Query psy16172
Match_columns 134
No_of_seqs 113 out of 315
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 22:37:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03865 M14_CPE_H Peptidase M1 100.0 2.3E-59 4.9E-64 403.2 10.5 125 1-127 205-340 (402)
2 cd03869 M14_CPX_like Peptidase 100.0 5.2E-59 1.1E-63 401.3 10.6 124 1-127 209-343 (405)
3 KOG2649|consensus 100.0 4.4E-58 9.6E-63 400.7 10.4 123 1-127 261-392 (500)
4 cd03864 M14_CPN Peptidase M14 100.0 9.2E-58 2E-62 391.6 10.6 119 1-127 197-330 (392)
5 cd06245 M14_CPD_III The third 100.0 6E-52 1.3E-56 352.2 9.8 124 1-127 175-301 (363)
6 cd03863 M14_CPD_II The second 100.0 2.7E-50 5.8E-55 343.7 10.0 123 1-127 179-312 (375)
7 cd03866 M14_CPM Peptidase M14 100.0 3.1E-44 6.8E-49 306.0 10.8 121 1-127 177-309 (376)
8 cd03867 M14_CPZ Peptidase M14- 100.0 9.9E-40 2.2E-44 279.5 10.8 123 1-127 199-332 (395)
9 cd03868 M14_CPD_I The first ca 100.0 1.1E-37 2.4E-42 264.0 10.6 121 1-127 179-310 (372)
10 cd03858 M14_CP_N-E_like Carbox 100.0 1.2E-29 2.6E-34 214.2 11.1 123 1-127 180-312 (374)
11 cd06226 M14_CPT_like Peptidase 99.4 2.5E-13 5.5E-18 113.2 6.1 85 1-106 203-291 (293)
12 cd03859 M14_CPT Peptidase M14- 99.3 1.4E-12 2.9E-17 107.9 4.1 83 1-104 202-295 (295)
13 PF00246 Peptidase_M14: Zinc c 99.2 3.6E-12 7.8E-17 102.8 2.3 91 2-103 182-279 (279)
14 cd00596 Peptidase_M14_like The 98.9 3.5E-09 7.6E-14 81.1 6.0 85 2-104 109-196 (196)
15 cd06248 M14_CPA_CPB_like Pepti 98.8 5.4E-09 1.2E-13 87.2 5.7 97 1-111 199-304 (304)
16 cd03860 M14_CP_A-B_like The Pe 98.8 1.7E-08 3.6E-13 83.3 6.2 97 1-111 190-294 (294)
17 cd03871 M14_CPB Peptidase M14 98.7 1.2E-08 2.7E-13 85.3 5.4 97 1-111 196-299 (300)
18 cd03870 M14_CPA Peptidase M14 98.5 1.9E-07 4.2E-12 78.2 7.0 97 1-111 195-298 (301)
19 cd06246 M14_CPB2 Peptidase M14 98.5 1.1E-07 2.5E-12 79.4 5.0 97 1-111 196-299 (300)
20 smart00631 Zn_pept Zn_pept. 98.4 2.7E-07 5.9E-12 75.4 4.2 67 2-86 187-262 (277)
21 cd06247 M14_CPO Peptidase M14 97.6 9.7E-05 2.1E-09 62.0 5.7 97 1-111 195-298 (298)
22 cd06229 M14_Endopeptidase_I Pe 96.3 0.0024 5.2E-08 51.9 2.3 44 59-102 209-253 (255)
23 cd06227 Peptidase_M14-like_2 A 91.4 0.31 6.8E-06 40.5 4.4 66 1-83 187-257 (272)
24 cd03872 M14_CPA6 Carboxypeptid 89.1 1 2.3E-05 38.0 5.7 98 1-112 193-297 (300)
25 cd03862 Peptidase_M14-like_7 A 84.0 2.1 4.6E-05 35.6 4.9 65 3-85 167-241 (273)
26 cd06237 M14_Nna1_like_3 A bact 71.6 2 4.4E-05 35.1 1.2 26 59-84 200-225 (244)
27 PRK10602 murein peptide amidas 59.9 5.1 0.00011 32.8 1.4 44 56-102 186-229 (237)
28 cd06905 Peptidase_M14-like_8 A 57.7 6.7 0.00015 34.0 1.8 30 60-90 314-343 (360)
29 KOG2650|consensus 56.5 14 0.00029 33.0 3.5 68 2-83 315-386 (418)
30 KOG0883|consensus 52.3 8.9 0.00019 34.7 1.7 50 70-129 281-345 (518)
31 PF13220 DUF4028: Protein of u 51.5 4.4 9.6E-05 27.0 -0.2 18 88-105 42-59 (65)
32 COG2840 Uncharacterized protei 40.6 29 0.00062 27.8 2.8 44 82-125 88-136 (184)
33 cd06228 Peptidase_M14-like_3 A 38.3 18 0.00039 31.2 1.4 30 56-85 269-305 (332)
34 KOG2961|consensus 36.8 22 0.00047 28.5 1.6 18 114-131 42-66 (190)
35 TIGR03184 DNA_S_dndE DNA sulfu 36.3 30 0.00065 25.2 2.1 74 16-117 26-101 (105)
36 TIGR02998 RraA_entero regulato 34.3 21 0.00045 27.8 1.1 22 110-131 82-113 (161)
37 PF14302 DUF4377: Domain of un 32.5 65 0.0014 21.9 3.2 39 54-92 28-66 (80)
38 PF14275 DUF4362: Domain of un 31.3 53 0.0012 23.7 2.7 30 99-128 13-46 (98)
39 PF05358 DicB: DicB protein; 30.5 51 0.0011 22.1 2.3 45 73-117 12-59 (62)
40 PRK09372 ribonuclease activity 30.3 23 0.0005 27.3 0.7 21 111-131 83-113 (159)
41 TIGR01935 NOT-MenG RraA famliy 29.3 25 0.00055 26.9 0.8 22 111-132 79-110 (150)
42 PF12056 DUF3537: Protein of u 28.5 46 0.00099 29.8 2.3 24 99-122 364-389 (398)
43 cd06904 M14_MpaA_like Peptidas 28.5 34 0.00074 26.2 1.4 28 59-86 137-164 (178)
44 PRK06201 hypothetical protein; 27.9 32 0.00069 27.7 1.2 22 111-132 105-136 (221)
45 PRK12487 ribonuclease activity 26.7 30 0.00065 27.0 0.8 22 111-132 83-114 (163)
46 PRK08245 hypothetical protein; 26.2 39 0.00084 27.5 1.4 21 112-132 114-144 (240)
47 KOG4115|consensus 25.4 44 0.00095 24.4 1.4 18 110-127 13-31 (97)
48 PF05410 Peptidase_C31: Porcin 24.7 37 0.0008 24.7 0.9 30 54-91 68-100 (105)
49 PRK09262 hypothetical protein; 23.7 37 0.00079 27.5 0.8 22 111-132 103-134 (225)
50 PRK12702 mannosyl-3-phosphogly 23.6 30 0.00066 29.7 0.4 44 45-100 177-223 (302)
51 PF10213 MRP-S28: Mitochondria 22.6 66 0.0014 24.0 2.0 25 79-110 62-86 (127)
52 PF03259 Robl_LC7: Roadblock/L 22.6 82 0.0018 20.3 2.2 25 102-127 3-28 (91)
53 TIGR02798 ligK_PcmE 4-carboxy- 22.5 41 0.00089 27.3 0.9 21 111-131 101-131 (222)
54 PF15089 DUF4552: Domain of un 22.2 71 0.0015 28.6 2.3 29 91-119 36-64 (425)
55 PRK13703 conjugal pilus assemb 21.9 1.1E+02 0.0024 25.3 3.4 29 103-131 164-192 (248)
56 COG4343 CRISPR-associated prot 20.8 53 0.0011 28.0 1.2 44 67-110 216-259 (281)
57 PF03250 Tropomodulin: Tropomo 20.4 70 0.0015 24.9 1.7 11 100-110 65-75 (147)
No 1
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=100.00 E-value=2.3e-59 Score=403.19 Aligned_cols=125 Identities=42% Similarity=0.726 Sum_probs=114.6
Q ss_pred CccccCCCCCCCCh---------h-HHHHHHHHHHhCccccCCCCCCCCCC-CCCCccCCCCceeceeeeeecCCccchh
Q psy16172 1 MNIYSFDLGLIGPL---------R-AQYLALTYAMNHADMGNPDREPCPYS-GSPNFARQGGITNGAKWYVVTGGMQDFN 69 (134)
Q Consensus 1 vanYPyD~~~~~~~---------~-F~~LA~~Ya~~h~~M~~~~~~~C~~~-~~~~F~~~~GItNGA~WY~v~GgMQD~n 69 (134)
|||||||.++++.. . ||+||++||.+||+|+++++.+|+.. .++.| ++||||||+||+|.|||||||
T Consensus 205 va~YP~D~~~~~~~~~~s~~pDd~~f~~lA~~Ya~~h~~m~~~~~~~c~~~~~~~~f--~~GitNGa~Wy~~~GgmqD~n 282 (402)
T cd03865 205 VANYPYDETRSGSAHEYSACPDDAIFKSLARAYSSLNPAMSDPNRPPCRKNDDDSSF--VDGTTNGGAWYSVPGGMQDFN 282 (402)
T ss_pred EEECCCCCCCCCCcccccCCCChHHHHHHHHHHHhhCHHhhcCCCCCCCCCCccccC--CCCeecCceecccCCcccchh
Confidence 79999999865432 1 99999999999999999777789753 24678 999999999999999999999
Q ss_pred hhccceeeEEEeecccCCCCCCCcHHHHhhcHHHHHHHHHHhcccceeEEeCCcCcCC
Q psy16172 70 YLSSNDFELTLELGCVKFPPAELLPNEWERNKNALVEFMWKVSKSLWATSIGGKRLPL 127 (134)
Q Consensus 70 Yl~tncfEiTlElsC~K~P~~~~L~~~W~~Nk~aLl~~~eqvH~GIkG~V~d~~~~~~ 127 (134)
|++||||||||||||||||++++|+++|++||+|||+||+|||+||||+|+|.+|.||
T Consensus 283 y~~~nc~eiT~El~c~K~P~~~~L~~~W~~n~~all~~~~q~~~gI~G~V~D~~g~pI 340 (402)
T cd03865 283 YLSSNCFEITVELSCDKFPPEETLKQYWEDNKNSLVNYIEQVHRGVKGFVKDLQGNPI 340 (402)
T ss_pred hhccCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHhccceEEEEECCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999888876
No 2
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=100.00 E-value=5.2e-59 Score=401.32 Aligned_cols=124 Identities=36% Similarity=0.650 Sum_probs=112.5
Q ss_pred CccccCCCCCCCCh----------h-HHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchh
Q psy16172 1 MNIYSFDLGLIGPL----------R-AQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFN 69 (134)
Q Consensus 1 vanYPyD~~~~~~~----------~-F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~n 69 (134)
||+||||.++++.. . ||+||++||.+|++|+++.+.+|+ ++.|.+++||||||+||+|.|||||||
T Consensus 209 v~~YPyd~~~~~~~~~~~~~tpDd~~Fr~LA~~Ya~~h~~M~~~~~~~c~---~~~~~~~~GitNGa~Wy~~~GgmqD~n 285 (405)
T cd03869 209 VVSYPYDMTRTPWATQEATPTPDDAVFRWLATSYASTHLLMTDASRRVCH---TEDFQKEDGIINGASWHTVAGSMNDFS 285 (405)
T ss_pred EEEcCcccccCCccccCCCCCCCHHHHHHHHHHHHHhCHHhhcCCCCCCC---CcccccCCCceeCCeeccCCCcccchh
Confidence 57999998766421 1 999999999999999997777897 333444999999999999999999999
Q ss_pred hhccceeeEEEeecccCCCCCCCcHHHHhhcHHHHHHHHHHhcccceeEEeCCcCcCC
Q psy16172 70 YLSSNDFELTLELGCVKFPPAELLPNEWERNKNALVEFMWKVSKSLWATSIGGKRLPL 127 (134)
Q Consensus 70 Yl~tncfEiTlElsC~K~P~~~~L~~~W~~Nk~aLl~~~eqvH~GIkG~V~d~~~~~~ 127 (134)
|+|+|||||||||||||||++++|+++|++||+|||+||||||+||||+|+|.+|.||
T Consensus 286 Y~~~ncfEiTlElsc~K~P~~~~L~~~W~~N~~all~~~~~vh~GikG~V~d~~g~~i 343 (405)
T cd03869 286 YLHTNCFELSVYLGCDKFPHESELPEEWENNKESLLVFMEQVHRGIKGVVRDKTGKGI 343 (405)
T ss_pred hhccCeEEEEEeccCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCceEEEECCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999888776
No 3
>KOG2649|consensus
Probab=100.00 E-value=4.4e-58 Score=400.70 Aligned_cols=123 Identities=41% Similarity=0.682 Sum_probs=109.9
Q ss_pred CccccCCCCCCCChh---------HHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhh
Q psy16172 1 MNIYSFDLGLIGPLR---------AQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYL 71 (134)
Q Consensus 1 vanYPyD~~~~~~~~---------F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl 71 (134)
|||||||+++++... ||+||++||++|+.|+++....|. ..+.+ .+||||||+||+|+|||||||||
T Consensus 261 vanYPfD~~~~~~~~~s~tpDd~~F~~La~~YA~~h~~M~~~~~~~~~--~~~~~--~~GItNGA~Wy~v~GgMqDfnYL 336 (500)
T KOG2649|consen 261 VANYPFDDTEDKRKYYSASPDDATFRFLARIYAKSHRNMSLGKRCECD--GNNGS--VGGITNGASWYPVYGGMQDWNYL 336 (500)
T ss_pred EEEccccCCcccccccCCCCCcHHHHHHHHHHHhhChhhhcCCCCccc--ccCCC--cCceecCcceeecCCcccchhhh
Confidence 699999998776432 999999999999999985444443 12223 38999999999999999999999
Q ss_pred ccceeeEEEeecccCCCCCCCcHHHHhhcHHHHHHHHHHhcccceeEEeCCcCcCC
Q psy16172 72 SSNDFELTLELGCVKFPPAELLPNEWERNKNALVEFMWKVSKSLWATSIGGKRLPL 127 (134)
Q Consensus 72 ~tncfEiTlElsC~K~P~~~~L~~~W~~Nk~aLl~~~eqvH~GIkG~V~d~~~~~~ 127 (134)
|||||||||||||+|||++++||++|++||+|||+||||||+||||+|+|..|.||
T Consensus 337 hTNCfEiTiElgC~KfP~e~eLp~~WE~Nr~sLl~f~eqvH~GIkG~V~D~~G~~I 392 (500)
T KOG2649|consen 337 HTNCFEITLELSCEKFPKESELPTLWEYNRKSLLNFVEQVHRGIKGLVFDDTGNPI 392 (500)
T ss_pred hcCeEEEEEEeccccCCchhhhHHHHHhhHHHHHHHHHHHHhccceeEEcCCCCcc
Confidence 99999999999999999999999999999999999999999999999999988887
No 4
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=100.00 E-value=9.2e-58 Score=391.56 Aligned_cols=119 Identities=39% Similarity=0.647 Sum_probs=109.8
Q ss_pred CccccCCCCCCCC--------------hh-HHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCc
Q psy16172 1 MNIYSFDLGLIGP--------------LR-AQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGM 65 (134)
Q Consensus 1 vanYPyD~~~~~~--------------~~-F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgM 65 (134)
||+||||.+++.. .. ||+||++||.+|++|++ +.+| ++.| ++||||||+||+|.|||
T Consensus 197 v~~YPyd~~~~~~~~~~~~~~~~~tpDd~~f~~la~~ya~~h~~m~~--~~~c----~~~f--~~gitnGa~wy~~~Ggm 268 (392)
T cd03864 197 VANYPYDKSREPRVRGFRRTAYSPTPDDKLFQKLAKTYSYAHGWMHK--GWNC----GDYF--DEGITNGASWYSLSKGM 268 (392)
T ss_pred eeeCCcccccccccccccccccCCCCChHHHHHHHHHHHHhCCcccC--CCCC----cccC--CCCcccCceeEecCCCc
Confidence 6899999876531 11 99999999999999998 5679 4469 99999999999999999
Q ss_pred cchhhhccceeeEEEeecccCCCCCCCcHHHHhhcHHHHHHHHHHhcccceeEEeCCcCcCC
Q psy16172 66 QDFNYLSSNDFELTLELGCVKFPPAELLPNEWERNKNALVEFMWKVSKSLWATSIGGKRLPL 127 (134)
Q Consensus 66 QD~nYl~tncfEiTlElsC~K~P~~~~L~~~W~~Nk~aLl~~~eqvH~GIkG~V~d~~~~~~ 127 (134)
|||||+|+|||||||||||||||++++|+++|++||+|||+||||||+||||+|+|.+|.||
T Consensus 269 qD~~Y~~~nc~e~t~el~c~k~p~~~~l~~~w~~n~~all~~~~~~~~gI~G~V~D~~g~pi 330 (392)
T cd03864 269 QDFNYLHTNCFEITLELSCDKFPPEEELEREWLGNREALISYIEQVHQGIKGMVTDENNNGI 330 (392)
T ss_pred hhhhhhccCeeEEEEeccccCCCCHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999888776
No 5
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=100.00 E-value=6e-52 Score=352.23 Aligned_cols=124 Identities=28% Similarity=0.491 Sum_probs=112.7
Q ss_pred CccccCCCCCCCChh---HHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhhccceee
Q psy16172 1 MNIYSFDLGLIGPLR---AQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDFE 77 (134)
Q Consensus 1 vanYPyD~~~~~~~~---F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl~tncfE 77 (134)
|++||||.+.....+ |++||++||.+|++|+.+. ..|+...++.| ++||||||.||+|.||||||||+++||||
T Consensus 175 ~~~yPy~~~~~~~pd~~~~~~la~~~a~ah~~m~~~~-~~c~~~~~~~~--~~Gitnga~wy~~~g~mqd~~y~~~~~~e 251 (363)
T cd06245 175 VATYPYDKPVQTVENKETLKHLAKVYANNHPTMHLGQ-PGCPNNSDENI--PGGVMRGAEWNSHLGSMKDFSVDFGHCPE 251 (363)
T ss_pred EEEecCCCCCcCCCCHHHHHHHHHHHHHhChhhhcCC-CCCCCCccccc--CCCccccceeecccCCcchhhhhhcCCce
Confidence 589999987543222 9999999999999999853 45875445678 99999999999999999999999999999
Q ss_pred EEEeecccCCCCCCCcHHHHhhcHHHHHHHHHHhcccceeEEeCCcCcCC
Q psy16172 78 LTLELGCVKFPPAELLPNEWERNKNALVEFMWKVSKSLWATSIGGKRLPL 127 (134)
Q Consensus 78 iTlElsC~K~P~~~~L~~~W~~Nk~aLl~~~eqvH~GIkG~V~d~~~~~~ 127 (134)
|||||||||||++++|+++|++||+|||+||+|||+||+|+|+|.+|.||
T Consensus 252 ~t~e~~~~k~P~~~~l~~~w~~n~~all~~~~~~~~gI~G~V~d~~g~pi 301 (363)
T cd06245 252 ITVYTSCCLFPSASQLPDLWAENKKSLLSMIVEAHKGVHGVVTDKAGKPI 301 (363)
T ss_pred eEEEeccccCCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEcCCCCCc
Confidence 99999999999999999999999999999999999999999999888886
No 6
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=100.00 E-value=2.7e-50 Score=343.73 Aligned_cols=123 Identities=41% Similarity=0.723 Sum_probs=110.0
Q ss_pred CccccCCCCCCC--------Chh-HHHHHHHHHHhCccccCCCCCCCCCC-CCCCccCCCCceeceeeeeecCCccchhh
Q psy16172 1 MNIYSFDLGLIG--------PLR-AQYLALTYAMNHADMGNPDREPCPYS-GSPNFARQGGITNGAKWYVVTGGMQDFNY 70 (134)
Q Consensus 1 vanYPyD~~~~~--------~~~-F~~LA~~Ya~~h~~M~~~~~~~C~~~-~~~~F~~~~GItNGA~WY~v~GgMQD~nY 70 (134)
|++||||.++.+ ... |++||++||.+|++|+. +.+|+.. +.+.| ++||||||.||++.||||||||
T Consensus 179 ~~~yPy~~~~~~~~~~~~~pd~~~~~~la~~~a~a~~~m~~--~~~c~~~~~~~~~--~~Gi~nga~wY~~~GgmqDw~y 254 (375)
T cd03863 179 VVNYPFDDDEQGIAIYSKSPDDAVFQQLALSYSKENKKMYQ--GSPCKDLYPTEYF--PHGITNGAQWYNVPGGMQDWNY 254 (375)
T ss_pred EEEccCcCCCcccccCCCCCCHHHHHHHHHHHHHHHHHHhc--CCCCccccccccC--CCCccCCceEEecCCChhhhhh
Confidence 579999976322 222 99999999999999998 5579732 34568 9999999999999999999999
Q ss_pred hccceeeEEEeecccCCCCCCCcHHHHhhcHHHHHHHHHHhcccceeEEeCC-cCcCC
Q psy16172 71 LSSNDFELTLELGCVKFPPAELLPNEWERNKNALVEFMWKVSKSLWATSIGG-KRLPL 127 (134)
Q Consensus 71 l~tncfEiTlElsC~K~P~~~~L~~~W~~Nk~aLl~~~eqvH~GIkG~V~d~-~~~~~ 127 (134)
+++|||||||||||||||++++|+++|++||+|||+||+|||+||||+|+|. +|.||
T Consensus 255 ~~~~~~e~T~El~~~k~p~~~~l~~~w~~n~~all~~~~~~~~gI~G~V~D~~~g~pl 312 (375)
T cd03863 255 LNTNCFEVTIELGCVKYPKEEELPKYWEQNRRSLLQFMKQVHRGVRGFVLDATDGRGI 312 (375)
T ss_pred hhcCeEEEEEecCcccCCCHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999996 57775
No 7
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=100.00 E-value=3.1e-44 Score=305.98 Aligned_cols=121 Identities=41% Similarity=0.724 Sum_probs=109.7
Q ss_pred CccccCCCCCCC-----------Chh-HHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccch
Q psy16172 1 MNIYSFDLGLIG-----------PLR-AQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDF 68 (134)
Q Consensus 1 vanYPyD~~~~~-----------~~~-F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~ 68 (134)
|++||||.+... ... |++||++||.+|+.|+. +..|+. ...| ..||||||.||+++||||||
T Consensus 177 ~~~YP~~~~~~~~~~~~~~~~~pd~~~~~~la~~~a~~~~~~~~--g~~~~~--~~~~--~~Gi~nga~~Y~~sG~~~Dw 250 (376)
T cd03866 177 VASYPYDNGNGGTGQQGYRSVSPDDDVFVHLAKTYSYNHANMYK--GNHCSD--KQSF--PSGITNGYQWYPLQGGMQDY 250 (376)
T ss_pred EEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCHHhhC--CCCCCc--cccC--CCCcccceEEEEcCCCchhh
Confidence 579999986322 111 99999999999999998 457863 4678 99999999999999999999
Q ss_pred hhhccceeeEEEeecccCCCCCCCcHHHHhhcHHHHHHHHHHhcccceeEEeCCcCcCC
Q psy16172 69 NYLSSNDFELTLELGCVKFPPAELLPNEWERNKNALVEFMWKVSKSLWATSIGGKRLPL 127 (134)
Q Consensus 69 nYl~tncfEiTlElsC~K~P~~~~L~~~W~~Nk~aLl~~~eqvH~GIkG~V~d~~~~~~ 127 (134)
+|++++|||+||||+|||||++++|+.+|++||+|||+||+|+|.||+|+|+|.+|.||
T Consensus 251 ~y~~~~~~~~T~El~~~k~p~~~~l~~~w~~n~~~ll~~i~q~~~gI~G~V~D~~g~pi 309 (376)
T cd03866 251 NYVWAQCFEITLELSCCKYPPEEQLPAFWEDNKAALIEYIKQVHLGVKGQVFDSNGNPI 309 (376)
T ss_pred hhhhCceEEEEEEecCCCCCCHHHHHHHHHHhHHHHHHHHHHhcCceEEEEECCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999988876
No 8
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=100.00 E-value=9.9e-40 Score=279.49 Aligned_cols=123 Identities=40% Similarity=0.656 Sum_probs=109.8
Q ss_pred CccccCCCCCCCC-----------hhHHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchh
Q psy16172 1 MNIYSFDLGLIGP-----------LRAQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFN 69 (134)
Q Consensus 1 vanYPyD~~~~~~-----------~~F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~n 69 (134)
|++||||.+.+.. ..|++||++||.+|+.|+.+....|.. ...| .+||+|||.||+++||||||+
T Consensus 199 ~~~yP~~~t~~~~~~~~~~~~~d~~~~~~lA~~~a~a~~~~~~~~~~~~~~--~~~~--~g~i~~ga~~Y~~sG~~~Dw~ 274 (395)
T cd03867 199 VVSYPYDFSRHPLEEKMFSPTPDEKVFKMLARTYADAHPTMSDRSTRRCGG--NFHK--RGGIINGAEWYSFSGGMSDFN 274 (395)
T ss_pred eEEcccccccCcccccccCCCCcHHHHHHHHHHHHHhCccccCCCCCCCcc--cccc--CCCceecceeeEcCCCcchhh
Confidence 5799999875421 129999999999999999865556852 2345 999999999999999999999
Q ss_pred hhccceeeEEEeecccCCCCCCCcHHHHhhcHHHHHHHHHHhcccceeEEeCCcCcCC
Q psy16172 70 YLSSNDFELTLELGCVKFPPAELLPNEWERNKNALVEFMWKVSKSLWATSIGGKRLPL 127 (134)
Q Consensus 70 Yl~tncfEiTlElsC~K~P~~~~L~~~W~~Nk~aLl~~~eqvH~GIkG~V~d~~~~~~ 127 (134)
|++++|||+||||+|+|||++++|+.+|++||+||+.||++||+||+|+|+|.+|.||
T Consensus 275 y~~~~~~~~T~EL~~~~~pp~~~i~~~~~e~~~~l~~~~~~~~~~i~G~V~D~~g~pi 332 (395)
T cd03867 275 YLHTNCFEVTVELGCDKFPPEEELYTIWQENKEALLSFMEMVHRGIKGFVKDKDGNPI 332 (395)
T ss_pred hhccCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhccceeEEEEEcCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999888776
No 9
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=100.00 E-value=1.1e-37 Score=263.97 Aligned_cols=121 Identities=43% Similarity=0.755 Sum_probs=108.5
Q ss_pred CccccCCCCCCC----------Ch-hHHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchh
Q psy16172 1 MNIYSFDLGLIG----------PL-RAQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFN 69 (134)
Q Consensus 1 vanYPyD~~~~~----------~~-~F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~n 69 (134)
+++||||.+... .. .|++||++||.+|+.|+.+ ...|. +..| ..||+|||.||++.||||||+
T Consensus 179 ~~~yP~~~~~~~~~~~~~~~~pd~~~~~~la~~~a~~~~~~~~~-~~~~~---~~~~--~~G~~~~~~~Y~~~G~~~Dw~ 252 (372)
T cd03868 179 VASYPYDDSSSHNECGVYSKSPDDAVFKYLALTYANNHPTMRTG-KPCCE---GETF--KDGITNGAHWYDVPGGMQDYN 252 (372)
T ss_pred EEeccccccCCCCCCcccCCCCCHHHHHHHHHHHHhhCHHhhCC-CCCCc---cccC--CCCcccCceeeeCCCCcchhh
Confidence 578999976442 11 2999999999999999883 23454 6679 999999999999999999999
Q ss_pred hhccceeeEEEeecccCCCCCCCcHHHHhhcHHHHHHHHHHhcccceeEEeCCcCcCC
Q psy16172 70 YLSSNDFELTLELGCVKFPPAELLPNEWERNKNALVEFMWKVSKSLWATSIGGKRLPL 127 (134)
Q Consensus 70 Yl~tncfEiTlElsC~K~P~~~~L~~~W~~Nk~aLl~~~eqvH~GIkG~V~d~~~~~~ 127 (134)
|.+++||++||||+|+|||++++|+.+|++||+|||.||+|||.||+|.|+|.+|.|+
T Consensus 253 y~~~~~~~~T~El~~~~~p~~~~l~~~w~~n~~al~~~~~~~~~~i~G~V~d~~g~pv 310 (372)
T cd03868 253 YLHSNCFEITLELSCCKYPPASELPEEWNNNRESLLAYLEQVHIGVKGFVRDASGNPI 310 (372)
T ss_pred hhccCeeEEEEEecCCCCCCHHHHHHHHHHhHHHHHHHHHHhCCceEEEEEcCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999887775
No 10
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=99.96 E-value=1.2e-29 Score=214.24 Aligned_cols=123 Identities=45% Similarity=0.781 Sum_probs=107.9
Q ss_pred CccccCCCCCCC---------Ch-hHHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhh
Q psy16172 1 MNIYSFDLGLIG---------PL-RAQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNY 70 (134)
Q Consensus 1 vanYPyD~~~~~---------~~-~F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nY 70 (134)
++.||||.+... .. .|+.||+.||.+|+.|+... .|+....+.| ..||+||+.||++.|||+||.|
T Consensus 180 ~~~yp~~~~~~~~~~~~~~~~d~~~~~~la~~~a~~~~~~~~~~--~~~~~~~~~y--~~G~~~~~~~Y~~~G~~~Dw~y 255 (374)
T cd03858 180 VANYPYDDSPSGKRTAYSATPDDELFRYLAKTYADAHPTMHKGG--PCCCNDDEEF--PGGITNGAAWYSVTGGMQDWNY 255 (374)
T ss_pred EEEcccccCCCccccCCCCCCCHHHHHHHHHHHHHhCHHhcCCC--CCCCcccccC--CCCcEEcceeeEcCCCchhhhh
Confidence 468999987431 11 29999999999999999853 3332335568 9999999999999999999999
Q ss_pred hccceeeEEEeecccCCCCCCCcHHHHhhcHHHHHHHHHHhcccceeEEeCCcCcCC
Q psy16172 71 LSSNDFELTLELGCVKFPPAELLPNEWERNKNALVEFMWKVSKSLWATSIGGKRLPL 127 (134)
Q Consensus 71 l~tncfEiTlElsC~K~P~~~~L~~~W~~Nk~aLl~~~eqvH~GIkG~V~d~~~~~~ 127 (134)
....|+++|+||+|+|+|++++|+.+|++|+++|+.+++++|.+|+|.|+|.+|.|+
T Consensus 256 ~~~~~~~~t~El~~~~~p~~~~i~~i~~en~~all~l~~~a~~~i~G~V~d~~g~pl 312 (374)
T cd03858 256 LHTNCFEITLELSCCKFPPASELPKYWEENREALLAYIEQVHRGIKGFVRDANGNPI 312 (374)
T ss_pred hccCceEEEEeccCCCCCChhHhHHHHHHHHHHHHHHHhhcCCceEEEEECCCCCcc
Confidence 999999999999999999999999999999999999999999999999999877665
No 11
>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.
Probab=99.42 E-value=2.5e-13 Score=113.19 Aligned_cols=85 Identities=16% Similarity=0.238 Sum_probs=68.5
Q ss_pred CccccCCCCCCCC---hhHHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhhccceee
Q psy16172 1 MNIYSFDLGLIGP---LRAQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDFE 77 (134)
Q Consensus 1 vanYPyD~~~~~~---~~F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl~tncfE 77 (134)
++.|||+.+.... ..|+.||..++..+ .+ .. ++++.||++.|+++||.|...+++.
T Consensus 203 ~i~~P~g~~~~~~p~~~~~~~la~~~~~~~-----------------gy--~~--~~~~~~Y~~~G~~~Dw~y~~~gi~s 261 (293)
T cd06226 203 LVLYPWGWTTQPAPNDTQLRALGRKFASFN-----------------GY--TP--QQSVGLYPTDGTTDDWSYGELGVAA 261 (293)
T ss_pred eEeecCcCCCCCCCCHHHHHHHHHHHhhcC-----------------Cc--cc--cccceEEecCCChhHhHhhcCCceE
Confidence 4679998663322 22999999887411 12 11 5688999999999999999999999
Q ss_pred EEEeecccCCCCCCCc-HHHHhhcHHHHHH
Q psy16172 78 LTLELGCVKFPPAELL-PNEWERNKNALVE 106 (134)
Q Consensus 78 iTlElsC~K~P~~~~L-~~~W~~Nk~aLl~ 106 (134)
+||||+|++||+.+++ +++|++||+|||-
T Consensus 262 ~TiElg~~~~~~~~~~~~~~~~~n~~~~~~ 291 (293)
T cd06226 262 YTFEIGTSFFQSCSSFESGILPDNRPALYY 291 (293)
T ss_pred EEEEccCCCCCCcccccccccccCHHHHhh
Confidence 9999999999999866 8999999999984
No 12
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=99.31 E-value=1.4e-12 Score=107.87 Aligned_cols=83 Identities=24% Similarity=0.363 Sum_probs=67.9
Q ss_pred CccccCCCCCCC-----C-hhHHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhhccc
Q psy16172 1 MNIYSFDLGLIG-----P-LRAQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSN 74 (134)
Q Consensus 1 vanYPyD~~~~~-----~-~~F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl~tn 74 (134)
++.|||+.+... . ..|+.||..+|.++ . | .-|+ .+.||++.|+|+||.|.+.+
T Consensus 202 ~i~~P~~~~~~~~~~~~d~~~~~~la~~~~~~~----~-------------y--~~~~--~~~~Y~~~G~~~Dw~y~~~~ 260 (295)
T cd03859 202 LWLYPYGYQYNEPMPSKDEIDFVALGGTMAESN----G-------------Y--TPKV--SSDLYTANGDADDWMYGRHK 260 (295)
T ss_pred eEEeCCcCCCCCCCCCccHHHHHHHHHHHHHHh----C-------------C--cccC--cceeEecCCchHHHHhhCCC
Confidence 467999875443 1 12999999999885 1 2 2233 36799999999999999999
Q ss_pred eeeEEEeecccC-----CCCCCCcHHHHhhcHHHH
Q psy16172 75 DFELTLELGCVK-----FPPAELLPNEWERNKNAL 104 (134)
Q Consensus 75 cfEiTlElsC~K-----~P~~~~L~~~W~~Nk~aL 104 (134)
|+.+|+||++.+ +|++++++..|++|+.+|
T Consensus 261 ~~~~t~El~~~~~~~gf~~p~~~i~~~~~~~~~~~ 295 (295)
T cd03859 261 IISLTPEMGPESGGTGFYPPDEEISRETSRNYPAL 295 (295)
T ss_pred cEEEEEEeCCCCCCCCCcCCHHHHHHHHHhccCCC
Confidence 999999999965 899999999999999875
No 13
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=99.23 E-value=3.6e-12 Score=102.79 Aligned_cols=91 Identities=33% Similarity=0.628 Sum_probs=76.0
Q ss_pred ccccCCCCC-CC--Ch-hHHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhhccce-e
Q psy16172 2 NIYSFDLGL-IG--PL-RAQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSND-F 76 (134)
Q Consensus 2 anYPyD~~~-~~--~~-~F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl~tnc-f 76 (134)
.+|||+.+. .. .. .++.||..++.+.+.|..+. .| ..-|+++++.||+..|++.||.|...++ +
T Consensus 182 ~~~p~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~----------~y-~~~~~~~~~~~~~~~G~~~D~~~~~~g~~~ 250 (279)
T PF00246_consen 182 ILYPYGYSYDEPPPDADELRSLARAFAEALGSMSRGQ----------NY-DSYGITNGDNWYPASGSSDDYAYYHHGIPF 250 (279)
T ss_dssp EEESESSSSTSSTTTHHHHHHHHHHHHHHHHCHTTTT----------TB-SEEEEEHHHHTTTTSSSHHHHHHHHTTSSE
T ss_pred eeeecccccccCCchhhhhhHHHHHHHHHhhhccccc----------cc-cccCCcccccccccccccceeehhhcCCcE
Confidence 359999755 22 22 29999999999999987721 13 3779999999999999999999999999 9
Q ss_pred eEEEeecccC--CCCCCCcHHHHhhcHHH
Q psy16172 77 ELTLELGCVK--FPPAELLPNEWERNKNA 103 (134)
Q Consensus 77 EiTlElsC~K--~P~~~~L~~~W~~Nk~a 103 (134)
.+|+||+|++ +|+++++...|++|.+|
T Consensus 251 ~~t~E~~~~~~f~p~~~~i~~~~~~~~~~ 279 (279)
T PF00246_consen 251 SFTLELGCCGNFYPPASEIEPIWEENWEA 279 (279)
T ss_dssp EEEEEESSSSSTSS-GGGHHHHHHHHHH-
T ss_pred EEEEEeCCCCCccCCHHHHHHHHHHHhhC
Confidence 9999999999 89999999999999875
No 14
>cd00596 Peptidase_M14_like The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring
Probab=98.88 E-value=3.5e-09 Score=81.10 Aligned_cols=85 Identities=33% Similarity=0.475 Sum_probs=71.6
Q ss_pred ccccCCCCCCC---ChhHHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhhccceeeE
Q psy16172 2 NIYSFDLGLIG---PLRAQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDFEL 78 (134)
Q Consensus 2 anYPyD~~~~~---~~~F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl~tncfEi 78 (134)
+.|||+..... ...++.+|..++..+. . + ..++.+.+.||+..|++.||.|...+|+.+
T Consensus 109 ~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~---~-------------~--~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~ 170 (196)
T cd00596 109 VLYPYSHSDTPPPDAEIPKALAQLLADAAR---G-------------S--KYGVGFGAKWYETGGGFDDWAYGNHGCPSF 170 (196)
T ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHHhcc---C-------------C--CCceeecceEEEcCCchhhhhhhCCCcEEE
Confidence 56899876553 2239999999998887 1 2 345677888899999999999998999999
Q ss_pred EEeecccCCCCCCCcHHHHhhcHHHH
Q psy16172 79 TLELGCVKFPPAELLPNEWERNKNAL 104 (134)
Q Consensus 79 TlElsC~K~P~~~~L~~~W~~Nk~aL 104 (134)
|+|+++++.|+.+.+...|+.|+.+|
T Consensus 171 tiE~g~~~~~~~~~~~~~~~~~~~~~ 196 (196)
T cd00596 171 TIELGGQGYPPEEELPSRGEENKEAL 196 (196)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999864
No 15
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=98.83 E-value=5.4e-09 Score=87.22 Aligned_cols=97 Identities=18% Similarity=0.207 Sum_probs=75.2
Q ss_pred CccccCCCCCCC---C-hhHHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhhccc-e
Q psy16172 1 MNIYSFDLGLIG---P-LRAQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSN-D 75 (134)
Q Consensus 1 vanYPyD~~~~~---~-~~F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl~tn-c 75 (134)
++.|||+.+... . ..|+.||..+|.+....+. ..| .-|.. .+.||+..|+|.||.|...+ |
T Consensus 199 ~i~~P~~~~~~~~~~d~~~~~~la~~~a~ai~~~~g-----------~~y--~~g~~-~~~~y~~~G~~~D~~y~~~gi~ 264 (304)
T cd06248 199 LILYPYGYSCDAVPPNLENLEELAAGLAKAIRAVSG-----------TTY--TVGPA-CNTLYQTTGSSVDWVYHVAGAA 264 (304)
T ss_pred eEEecCcCCCCCCCCCHHHHHHHHHHHHHHHHHhcC-----------CCC--ccccc-ccccccCCCCcchhhhccCCCc
Confidence 467999986532 1 2399999999998765332 235 44432 27899999999999999999 9
Q ss_pred eeEEEeeccc---CC-CCCCCcHHHHhhcHHHHHHHHHHh
Q psy16172 76 FELTLELGCV---KF-PPAELLPNEWERNKNALVEFMWKV 111 (134)
Q Consensus 76 fEiTlElsC~---K~-P~~~~L~~~W~~Nk~aLl~~~eqv 111 (134)
+.+||||.+. -| +|++++...-++.-.++..++++|
T Consensus 265 ~~~t~El~~~~~~gf~~p~~~i~p~~~e~~~~~~~~~~~~ 304 (304)
T cd06248 265 WSYQLELRDTGTYGFVLPAKQIIPTGEETWAGIKYLLKFI 304 (304)
T ss_pred EEEEEEeCCCCCCCCCCCHHHCcchhHHHHHHHHHHHhhC
Confidence 9999999763 34 788899999999999998888653
No 16
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=98.75 E-value=1.7e-08 Score=83.33 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=74.4
Q ss_pred CccccCCCCCCCC---hhHHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhhccc-ee
Q psy16172 1 MNIYSFDLGLIGP---LRAQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSN-DF 76 (134)
Q Consensus 1 vanYPyD~~~~~~---~~F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl~tn-cf 76 (134)
++.|||+.+.... ..|+.||..++.+....+. ..| .-|.. ...||+..|+|.||.|...+ ++
T Consensus 190 ~i~~P~~~~~~~~~d~~~~~~la~~~~~~~~~~~g-----------~~Y--~~g~~-~~~~y~~~G~~~Dw~y~~~~~~~ 255 (294)
T cd03860 190 LILYPWGYTSELPPNYEDLREVAKAAADAIRAVYG-----------TRY--TVGSS-AETLYPASGGSDDWAYGVAGIPY 255 (294)
T ss_pred eEEcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcC-----------CCC--ccccc-cCccccCCCchhhhhhccCCCcE
Confidence 3579998653322 2299999999988654422 123 34443 35799999999999999885 59
Q ss_pred eEEEeecccC----CCCCCCcHHHHhhcHHHHHHHHHHh
Q psy16172 77 ELTLELGCVK----FPPAELLPNEWERNKNALVEFMWKV 111 (134)
Q Consensus 77 EiTlElsC~K----~P~~~~L~~~W~~Nk~aLl~~~eqv 111 (134)
.+||||+|+. +||++++....++.-..|+.|.+++
T Consensus 256 ~~t~El~~~~~~gf~~p~~~i~~~~~e~~~~~~~~~~~~ 294 (294)
T cd03860 256 SYTLELRDTGRYGFLLPASQIIPTAEETFAGIKAMADEA 294 (294)
T ss_pred EEEEEecCCCCCCCcCChHHchhHHHHHHHHHHHHHhhC
Confidence 9999999963 6999999999999999999988753
No 17
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=98.75 E-value=1.2e-08 Score=85.34 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=74.4
Q ss_pred CccccCCCCCCCC---hhHHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhhccceee
Q psy16172 1 MNIYSFDLGLIGP---LRAQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDFE 77 (134)
Q Consensus 1 vanYPyD~~~~~~---~~F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl~tncfE 77 (134)
++.|||+.+.+.. ..|+.||.+.+.+...++. ..|. -| +.++.||+..|+++||.|....|+.
T Consensus 196 ~i~~Py~~~~~~~~~~~~~~~la~~~~~ai~~~~g---~~y~----------~g-~~~~~~Y~a~G~s~Dw~y~~~~~~s 261 (300)
T cd03871 196 MLLYPYSYTYKLPENHAELNSVAKGAVKELASLYG---TKYT----------YG-PGATTIYPAAGGSDDWAYDQGIKYS 261 (300)
T ss_pred EEEecCcCCCCCCCCHHHHHHHHHHHHHHHHHhhC---CCCc----------CC-ccccccccCCCCHHHHHhcCCCcEE
Confidence 4689998754322 2299999998877765533 2342 12 1268999999999999999999999
Q ss_pred EEEeeccc---CC-CCCCCcHHHHhhcHHHHHHHHHHh
Q psy16172 78 LTLELGCV---KF-PPAELLPNEWERNKNALVEFMWKV 111 (134)
Q Consensus 78 iTlElsC~---K~-P~~~~L~~~W~~Nk~aLl~~~eqv 111 (134)
+||||+|. .| +|++++...+++.-.++..+.+++
T Consensus 262 ~t~El~~~g~~gf~lp~~~I~~~~~E~~~~i~~~~~~~ 299 (300)
T cd03871 262 FTFELRDKGRYGFLLPESQIKPTCEETMLAVKYIANYV 299 (300)
T ss_pred EEEEeCCCCCCCCCCCHHHCccccHHHHHHHHHHHHhh
Confidence 99999884 35 778999999998888888777664
No 18
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=98.55 E-value=1.9e-07 Score=78.15 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=71.4
Q ss_pred CccccCCCCCCCC---hhHHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhhccceee
Q psy16172 1 MNIYSFDLGLIGP---LRAQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDFE 77 (134)
Q Consensus 1 vanYPyD~~~~~~---~~F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl~tncfE 77 (134)
++.|||+.+.... ..++.||+..+.+....+. ..| .-|... +.||+..|++.||.|....++.
T Consensus 195 ~i~yP~~~~~~~~~~~~~~~~la~~~~~ai~~~~g-----------~~y--~~g~~~-~~~y~a~G~s~Dw~y~~~~~~s 260 (301)
T cd03870 195 LLLYPYGYTTQSIPDKTELNQVAKSAVAALKSLYG-----------TSY--KYGSII-TTIYQASGGSIDWSYNQGIKYS 260 (301)
T ss_pred eEEecCcCCCCCCCCHHHHHHHHHHHHHHHHHhcC-----------Ccc--cccccc-ceeecCCCChhhhhhcCCCcEE
Confidence 4679999865543 2399999999888876433 124 334332 5799999999999999999999
Q ss_pred EEEeecccC---C-CCCCCcHHHHhhcHHHHHHHHHHh
Q psy16172 78 LTLELGCVK---F-PPAELLPNEWERNKNALVEFMWKV 111 (134)
Q Consensus 78 iTlElsC~K---~-P~~~~L~~~W~~Nk~aLl~~~eqv 111 (134)
+||||.+.. | +|++++...=++.-.+|..+++++
T Consensus 261 ~t~El~~~g~~gF~lP~~~i~p~~~E~~~~i~~~~~~~ 298 (301)
T cd03870 261 FTFELRDTGRYGFLLPASQIIPTAQETWLGLLTIMEHT 298 (301)
T ss_pred EEEEeCCCCCCCCCCChHHCchhhHHHHHHHHHHHHHH
Confidence 999999976 2 666666655566666777777665
No 19
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=98.53 E-value=1.1e-07 Score=79.44 Aligned_cols=97 Identities=19% Similarity=0.317 Sum_probs=71.2
Q ss_pred CccccCCCCCCCCh---hHHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhhccceee
Q psy16172 1 MNIYSFDLGLIGPL---RAQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDFE 77 (134)
Q Consensus 1 vanYPyD~~~~~~~---~F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl~tncfE 77 (134)
++.|||+.+..... .++.||..++.+-..-+. ..| .-|. -+..||...|+++||.|....++.
T Consensus 196 ~i~~P~~~~~~~~~~~~~~~~la~~~~~ai~~~~~-----------~~y--~~g~-~~~~~Y~a~G~s~Dw~y~~~~~~s 261 (300)
T cd06246 196 MILFPYSYTRSKSKDHEELSLLAKEAVRAIRRTSN-----------NRY--THGS-GAETIYLAPGGSDDWAYDLGIKYS 261 (300)
T ss_pred EEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC-----------CCC--eecC-CCCeeeccCCChhhHhhcCCCCEE
Confidence 46899997654432 299999998875433221 124 2221 123589999999999999999999
Q ss_pred EEEeeccc---CC-CCCCCcHHHHhhcHHHHHHHHHHh
Q psy16172 78 LTLELGCV---KF-PPAELLPNEWERNKNALVEFMWKV 111 (134)
Q Consensus 78 iTlElsC~---K~-P~~~~L~~~W~~Nk~aLl~~~eqv 111 (134)
+|+||.|+ -| +|++++..--++.-.+|..+++++
T Consensus 262 ~t~El~~~g~~gF~lp~~~I~p~~~E~~~~~~~~~~~~ 299 (300)
T cd06246 262 FTFELRDTGTYGFLLPESYIKPTCSEALAAVKKIAWHV 299 (300)
T ss_pred EEEEecCCCCCCCCCCHHHcccccHHHHHHHHHHHHhh
Confidence 99999986 33 888888888888888888777664
No 20
>smart00631 Zn_pept Zn_pept.
Probab=98.40 E-value=2.7e-07 Score=75.38 Aligned_cols=67 Identities=31% Similarity=0.421 Sum_probs=52.0
Q ss_pred ccccCCCCCCCC--------hhHHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhhcc
Q psy16172 2 NIYSFDLGLIGP--------LRAQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSS 73 (134)
Q Consensus 2 anYPyD~~~~~~--------~~F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl~t 73 (134)
+.|||+.+.... ..|+.||.+++..|.. .| +-|+.+++ +|...|+++||.|.+.
T Consensus 187 i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------------~y--~~g~~~~~-~y~~~G~~~D~~~~~~ 248 (277)
T smart00631 187 ILYPYGYTKNDLPPNVDDLDAVAKALAKALASVHGT---------------RY--TYGISNGA-IYPASGGSDDWAYGTL 248 (277)
T ss_pred EEecCcCCCCCCCCCHHHHHHHHHHHHHHHHHhcCC---------------cc--ccccccCc-ccCCCCchhhhhhccC
Confidence 579998764421 1188888888887543 24 55777788 5677999999999988
Q ss_pred c-eeeEEEeecccC
Q psy16172 74 N-DFELTLELGCVK 86 (134)
Q Consensus 74 n-cfEiTlElsC~K 86 (134)
+ |+.+|+||+|++
T Consensus 249 gi~~~~t~El~~~~ 262 (277)
T smart00631 249 GIPFSFTLELRDDG 262 (277)
T ss_pred CCcEEEEEEecCCC
Confidence 8 999999999986
No 21
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=97.65 E-value=9.7e-05 Score=62.02 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=73.3
Q ss_pred CccccCCCCCCCCh---hHHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhhccceee
Q psy16172 1 MNIYSFDLGLIGPL---RAQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDFE 77 (134)
Q Consensus 1 vanYPyD~~~~~~~---~F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl~tncfE 77 (134)
++.|||..+..... .++.||...+.+-...+ +..| .-|.. ...+|+..|++.||.|...-.+.
T Consensus 195 ~i~~P~g~~~~~~~n~~~~~~~a~~~~~ai~~~~-----------~~~y--~~g~~-~~~~y~a~G~s~Dwa~~~~~~~s 260 (298)
T cd06247 195 LILLPYGYTKEPSSNHEEMMLVAQKAAAALKEKH-----------GTEY--RVGSS-ALILYSNSGSSRDWAVDIGIPFS 260 (298)
T ss_pred eEEeCCcCCCCCCCCHHHHHHHHHHHHHHHHHhc-----------CCCC--ccCCc-ccccccCCCChhhhhhccCCCEE
Confidence 35799987655432 28888888776544321 2245 55655 46789999999999999888899
Q ss_pred EEEeeccc---CC-CCCCCcHHHHhhcHHHHHHHHHHh
Q psy16172 78 LTLELGCV---KF-PPAELLPNEWERNKNALVEFMWKV 111 (134)
Q Consensus 78 iTlElsC~---K~-P~~~~L~~~W~~Nk~aLl~~~eqv 111 (134)
.|+||... .| ||++++...-++.-.++..+++++
T Consensus 261 ~t~El~~~g~~gF~lp~~~I~p~~~E~~~~i~~~~~~~ 298 (298)
T cd06247 261 YTFELRDNGTYGFVLPEDQIQPTCEETMTAVMSMVEYV 298 (298)
T ss_pred EEEEeCCCCCCCCCCChHHCcchhHHHHHHHHHHHhhC
Confidence 99999864 45 999999999999999998888753
No 22
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=96.32 E-value=0.0024 Score=51.89 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=40.2
Q ss_pred eeecCCccchhhhccceeeEEEeecccCCC-CCCCcHHHHhhcHH
Q psy16172 59 YVVTGGMQDFNYLSSNDFELTLELGCVKFP-PAELLPNEWERNKN 102 (134)
Q Consensus 59 Y~v~GgMQD~nYl~tncfEiTlElsC~K~P-~~~~L~~~W~~Nk~ 102 (134)
|+..|++.||-|-..++.-+||||+-.+-| +.++.+..|++||.
T Consensus 209 ~~~~G~~~Dw~~~~~gi~s~t~El~~~~~~~~~~~~~~~~~~~~~ 253 (255)
T cd06229 209 KRSYGGYKDWFIQKFRRPGFTIEIGRGTNPLPLSQFKTIYKENKG 253 (255)
T ss_pred cCCCCCHHHHHHhhcCCeEEEEEeCCCCCCCChHHhHHHHHhhcC
Confidence 889999999999998999999999997775 66999999999985
No 23
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=91.44 E-value=0.31 Score=40.47 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=41.4
Q ss_pred CccccCCCCCCCC-hh---HHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhhccce-
Q psy16172 1 MNIYSFDLGLIGP-LR---AQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSND- 75 (134)
Q Consensus 1 vanYPyD~~~~~~-~~---F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl~tnc- 75 (134)
++.|||+.+.... .. ...++..-+..| +. .| .-|..-..-.|+..|++.||.|-..++
T Consensus 187 ~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--------~y--~~G~~~~~~~Y~a~G~s~Dway~~~gip 249 (272)
T cd06227 187 ALFTPYAYKKEQPEPNLAEDMRILLLISNKH-------CP--------RC--QVGSAGKLVGYLAHGTSMDYMYDVLKVP 249 (272)
T ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHHHh-------CC--------CC--ceecCccceeecCCCCHHHHHhhcCCCc
Confidence 3679999875543 22 334444433311 11 23 334333344789999999999976665
Q ss_pred eeEEEeec
Q psy16172 76 FELTLELG 83 (134)
Q Consensus 76 fEiTlEls 83 (134)
+-.||||.
T Consensus 250 ~s~t~EL~ 257 (272)
T cd06227 250 YSFTFEIY 257 (272)
T ss_pred EEEEEEcc
Confidence 89999997
No 24
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=89.13 E-value=1 Score=37.97 Aligned_cols=98 Identities=15% Similarity=0.216 Sum_probs=64.5
Q ss_pred CccccCCCCCCCChh---HHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhhccceee
Q psy16172 1 MNIYSFDLGLIGPLR---AQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDFE 77 (134)
Q Consensus 1 vanYPyD~~~~~~~~---F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl~tncfE 77 (134)
++.|||+.+...... .+.+|...+.+=..-+. ..| .-|-. ....|...|+--||.|-..--+-
T Consensus 193 ~i~~P~g~~~~~~~~~~~~~~~~~~~~~ai~~~~~-----------~~Y--~~g~~-~~~lY~a~G~s~Dw~y~~~i~~s 258 (300)
T cd03872 193 MLLYPYSYKYATIPNFGCVESAAYNAVNALQSAYG-----------VRY--RYGPA-SSTLYVSSGSSMDWAYKNGIPYA 258 (300)
T ss_pred EEEecCCCcCCCCCChHHHHHHHHHHHHHHHHhhC-----------CCC--cccCc-ccceecCCCCHHHHhhcCCCcEE
Confidence 357999876443222 66666655543222111 112 11211 23469999999999996544478
Q ss_pred EEEeeccc---CC-CCCCCcHHHHhhcHHHHHHHHHHhc
Q psy16172 78 LTLELGCV---KF-PPAELLPNEWERNKNALVEFMWKVS 112 (134)
Q Consensus 78 iTlElsC~---K~-P~~~~L~~~W~~Nk~aLl~~~eqvH 112 (134)
.|+||.-. -| +|++++..--++.-.+|..++++|-
T Consensus 259 ~t~EL~~~g~~gF~lp~~~I~p~~~E~~~~i~~~~~~~~ 297 (300)
T cd03872 259 FAFELRDTGYYGFLLPEGLIKPTCTETMLAVKNITMHLL 297 (300)
T ss_pred EEEEeCCCCCCCCcCCHHHCCcccHHHHHHHHHHHHHHH
Confidence 99999754 23 8888999899999999999988763
No 25
>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=84.03 E-value=2.1 Score=35.63 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=40.3
Q ss_pred cccCCCCCCCC---hhHHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhhccce----
Q psy16172 3 IYSFDLGLIGP---LRAQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSND---- 75 (134)
Q Consensus 3 nYPyD~~~~~~---~~F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl~tnc---- 75 (134)
-|||..+.... .....||..+..+++. ..| . +-+.+.-|.+.|+.-||-|-..+-
T Consensus 167 ~~Pyg~~~~~~~~~~~~~~l~~~~~~~~~~--------------~~Y--~--~g~~s~~Y~a~G~~~D~~y~~~~~~~~~ 228 (273)
T cd03862 167 WFPYAYTKEPIPHLAEIYALKELLERTYPN--------------HVY--R--FEPQSRHYLTHGDLWDYLYDQHQKQQPN 228 (273)
T ss_pred EcCCcCCCCCCCCHHHHHHHHHHHHHhCCC--------------Cce--E--ECCcceeEECCCCHHHHHHhhcCccccc
Confidence 37998765332 2266777766554321 112 1 112233599999999999975433
Q ss_pred ---eeEEEeeccc
Q psy16172 76 ---FELTLELGCV 85 (134)
Q Consensus 76 ---fEiTlElsC~ 85 (134)
+-+|||++=-
T Consensus 229 ~~~l~~TlE~Gt~ 241 (273)
T cd03862 229 GRFLPLTLEMGSW 241 (273)
T ss_pred ccceeEEEEeecc
Confidence 5799999963
No 26
>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=71.64 E-value=2 Score=35.08 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=23.5
Q ss_pred eeecCCccchhhhccceeeEEEeecc
Q psy16172 59 YVVTGGMQDFNYLSSNDFELTLELGC 84 (134)
Q Consensus 59 Y~v~GgMQD~nYl~tncfEiTlElsC 84 (134)
|+..||..||-|-..++..+|+||+-
T Consensus 200 ~~~~g~~~Dw~~~~~~~~~~T~E~g~ 225 (244)
T cd06237 200 SPDRGVSKQYFADEHGAHAITYEVGD 225 (244)
T ss_pred ccCCCcHHHHHHHhCCCcEEEEecCC
Confidence 46789999999999999999999975
No 27
>PRK10602 murein peptide amidase A; Provisional
Probab=59.89 E-value=5.1 Score=32.85 Aligned_cols=44 Identities=18% Similarity=0.052 Sum_probs=34.0
Q ss_pred eeeeeecCCccchhhhccceeeEEEeecccCCCCCCCcHHHHhhcHH
Q psy16172 56 AKWYVVTGGMQDFNYLSSNDFELTLELGCVKFPPAELLPNEWERNKN 102 (134)
Q Consensus 56 A~WY~v~GgMQD~nYl~tncfEiTlElsC~K~P~~~~L~~~W~~Nk~ 102 (134)
...|+-.|++-||-+ ..++--||+|+.| .+..++...+|.+=++
T Consensus 186 ~~~y~~~Gs~~~~a~-~~giP~it~El~~--~~~~~~v~~~~~~~~~ 229 (237)
T PRK10602 186 SVGYETPGSFGSWCA-DLNLHCITAELPP--ISADEASEKYLFAMAN 229 (237)
T ss_pred ecCCCCCCcHHHHHH-HcCCcEEEEecCC--cCcHHHHHHHHHHHHH
Confidence 466777899999998 5678889999998 7777777777765433
No 28
>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=57.71 E-value=6.7 Score=34.01 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=25.3
Q ss_pred eecCCccchhhhccceeeEEEeecccCCCCC
Q psy16172 60 VVTGGMQDFNYLSSNDFELTLELGCVKFPPA 90 (134)
Q Consensus 60 ~v~GgMQD~nYl~tncfEiTlElsC~K~P~~ 90 (134)
++.|+..||.|-..+++-.|+||. .+...+
T Consensus 314 ~~~G~~~Dw~y~~~gi~s~t~EL~-~~~~~~ 343 (360)
T cd06905 314 VTYGAFDDWAYDHLGIFAFTVELW-DLPTEA 343 (360)
T ss_pred cccCChhhhhhhcCCeEEEEEEcC-CCCccc
Confidence 889999999999999999999998 344333
No 29
>KOG2650|consensus
Probab=56.54 E-value=14 Score=33.05 Aligned_cols=68 Identities=21% Similarity=0.236 Sum_probs=47.1
Q ss_pred ccccCCCCCCCChh---HHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhh-ccceee
Q psy16172 2 NIYSFDLGLIGPLR---AQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYL-SSNDFE 77 (134)
Q Consensus 2 anYPyD~~~~~~~~---F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl-~tncfE 77 (134)
.-|||..+.....+ +..+|++-+.+=...+ |..| .-| +-+-.=|+.+||--||.|- ..-=+-
T Consensus 315 llyPyg~~~~~~~~~~dl~~va~~a~~ai~~~~---gt~Y----------~~G-~~~~~~y~asG~S~Dway~~~gi~~~ 380 (418)
T KOG2650|consen 315 LLYPYGYTNDLPEDYEDLQEVARAAADALKSVY---GTKY----------TVG-SSADTLYPASGGSDDWAYDVLGIPYA 380 (418)
T ss_pred EEecccccCCCCCCHHHHHHHHHHHHHHHHHHh---CCEE----------Eec-cccceeeccCCchHHHhhhccCCCEE
Confidence 46999876554433 8888888887765542 2233 222 2233459999999999996 667788
Q ss_pred EEEeec
Q psy16172 78 LTLELG 83 (134)
Q Consensus 78 iTlEls 83 (134)
.|+||.
T Consensus 381 ft~ELr 386 (418)
T KOG2650|consen 381 FTFELR 386 (418)
T ss_pred EEEEec
Confidence 999998
No 30
>KOG0883|consensus
Probab=52.29 E-value=8.9 Score=34.66 Aligned_cols=50 Identities=26% Similarity=0.309 Sum_probs=35.6
Q ss_pred hhccceeeEEEeecccCCCCCCCcHHHHhhcHHHHHHHHH-------HhcccceeEEeCC--------cCcCCCC
Q psy16172 70 YLSSNDFELTLELGCVKFPPAELLPNEWERNKNALVEFMW-------KVSKSLWATSIGG--------KRLPLWP 129 (134)
Q Consensus 70 Yl~tncfEiTlElsC~K~P~~~~L~~~W~~Nk~aLl~~~e-------qvH~GIkG~V~d~--------~~~~~~~ 129 (134)
=|+||-=+|.|||.|.+-|.+.+ -.|...+ ..||.|+-|++.| -|..||-
T Consensus 281 rl~Tn~G~lNlELhcd~~P~ace----------NFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWg 345 (518)
T KOG0883|consen 281 RLVTNHGPLNLELHCDYAPRACE----------NFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWG 345 (518)
T ss_pred EEeccCCceeeEeecCcchHHHH----------HHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccC
Confidence 37888889999999999998643 1222222 2688899888754 5677884
No 31
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=51.50 E-value=4.4 Score=27.03 Aligned_cols=18 Identities=17% Similarity=0.676 Sum_probs=15.7
Q ss_pred CCCCCcHHHHhhcHHHHH
Q psy16172 88 PPAELLPNEWERNKNALV 105 (134)
Q Consensus 88 P~~~~L~~~W~~Nk~aLl 105 (134)
|.-.+..+-|.+||+|.+
T Consensus 42 ptfkevekdwkenresf~ 59 (65)
T PF13220_consen 42 PTFKEVEKDWKENRESFM 59 (65)
T ss_pred CcHHHHHHHHHHhhhhhc
Confidence 777889999999999864
No 32
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.64 E-value=29 Score=27.78 Aligned_cols=44 Identities=25% Similarity=0.328 Sum_probs=32.9
Q ss_pred ecccCCCCCCCcH---HHHhhcHHHHHHHHHHhc-ccce-eEEeCCcCc
Q psy16172 82 LGCVKFPPAELLP---NEWERNKNALVEFMWKVS-KSLW-ATSIGGKRL 125 (134)
Q Consensus 82 lsC~K~P~~~~L~---~~W~~Nk~aLl~~~eqvH-~GIk-G~V~d~~~~ 125 (134)
|.=-+||++..|. ---++=|..|.+||.++| +||+ ..|+.|+|.
T Consensus 88 LrrG~~~~e~~LDLHG~tq~eAr~~L~~Fi~~a~~~~~rcv~VihGkG~ 136 (184)
T COG2840 88 LRRGRYPPEARLDLHGLTQEEARQELGAFIARARAEGLRCVLVIHGKGR 136 (184)
T ss_pred HhcCCCCcceeeeccCCCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCc
Confidence 4455677775553 234677999999999999 6888 678999983
No 33
>cd06228 Peptidase_M14-like_3 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=38.34 E-value=18 Score=31.20 Aligned_cols=30 Identities=23% Similarity=0.491 Sum_probs=23.7
Q ss_pred eeeeeecCCccchhhhc-------cceeeEEEeeccc
Q psy16172 56 AKWYVVTGGMQDFNYLS-------SNDFELTLELGCV 85 (134)
Q Consensus 56 A~WY~v~GgMQD~nYl~-------tncfEiTlElsC~ 85 (134)
+.-|+.+|+--||.|-. .--+-.|+||+..
T Consensus 269 ~~lY~~sG~s~D~ay~~~~~~~~~~~~~s~t~El~~~ 305 (332)
T cd06228 269 VGLYPTSGASDDYAFSRHFADAVKRKVFSYTIEFGET 305 (332)
T ss_pred ccccCCCCChhhhhhhccccccccCceEEEEEEeCCC
Confidence 34699999999999953 3458899999753
No 34
>KOG2961|consensus
Probab=36.76 E-value=22 Score=28.52 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=14.4
Q ss_pred cceeEEeCC-------cCcCCCCCC
Q psy16172 114 SLWATSIGG-------KRLPLWPRG 131 (134)
Q Consensus 114 GIkG~V~d~-------~~~~~~~~~ 131 (134)
|||++|+|. .-..|||+-
T Consensus 42 ~ikavVlDKDNcit~P~~~~Iwp~~ 66 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAPYSLAIWPPL 66 (190)
T ss_pred CceEEEEcCCCeeeCCcccccCchh
Confidence 999999987 446788863
No 35
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=36.26 E-value=30 Score=25.18 Aligned_cols=74 Identities=15% Similarity=0.303 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCccccCCCCCCCCCCCCCCccCCCCceeceeeeeecCCccchhhhccceeeEEEeecc-cCCCCCCCcH
Q psy16172 16 AQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDFELTLELGC-VKFPPAELLP 94 (134)
Q Consensus 16 F~~LA~~Ya~~h~~M~~~~~~~C~~~~~~~F~~~~GItNGA~WY~v~GgMQD~nYl~tncfEiTlElsC-~K~P~~~~L~ 94 (134)
--.+|..+|-+++.-... . .... .+|+ --+|+.+.|.++|. |+..|..-| .++|.-
T Consensus 26 lcR~A~~~SL~~~~~~~~--~------~~~~--d~~~--E~~~~T~~Ge~~~i-------~~alLkq~~~~~~~~~---- 82 (105)
T TIGR03184 26 LCRWAFCLSLEEGSTPGV--A------DIKL--DGNV--EIDWYTFAGEYGDI-------YLALLKQRCVADGPEL---- 82 (105)
T ss_pred HHHHHHHHHHhcCCCCCc--c------ccCC--CCCe--EEEeeeecCchHHH-------HHHHHHHHHHccCCCC----
Confidence 446788888888874331 0 1123 4453 23699999999984 333355555 556643
Q ss_pred HHHhhcHHHHHHHHHH-hccccee
Q psy16172 95 NEWERNKNALVEFMWK-VSKSLWA 117 (134)
Q Consensus 95 ~~W~~Nk~aLl~~~eq-vH~GIkG 117 (134)
..+.|..++.. +|+||..
T Consensus 83 -----d~e~l~~~~~lHl~rGi~~ 101 (105)
T TIGR03184 83 -----DDESLAKALNLHVHRGIGY 101 (105)
T ss_pred -----CHHHHHHHHHHHHHHHHHH
Confidence 34556666654 8888764
No 36
>TIGR02998 RraA_entero regulator of ribonuclease activity A. THIS PROTEIN IS _NOT_ MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error .
Probab=34.27 E-value=21 Score=27.80 Aligned_cols=22 Identities=5% Similarity=-0.014 Sum_probs=17.0
Q ss_pred HhcccceeEEeCC----------cCcCCCCCC
Q psy16172 110 KVSKSLWATSIGG----------KRLPLWPRG 131 (134)
Q Consensus 110 qvH~GIkG~V~d~----------~~~~~~~~~ 131 (134)
..++|+.|+|+|| -+.|+|-++
T Consensus 82 a~~~G~aGvVidG~vRD~~~i~~l~~PVfa~g 113 (161)
T TIGR02998 82 AANNGWEGIVVYGAVRQVDALEELDIGIQALA 113 (161)
T ss_pred HHHCCCeEEEEeecccCHHHHhhCCCCcEEee
Confidence 4568999999988 678887554
No 37
>PF14302 DUF4377: Domain of unknown function (DUF4377)
Probab=32.47 E-value=65 Score=21.95 Aligned_cols=39 Identities=23% Similarity=0.541 Sum_probs=33.0
Q ss_pred eceeeeeecCCccchhhhccceeeEEEeecccCCCCCCC
Q psy16172 54 NGAKWYVVTGGMQDFNYLSSNDFELTLELGCVKFPPAEL 92 (134)
Q Consensus 54 NGA~WY~v~GgMQD~nYl~tncfEiTlElsC~K~P~~~~ 92 (134)
+...|..+.|++++|.|--..-..|.|..--.+-|+++.
T Consensus 28 ~~~~W~~fy~~IeGF~yE~Gy~Y~L~Vk~~~~~nppaD~ 66 (80)
T PF14302_consen 28 DNDDWELFYGSIEGFEYEPGYEYVLRVKRTPVANPPADA 66 (80)
T ss_pred CCCCcEECcCcccCcCcCCCcEEEEEEEEEECCCCCCCC
Confidence 345999999999999999988888888888888888754
No 38
>PF14275 DUF4362: Domain of unknown function (DUF4362)
Probab=31.34 E-value=53 Score=23.69 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=23.7
Q ss_pred hcHHHHHHHHHHhcccceeEE----eCCcCcCCC
Q psy16172 99 RNKNALVEFMWKVSKSLWATS----IGGKRLPLW 128 (134)
Q Consensus 99 ~Nk~aLl~~~eqvH~GIkG~V----~d~~~~~~~ 128 (134)
.|.+.|-+|++.|..|..+.| .+-+|-||+
T Consensus 13 ~Nl~kl~~Fi~nv~~~k~d~IrIv~yT~EGdPI~ 46 (98)
T PF14275_consen 13 ENLDKLDQFIENVEQGKPDKIRIVQYTIEGDPIF 46 (98)
T ss_pred EeHHHHHHHHHHHhcCCCCEEEEEEecCCCCCEE
Confidence 489999999999999877644 466777764
No 39
>PF05358 DicB: DicB protein; InterPro: IPR008022 DicB is part of the dic operon, which resides on cryptic prophage Kim. Under normal conditions, expression of dicB is actively repressed. When expression is induced, however, cell division rapidly ceases, and this division block is dependent on MinC with which it interacts [].
Probab=30.53 E-value=51 Score=22.06 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=30.7
Q ss_pred cceeeEEEeecccCCCCCCC---cHHHHhhcHHHHHHHHHHhccccee
Q psy16172 73 SNDFELTLELGCVKFPPAEL---LPNEWERNKNALVEFMWKVSKSLWA 117 (134)
Q Consensus 73 tncfEiTlElsC~K~P~~~~---L~~~W~~Nk~aLl~~~eqvH~GIkG 117 (134)
..||||-|-+|.-.|--..- -..-..-|..++++.+.....+++|
T Consensus 12 EgcFeIGv~~sn~~FtEDAI~~RK~E~~LLN~~~i~S~lA~L~L~~~g 59 (62)
T PF05358_consen 12 EGCFEIGVILSNKTFTEDAIKMRKYEPYLLNDNCILSMLARLKLMIKG 59 (62)
T ss_pred cceEEEeEEecCcchhHHHHHHhhhcHHHhhhhhHHHHHHHHhhhhhc
Confidence 46999999999977743211 1112345788888888777777776
No 40
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=30.25 E-value=23 Score=27.34 Aligned_cols=21 Identities=10% Similarity=0.038 Sum_probs=16.1
Q ss_pred hcccceeEEeCC----------cCcCCCCCC
Q psy16172 111 VSKSLWATSIGG----------KRLPLWPRG 131 (134)
Q Consensus 111 vH~GIkG~V~d~----------~~~~~~~~~ 131 (134)
..+|++|+|+|| .+.|+|=++
T Consensus 83 ~~~G~~G~VidG~vRD~~~i~~~~~Pvfa~g 113 (159)
T PRK09372 83 VDNGWEGIVVYGCVRDVDELAELDIGIQALA 113 (159)
T ss_pred HHcCCeEEEecccccCHHHHhhCCCCeEEee
Confidence 457999999988 577887654
No 41
>TIGR01935 NOT-MenG RraA famliy. This model was initially classified as a "hypothetical equivalog" expressing the tentative hypothesis that all members might have the same function as the E. coli enzyme. Considering the second clade of enterobacterial sequences within this family, that appears to be less tenable. The function of these sequences outside of the narrow RraA equivalog model (TIGR02998) remains obscure. All of these were initially annotated as MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error in the case of the E. coli protein.
Probab=29.34 E-value=25 Score=26.90 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=16.6
Q ss_pred hcccceeEEeCC----------cCcCCCCCCC
Q psy16172 111 VSKSLWATSIGG----------KRLPLWPRGQ 132 (134)
Q Consensus 111 vH~GIkG~V~d~----------~~~~~~~~~~ 132 (134)
..+|++|+|+|| -+.|+|=++.
T Consensus 79 ~~~G~~G~VidG~vRD~~~i~~~~~Pvfa~g~ 110 (150)
T TIGR01935 79 EENGWEGVIVNGCVRDVAELAGMDLGVKALAA 110 (150)
T ss_pred HHCCCEEEEEeecccCHHHHhhCCCCEEEeee
Confidence 347999999988 5788886653
No 42
>PF12056 DUF3537: Protein of unknown function (DUF3537); InterPro: IPR021924 This family of transmembrane proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 427 to 453 amino acids in length.
Probab=28.52 E-value=46 Score=29.78 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=21.1
Q ss_pred hcHHHHHHHHHHhcccce--eEEeCC
Q psy16172 99 RNKNALVEFMWKVSKSLW--ATSIGG 122 (134)
Q Consensus 99 ~Nk~aLl~~~eqvH~GIk--G~V~d~ 122 (134)
.-|.||..|+|.-.-||. |+++|.
T Consensus 364 qKRQALVtYLq~N~aGITvfGf~lDR 389 (398)
T PF12056_consen 364 QKRQALVTYLQNNRAGITVFGFVLDR 389 (398)
T ss_pred HHHHHHHHHHhcCCCCeEEEEEEeeh
Confidence 359999999999999987 999984
No 43
>cd06904 M14_MpaA_like Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A (MpaA) and related proteins. MpaA is a member of the M14 family of metallocarboxypeptidases (MCPs), however it has an exceptional type of activity, it hydrolyzes the gamma-D-glutamyl-meso-diaminopimelic acid (gamma-D-Glu-Dap) bond in murein peptides. MpaA is specific for cleavage of the gamma-D-Glu-Dap bond of free murein tripeptide; it may also cleave murein tetrapeptide. MpaA has a different substrate specificity and cellular role than endopeptidase I, ENP1 (ENP1 does not belong to this group). MpaA works on free murein peptide in the recycling pathway.
Probab=28.52 E-value=34 Score=26.20 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=23.4
Q ss_pred eeecCCccchhhhccceeeEEEeecccC
Q psy16172 59 YVVTGGMQDFNYLSSNDFELTLELGCVK 86 (134)
Q Consensus 59 Y~v~GgMQD~nYl~tncfEiTlElsC~K 86 (134)
|...|++-||-+-..++.-||+|++=..
T Consensus 137 ~~~~G~~~~~a~~~~gip~it~Elg~~~ 164 (178)
T cd06904 137 YPTPGSLGSWAGVERNIPVITIELPYNL 164 (178)
T ss_pred ccCCCcHHHHHhhcCCCeEEEEEcCCcc
Confidence 4457899999988778999999998755
No 44
>PRK06201 hypothetical protein; Validated
Probab=27.87 E-value=32 Score=27.65 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=17.0
Q ss_pred hcccceeEEeCC----------cCcCCCCCCC
Q psy16172 111 VSKSLWATSIGG----------KRLPLWPRGQ 132 (134)
Q Consensus 111 vH~GIkG~V~d~----------~~~~~~~~~~ 132 (134)
..+|+.|+|+|| -+.|+|=++.
T Consensus 105 ~~~G~~G~VidG~vRD~~~i~~~~fPvfa~g~ 136 (221)
T PRK06201 105 ARRGVAGVVIDGAVRDVAALREMGFPVFARGV 136 (221)
T ss_pred HHCCCeEEEEeeccCCHHHHhhCCCCeEEecc
Confidence 347999999988 5888886654
No 45
>PRK12487 ribonuclease activity regulator protein RraA; Reviewed
Probab=26.68 E-value=30 Score=26.97 Aligned_cols=22 Identities=18% Similarity=0.183 Sum_probs=16.5
Q ss_pred hcccceeEEeCC----------cCcCCCCCCC
Q psy16172 111 VSKSLWATSIGG----------KRLPLWPRGQ 132 (134)
Q Consensus 111 vH~GIkG~V~d~----------~~~~~~~~~~ 132 (134)
.++|+.|+|+|| -+.|+|=++.
T Consensus 83 ~~~G~aG~VidG~vRD~~~i~~l~fPVfa~g~ 114 (163)
T PRK12487 83 LDNGWEGIVINGCVRDVGALSTMDLGVKALGA 114 (163)
T ss_pred HHCCCeEEEEeecccCHHHHhhCCCCeEEeec
Confidence 457999999887 6778886653
No 46
>PRK08245 hypothetical protein; Validated
Probab=26.21 E-value=39 Score=27.47 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=16.6
Q ss_pred cccceeEEeCC----------cCcCCCCCCC
Q psy16172 112 SKSLWATSIGG----------KRLPLWPRGQ 132 (134)
Q Consensus 112 H~GIkG~V~d~----------~~~~~~~~~~ 132 (134)
.+|+.|+|+|| -+.|+|=++.
T Consensus 114 ~~G~~G~VidG~vRD~~ei~~~gfPvfarg~ 144 (240)
T PRK08245 114 KRGVAGLVTDGGVRDSPGIAALGLPVWCAGP 144 (240)
T ss_pred HCCCeEEEEeeccCCHHHHhhCCCceEeccc
Confidence 36999999988 5788887664
No 47
>KOG4115|consensus
Probab=25.41 E-value=44 Score=24.36 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=15.0
Q ss_pred HhcccceeE-EeCCcCcCC
Q psy16172 110 KVSKSLWAT-SIGGKRLPL 127 (134)
Q Consensus 110 qvH~GIkG~-V~d~~~~~~ 127 (134)
|.+.||-|+ |+|+.|+||
T Consensus 13 qs~~gV~giiv~d~~Gvpi 31 (97)
T KOG4115|consen 13 QSYKGVTGIIVVDNAGVPI 31 (97)
T ss_pred hccCCceeEEEECCCCcEe
Confidence 678899996 579999987
No 48
>PF05410 Peptidase_C31: Porcine arterivirus-type cysteine proteinase alpha; InterPro: IPR008741 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C31 (clan CA). Type example is porcine respiratory and reproductive syndrome arterivirus-type cysteine proteinase alpha (lactate-dehydrogenase-elevating virus), which is involved in viral polyprotein processing [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 3IFU_A.
Probab=24.66 E-value=37 Score=24.67 Aligned_cols=30 Identities=40% Similarity=0.836 Sum_probs=12.9
Q ss_pred eceeeeeecC---CccchhhhccceeeEEEeecccCCCCCC
Q psy16172 54 NGAKWYVVTG---GMQDFNYLSSNDFELTLELGCVKFPPAE 91 (134)
Q Consensus 54 NGA~WY~v~G---gMQD~nYl~tncfEiTlElsC~K~P~~~ 91 (134)
.|..||+|+| ||. +..|. +.+|-.-||-+.
T Consensus 68 rgcrwypitgpvpg~~----lyans----~hvsd~~fpgat 100 (105)
T PF05410_consen 68 RGCRWYPITGPVPGMG----LYANS----MHVSDQPFPGAT 100 (105)
T ss_dssp TT-EEEE--S---S------EEE-S----S-EESS--TT--
T ss_pred cCCceeeccCCCCCce----eeecc----eeecCCCCCCce
Confidence 4889999998 444 33343 556777777654
No 49
>PRK09262 hypothetical protein; Provisional
Probab=23.73 E-value=37 Score=27.52 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=16.8
Q ss_pred hcccceeEEeCC----------cCcCCCCCCC
Q psy16172 111 VSKSLWATSIGG----------KRLPLWPRGQ 132 (134)
Q Consensus 111 vH~GIkG~V~d~----------~~~~~~~~~~ 132 (134)
..+|+.|+|+|| -+.|+|=+++
T Consensus 103 ~~~G~~GiVidG~vRD~~~i~~l~~Pvfa~g~ 134 (225)
T PRK09262 103 QARGVRGLVIDAGVRDVRTLTEMGFPVWSRAI 134 (225)
T ss_pred HHCCCeEEEEeceeCCHHHHhhCCCceEEeec
Confidence 457999999988 5778876553
No 50
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=23.60 E-value=30 Score=29.68 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=25.8
Q ss_pred CccCCCCceeceeeeeecCCccchhhhccceeeEEEee---cccCCCCCCCcHHHHhhc
Q psy16172 45 NFARQGGITNGAKWYVVTGGMQDFNYLSSNDFELTLEL---GCVKFPPAELLPNEWERN 100 (134)
Q Consensus 45 ~F~~~~GItNGA~WY~v~GgMQD~nYl~tncfEiTlEl---sC~K~P~~~~L~~~W~~N 100 (134)
.|...-|..-|..|| |+|+||- ||-. +|.|=-....|...++.+
T Consensus 177 Rf~H~l~~~~~~~~~-~~~~~~~-----------~~~~~~~~~dKg~A~~~L~~~y~~~ 223 (302)
T PRK12702 177 LRLHQLHFSDLPQWY-LTGWMQP-----------TLAAEPNSLPGEQAVQLLLDCYQRH 223 (302)
T ss_pred ceEEecccccccccc-ccccccc-----------ccccccCCCCHHHHHHHHHHHHHhc
Confidence 353344555678999 9999984 4444 555544444444444443
No 51
>PF10213 MRP-S28: Mitochondrial ribosomal subunit protein ; InterPro: IPR019349 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a conserved region of approx. 125 residues of one of the proteins that makes up the small subunit of the mitochondrial ribosome. In Saccharomyces cerevisiae (Baker's yeast) it is mitochondrial ribosomal protein S24 whereas in humans it is S35.
Probab=22.60 E-value=66 Score=24.02 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=20.2
Q ss_pred EEeecccCCCCCCCcHHHHhhcHHHHHHHHHH
Q psy16172 79 TLELGCVKFPPAELLPNEWERNKNALVEFMWK 110 (134)
Q Consensus 79 TlElsC~K~P~~~~L~~~W~~Nk~aLl~~~eq 110 (134)
+|-|+|.+||... .|+.-|...|..
T Consensus 62 ~l~i~sdr~~~~~-------qN~~~l~~~l~~ 86 (127)
T PF10213_consen 62 ILKISSDRFPTRA-------QNKKYLSDLLTR 86 (127)
T ss_pred EEEEecccCCCHH-------HHHHHHHHHHHH
Confidence 6889999999964 488888777765
No 52
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=22.56 E-value=82 Score=20.34 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcccceeE-EeCCcCcCC
Q psy16172 102 NALVEFMWKVSKSLWAT-SIGGKRLPL 127 (134)
Q Consensus 102 ~aLl~~~eqvH~GIkG~-V~d~~~~~~ 127 (134)
+.+|+.++ ...||+|. |.|..|++|
T Consensus 3 e~~l~~l~-~~~gv~~~~l~~~dG~~i 28 (91)
T PF03259_consen 3 EELLEELQ-SVPGVRGAVLVDKDGLVI 28 (91)
T ss_dssp HHHHHHHH-HSTTEEEEEEEETTSEEE
T ss_pred HHHHHHHh-CCCCeeEEEEEcCCCCEE
Confidence 45666663 56899986 467777765
No 53
>TIGR02798 ligK_PcmE 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase. Members of this protein family 4-carboxy-4-hydroxy-2-oxoadipate aldolase, also called 4-oxalocitramalate aldolase. This enzyme of the protocatechuate 4,5-cleavage pathway converts its substrate to pyruvate plus oxaloacetate. Protocatechuate is an intermediate in many pathways for degrading aromatic compounds, including lignin, fluorene, etc. Hara, et al. showed the LigK gene was not only a 4-carboxy-4-hydroxy-2-oxoadipate aldolase but also the enzyme of the following step, oxaloacetate decarboxylase.
Probab=22.50 E-value=41 Score=27.29 Aligned_cols=21 Identities=14% Similarity=0.472 Sum_probs=16.1
Q ss_pred hcccceeEEeCC----------cCcCCCCCC
Q psy16172 111 VSKSLWATSIGG----------KRLPLWPRG 131 (134)
Q Consensus 111 vH~GIkG~V~d~----------~~~~~~~~~ 131 (134)
..+|+.|+|+|| -+.|+|=++
T Consensus 101 ~~~G~~GiVidG~vRD~~~i~~l~~Pvfa~g 131 (222)
T TIGR02798 101 QARGCRGLIIDAGVRDVRDLTEMNFPVWSKA 131 (222)
T ss_pred HHCCCeEEEEecccCCHHHHhhCCCceEEee
Confidence 347999999988 578877554
No 54
>PF15089 DUF4552: Domain of unknown function (DUF4552)
Probab=22.15 E-value=71 Score=28.64 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=24.5
Q ss_pred CCcHHHHhhcHHHHHHHHHHhcccceeEE
Q psy16172 91 ELLPNEWERNKNALVEFMWKVSKSLWATS 119 (134)
Q Consensus 91 ~~L~~~W~~Nk~aLl~~~eqvH~GIkG~V 119 (134)
..++..|.+||+.+..|||-|.+-+.-++
T Consensus 36 qsvq~iw~en~ke~snfledvnQ~~~s~L 64 (425)
T PF15089_consen 36 QSVQHIWGENGKEVSNFLEDVNQPTPSLL 64 (425)
T ss_pred hhHHHHHhhhhHHHhhHHhhhcccccccc
Confidence 46899999999999999999887766544
No 55
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=21.88 E-value=1.1e+02 Score=25.31 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=24.0
Q ss_pred HHHHHHHHhcccceeEEeCCcCcCCCCCC
Q psy16172 103 ALVEFMWKVSKSLWATSIGGKRLPLWPRG 131 (134)
Q Consensus 103 aLl~~~eqvH~GIkG~V~d~~~~~~~~~~ 131 (134)
.|-.|-++-+..|.++-+||.++|-+|.-
T Consensus 164 il~~fa~~yg~~v~~VS~DG~~~p~fp~~ 192 (248)
T PRK13703 164 VINDFRDTYGLSVIPVSVDGVINPLLPDS 192 (248)
T ss_pred HHHHHHHHhCCeEEEEecCCCCCCCCCCC
Confidence 45667777888999999999999999853
No 56
>COG4343 CRISPR-associated protein, RecB family exonuclease [Defense mechanisms]
Probab=20.80 E-value=53 Score=28.04 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=35.1
Q ss_pred chhhhccceeeEEEeecccCCCCCCCcHHHHhhcHHHHHHHHHH
Q psy16172 67 DFNYLSSNDFELTLELGCVKFPPAELLPNEWERNKNALVEFMWK 110 (134)
Q Consensus 67 D~nYl~tncfEiTlElsC~K~P~~~~L~~~W~~Nk~aLl~~~eq 110 (134)
||-++-+-.|.=++|+.|.-+|-.+.|.+.|.+=|+.++..|++
T Consensus 216 D~G~li~vtvN~~vk~~~~l~~i~d~lRseFLe~RD~~~div~~ 259 (281)
T COG4343 216 DYGVLISVTVNSGVKIKARLVYIDDSLRSEFLEERDRVADIVEY 259 (281)
T ss_pred ceeEEEEEEEcCceeEEEEEEEcChHHHHHHHHHHHHHHHHHHc
Confidence 33334444455578999999999999999999999999998875
No 57
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=20.43 E-value=70 Score=24.92 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=10.2
Q ss_pred cHHHHHHHHHH
Q psy16172 100 NKNALVEFMWK 110 (134)
Q Consensus 100 Nk~aLl~~~eq 110 (134)
||++||.|++.
T Consensus 65 dRe~Ll~~lek 75 (147)
T PF03250_consen 65 DREALLDYLEK 75 (147)
T ss_pred CHHHHHHHHHH
Confidence 99999999986
Done!