RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16172
(134 letters)
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 98.8 bits (246), Expect = 7e-26
Identities = 47/101 (46%), Positives = 66/101 (65%), Gaps = 3/101 (2%)
Query: 17 QYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDF 76
Q LAL+Y+ + M Y P GITNGA+WY V GGMQD+NYL++N F
Sbjct: 208 QQLALSYSKENKKMYQGSPCKDLY---PTEYFPHGITNGAQWYNVPGGMQDWNYLNTNCF 264
Query: 77 ELTLELGCVKFPPAELLPNEWERNKNALVEFMWKVSKSLWA 117
E+T+ELGCVK+P AE LP WE+N+ +L++F+ +V + +W
Sbjct: 265 EVTIELGCVKYPKAEELPKYWEQNRRSLLQFIKQVHRGIWG 305
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 96.5 bits (240), Expect = 1e-24
Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 8/96 (8%)
Query: 16 AQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSND 75
+ LA TY+ NH M + N + GGITNGA WY ++GGMQDFNY SN
Sbjct: 248 FKQLAHTYSDNHPIMR--------KGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNC 299
Query: 76 FELTLELGCVKFPPAELLPNEWERNKNALVEFMWKV 111
FELT+EL C K+P A LP EW+RNK +L++ + +
Sbjct: 300 FELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQA 335
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 95.1 bits (236), Expect = 3e-24
Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 16 AQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSND 75
QYLA TYA + +M D G+TNG WY + GGMQD+NY+ +
Sbjct: 205 FQYLAHTYASRNPNMKKGDECKN------KMNFPNGVTNGYSWYPLQGGMQDYNYIWAQC 258
Query: 76 FELTLELGCVKFPPAELLPNEWERNKNALVEFMWKV 111
FE+TLEL C K+P E LP+ W NK +L+E++ +V
Sbjct: 259 FEITLELSCCKYPREEKLPSFWNNNKASLIEYIKQV 294
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 90.8 bits (225), Expect = 9e-23
Identities = 44/96 (45%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 16 AQYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSND 75
Q LA Y+ H M + GITNGA WY ++ GMQDFNYL +N
Sbjct: 232 FQKLAKVYSYAHGWMFQGWNCGDYF--------PDGITNGASWYSLSKGMQDFNYLHTNC 283
Query: 76 FELTLELGCVKFPPAELLPNEWERNKNALVEFMWKV 111
FE+TLEL C KFPP E L EW NK AL++F+ +V
Sbjct: 284 FEITLELSCDKFPPEEELQREWLGNKEALIQFLEQV 319
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 62.7 bits (153), Expect = 7e-13
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 53 TNGAKWYVVTGGMQDFNYLSSNDFELTLELGCVK-----FPPAELLPNEWERNKNALVEF 107
G+ Y+ GGM D+ Y F T E+ +PP E++ E RNK A++
Sbjct: 249 QQGSDLYIADGGMDDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVLYV 308
Query: 108 MWKVSK 113
K
Sbjct: 309 AEKADC 314
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 44.0 bits (103), Expect = 3e-06
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 15/98 (15%)
Query: 18 YLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDFE 77
L L A+ D F + +T+G + + F S
Sbjct: 193 SLGLRDALGQYFKLAKD----------GFIDECPVTDGVIFNHFDTSFEAFLVRSGAKLA 242
Query: 78 LTLELGCVKFPPAELLPNEWERNKNALVEFMWKVSKSL 115
E P E + N A+ +F+ + L
Sbjct: 243 ACSET-----PGQEDFDRRVQANSAAMGQFIAHCAPIL 275
>2qvp_A Uncharacterized protein; putative metallopeptidase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 2.00A {Shewanella amazonensis}
Length = 275
Score = 42.0 bits (98), Expect = 1e-05
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 6/78 (7%)
Query: 38 CPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDFELTLELGCVKFPPAELLPNEW 97
P + + + +G + + F S E P + L
Sbjct: 203 FPIAADGDVDNCP-VRSGVIFNHFDTSFESFLVRSGARVGCCSET-----PGQQPLDQRI 256
Query: 98 ERNKNALVEFMWKVSKSL 115
N A+ F+ ++ L
Sbjct: 257 LANAAAMNTFVNMLAPEL 274
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 34.4 bits (78), Expect = 0.006
Identities = 12/81 (14%), Positives = 16/81 (19%), Gaps = 16/81 (19%)
Query: 17 QYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDF 76
+ M + G P A G N A G D
Sbjct: 300 EQRFREELMARGEFQIRH-------GYPRSAP--GQANLALACNFVGQTYDC-------L 343
Query: 77 ELTLELGCVKFPPAELLPNEW 97
T+E+ W
Sbjct: 344 AFTIEMPFKDHDDNPEPGTGW 364
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 29.4 bits (65), Expect = 0.31
Identities = 10/59 (16%), Positives = 15/59 (25%)
Query: 43 SPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDFELTLELGCVKFPPAELLPNEWERNK 101
SP+F + G G + LTLE+ W +
Sbjct: 325 SPDFQDEHGYPPGKYREDAFKLASKYIGHRFGCLSLTLEMPFKDNANLPDEHIGWNGAR 383
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 1.6
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 25/77 (32%)
Query: 11 IGPLRAQ----YLALTYAMNHADMGNPDREPCP---YSGSP-----------N----FAR 48
IG +R +L ++ + N + P P S N +
Sbjct: 306 IG-VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 49 QGGIT--NGAKWYVVTG 63
Q I+ NGAK VV+G
Sbjct: 365 QVEISLVNGAKNLVVSG 381
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.447
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,124,139
Number of extensions: 113622
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 10
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)