Query psy16169
Match_columns 139
No_of_seqs 42 out of 44
Neff 3.0
Searched_HMMs 13730
Date Fri Aug 16 22:32:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16169.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16169hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k4ta1 a.2.8.1 (A:641-712) Eu 78.2 6.6 0.00048 25.5 7.6 58 27-96 6-63 (72)
2 d1wa8a1 a.25.3.1 (A:1-99) ESAT 71.3 8.9 0.00065 23.7 8.9 73 20-97 2-74 (99)
3 d1urfa_ a.2.6.1 (A:) Protein k 57.8 9.8 0.00071 24.6 5.1 57 37-96 8-71 (81)
4 d2f23a1 a.2.1.1 (A:3-77) GreA 53.2 21 0.0015 22.5 6.1 24 74-97 43-66 (75)
5 d1ivsa1 a.2.7.3 (A:797-862) Va 40.8 19 0.0014 21.4 4.1 18 76-93 47-64 (66)
6 d1grja1 a.2.1.1 (A:2-79) GreA 38.0 36 0.0026 21.5 5.3 52 36-97 7-67 (78)
7 d1vf7a_ f.46.1.1 (A:) Multidru 37.4 52 0.0038 21.8 9.0 67 22-95 45-111 (237)
8 d1fxkc_ a.2.5.1 (C:) Prefoldin 27.3 40 0.0029 21.6 4.3 25 72-96 5-29 (133)
9 d1lvfa_ a.47.2.1 (A:) Syntaxin 24.9 41 0.003 21.6 3.9 32 21-54 73-104 (106)
10 d1ykhb1 a.252.1.1 (B:2-130) RN 24.5 49 0.0036 22.4 4.5 32 80-122 89-120 (129)
11 d1nkpa_ a.38.1.1 (A:) Myc prot 23.9 59 0.0043 19.8 4.4 12 36-47 51-62 (88)
No 1
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.18 E-value=6.6 Score=25.50 Aligned_cols=58 Identities=17% Similarity=0.322 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 27 LLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 27 ~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
-|+.=|..-+.-|...++|+.+++.+ |+.+| -++...-|+--++.++.|..||.+|+=
T Consensus 6 nLq~KI~~Kk~qi~~a~~e~K~ak~d--~k~~~----------~~k~k~~~ekKkK~leRL~EQL~KLev 63 (72)
T d1k4ta1 6 NLQTKIDAKKEQLADARRDLKSAKAD--AKVMK----------DAKTKKVVESKKKAVQRLEEQLMKLEV 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHTTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcc----------cHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777778888777766 45555 245556688888999999999999974
No 2
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=71.33 E-value=8.9 Score=23.66 Aligned_cols=73 Identities=11% Similarity=0.090 Sum_probs=54.0
Q ss_pred CCccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 20 STKYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 20 stKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e 97 (139)
.-|+||+.|+.-...-+.--..|...|..+.+.+..=..+. .+.+ .....-.|+++++.+..+...|..+-..
T Consensus 2 ~ikvd~~~l~~~A~~~~~~~~~l~~~l~~l~~~v~~l~~~W-~G~A----~~af~~~~~~w~~~~~~l~~~L~~i~~~ 74 (99)
T d1wa8a1 2 EMKTDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQW-RGAA----GTAAQAAVVRFQEAANKQKQELDEISTN 74 (99)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CSSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999988888888888888888888887655442 1211 3345667888888888888877776543
No 3
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.83 E-value=9.8 Score=24.60 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=38.9
Q ss_pred HhHHHHHHHHHHHHHhHhHhccC------cCCCC-CcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 37 DRVSRLKRELEQIRTEMNYTQRG------LVPMG-TRLAEMARMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 37 ~Rv~rLKrEl~q~~~El~yke~G------~~~~~-~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
.|+..|+.+| +.|++||+.. |..++ .+==........+.|...+|.-|+.+|.++-.
T Consensus 8 ~rl~~L~~~L---~iE~kvkeGaEnm~k~~~~~~~~DrK~l~eaq~~l~eS~~Ki~lLr~~L~~~~q 71 (81)
T d1urfa_ 8 SRVAGLEKQL---AIELKVKQGAENMIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRRALQ 71 (81)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888765 7899999876 21111 11112245567889999999999988876543
No 4
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=53.18 E-value=21 Score=22.48 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=20.5
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 74 RLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 74 ~lqYeEArkrv~~iq~qLa~le~e 97 (139)
|-.|+.||.+...++..+..|+..
T Consensus 43 NaeY~aAke~q~~~e~rI~eLe~~ 66 (75)
T d2f23a1 43 DSGLEAAKQEKARIEARIDSLEDI 66 (75)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999988888864
No 5
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=40.76 E-value=19 Score=21.35 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHh
Q psy16169 76 EYDETRKRIQIIQTQLAD 93 (139)
Q Consensus 76 qYeEArkrv~~iq~qLa~ 93 (139)
++++....+..|+.+|+.
T Consensus 47 kl~~~~~~~~~l~~~l~~ 64 (66)
T d1ivsa1 47 RLKENLEQAERIREALSQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344555555555555544
No 6
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=37.96 E-value=36 Score=21.47 Aligned_cols=52 Identities=19% Similarity=0.359 Sum_probs=34.6
Q ss_pred HHhHHHHHHHHHHHHH-hHh--------HhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy16169 36 RDRVSRLKRELEQIRT-EMN--------YTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLEEK 97 (139)
Q Consensus 36 r~Rv~rLKrEl~q~~~-El~--------yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le~e 97 (139)
+.-..+|+.||.+++. +.. -.++|= .+=|-.|+.||.+...+...+..|+..
T Consensus 7 ~eg~~~L~~EL~~L~~~~rpei~~~I~~Ar~~GD----------lsENaeY~aAKe~q~~~e~RI~eLe~~ 67 (78)
T d1grja1 7 LRGAEKLREELDFLKSVRRPEIIAAIAEAREHGD----------LKENAEYHAAREQQGFCEGRIKDIEAK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCC----------GGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcCC----------hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777776554 221 334441 133568999999999999998888864
No 7
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=37.39 E-value=52 Score=21.78 Aligned_cols=67 Identities=9% Similarity=0.135 Sum_probs=45.5
Q ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHhHhccCcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy16169 22 KYDVDLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQIIQTQLADLE 95 (139)
Q Consensus 22 KyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~yke~G~~~~~~~LaEkvRl~lqYeEArkrv~~iq~qLa~le 95 (139)
..|+..+.+.+..++..+..++.++...+.- |++ | ...-.+......+|+.|+..+...+.+|....
T Consensus 45 ~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l--~~~-~----~~~~~~~~~~~~~~~~a~~~l~~a~~~l~~~~ 111 (237)
T d1vf7a_ 45 QIDPATYEADYQSAQANLASTQEQAQRYKLL--VAD-Q----AVSKQQYADANAAYLQSKAAVEQARINLRYTK 111 (237)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHT-T----SSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred EEehHHHHhhhhhhhhhhhhhhhhhhhhhhh--hhc-c----ccccchhhhhhhhcchhHHHHHHHhhhhcccc
Confidence 6789999999999999999888888765532 222 2 11224455666667777777777777666544
No 8
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=27.32 E-value=40 Score=21.63 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=18.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhh
Q psy16169 72 RMRLEYDETRKRIQIIQTQLADLEE 96 (139)
Q Consensus 72 Rl~lqYeEArkrv~~iq~qLa~le~ 96 (139)
.|.-+|+.-+.++..|+.++..|+.
T Consensus 5 eL~~~~~~l~~~l~~l~~~i~~l~~ 29 (133)
T d1fxkc_ 5 EIVAQLNIYQSQVELIQQQMEAVRA 29 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777778888888777765
No 9
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=24.87 E-value=41 Score=21.63 Aligned_cols=32 Identities=9% Similarity=0.399 Sum_probs=25.1
Q ss_pred CccChHHHHHHHHHHHHhHHHHHHHHHHHHHhHh
Q psy16169 21 TKYDVDLLKSDVALARDRVSRLKRELEQIRTEMN 54 (139)
Q Consensus 21 tKyDPd~lkaeia~ar~Rv~rLKrEl~q~~~El~ 54 (139)
+||. +=..||+.+|.=|...+.++.+|+.+|.
T Consensus 73 ~kf~--l~~~ei~~Rr~fi~~~~~~I~~~~~~l~ 104 (106)
T d1lvfa_ 73 RKFN--LDATELSIRKAFITSTRQIVRDMKDQMS 104 (106)
T ss_dssp GGGT--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4553 2367888888889999999999998875
No 10
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.51 E-value=49 Score=22.36 Aligned_cols=32 Identities=25% Similarity=0.627 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCccCCcchhhhhHHHHHHHhh
Q psy16169 80 TRKRIQIIQTQLADLEEKVTPGQAESDKDRLILFQEKEQLLRS 122 (139)
Q Consensus 80 Arkrv~~iq~qLa~le~e~wPG~~e~drDrL~Li~EKE~LL~E 122 (139)
-.++|+.|+.++...+. .+.-.+.|||.||+.
T Consensus 89 Q~~~i~~Le~E~~~~~~-----------el~~~v~e~e~ll~~ 120 (129)
T d1ykhb1 89 QLRKIDMLQKKLVEVED-----------EKIEAIKKKEKLMRH 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 34678888887776654 566788999999987
No 11
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.88 E-value=59 Score=19.79 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=4.8
Q ss_pred HHhHHHHHHHHH
Q psy16169 36 RDRVSRLKRELE 47 (139)
Q Consensus 36 r~Rv~rLKrEl~ 47 (139)
-+-+..|+.++.
T Consensus 51 ~~yI~~L~~~~~ 62 (88)
T d1nkpa_ 51 TAYILSVQAEEQ 62 (88)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
Done!