BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16174
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 59 LTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGS-GMEPEEICEDLMTR 117
++ALPD+ + + EF+V+ACDGIW+ MT+E+V FV+ RI GM+ +ICE+L
Sbjct: 221 ISALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFVQERINKPGMKLSKICEELFDH 280
Query: 118 CLAPDCQMGGLGCDNMTVVIVCF 140
CLAP + G GCDNMT +IV F
Sbjct: 281 CLAPHTRGDGTGCDNMTAIIVQF 303
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 6/74 (8%)
Query: 67 LRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMG 126
+ + D +F+++ACDGIWDVM NEE+ DFVR R+ + E++C +++ CL +
Sbjct: 224 IERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR-- 281
Query: 127 GLGCDNMTVVIVCF 140
DNM+V+++CF
Sbjct: 282 ----DNMSVILICF 291
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 6/74 (8%)
Query: 67 LRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMG 126
+ + D +F+++ACDGIWDVM NEE+ DFVR R+ + E++C +++ CL +
Sbjct: 224 IERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR-- 281
Query: 127 GLGCDNMTVVIVCF 140
DNM+V+++CF
Sbjct: 282 ----DNMSVILICF 291
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 75 EFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMT 134
EF+++A DGIWDVM+NEE+ ++V+ R+ + E +C ++ CL + DNM+
Sbjct: 238 EFIILAXDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLHKGSR------DNMS 291
Query: 135 VVIVCF 140
+V+VCF
Sbjct: 292 IVLVCF 297
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 57 PKLTALPDVT-LRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRI 101
P + P+VT +R++ D + L++A DG+WDVMTNEEV D R RI
Sbjct: 213 PSVIPDPEVTSVRRVKED-DCLILASDGLWDVMTNEEVCDLARKRI 257
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRI 101
P + P+VT S + E L++A DG+WDVM N+EV + R RI
Sbjct: 246 PYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRI 290
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRI 101
P + P+VT S + E L++A DG+WDVM N+EV + R RI
Sbjct: 239 PYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRI 283
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRI 101
P + P+VT S + E L++A DG+WDVM N+EV + R RI
Sbjct: 236 PYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRI 280
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRI 101
P + P+VT S + E L++A DG+WDVM N+EV + R RI
Sbjct: 233 PYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRI 277
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRI 101
P + P+VT S + E L++A DG+WDVM N+EV + R RI
Sbjct: 237 PYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRI 281
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRI 101
P + P+VT S + E L++A DG+WDVM N+EV + R RI
Sbjct: 222 PYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRI 266
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRI 101
P + P+VT K + + L++A DG+WDVMT+EE + R RI
Sbjct: 219 PSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRI 263
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRI 101
P + P+VT K + + L++A DG+WDVMT+EE + R RI
Sbjct: 207 PSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRI 251
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRI 101
P + P+VT K + + L++A DG+WDVMT+EE + R RI
Sbjct: 204 PSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRI 248
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEV 93
P LTA P+VT +L +FLV+A DG+W+ M ++V
Sbjct: 322 PYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDV 358
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEV 93
P LTA P+VT +L +FLV+A DG+W+ M ++V
Sbjct: 322 PYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDV 358
>pdb|2I44|A Chain A, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|B Chain B, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|C Chain C, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
Length = 324
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 50 GKETMRLPKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEE 109
G + ++ L+ PDV + +++ ++A DG+WDV + + + G P
Sbjct: 234 GGKDLKXYGLSNQPDVRVVRVTPQHRVXILATDGLWDVXSAAQAVEIAXQARQEGRNP-- 291
Query: 110 ICEDLMTRCLAPDCQMGGLGCDNMTVVIVCF 140
+ L+ LA + Q DN+T V F
Sbjct: 292 -AQALVEXTLA-EQQSRNQSADNITAXTVFF 320
>pdb|1P9N|A Chain A, Crystal Structure Of Escherichia Coli Mobb.
pdb|1P9N|B Chain B, Crystal Structure Of Escherichia Coli Mobb
Length = 170
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 20/113 (17%)
Query: 33 NIRPG--RESNPGPSADKEGKETMRLPKLTALPDVTLRK----LST--------DWEFLV 78
IRPG + ++ DK GK++ L K A + + L T D +FL
Sbjct: 30 GIRPGLIKHTHHDXDVDKPGKDSYELRKAGAAQTIVASQQRWALXTETPDEEELDLQFLA 89
Query: 79 IACDG------IWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQM 125
D + + +EE++ V R G+G PEE+ D +A D +
Sbjct: 90 SRXDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPEELVIDRHVIAVASDVPL 142
>pdb|3T91|A Chain A, Structure Of The Phosphatase Domain Of The Cell Fate
Determinant Spoiie From Bacillus Subtilis
pdb|3T91|B Chain B, Structure Of The Phosphatase Domain Of The Cell Fate
Determinant Spoiie From Bacillus Subtilis
pdb|3T9Q|A Chain A, Structure Of The Phosphatase Domain Of The Cell Fate
Determinant Spoiie From Bacillus Subtilis (Mn Presoaked)
pdb|3T9Q|B Chain B, Structure Of The Phosphatase Domain Of The Cell Fate
Determinant Spoiie From Bacillus Subtilis (Mn Presoaked)
Length = 242
Score = 29.3 bits (64), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 75 EFLVIACDGIWDVMTNEEVSDFVRMRIGSGM---EPEEICEDLMTRCLAPDCQMGGLGCD 131
+ L++ DGI++ + E D R G+ +P+EI + LM + G D
Sbjct: 154 DLLIMMSDGIFEGPKHVENHDLWMKRKMKGLKTNDPQEIADLLMEEVIRTRS---GQIED 210
Query: 132 NMTVVIVCFLHGNPYSSLVNKCALLQ 157
+MTVV+V H P + + A+ Q
Sbjct: 211 DMTVVVVRIDHNTPKWASIPVPAIFQ 236
>pdb|1NP6|A Chain A, Crystal Structure Of Escherichia Coli Mobb
pdb|1NP6|B Chain B, Crystal Structure Of Escherichia Coli Mobb
Length = 174
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 20/111 (18%)
Query: 33 NIRPG--RESNPGPSADKEGKETMRLPKLTALPDVTLRK----LST--------DWEFLV 78
IRPG + ++ DK GK++ L K A + + L T D +FL
Sbjct: 34 GIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIVASQQRWALMTETPDEEELDLQFLA 93
Query: 79 IACDG------IWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDC 123
D + + +EE++ V R G+G PEE+ D +A D
Sbjct: 94 SRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPEELVIDRHVIAVASDV 144
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 20 NQPFRERTLSVQNNIRPGRESNPGPSADKEGKETMRLPKLTALPDVTLRKLSTDWEFL-- 77
++PF +S+ +PG + NP SA+ L K T + TL ST EF
Sbjct: 115 SKPFMSLGISIMIK-KPGTDGNPIESAED-------LSKQTEIAYGTLDSGSTK-EFFRR 165
Query: 78 --VIACDGIWDVMTNEEVSDFVR 98
+ D +W M + E S FVR
Sbjct: 166 SKIAVFDKMWTYMRSAEPSVFVR 188
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 50 GKETMRLPKLTALPDVTLRKLS-TDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPE 108
G ++ + A P+ KL D FLV+ DGI ++ ++E+ DFV
Sbjct: 294 GDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQ--------- 344
Query: 109 EICEDLMTRCLAPDCQMGGLGC-DNMTVVIVCF 140
C D A Q G DN T V+V F
Sbjct: 345 --CHDPNEAAHAVTEQAIQYGTEDNSTAVVVPF 375
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 50 GKETMRLPKLTALPDVTLRKLS-TDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPE 108
G ++ + A P+ KL D FLV+ DGI ++ ++E+ DFV +P
Sbjct: 180 GDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVN----QCHDPN 235
Query: 109 EICEDLMTRCLAPDCQMGGLGCDNMTVVIVCF 140
E + + + + DN T V+V F
Sbjct: 236 EAAHAVTEQAIQYGTE------DNSTAVVVPF 261
>pdb|3KHS|A Chain A, Crystal Structure Of Grouper Iridovirus Purine Nucleoside
Phosphorylase
pdb|3KHS|B Chain B, Crystal Structure Of Grouper Iridovirus Purine Nucleoside
Phosphorylase
pdb|3KHS|C Chain C, Crystal Structure Of Grouper Iridovirus Purine Nucleoside
Phosphorylase
pdb|3KHS|D Chain D, Crystal Structure Of Grouper Iridovirus Purine Nucleoside
Phosphorylase
Length = 285
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 5/34 (14%)
Query: 40 SNP--GPSADKEGKETMRLPKLTALPDVTLRKLS 71
+NP GP+ D EG+ R P +T++ D TLRK +
Sbjct: 141 ANPLTGPNDDTEGE---RFPSMTSVYDKTLRKYA 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,676,675
Number of Sequences: 62578
Number of extensions: 175994
Number of successful extensions: 484
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 27
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)