RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16172
(134 letters)
>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 106 bits (266), Expect = 1e-29
Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 17 QYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDF 76
QYLA TYA + +M D + G+TNG WY + GGMQD+NY+ + F
Sbjct: 206 QYLAHTYASRNPNMKKGDECKNKMNF------PNGVTNGYSWYPLQGGMQDYNYIWAQCF 259
Query: 77 ELTLELGCVKFPPAELLPNEWERNKNALVEFMWKV 111
E+TLEL C K+P E LP+ W NK +L+E++ +V
Sbjct: 260 EITLELSCCKYPREEKLPSFWNNNKASLIEYIKQV 294
>d1h8la2 c.56.5.1 (A:4-304) Carboxypeptidase D, catalytic domain
{Crested duck (Lophonetta specularioides) [TaxId: 8836]}
Length = 301
Score = 96.9 bits (240), Expect = 6e-26
Identities = 46/95 (48%), Positives = 63/95 (66%), Gaps = 3/95 (3%)
Query: 17 QYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDF 76
Q LAL+Y+ + M Y P GITNGA+WY V GGMQD+NYL++N F
Sbjct: 208 QQLALSYSKENKKMYQGSPCKDLY---PTEYFPHGITNGAQWYNVPGGMQDWNYLNTNCF 264
Query: 77 ELTLELGCVKFPPAELLPNEWERNKNALVEFMWKV 111
E+T+ELGCVK+P AE LP WE+N+ +L++F+ +V
Sbjct: 265 EVTIELGCVKYPKAEELPKYWEQNRRSLLQFIKQV 299
>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces
vulgaris [TaxId: 2026]}
Length = 323
Score = 57.6 bits (138), Expect = 2e-11
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 54 NGAKWYVVTGGMQDFNYLSSNDFELTLELGCVK-----FPPAELLPNEWERNKNALVEFM 108
+ Y+ G M D+ Y F T E+ +PP E++ E RNK A++
Sbjct: 250 QASDLYITDGDMTDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVLYVA 309
Query: 109 WKV 111
K
Sbjct: 310 EKA 312
>d1m4la_ c.56.5.1 (A:) Carboxypeptidase A {Cow (Bos taurus) [TaxId:
9913]}
Length = 307
Score = 50.2 bits (119), Expect = 8e-09
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 58 WYVVTGGMQDFNYLSSNDFELTLEL---GCVKF-PPAELLPNEWERNKNALVEFMWKV 111
Y +GG D++Y + T EL G F PA + + ++ M
Sbjct: 247 IYQASGGSIDWSYNQGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTIMEHT 304
>d2bo9a1 c.56.5.1 (A:4-307) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 305
Score = 47.9 bits (113), Expect = 5e-08
Identities = 18/93 (19%), Positives = 26/93 (27%), Gaps = 4/93 (4%)
Query: 25 MNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDFELTLEL-- 82
+ ++ R S + Y +G D+ Y + F T EL
Sbjct: 212 PDAEELDKVARLAAKALASVSGTEYQVGPTCTTVYPASGSSIDWAYDNGIKFAFTFELRD 271
Query: 83 -GCVKF-PPAELLPNEWERNKNALVEFMWKVSK 113
G F PA + E L M V
Sbjct: 272 TGTYGFLLPANQIIPTAEETWLGLKTIMEHVRD 304
>d1ayea1 c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 307
Score = 47.5 bits (112), Expect = 7e-08
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 26 NHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDFELTLEL--- 82
+ ++ ++ S + + + Y +GG D++Y + EL
Sbjct: 213 DFDELSEVAQKAAQSLRSLHGTKYKVGPICSVIYQASGGSIDWSYDYGIKYSFAFELRDT 272
Query: 83 GCVKF-PPAELLPNEWERNKNALVEFMWKVSK 113
G F PA + E L M V
Sbjct: 273 GRYGFLLPARQILPTAEETWLGLKAIMEHVRD 304
>d1z5ra1 c.56.5.1 (A:6-308) Carboxypeptidase B {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 304
Score = 41.3 bits (96), Expect = 9e-06
Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 4/98 (4%)
Query: 22 TYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDFELTLE 81
N+A++ N + + + Y GG D+ Y + T E
Sbjct: 207 KLPENNAELNNLAKAAVKELATLYGTKYTYGPGATTIYPAAGGSDDWAYDQGIKYSFTFE 266
Query: 82 L---GCVKF-PPAELLPNEWERNKNALVEFMWKVSKSL 115
L G F P + E A+ V L
Sbjct: 267 LRDKGRYGFILPESQIQATCEETMLAIKYVTNYVLGHL 304
>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm
(Helicoverpa zea) [TaxId: 7113]}
Length = 312
Score = 31.7 bits (71), Expect = 0.021
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 17/86 (19%)
Query: 17 QYLALTYAMNHADMGNPDREPCPYSGSPNFARQGGITNGAKWYVVTGGMQDFNYLSSNDF 76
+ + A P+ P G + Y + G +D+ +
Sbjct: 217 HTVGVAMASVIQSNALPNFPPYTV----------GNSALVIGYYIAGSSEDYAHSIGVPL 266
Query: 77 ELTLEL-----GCVKF--PPAELLPN 95
T EL G F PP +
Sbjct: 267 SYTYELPGLSSGWDGFHLPPQYIEQV 292
>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 396
Score = 27.2 bits (59), Expect = 0.76
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 44 PNFARQGGITNGAKWYVVTGGMQDFNYLSSNDF 76
+ R+ G A+W GG QD ND+
Sbjct: 23 IDIEREKGAFPKAQWNRPDGGKQDITVWCGNDY 55
>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm
(Helicoverpa armigera) [TaxId: 29058]}
Length = 317
Score = 26.3 bits (57), Expect = 1.2
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 59 YVVTGGMQDFNYLSSNDFELTLELGC 84
Y +GG D+ ++ F T EL
Sbjct: 251 YAASGGASDYAMQAAAPFSYTYELPA 276
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.447
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 526,913
Number of extensions: 22346
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 12
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.8 bits)