RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16169
         (139 letters)



>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 310

 Score = 24.1 bits (52), Expect = 7.8
 Identities = 17/89 (19%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 26  DLLKSDVALARDRVSRLKRELEQIRTEMNYTQRGLVPMGTRLAEMARMRLEYDETRKRIQ 85
           ++L S +      V ++++ELE+ + ++                  R   +   + ++  
Sbjct: 159 EILHSTIRKMNKHVLKIQKELEEAKEKL------------ARQHKRRSDDDDRSSDRKDG 206

Query: 86  IIQTQLADLEEKVTPGQAESDKDRLILFQ 114
           +++ Q+  L+EKV   Q+E     L++FQ
Sbjct: 207 VLEEQIERLQEKVESAQSEQKNLFLVIFQ 235


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.360 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 462,844
Number of extensions: 18929
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 14
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)