psy16169 68 AEMARMRLEYDETRKRIQIIQTQLADLEEKVTPG 101 (139)
Q Consensus 68 aEkvRl~lqYeEArkrv~~iq~qLa~le~e~wPG 101 (139)
++...+...-+--+-.+..+|.-|+.+|...-||
T Consensus 62 ~~L~e~~~kid~L~~el~K~q~~L~e~e~~~~~~ 95 (98)
T 2ke4_A 62 PQIAETLSNIERLKLEVQKYEAWLAEAESRVLSN 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCC
Confidence 4444444455555555666666677777654333
No 33
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=42.39 E-value=90 Score=22.23 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=42.3
Q ss_pred HhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy16169 37 DRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLAD 93 (139)
Q Consensus 37 ~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~ 93 (139)
.....|++|+-+++.|+ |-+|....+|-=+||+-++|-....+..+..+|+.
T Consensus 23 ~~~~~lk~E~~~lk~E~-----~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFN-----NSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHH-----TTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777665 45788899999999999999999999988888764
No 34
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=41.57 E-value=1.2e+02 Score=24.98 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=42.5
Q ss_pred HHHHhHHHHHHHHHHHHHhHhHhccC-------------cCCCCCcHHHHHHHHHhHHHHHHHHHH--------------
Q psy16169 34 LARDRVSRLKRELEQIRTEMNYTQRG-------------LVPMGTRLAEMARMRLEYDETRKRIQI-------------- 86 (139)
Q Consensus 34 ~ar~Rv~rLKrEl~q~~~El~yke~G-------------~~~~~~~LaEkvRl~lqYeEArkrv~~-------------- 86 (139)
.-++||.+++.+|...+.++.-|++. -...+.+ ++.++-..-++|+...|+.
T Consensus 306 ~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~ 384 (406)
T 4dyl_A 306 SVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRER-VQLLGKRQVLQEALQGLQVALCSQAKLQAQQEL 384 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCG-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchH-HHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45666777777777777776655553 0233444 4455555556666666554
Q ss_pred HHHHHHhhhhccCCCCccCC
Q psy16169 87 IQTQLADLEEKVTPGQAESD 106 (139)
Q Consensus 87 iq~qLa~le~e~wPG~~e~d 106 (139)
|+..|+.|..+.=|..+..+
T Consensus 385 ~~~~~~~~~~~~~p~~~~~~ 404 (406)
T 4dyl_A 385 LQTKLEHLGPGEPPPVLLLQ 404 (406)
T ss_dssp HHHHHHTTTTSCCCCCCCC-
T ss_pred HHHHHHhcCCCCCCCcCCCC
Confidence 45557777777777655543
No 35
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=41.48 E-value=28 Score=24.47 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIRT 51 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~~ 51 (139)
.+|++++..++.++.+||.|+..+++
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57888888888888888888887764
No 36
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=39.97 E-value=45 Score=22.90 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=7.5
Q ss_pred HHHHhHHHHHHHHHHHHH
Q psy16169 72 RMRLEYDETRKRIQIIQT 89 (139)
Q Consensus 72 Rl~lqYeEArkrv~~iq~ 89 (139)
+|+=+-|+....+..++.
T Consensus 38 ~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 38 SLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 344444444444444433
No 37
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=39.51 E-value=1.4e+02 Score=23.46 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=12.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 31 DVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 31 eia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
||+-=|.+..+++.++.+++.|+.
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~ 34 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELV 34 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544
No 38
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.97 E-value=58 Score=20.41 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIRTEM 53 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~~El 53 (139)
+.|..+...-+..|..|+.|+.++++-|
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666666666544
No 39
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=36.72 E-value=52 Score=22.12 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
.|..|.+.....+..|..+|.++++++.
T Consensus 2 ~l~~e~~~~~~~i~~lE~eL~~~r~e~~ 29 (74)
T 2xv5_A 2 GSARERDTSRRLLAEKEREMAEMRARMQ 29 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888999999999999999998875
No 40
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=35.96 E-value=33 Score=23.75 Aligned_cols=56 Identities=29% Similarity=0.475 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhHh---HhccCcCCCCCcHHHHH-HHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 41 RLKRELEQIRTEMN---YTQRGLVPMGTRLAEMA-RMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 41 rLKrEl~q~~~El~---yke~G~~~~~~~LaEkv-Rl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
||+-.+.|.+.||+ -++..|..++++|-+|+ ||--+-.+..+-|..++...+.|+.
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888887 34445667777777765 4555555666667777777766664
No 41
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.33 E-value=59 Score=20.52 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 64 GTRLAEMARMRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 64 ~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e 97 (139)
+..-+|--.|+.+.++.+.++..++.+++.|..+
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777778888888888888777776553
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.27 E-value=1.7e+02 Score=24.29 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
+++.+|+...+.-+.+|+.++.+....++
T Consensus 452 e~l~~e~~~~~~~i~~l~~~~~~~~~~l~ 480 (597)
T 3oja_B 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQ 480 (597)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444444
No 43
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=35.14 E-value=88 Score=21.82 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=36.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHH----HhHHHHHHHHHHH
Q psy16169 31 DVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMR----LEYDETRKRIQII 87 (139)
Q Consensus 31 eia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~----lqYeEArkrv~~i 87 (139)
||..-|.+|.||++--.|++-+||-=-.|++.+=..+.+-++-- -.+++||++++..
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 76 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIW 76 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677788888888999999877777777777776655422 2344555554433
No 44
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=34.76 E-value=56 Score=18.64 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q psy16169 26 DLLKSDVALARDRVSRLKRELEQI 49 (139)
Q Consensus 26 d~lkaeia~ar~Rv~rLKrEl~q~ 49 (139)
.|||.|+..-+.-|.-||.|...+
T Consensus 3 yqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 3 YQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhHHHHHHHHHhcc
Confidence 367777777777777777666543
No 45
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=34.53 E-value=34 Score=25.60 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=29.1
Q ss_pred cccCCC-CC--CCccChHHHH------HHHHHHHHhHHHHHHH----------------HHHHHHhHhHhccC
Q psy16169 12 LCSSSS-SA--STKYDVDLLK------SDVALARDRVSRLKRE----------------LEQIRTEMNYTQRG 59 (139)
Q Consensus 12 l~S~sS-s~--stKyDPd~lk------aeia~ar~Rv~rLKrE----------------l~q~~~El~yke~G 59 (139)
+|||.+ .+ ..-|-|++|- ..|..+|+|+..|+.= |.+++++|.|=-..
T Consensus 1 sC~~p~a~~~~pptysp~~i~~iq~y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~ 73 (130)
T 3zsu_A 1 GSGGPSATTPPPPTYSELQITRIQDYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRN 73 (130)
T ss_dssp -----------CCCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHh
Confidence 467765 23 5689999874 5788999999988753 45666677664443
No 46
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=33.94 E-value=1e+02 Score=22.62 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHHHHHHhhhh
Q psy16169 75 LEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 75 lqYeEArkrv~~iq~qLa~le~ 96 (139)
-.|..||++.+.+...++.|+.
T Consensus 46 aeY~aak~~q~~~e~ri~~Le~ 67 (158)
T 1grj_A 46 AEYHAAREQQGFCEGRIKDIEA 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHH
Confidence 5799999665555555555544
No 47
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=33.75 E-value=1.3e+02 Score=21.51 Aligned_cols=30 Identities=7% Similarity=0.160 Sum_probs=20.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 68 AEMARMRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 68 aEkvRl~lqYeEArkrv~~iq~qLa~le~e 97 (139)
+++-|+.-..++-...+..+|.++..|..+
T Consensus 61 adREkl~~eKe~L~~ql~~lq~q~~~L~~~ 90 (94)
T 3jsv_C 61 HAREKLVEKKEYLQEQLEQLQREFNKLKVG 90 (94)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888888888888888777663
No 48
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=33.41 E-value=73 Score=20.36 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRT 51 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~ 51 (139)
|..+...-+.+|..|++|+.++++
T Consensus 35 L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 35 LEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555444443
No 49
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=31.49 E-value=1.3e+02 Score=20.99 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16169 24 DVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQL 91 (139)
Q Consensus 24 DPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qL 91 (139)
|.+-|.-||-.-|-||..|-+|-.|-...|..++ +|-+-|..|.++--..|..+|.+|
T Consensus 20 ~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK----------~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 20 KAEELLQELRHLKIKVEELENERNQYEWKLKATK----------AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3456778888888888888888776666665544 455555555555555555555554
No 50
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.25 E-value=74 Score=22.37 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=7.7
Q ss_pred HHhHHHHHHHHHHHHHhH
Q psy16169 36 RDRVSRLKRELEQIRTEM 53 (139)
Q Consensus 36 r~Rv~rLKrEl~q~~~El 53 (139)
..-+..|++|++++..|+
T Consensus 61 ~~e~~~L~~e~~~~~~e~ 78 (90)
T 2wt7_B 61 IQQVEQLKQEVSRLARER 78 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 51
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=30.92 E-value=71 Score=20.60 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=17.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 29 KSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 29 kaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
++....|++.|-|..|||...+.-|.
T Consensus 7 ~aqEi~Aqe~iLr~ErELEeAr~~La 32 (50)
T 2qdq_A 7 IAQIIAAQEEMLRKERELEEARKKLA 32 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777776666554
No 52
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=30.69 E-value=1.1e+02 Score=33.07 Aligned_cols=50 Identities=20% Similarity=0.318 Sum_probs=30.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhccCCCCccCCcch-hhhhHHHHHHHhh
Q psy16169 68 AEMARMRLEYDETRKRIQIIQTQLADLEEKVTPGQAESDKDR-LILFQEKEQLLRS 122 (139)
Q Consensus 68 aEkvRl~lqYeEArkrv~~iq~qLa~le~e~wPG~~e~drDr-L~Li~EKE~LL~E 122 (139)
++.+.+.-++++|+.+++.++.+|+.++++. +.=++. =..+.||++|-.|
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l-----~~L~~~~~~~~~ek~~L~~e 2064 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSI-----ATYKEEYATLIRETEQIKTE 2064 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777777632 111111 2457788777766
No 53
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=29.10 E-value=35 Score=22.11 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=16.3
Q ss_pred CCccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 20 STKYDVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 20 stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
.-+|||+.|..=....+.-..+|..+|.+++..+.
T Consensus 3 ~i~v~~~~~~~~a~~i~~~~~~i~~~l~~l~~~v~ 37 (96)
T 3h6p_C 3 QIMYNYPAMMAHAGDMAGYAGTLQSLGADIASEQA 37 (96)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHH
T ss_pred ceeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999888888889999999999998887
No 54
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.45 E-value=43 Score=26.07 Aligned_cols=9 Identities=11% Similarity=0.235 Sum_probs=3.2
Q ss_pred HHHhHHHHH
Q psy16169 35 ARDRVSRLK 43 (139)
Q Consensus 35 ar~Rv~rLK 43 (139)
.+.++..++
T Consensus 44 l~~~~~~~~ 52 (256)
T 3na7_A 44 KNKAILNLE 52 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 55
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=28.40 E-value=46 Score=20.96 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy16169 77 YDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 77 YeEArkrv~~iq~qLa~le~ 96 (139)
-+.|-|.|+.+|..+.+||+
T Consensus 7 aefAERsV~KLek~ID~LEd 26 (52)
T 2z5i_A 7 NYHLENEVARLKKLVDDLED 26 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999998
No 56
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=28.20 E-value=1.9e+02 Score=21.58 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCC---cHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 24 DVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGT---RLAEMARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 24 DPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~---~LaEkvRl~lqYeEArkrv~~iq~qLa~le 95 (139)
+-...+++++.++..+...+.++...+. .|+ .|+++... .-++......+++.|+..+...+.+|....
T Consensus 61 ~l~~a~a~l~~a~a~l~~a~~~~~r~~~--L~~-~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~ 132 (277)
T 2f1m_A 61 TYDSAKGDLAKAQAAANIAQLTVNRYQK--LLG-TQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTK 132 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTT-STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCE
Confidence 3457788899999999988888877653 233 45432211 112334456678888888888888876543
No 57
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=27.56 E-value=84 Score=22.44 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=40.6
Q ss_pred HhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy16169 37 DRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLAD 93 (139)
Q Consensus 37 ~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~ 93 (139)
.....|++|+-+++.|+ +-+|....+|-=+||+-++|-....+..+..+|+.
T Consensus 30 ~~~~~lk~E~~~lk~E~-----~stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~L~s 81 (94)
T 3vlc_E 30 KKYLAKVKERHELKEFN-----NSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHH-----TTSCTTTCHHHHHHHHHHHHHHHHHTTTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHH-----hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788887777766 45788899999999999999888888777776643
No 58
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=27.53 E-value=1.1e+02 Score=26.34 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCccC
Q psy16169 80 TRKRIQIIQTQLADLEEKVTPGQAES 105 (139)
Q Consensus 80 Arkrv~~iq~qLa~le~e~wPG~~e~ 105 (139)
.++|-+=++..=.=|=..+|||..|.
T Consensus 374 ~~~Re~F~~~~G~yLP~diwpg~idd 399 (413)
T 4hpq_C 374 LRERQMFLLENGNYLPETIWPDEIGS 399 (413)
T ss_dssp HHHHHHHHHHSSSSSCGGGSTTTSSC
T ss_pred HHHHHHHHHHhcccCChhhCCCcccC
Confidence 33333333333333445589998875
No 59
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.19 E-value=58 Score=26.81 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 24 DVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 24 DPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
+...|..++.....|..+|+.+|...+.|+.
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~ 85 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLL 85 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777776666666666665555554
No 60
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.14 E-value=51 Score=20.80 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhH
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEM 53 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El 53 (139)
.|.++-..-+..|..|+.|+.++++.|
T Consensus 33 ~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 33 TLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555666655555443
No 61
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=27.10 E-value=35 Score=21.85 Aligned_cols=18 Identities=39% Similarity=0.663 Sum_probs=13.8
Q ss_pred HHHhHHHHHHHHHHHHHh
Q psy16169 35 ARDRVSRLKRELEQIRTE 52 (139)
Q Consensus 35 ar~Rv~rLKrEl~q~~~E 52 (139)
=++|++.|+++|.++++.
T Consensus 30 Y~ERl~ql~~~Leel~~g 47 (49)
T 2xus_A 30 FRERLSQLRLRLEEVGAE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 467999999999998763
No 62
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=26.99 E-value=2.7e+02 Score=25.77 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCC-CCcHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPM-GTRLAEMARMRLEYDETRKRIQIIQTQLADL 94 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~-~~~LaEkvRl~lqYeEArkrv~~iq~qLa~l 94 (139)
+.+|++.-...+.++..|+..+...|.- .||+.. .....++. +-+.++++.+++.++.+|+.|
T Consensus 798 ~~~~~~rl~k~~~~~~~~~~~~~~~l~~--~~f~~~ap~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 861 (862)
T 1gax_A 798 VEEWRRRQEKRLKELLALAERSQRKLAS--PGFREKAPKEVVEAE--EARLKENLEQAERIREALSQI 861 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS--TTTSSSSCTTHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC--chhhhhCCHHHHHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 3455544444455555555554444331 345322 23333433 344567888888888888775
No 63
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.38 E-value=1.9e+02 Score=31.26 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=15.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhh
Q psy16169 70 MARMRLEYDETRKRIQIIQTQLADL 94 (139)
Q Consensus 70 kvRl~lqYeEArkrv~~iq~qLa~l 94 (139)
-..|.-+|+++.++.+.|+.++...
T Consensus 2044 l~~L~~~~~~~~~ek~~L~~e~~~~ 2068 (3245)
T 3vkg_A 2044 IATYKEEYATLIRETEQIKTESSKV 2068 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666665443
No 64
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.17 E-value=1.3e+02 Score=19.13 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhH
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTEMNY 55 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~El~y 55 (139)
|..++..-..+-..|+.+++.++.|+.|
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555555544
No 65
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.89 E-value=1.2e+02 Score=18.99 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=19.8
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
-|||+.+-+=+...-.-+..|.+|....+.++.
T Consensus 19 GY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 19 GYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588877666555555555555555555555543
No 66
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=25.43 E-value=91 Score=18.87 Aligned_cols=25 Identities=4% Similarity=0.065 Sum_probs=18.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 30 SDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 30 aeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
..|.....||..|...|.+++..|+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467778888888888888877653
No 67
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.07 E-value=1.4e+02 Score=22.50 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhHHHHH---HHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHH
Q psy16169 27 LLKSDVALARDRVSRLK---RELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRI 84 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLK---rEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv 84 (139)
..+.+|+..+.|+..|- .++.++..++. ..-.+..+|.-.+.+.+.+.
T Consensus 12 ~~r~~l~~~~~~~~~le~l~~~l~~l~~~l~----------~~~~e~~~L~~~l~eE~~~R 62 (135)
T 2e7s_A 12 KSLKTIASQKAAIENYNQLKEDYNTLKRELS----------DRDDEVKRLREDIAKENELR 62 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------THHHHHHTHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHH
Confidence 35677888888776544 46666555442 23345555655555544443
No 68
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=23.53 E-value=1.8e+02 Score=19.76 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=55.3
Q ss_pred cChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHH-HHHHHHhhhh
Q psy16169 23 YDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQI-IQTQLADLEE 96 (139)
Q Consensus 23 yDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~-iq~qLa~le~ 96 (139)
.+.+.=|+-|..+...+.....=|.||.-|++.- +++-+.+..++-+..+.|+.+.+ ++.++.+|-+
T Consensus 27 ~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~-------~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 27 QPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNS-------IGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456778888888888888888899999998763 23446789999999999999999 9999998865
No 69
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.49 E-value=1.1e+02 Score=22.13 Aligned_cols=33 Identities=27% Similarity=0.645 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCccCCcchhhhhHHHHHHHhh
Q psy16169 79 ETRKRIQIIQTQLADLEEKVTPGQAESDKDRLILFQEKEQLLRS 122 (139)
Q Consensus 79 EArkrv~~iq~qLa~le~e~wPG~~e~drDrL~Li~EKE~LL~E 122 (139)
+--+||+.|+.++...+. .+-..++|+|.||+.
T Consensus 89 ~Q~~ri~~L~~E~~~~~~-----------el~~~v~e~e~ll~~ 121 (132)
T 1ykh_B 89 EQLRKIDMLQKKLVEVED-----------EKIEAIKKKEKLMRH 121 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 445678888887776655 466788999999987
No 70
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=23.49 E-value=40 Score=19.96 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q psy16169 78 DETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 78 eEArkrv~~iq~qLa~le~e 97 (139)
+.-+|+|+.+|.++..++++
T Consensus 7 ~avKkKiq~lq~q~d~aee~ 26 (37)
T 3azd_A 7 EAVRRKIRSLQEQNYHLENE 26 (37)
T ss_dssp HHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44578899999988777664
No 71
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=23.18 E-value=1.3e+02 Score=18.20 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhH
Q psy16169 28 LKSDVALARDRVSRLKRELEQIRTEM 53 (139)
Q Consensus 28 lkaeia~ar~Rv~rLKrEl~q~~~El 53 (139)
+++++..++.++.++..++..++.++
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~~~~~I 49 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNTIRDEV 49 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555544444444444
No 72
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.63 E-value=1.1e+02 Score=22.76 Aligned_cols=34 Identities=29% Similarity=0.664 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCccCCcchhhhhHHHHHHHhh
Q psy16169 78 DETRKRIQIIQTQLADLEEKVTPGQAESDKDRLILFQEKEQLLRS 122 (139)
Q Consensus 78 eEArkrv~~iq~qLa~le~e~wPG~~e~drDrL~Li~EKE~LL~E 122 (139)
++--+||+.|+.++...+. .+-..++|+|.||+.
T Consensus 88 eeQ~~ri~~Le~E~~~~~~-----------el~~~v~eae~ll~~ 121 (151)
T 1yke_B 88 EEQLRKIDMLQKKLVEVED-----------EKIEAIKKKEKLLRH 121 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 3445678888888777665 466788999999987
No 73
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=22.49 E-value=30 Score=28.67 Aligned_cols=63 Identities=16% Similarity=0.289 Sum_probs=38.3
Q ss_pred cCCCCCcH-HHHHHHHHhHHHHHHHHHHHHHHHHhhhhcc-CCCCccCCcch------hhhhHHHHHHHhh
Q psy16169 60 LVPMGTRL-AEMARMRLEYDETRKRIQIIQTQLADLEEKV-TPGQAESDKDR------LILFQEKEQLLRS 122 (139)
Q Consensus 60 ~~~~~~~L-aEkvRl~lqYeEArkrv~~iq~qLa~le~e~-wPG~~e~drDr------L~Li~EKE~LL~E 122 (139)
||...+.| -+-+-++-+|..+.+.+..++.||..+-..- -=-++=-.||. ..|+|||..=.++
T Consensus 155 LFewA~~L~q~i~~ln~k~~~~E~si~~L~~qLeElv~~k~~~dqLi~~RD~~tR~~fv~LLNEKK~KIR~ 225 (246)
T 1z56_A 155 LFEMADKLYKDICCVNDSYRNIKESDSSNRNRVEQLARERELLDKLLETRDERTRAMMVTLLNEKKKKIRE 225 (246)
T ss_dssp ----CTTSGGGTTHHHHHHHHTTTTTTHHHHHHHHTTTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHhHHHHHHHH
Confidence 34444433 2456789999999999999999998775420 00011111222 4488999998888
No 74
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=22.34 E-value=1.5e+02 Score=19.92 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=19.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 29 KSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 29 kaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
..++......+..|..+|.++++++.
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~ 52 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQ 52 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888888888888765
No 75
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.91 E-value=2.8e+02 Score=21.38 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=9.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhH
Q psy16169 30 SDVALARDRVSRLKRELEQIRTEM 53 (139)
Q Consensus 30 aeia~ar~Rv~rLKrEl~q~~~El 53 (139)
+||+.....+..|+..+..++.++
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l 55 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEK 55 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 76
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=21.13 E-value=1.2e+02 Score=23.59 Aligned_cols=30 Identities=13% Similarity=0.276 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhHhH
Q psy16169 25 VDLLKSDVALARDRVSRLKRELEQIRTEMNY 55 (139)
Q Consensus 25 Pd~lkaeia~ar~Rv~rLKrEl~q~~~El~y 55 (139)
++++++ +...|.|++.|+..|..+...|..
T Consensus 7 ~~~~~~-LEs~R~Rl~qL~~Sl~~l~~~l~~ 36 (200)
T 4h63_H 7 EKTVES-LEAIRHRIAQIVQSLTHFLAILHQ 36 (200)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567886 999999999999999999999873
No 77
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=20.22 E-value=3.2e+02 Score=21.52 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=46.0
Q ss_pred HHHHHH---HHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccC
Q psy16169 27 LLKSDV---ALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEKVT 99 (139)
Q Consensus 27 ~lkaei---a~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e~w 99 (139)
.++.++ ..+|+|+-++=|++......+.+.=+..-+..++ ..--+++|+++++.+...+++|-...-
T Consensus 26 ~~~~~Ld~~~d~REriik~sRdIt~~sk~~I~~Lhr~~~~~~~------~~~~~~eA~~~l~~i~~~~~~L~~~l~ 95 (249)
T 3axj_A 26 NYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQ------ISAACGLARKQVELCAQKYQKLAELVP 95 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc------chHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444 4578999999999999988887655443221122 334578888888888888888876543
No 78
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.03 E-value=1.9e+02 Score=22.54 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=10.4
Q ss_pred hhhhHHHHHHHhh
Q psy16169 110 LILFQEKEQLLRS 122 (139)
Q Consensus 110 L~Li~EKE~LL~E 122 (139)
++|+|||..=++|
T Consensus 181 ~~lLNeKK~KIR~ 193 (213)
T 1ik9_A 181 ILVLNEKKTKIRS 193 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHH
Confidence 6889999877766
Done!