BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16172
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QMU|A Chain A, Duck Carboxypeptidase D Domain Ii
pdb|1H8L|A Chain A, Duck Carboxypeptidase D Domain Ii In Complex With Gemsa
Length = 380
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 72/103 (69%), Gaps = 7/103 (6%)
Query: 17 QYLALTYAMNHADM--GNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSN 74
Q LAL+Y+ + M G+P ++ P P+ GITNGA+WY V GGMQD+NYL++N
Sbjct: 208 QQLALSYSKENKKMYQGSPCKDLYPTEYFPH-----GITNGAQWYNVPGGMQDWNYLNTN 262
Query: 75 DFELTLELGCVKFPPAELLPNEWERNKNALVEFMWKVSKSLWA 117
FE+T+ELGCVK+P AE LP WE+N+ +L++F+ +V + +W
Sbjct: 263 CFEVTIELGCVKYPKAEELPKYWEQNRRSLLQFIKQVHRGIWG 305
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 62/109 (56%), Gaps = 8/109 (7%)
Query: 19 LALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDFEL 78
LA TY+ NH M + C N + GGITNGA WY ++GGMQDFNY SN FEL
Sbjct: 251 LAHTYSDNHPIMRKGNN--C------NDSFSGGITNGAHWYELSGGMQDFNYAFSNCFEL 302
Query: 79 TLELGCVKFPPAELLPNEWERNKNALVEFMWKVSKSLWATSIGGKRLPL 127
T+EL C K+P A LP EW+RNK +L++ + + + P+
Sbjct: 303 TIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFPI 351
>pdb|2NSM|A Chain A, Crystal Structure Of The Human Carboxypeptidase N
(kininase I) Catalytic Domain
Length = 439
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 48/65 (73%)
Query: 51 GITNGAKWYVVTGGMQDFNYLSSNDFELTLELGCVKFPPAELLPNEWERNKNALVEFMWK 110
GITNGA WY ++ GMQDFNYL +N FE+TLEL C KFPP E L EW NK AL++F+ +
Sbjct: 259 GITNGASWYSLSKGMQDFNYLHTNCFEITLELSCDKFPPEEELQREWLGNKEALIQFLEQ 318
Query: 111 VSKSL 115
V + +
Sbjct: 319 VHQGI 323
>pdb|1UWY|A Chain A, Crystal Structure Of Human Carboxypeptidase M
Length = 426
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 58/95 (61%), Gaps = 6/95 (6%)
Query: 17 QYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDF 76
QYLA TYA + +M D C NF G+TNG WY + GGMQD+NY+ + F
Sbjct: 206 QYLAHTYASRNPNMKKGDE--C--KNKMNFP--NGVTNGYSWYPLQGGMQDYNYIWAQCF 259
Query: 77 ELTLELGCVKFPPAELLPNEWERNKNALVEFMWKV 111
E+TLEL C K+P E LP+ W NK +L+E++ +V
Sbjct: 260 EITLELSCCKYPREEKLPSFWNNNKASLIEYIKQV 294
>pdb|3PRT|A Chain A, Mutant Of The Carboxypeptidase T
Length = 323
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 47 ARQGGIT--NGAKWYVVTGGMQDFNYLSSNDFELTLELGCVK-----FPPAELLPNEWER 99
A+ G T G+ Y+ GGM D+ Y F T E+ +PP E++ E R
Sbjct: 241 AQTNGYTPQQGSDLYIADGGMDDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSR 300
Query: 100 NKNALVEFMWKVSKSLWATSIGGK 123
NK A+ ++ K+ S+ GK
Sbjct: 301 NKEAV---LYVAEKADCPYSVIGK 321
>pdb|3QNV|A Chain A, Carboxypeptidase T
pdb|4DJL|A Chain A, Carboxypeptidase T With N-sulfamoyl-l-phenylalanine
Length = 323
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 47 ARQGGIT--NGAKWYVVTGGMQDFNYLSSNDFELTLELGCVKF-----PPAELLPNEWER 99
A+ G T + Y+ G M D+ Y F T E+ + PP E++ E R
Sbjct: 241 AQTNGYTPQQASDLYITDGDMTDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSR 300
Query: 100 NKNALVEFMWKVSKSLWATSIGGK 123
NK A+ ++ K+ S+ GK
Sbjct: 301 NKEAV---LYVAEKADCPYSVIGK 321
>pdb|1OBR|A Chain A, Carboxypeptidase T
pdb|3V7Z|A Chain A, Carboxypeptidase T With Gemsa
pdb|4DUK|A Chain A, Carboxypeptidase T With L-benzylsuccinic Acid
Length = 326
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 47 ARQGGIT--NGAKWYVVTGGMQDFNYLSSNDFELTLELGCVKF-----PPAELLPNEWER 99
A+ G T + Y+ G M D+ Y F T E+ + PP E++ E R
Sbjct: 241 AQTNGYTPQQASDLYITDGDMTDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSR 300
Query: 100 NKNALVEFMWKVSKSLWATSIGGK 123
NK A+ ++ K+ S+ GK
Sbjct: 301 NKEAV---LYVAEKADCPYSVIGK 321
>pdb|3V38|A Chain A, Carboxypeptidase T Mutant L254n
Length = 326
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 59 YVVTGGMQDFNYLSSNDFELTLELGCVKF-----PPAELLPNEWERNKNALV 105
Y+ G M D+ Y F T E+ + PP E++ E RNK A++
Sbjct: 255 YITDGDMTDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVL 306
>pdb|3S6K|A Chain A, Crystal Structure Of Xcnags
Length = 467
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 54 NGAKWYVVTGGMQDFNYLSSNDFELTLELGCVKFPPAE 91
NGA+ +TGG+ + YL+ + + L E+ V P E
Sbjct: 150 NGARATSITGGVFEAEYLNRDTYGLVGEVKAVNLAPIE 187
>pdb|3U7I|A Chain A, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
pdb|3U7I|B Chain B, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
pdb|3U7I|C Chain C, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
pdb|3U7I|D Chain D, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
Length = 223
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 50 GGITNGAKWYVVTGGMQD-----FNYLSSNDFELTLELGCVKFPPAELLPNEWERNKNA 103
GGI WY FN+L D+++ G P E+L N ++ + A
Sbjct: 151 GGIYTNDDWYTDVEYSHKYLKAXFNFLGIEDYQIVRAQGTAVLDPTEVLQNAYKEVEEA 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,676,033
Number of Sequences: 62578
Number of extensions: 193481
Number of successful extensions: 315
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 12
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)