Query psy16174
Match_columns 157
No_of_seqs 177 out of 1731
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 22:40:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0697|consensus 100.0 9E-31 2E-35 207.5 11.1 126 15-146 163-296 (379)
2 KOG0698|consensus 100.0 1.9E-29 4.1E-34 207.8 12.6 120 19-144 184-307 (330)
3 PLN03145 Protein phosphatase 2 100.0 6.2E-28 1.3E-32 201.0 13.5 128 19-152 208-341 (365)
4 KOG0699|consensus 100.0 2.3E-28 5E-33 199.7 9.6 126 17-142 370-504 (542)
5 PTZ00224 protein phosphatase 2 99.9 2.1E-25 4.5E-30 186.7 13.9 132 2-148 138-278 (381)
6 PF00481 PP2C: Protein phospha 99.9 8.5E-27 1.9E-31 184.9 4.1 110 18-133 141-254 (254)
7 KOG0700|consensus 99.8 1.9E-20 4.1E-25 154.9 7.7 70 54-123 310-379 (390)
8 COG0631 PTC1 Serine/threonine 99.8 3.8E-19 8.3E-24 142.4 10.1 117 1-145 140-256 (262)
9 smart00332 PP2Cc Serine/threon 99.7 2.4E-17 5.1E-22 129.2 12.3 111 20-138 145-255 (255)
10 cd00143 PP2Cc Serine/threonine 99.7 3.5E-17 7.6E-22 127.7 13.0 112 21-140 143-254 (254)
11 KOG0618|consensus 99.6 5.9E-16 1.3E-20 138.9 9.9 114 20-144 661-775 (1081)
12 PRK14559 putative protein seri 99.6 3.5E-14 7.6E-19 125.7 11.6 91 43-145 547-639 (645)
13 KOG1323|consensus 99.5 5E-14 1.1E-18 115.0 8.3 105 38-142 360-488 (493)
14 KOG1379|consensus 98.9 9.5E-09 2.1E-13 83.5 9.4 75 64-139 237-329 (330)
15 TIGR02865 spore_II_E stage II 98.3 1.7E-06 3.7E-11 78.8 7.8 72 63-140 687-763 (764)
16 PF07228 SpoIIE: Stage II spor 98.2 8.8E-06 1.9E-10 61.2 7.8 69 66-140 117-192 (193)
17 smart00331 PP2C_SIG Sigma fact 97.7 0.00016 3.5E-09 54.5 7.5 54 63-119 139-192 (193)
18 COG2208 RsbU Serine phosphatas 97.3 0.0013 2.8E-08 55.0 8.5 70 67-141 290-366 (367)
19 PF13672 PP2C_2: Protein phosp 96.0 0.0055 1.2E-07 46.7 2.7 37 64-101 158-195 (212)
20 PF09436 DUF2016: Domain of un 68.3 3.1 6.7E-05 27.0 1.3 22 69-90 22-43 (72)
21 PF12095 DUF3571: Protein of u 64.5 21 0.00046 23.8 4.7 51 72-122 8-68 (83)
22 cd00534 DHNA_DHNTPE Dihydroneo 56.9 41 0.00089 23.2 5.5 58 79-141 42-101 (118)
23 TIGR03859 PQQ_PqqD coenzyme PQ 53.1 53 0.0011 21.3 5.2 41 73-116 15-55 (81)
24 PRK06369 nac nascent polypepti 51.9 81 0.0018 22.3 6.2 44 57-100 37-87 (115)
25 PF05402 PqqD: Coenzyme PQQ sy 51.6 42 0.00091 20.5 4.4 29 89-117 14-42 (68)
26 COG3700 AphA Acid phosphatase 51.3 29 0.00062 26.9 4.1 50 75-124 72-132 (237)
27 PRK11593 folB bifunctional dih 49.1 81 0.0017 21.8 6.0 45 79-123 42-88 (119)
28 TIGR00525 folB dihydroneopteri 45.9 96 0.0021 21.3 5.9 58 79-141 41-100 (116)
29 smart00331 PP2C_SIG Sigma fact 45.6 1.2E+02 0.0026 22.2 8.7 66 72-142 27-96 (193)
30 PF06972 DUF1296: Protein of u 44.5 46 0.001 20.7 3.5 27 88-117 19-45 (60)
31 PF14014 DUF4230: Protein of u 44.5 97 0.0021 22.2 6.0 41 59-99 74-114 (157)
32 PRK15322 invasion protein OrgB 42.1 94 0.002 24.3 5.7 48 72-120 146-194 (210)
33 PF02152 FolB: Dihydroneopteri 39.0 1.2E+02 0.0026 20.5 5.7 56 81-141 41-98 (113)
34 PRK05457 heat shock protein Ht 37.2 74 0.0016 25.8 4.8 27 75-101 116-142 (284)
35 KOG0697|consensus 34.3 7.2 0.00016 32.2 -1.5 33 9-42 167-199 (379)
36 PRK03072 heat shock protein Ht 32.7 68 0.0015 26.0 3.9 26 76-101 110-135 (288)
37 PRK11245 folX D-erythro-7,8-di 31.3 1.8E+02 0.0039 20.1 5.6 43 79-121 46-90 (120)
38 COG1539 FolB Dihydroneopterin 29.2 2.1E+02 0.0045 20.2 6.7 56 79-142 43-100 (121)
39 PF08069 Ribosomal_S13_N: Ribo 29.0 76 0.0016 19.8 2.8 32 85-116 25-56 (60)
40 PRK02391 heat shock protein Ht 28.5 92 0.002 25.4 4.0 26 76-101 116-141 (296)
41 TIGR00526 folB_dom FolB domain 28.5 2E+02 0.0043 19.7 5.5 57 79-141 42-101 (118)
42 TIGR03735 PRTRC_A PRTRC system 27.9 39 0.00084 26.1 1.6 53 70-122 22-91 (192)
43 PRK02079 pyrroloquinoline quin 27.8 1.5E+02 0.0033 19.7 4.3 40 58-101 23-62 (88)
44 PF07394 DUF1501: Protein of u 26.9 1.6E+02 0.0035 24.6 5.3 54 73-138 245-298 (392)
45 PRK04897 heat shock protein Ht 26.5 97 0.0021 25.2 3.8 26 76-101 120-145 (298)
46 TIGR00264 alpha-NAC-related pr 25.2 2.5E+02 0.0055 19.9 6.1 44 57-100 41-89 (116)
47 PRK03001 M48 family peptidase; 24.9 99 0.0021 24.9 3.5 25 77-101 108-132 (283)
48 PF01383 CpcD: CpcD/allophycoc 24.2 44 0.00096 20.3 1.1 17 19-35 35-51 (56)
49 PF06632 XRCC4: DNA double-str 24.2 2.4E+02 0.0053 23.7 5.8 60 58-121 9-76 (342)
50 PRK03982 heat shock protein Ht 23.3 1.5E+02 0.0032 23.9 4.3 25 77-101 109-133 (288)
51 COG2144 Selenophosphate synthe 23.2 84 0.0018 26.1 2.8 25 64-90 45-69 (324)
52 PF05762 VWA_CoxE: VWA domain 23.1 1.1E+02 0.0023 23.7 3.3 26 74-100 150-175 (222)
53 PRK01345 heat shock protein Ht 21.4 1.6E+02 0.0034 24.3 4.1 25 77-101 108-132 (317)
No 1
>KOG0697|consensus
Probab=99.97 E-value=9e-31 Score=207.52 Aligned_cols=126 Identities=31% Similarity=0.530 Sum_probs=117.8
Q ss_pred hhcCCChhhHHHHHHCCCEEecCCCCCCcccccccCCCCCC--------CCCeeeeceEEEEEecCCCeEEEEecCCccc
Q psy16174 15 RRQGRNQPFRERTLSVQNNIRPGRESNPGPSADKEGKETMR--------LPKLTALPDVTLRKLSTDWEFLVIACDGIWD 86 (157)
Q Consensus 15 ~r~~~~~~E~~Ri~~~gg~i~~~R~~g~g~~sr~~gd~~~k--------~~~vs~~Pdv~~~~l~~~d~flilaSDGlwd 86 (157)
...+-++.|++||+.+||.+.-.|++|.+.+||++||+.+| ++.||++|||........|+|+||||||+||
T Consensus 163 DHKP~~p~EkeRIqnAGGSVMIqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwD 242 (379)
T KOG0697|consen 163 DHKPYLPKEKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWD 242 (379)
T ss_pred CCCCCChHHHHHHhcCCCeEEEEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhh
Confidence 34567889999999999999999999999999999999876 4699999999999999888899999999999
Q ss_pred ccCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEEEecCCCCc
Q psy16174 87 VMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIVCFLHGNPY 146 (157)
Q Consensus 87 ~ls~~~~~~~v~~~~~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv~~~~~~~~ 146 (157)
+|+++|++++|++.+.-..++.++|+.+++.|+.+|+ +||||+++|.|..+|..
T Consensus 243 VMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhKGS------RDNMsivlvcfp~APkv 296 (379)
T KOG0697|consen 243 VMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHKGS------RDNMSIVLVCFPGAPKV 296 (379)
T ss_pred hcccHHHHHHHHhhheecccHHHHHHHHHHHHHhccC------ccCceEEEEecCCCCCC
Confidence 9999999999999998889999999999999999999 99999999999988754
No 2
>KOG0698|consensus
Probab=99.96 E-value=1.9e-29 Score=207.84 Aligned_cols=120 Identities=29% Similarity=0.395 Sum_probs=111.7
Q ss_pred CChhhHHHHHHCCCEEe----cCCCCCCcccccccCCCCCCCCCeeeeceEEEEEecCCCeEEEEecCCcccccCHHHHH
Q psy16174 19 RNQPFRERTLSVQNNIR----PGRESNPGPSADKEGKETMRLPKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVS 94 (157)
Q Consensus 19 ~~~~E~~Ri~~~gg~i~----~~R~~g~g~~sr~~gd~~~k~~~vs~~Pdv~~~~l~~~d~flilaSDGlwd~ls~~~~~ 94 (157)
....|+.||+++||+|. +.|++|.+.++|+|||..+|.++|+++||+....+++.|+|||||||||||+|++|+++
T Consensus 184 ~~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav 263 (330)
T KOG0698|consen 184 DREDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAV 263 (330)
T ss_pred CcHHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHH
Confidence 34899999999999998 35999999999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEEEecCCC
Q psy16174 95 DFVRMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIVCFLHGN 144 (157)
Q Consensus 95 ~~v~~~~~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv~~~~~~ 144 (157)
++|+..+.....+..++..|...|+.+++ .||||||||.|.+.+
T Consensus 264 ~~V~~~~~~~~~~~~a~~~l~~~a~~~~s------~DnitvvvV~l~~~~ 307 (330)
T KOG0698|consen 264 DLVRDELASISSPLAAAKLLATEALSRGS------KDNITVVVVRLKSSP 307 (330)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhhcCC------CCCeEEEEEEecCcc
Confidence 99999764457899999999999999999 999999999998864
No 3
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.95 E-value=6.2e-28 Score=201.01 Aligned_cols=128 Identities=28% Similarity=0.447 Sum_probs=112.8
Q ss_pred CChhhHHHHHHCCCEEecCCCCCCcccccccCCCCCCC------CCeeeeceEEEEEecCCCeEEEEecCCcccccCHHH
Q psy16174 19 RNQPFRERTLSVQNNIRPGRESNPGPSADKEGKETMRL------PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEE 92 (157)
Q Consensus 19 ~~~~E~~Ri~~~gg~i~~~R~~g~g~~sr~~gd~~~k~------~~vs~~Pdv~~~~l~~~d~flilaSDGlwd~ls~~~ 92 (157)
....|++||.+.||.+..+|+.|...++|++||+.+|. ..++++|||..++++++|.|||||||||||+|++++
T Consensus 208 ~~~~E~~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee 287 (365)
T PLN03145 208 MCSKERKRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQN 287 (365)
T ss_pred CCHHHHHHHHHcCCceecceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHH
Confidence 34578899999999999999998888999999987653 258999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEEEecCCCCchhHHHh
Q psy16174 93 VSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIVCFLHGNPYSSLVNK 152 (157)
Q Consensus 93 ~~~~v~~~~~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv~~~~~~~~~~~~~~ 152 (157)
+++++++.+....+++++|+.|++.|+.+++ .||||||||+|+..++......+
T Consensus 288 ~v~~i~~~l~~~~~p~~aa~~Lv~~Al~rgs------~DNITvIVV~l~~~~~~~~~~~~ 341 (365)
T PLN03145 288 AVDFARRRLQEHNDPVMCSKELVDEALKRKS------GDNLAVVVVCFQSQPPPNLVAPR 341 (365)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC------CCCEEEEEEEeecCCCccccccc
Confidence 9999988877667899999999999999999 99999999999987665444433
No 4
>KOG0699|consensus
Probab=99.95 E-value=2.3e-28 Score=199.73 Aligned_cols=126 Identities=35% Similarity=0.630 Sum_probs=117.2
Q ss_pred cCCChhhHHHHHHCCCEEe-cCCCCCCcccccccCCCCCC--------CCCeeeeceEEEEEecCCCeEEEEecCCcccc
Q psy16174 17 QGRNQPFRERTLSVQNNIR-PGRESNPGPSADKEGKETMR--------LPKLTALPDVTLRKLSTDWEFLVIACDGIWDV 87 (157)
Q Consensus 17 ~~~~~~E~~Ri~~~gg~i~-~~R~~g~g~~sr~~gd~~~k--------~~~vs~~Pdv~~~~l~~~d~flilaSDGlwd~ 87 (157)
.+...-|-.||.++||.|. .+||+|.+.+||+|||..+| +++|++.|||....|++.++|+|+||||+|++
T Consensus 370 KPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~ 449 (542)
T KOG0699|consen 370 KPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRAFGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNS 449 (542)
T ss_pred CcccHHHHHHHHhcCCeEeecceecCccchhhhhhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhh
Confidence 4455678889999999997 89999999999999997665 46999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEEEecC
Q psy16174 88 MTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIVCFLH 142 (157)
Q Consensus 88 ls~~~~~~~v~~~~~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv~~~~ 142 (157)
|+.|+++++|+..+..+..+.++|++|++.|++......|.++||||||++.|.+
T Consensus 450 MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp~T~GDGTGCDNMT~ii~~Fkr 504 (542)
T KOG0699|consen 450 MSSQEVVDFVRDLLAKNSSLSEICEELCDACLAPSTDGDGTGCDNMTVIITTFKR 504 (542)
T ss_pred ccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCCCCCCcCCCcceEEEEEecc
Confidence 9999999999999999999999999999999999998889999999999999975
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.93 E-value=2.1e-25 Score=186.67 Aligned_cols=132 Identities=22% Similarity=0.346 Sum_probs=111.7
Q ss_pred CCccccccccchhhhcCCChhhHHHHHHCCCEEecCCCCCCcccccccCCCCCC--------CCCeeeeceEEEEEecCC
Q psy16174 2 HDQTVSEVLSSRKRRQGRNQPFRERTLSVQNNIRPGRESNPGPSADKEGKETMR--------LPKLTALPDVTLRKLSTD 73 (157)
Q Consensus 2 ~~~t~~~~l~~e~~r~~~~~~E~~Ri~~~gg~i~~~R~~g~g~~sr~~gd~~~k--------~~~vs~~Pdv~~~~l~~~ 73 (157)
.++|.||.. ....|+.||.+.||.+.++|++|...++|++||..+| ++.|+++|||..+.+.++
T Consensus 138 ~~LT~DH~~--------~~~~E~~RI~~~gg~v~~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~ 209 (381)
T PTZ00224 138 VFATEDHKP--------NNPGERQRIEACGGRVVSNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSN 209 (381)
T ss_pred EEcccCCCC--------CCHHHHhHHHHccCEeccccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCC
Confidence 345666554 3445899999999999999999988899999997644 245889999999988865
Q ss_pred CeEEEEecCCccc-ccCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEEEecCCCCchh
Q psy16174 74 WEFLVIACDGIWD-VMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIVCFLHGNPYSS 148 (157)
Q Consensus 74 d~flilaSDGlwd-~ls~~~~~~~v~~~~~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv~~~~~~~~~~ 148 (157)
| ||||||||||| +++++++++++.+.+....+++.+|+.|++.|+.+++ .||||||||+|...++...
T Consensus 210 D-~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~rGs------~DNITvIvV~~~~~~~~~~ 278 (381)
T PTZ00224 210 D-FIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIRRGS------KDNISCLIVQLKDGASYAK 278 (381)
T ss_pred C-EEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC------CCCEEEEEEEeeCCCChhh
Confidence 5 99999999999 8999999999987766557899999999999999999 9999999999988665443
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.93 E-value=8.5e-27 Score=184.92 Aligned_cols=110 Identities=35% Similarity=0.538 Sum_probs=95.3
Q ss_pred CCChhhHHHHHHCCCEEe-cCCCCCCcccccccCCCCCCC---CCeeeeceEEEEEecCCCeEEEEecCCcccccCHHHH
Q psy16174 18 GRNQPFRERTLSVQNNIR-PGRESNPGPSADKEGKETMRL---PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEV 93 (157)
Q Consensus 18 ~~~~~E~~Ri~~~gg~i~-~~R~~g~g~~sr~~gd~~~k~---~~vs~~Pdv~~~~l~~~d~flilaSDGlwd~ls~~~~ 93 (157)
+....|+.||+++||.+. .+|++|.+.+||++||..+|+ ++|+++|+|..++++++|+|||||||||||+|+++++
T Consensus 141 ~~~~~E~~RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei 220 (254)
T PF00481_consen 141 PSNPDERERIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEI 220 (254)
T ss_dssp TTSHHHHHHHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHH
T ss_pred cchhhccceeeccccccccchhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHH
Confidence 356789999999999998 899999999999999999997 7999999999999999899999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCe
Q psy16174 94 SDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNM 133 (157)
Q Consensus 94 ~~~v~~~~~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~DNi 133 (157)
++++.+....+..++.+|+.|++.|+++++ .|||
T Consensus 221 ~~~v~~~~~~~~~~~~~a~~L~~~A~~~gs------~DNi 254 (254)
T PF00481_consen 221 VDIVRESLNSGRSPQEAAEKLVDEAIARGS------KDNI 254 (254)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHTTH------HSHE
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCC------CCCC
Confidence 999999865545699999999999999999 9997
No 7
>KOG0700|consensus
Probab=99.82 E-value=1.9e-20 Score=154.90 Aligned_cols=70 Identities=30% Similarity=0.494 Sum_probs=62.3
Q ss_pred CCCCCeeeeceEEEEEecCCCeEEEEecCCcccccCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCC
Q psy16174 54 MRLPKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDC 123 (157)
Q Consensus 54 ~k~~~vs~~Pdv~~~~l~~~d~flilaSDGlwd~ls~~~~~~~v~~~~~~~~~~~~~a~~Lv~~A~~~~~ 123 (157)
+++||+||+|+|++++|+++|+|||||||||||+|||||++.+|..++.....-+.+|+.|++.|+.+++
T Consensus 310 ~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~aa 379 (390)
T KOG0700|consen 310 GTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRAA 379 (390)
T ss_pred CCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhhh
Confidence 4578999999999999999999999999999999999999999999865433346689999999999876
No 8
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.79 E-value=3.8e-19 Score=142.45 Aligned_cols=117 Identities=27% Similarity=0.458 Sum_probs=98.9
Q ss_pred CCCccccccccchhhhcCCChhhHHHHHHCCCEEecCCCCCCcccccccCCCCCCCCCeeeeceEEEEEecCCCeEEEEe
Q psy16174 1 LHDQTVSEVLSSRKRRQGRNQPFRERTLSVQNNIRPGRESNPGPSADKEGKETMRLPKLTALPDVTLRKLSTDWEFLVIA 80 (157)
Q Consensus 1 ~~~~t~~~~l~~e~~r~~~~~~E~~Ri~~~gg~i~~~R~~g~g~~sr~~gd~~~k~~~vs~~Pdv~~~~l~~~d~flila 80 (157)
++++|.||.+.++..+...+.+|..+- . .|.+ .++|++|+... .+|++....+.++ +|+|||
T Consensus 140 ~~~lT~DH~~~~~~~~~~~~~~~~~~~-------~-~~~~---~ltralG~~~~------~~p~~~~~~~~~~-d~llL~ 201 (262)
T COG0631 140 LKQLTEDHSLVNRLEQRGIITPEEARS-------H-PRRN---ALTRALGDFDL------LEPDITELELEPG-DFLLLC 201 (262)
T ss_pred eEEeccCCcHHHHHHHhcCCCHHHHHh-------C-ccch---hhhhhcCCCcc------cceeEEEEEcCCC-CEEEEE
Confidence 478899999877777766666666655 2 3333 58999997654 8899999999987 799999
Q ss_pred cCCcccccCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEEEecCCCC
Q psy16174 81 CDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIVCFLHGNP 145 (157)
Q Consensus 81 SDGlwd~ls~~~~~~~v~~~~~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv~~~~~~~ 145 (157)
||||||+++++++++++... .+++++++.|++.|+.+++ .||||+++|.+...++
T Consensus 202 SDGl~d~v~~~~i~~il~~~----~~~~~~~~~li~~a~~~g~------~DNiT~ilv~~~~~~~ 256 (262)
T COG0631 202 SDGLWDVVSDDEIVDILKNS----ETPQEAADKLIELALEGGG------PDNITVVLVRLNGEGE 256 (262)
T ss_pred CCCCccCcCHHHHHHHHhcC----CCHHHHHHHHHHHHHhcCC------CCceEEEEEEeecccc
Confidence 99999999999999999974 8999999999999999888 9999999999987653
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.74 E-value=2.4e-17 Score=129.23 Aligned_cols=111 Identities=34% Similarity=0.544 Sum_probs=95.6
Q ss_pred ChhhHHHHHHCCCEEecCCCCCCcccccccCCCCCCCCCeeeeceEEEEEecCCCeEEEEecCCcccccCHHHHHHHHHH
Q psy16174 20 NQPFRERTLSVQNNIRPGRESNPGPSADKEGKETMRLPKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRM 99 (157)
Q Consensus 20 ~~~E~~Ri~~~gg~i~~~R~~g~g~~sr~~gd~~~k~~~vs~~Pdv~~~~l~~~d~flilaSDGlwd~ls~~~~~~~v~~ 99 (157)
...|..||...++.+..++..+...++|++|+...+ ++++++|++...++.+.+++|+||||||||.++.+++.+++.+
T Consensus 145 ~~~~~~~i~~~~~~~~~~~~~~~~~lt~~~g~~~~~-~~i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~ 223 (255)
T smart00332 145 NEDERARIEAAGGFVINGRVNGVLALSRAIGDFFLK-PYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRK 223 (255)
T ss_pred CHHHHHHHHHcCCEEECCeECCeEecccccCCHhhc-CCeEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHHHH
Confidence 455889999999999877777667789999988776 7999999999999754566899999999999999999999988
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEE
Q psy16174 100 RIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIV 138 (157)
Q Consensus 100 ~~~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv 138 (157)
.... .++.++|+.|++.|..++. .||+|+++|
T Consensus 224 ~~~~-~~~~~~~~~l~~~a~~~~~------~Dn~T~ivv 255 (255)
T smart00332 224 HLSK-SDPEEAAKRLIDLALARGS------KDNITVIVV 255 (255)
T ss_pred Hhhc-CCHHHHHHHHHHHHHHcCC------CCCeEEEEC
Confidence 7322 2699999999999999988 999999985
No 10
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.74 E-value=3.5e-17 Score=127.67 Aligned_cols=112 Identities=33% Similarity=0.537 Sum_probs=95.0
Q ss_pred hhhHHHHHHCCCEEecCCCCCCcccccccCCCCCCCCCeeeeceEEEEEecCCCeEEEEecCCcccccCHHHHHHHHHHH
Q psy16174 21 QPFRERTLSVQNNIRPGRESNPGPSADKEGKETMRLPKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMR 100 (157)
Q Consensus 21 ~~E~~Ri~~~gg~i~~~R~~g~g~~sr~~gd~~~k~~~vs~~Pdv~~~~l~~~d~flilaSDGlwd~ls~~~~~~~v~~~ 100 (157)
..|+.|+...+|.+...+..+...++|++|+..++ +++.++|++..+.+.+.+++|+||||||||.++++++.+++...
T Consensus 143 ~~~~~~i~~~~~~~~~~~~~~~~~~t~~lG~~~~~-~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~ 221 (254)
T cd00143 143 EEERERIEKAGGRVSNGRVPGVLAVTRALGDFDLK-PGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSE 221 (254)
T ss_pred hHHHHHHHHcCCcEEeCEEcCceeeccccCCcccc-CCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHH
Confidence 57889999999987655555556689999998777 68899999999999555568899999999999999999999886
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEEEe
Q psy16174 101 IGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIVCF 140 (157)
Q Consensus 101 ~~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv~~ 140 (157)
... .+++++|+.|++.|...+. .||+|+++++|
T Consensus 222 ~~~-~~~~~~a~~l~~~a~~~~~------~Dn~t~i~~~~ 254 (254)
T cd00143 222 LAK-EDLQEAAQELVDLALRRGS------HDNITVVVVRL 254 (254)
T ss_pred hcc-cCHHHHHHHHHHHHHhCCC------CCCEEEEEEeC
Confidence 211 1799999999999999998 99999999975
No 11
>KOG0618|consensus
Probab=99.65 E-value=5.9e-16 Score=138.89 Aligned_cols=114 Identities=20% Similarity=0.318 Sum_probs=107.1
Q ss_pred ChhhHHHHHHCCCEEe-cCCCCCCcccccccCCCCCCCCCeeeeceEEEEEecCCCeEEEEecCCcccccCHHHHHHHHH
Q psy16174 20 NQPFRERTLSVQNNIR-PGRESNPGPSADKEGKETMRLPKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVR 98 (157)
Q Consensus 20 ~~~E~~Ri~~~gg~i~-~~R~~g~g~~sr~~gd~~~k~~~vs~~Pdv~~~~l~~~d~flilaSDGlwd~ls~~~~~~~v~ 98 (157)
..+|.+||+..+|+|. .++++|.-..+|++|.+... |.|-|.|+|....+++.|+|||+|+-+||++||.+++++.++
T Consensus 661 ~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~-P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vR 739 (1081)
T KOG0618|consen 661 DREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLF-PHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVR 739 (1081)
T ss_pred CHHHHHHHHHhcCeecCCCeeeceeeeeeeccccccc-ccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHh
Confidence 6789999999999997 89999988899999988887 599999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEEEecCCC
Q psy16174 99 MRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIVCFLHGN 144 (157)
Q Consensus 99 ~~~~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv~~~~~~ 144 (157)
.. .+|-.||++|++.|.+.|. .||++|+||+|....
T Consensus 740 n~----~dpL~AAkKL~d~AqSYgc------~~nv~vlVv~l~~~~ 775 (1081)
T KOG0618|consen 740 NV----EDPLLAAKKLCDLAQSYGC------AENVSVLVVRLNHLE 775 (1081)
T ss_pred cC----CchHHHHHHHHHHHHhccc------ccCeeEEEEEeecch
Confidence 76 9999999999999999999 999999999998753
No 12
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.55 E-value=3.5e-14 Score=125.67 Aligned_cols=91 Identities=15% Similarity=0.207 Sum_probs=70.0
Q ss_pred cccccccCCCCCCCCCeeeeceEEEEEecCCCeEEEEecCCcccc--cCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy16174 43 GPSADKEGKETMRLPKLTALPDVTLRKLSTDWEFLVIACDGIWDV--MTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLA 120 (157)
Q Consensus 43 g~~sr~~gd~~~k~~~vs~~Pdv~~~~l~~~d~flilaSDGlwd~--ls~~~~~~~v~~~~~~~~~~~~~a~~Lv~~A~~ 120 (157)
..++|++|+...+ ..+|++..+.+.++ +||+||||||||. +.. .+.+.+...+....++.++|+.|++.|+.
T Consensus 547 ~~LTrALG~~~~~----~l~Pdi~~~~L~~g-D~lLLCSDGL~D~~~ve~-~~~~~l~~il~~~~~l~~aa~~Li~~Al~ 620 (645)
T PRK14559 547 YQLTQALGPRDNS----AIQPDIQFLEIEED-TLLLLCSDGLSDNDLLET-HWQTHLLPLLSSSANLDQGLNKLIDLANQ 620 (645)
T ss_pred ceeeeccCCCCCC----cccceEEEEEcCCC-CEEEEECCCCCCCcccch-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4589999976443 25899999988764 5888999999994 443 33333334444447899999999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEecCCCC
Q psy16174 121 PDCQMGGLGCDNMTVVIVCFLHGNP 145 (157)
Q Consensus 121 ~~~~~~~~~~DNiTvivv~~~~~~~ 145 (157)
+++ .||||||||++...+.
T Consensus 621 ~gg------~DNITvIvV~l~~~p~ 639 (645)
T PRK14559 621 YNG------HDNITAILVRLKVRPQ 639 (645)
T ss_pred cCC------CCcEEEEEEEeccCCC
Confidence 999 9999999999987654
No 13
>KOG1323|consensus
Probab=99.51 E-value=5e-14 Score=114.96 Aligned_cols=105 Identities=24% Similarity=0.370 Sum_probs=78.6
Q ss_pred CCCCCcccccccCCCCCC--------CCCeeeeceEEEEEecC----CCeEEEEecCCcccccCHHHHHHHHHHHhcCC-
Q psy16174 38 RESNPGPSADKEGKETMR--------LPKLTALPDVTLRKLST----DWEFLVIACDGIWDVMTNEEVSDFVRMRIGSG- 104 (157)
Q Consensus 38 R~~g~g~~sr~~gd~~~k--------~~~vs~~Pdv~~~~l~~----~d~flilaSDGlwd~ls~~~~~~~v~~~~~~~- 104 (157)
|+.+...++|.+||..++ +|.+++.|+|+++++++ .|+.+|||||||||++||++++.+|++.+...
T Consensus 360 Rll~TigVsRGlGDH~Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~d 439 (493)
T KOG1323|consen 360 RLLATIGVSRGLGDHHLKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTD 439 (493)
T ss_pred hhhhhheeccccCcceeeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCC
Confidence 444445567777776654 57999999999999883 56799999999999999999999999988653
Q ss_pred -CC---HHHHHHHHHHHHHhCCCCC-------CCCCCCCeeEEEEEecC
Q psy16174 105 -ME---PEEICEDLMTRCLAPDCQM-------GGLGCDNMTVVIVCFLH 142 (157)
Q Consensus 105 -~~---~~~~a~~Lv~~A~~~~~~~-------~~~~~DNiTvivv~~~~ 142 (157)
.+ .-.+|+.|+..|...-... +-..-|+|||.||.+..
T Consensus 440 p~Dp~RYt~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~~ 488 (493)
T KOG1323|consen 440 PADPSRYTQAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLKY 488 (493)
T ss_pred CCChhHHHHHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEeccC
Confidence 22 3457788887775532211 11346999999999865
No 14
>KOG1379|consensus
Probab=98.90 E-value=9.5e-09 Score=83.54 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=61.2
Q ss_pred eEEEEEecCCCeEEEEecCCcccccCHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhCCCCC-----------------
Q psy16174 64 DVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIG-SGMEPEEICEDLMTRCLAPDCQM----------------- 125 (157)
Q Consensus 64 dv~~~~l~~~d~flilaSDGlwd~ls~~~~~~~v~~~~~-~~~~~~~~a~~Lv~~A~~~~~~~----------------- 125 (157)
+++.+++.++| .||||||||||.|.+++++.++..... ...+++..|+.|++.|.....+.
T Consensus 237 d~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~ 315 (330)
T KOG1379|consen 237 DVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKA 315 (330)
T ss_pred ceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCccc
Confidence 56677777766 788999999999999999999988766 55789999999999998765431
Q ss_pred CCCCCCCeeEEEEE
Q psy16174 126 GGLGCDNMTVVIVC 139 (157)
Q Consensus 126 ~~~~~DNiTvivv~ 139 (157)
.|...|+|||++..
T Consensus 316 ~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 316 YGGKPDDITVVLSS 329 (330)
T ss_pred CCCCcccEEEEEec
Confidence 24468999999975
No 15
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=98.32 E-value=1.7e-06 Score=78.76 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=51.1
Q ss_pred ceEEEEEecCCCeEEEEecCCcccccCHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEE
Q psy16174 63 PDVTLRKLSTDWEFLVIACDGIWDVMTNEE-----VSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVI 137 (157)
Q Consensus 63 Pdv~~~~l~~~d~flilaSDGlwd~ls~~~-----~~~~v~~~~~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTviv 137 (157)
++....++.++| +|+|+|||+||..++++ +.+.+.+. ...+|+++++.|++.|+.... +...||+|+++
T Consensus 687 ~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~--~~~~p~ela~~Il~~a~~~~~---~~~~DD~Tvlv 760 (764)
T TIGR02865 687 VELVRKKLKNGD-LIVMVSDGVLEGEKEVEGKVLWLVRKLKET--NTNDPEEIAEYLLEKAKELRS---GKIKDDMTVIV 760 (764)
T ss_pred cceEEEEeCCCC-EEEEECCCCCcCCcccccHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhcC---CCCCCCeEEEE
Confidence 344455565655 78899999999987532 44444332 126799999999999987643 12389999999
Q ss_pred EEe
Q psy16174 138 VCF 140 (157)
Q Consensus 138 v~~ 140 (157)
+++
T Consensus 761 irv 763 (764)
T TIGR02865 761 AKV 763 (764)
T ss_pred EEe
Confidence 987
No 16
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=98.18 E-value=8.8e-06 Score=61.17 Aligned_cols=69 Identities=19% Similarity=0.329 Sum_probs=46.0
Q ss_pred EEEEecCCCeEEEEecCCcccccCHHH-------HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEE
Q psy16174 66 TLRKLSTDWEFLVIACDGIWDVMTNEE-------VSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIV 138 (157)
Q Consensus 66 ~~~~l~~~d~flilaSDGlwd~ls~~~-------~~~~v~~~~~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv 138 (157)
..+.+.++| .|+|+||||+|....+. ..+++.+. ...+++++++.|++.+...+ .+...||+|++++
T Consensus 117 ~~~~l~~gd-~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~~~~---~~~~~DD~tvl~~ 190 (193)
T PF07228_consen 117 QEIQLEPGD-RLLLYTDGLFEALNEDGEFFGEERLLELLDEN--RGLSPQEIIDALLEAIDRFG---KGPLRDDITVLVI 190 (193)
T ss_dssp EEEE--TTE-EEEEECHHHCTTTCHHCHHCCCHHHHHHHHCH--TTS-HHHHHHHHHHHHHHHT---TSSTSS-EEEEEE
T ss_pred eEEEecccc-EEEEeCCChhhccCCccchhHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHhc---CCCCCCceEEEEE
Confidence 344444554 67899999999985443 34444433 23679999999999988732 1233899999999
Q ss_pred Ee
Q psy16174 139 CF 140 (157)
Q Consensus 139 ~~ 140 (157)
++
T Consensus 191 ~~ 192 (193)
T PF07228_consen 191 RR 192 (193)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 17
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=97.73 E-value=0.00016 Score=54.49 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=42.8
Q ss_pred ceEEEEEecCCCeEEEEecCCcccccCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16174 63 PDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCL 119 (157)
Q Consensus 63 Pdv~~~~l~~~d~flilaSDGlwd~ls~~~~~~~v~~~~~~~~~~~~~a~~Lv~~A~ 119 (157)
++...+.+.++| .|+|+||||||.++.+++.+++.+.. ..+++++++.+++.+.
T Consensus 139 ~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~l~~~l~~~~--~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 139 VDVRELTLEPGD-LLLLYTDGLTEARNPERLEELLEELL--GSPPAEIAQRILEELL 192 (193)
T ss_pred ceeEEEeeCCCC-EEEEECCCccccCChHHHHHHHHHhc--CCCHHHHHHHHHHHHh
Confidence 455666676766 66799999999999999999998864 2568889998888764
No 18
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=97.33 E-value=0.0013 Score=54.98 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=50.2
Q ss_pred EEEecCCCeEEEEecCCcccc-------cCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEEE
Q psy16174 67 LRKLSTDWEFLVIACDGIWDV-------MTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIVC 139 (157)
Q Consensus 67 ~~~l~~~d~flilaSDGlwd~-------ls~~~~~~~v~~~~~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv~ 139 (157)
...+.+ ++.++|.|||+.|. +..+...+.+.+. .+.+++++++.+++....... .....||||+++++
T Consensus 290 ~~~l~~-gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~i~~~l~~~~~--~~~~~DDiTll~lk 364 (367)
T COG2208 290 SLQLEP-GDLLVLYTDGVTEARNSDGEFFGLERLLKILGRL--LGQPAEEILEAILESLEELQG--DQIQDDDITLLVLK 364 (367)
T ss_pred eEEecC-CCEEEEEcCCeeeeecCCccEecHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHhhC--CccccCceEEEEEE
Confidence 444545 66889999999994 4556666666652 236799999999988777443 12337889999999
Q ss_pred ec
Q psy16174 140 FL 141 (157)
Q Consensus 140 ~~ 141 (157)
+.
T Consensus 365 ~~ 366 (367)
T COG2208 365 VK 366 (367)
T ss_pred ec
Confidence 85
No 19
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=95.98 E-value=0.0055 Score=46.72 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=18.8
Q ss_pred eEEEEEecCCCeEEEEecCCcccccCHHH-HHHHHHHHh
Q psy16174 64 DVTLRKLSTDWEFLVIACDGIWDVMTNEE-VSDFVRMRI 101 (157)
Q Consensus 64 dv~~~~l~~~d~flilaSDGlwd~ls~~~-~~~~v~~~~ 101 (157)
++..+.+.+.+ .|+|||||||+.+...+ +..++.+.+
T Consensus 158 ~~~~~~~~~~d-~ilL~SDG~~~~l~~~~~~~~~l~~~~ 195 (212)
T PF13672_consen 158 QYGSIPLEEGD-VILLCSDGVWDNLRSYEDLEQFLKDLW 195 (212)
T ss_dssp EEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH-----
T ss_pred eEEEEEcCCCC-EEEEECcCccccCCCHHHHHHHhhhcc
Confidence 44444544555 56799999999998655 556665543
No 20
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=68.35 E-value=3.1 Score=27.04 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=15.5
Q ss_pred EecCCCeEEEEecCCcccccCH
Q psy16174 69 KLSTDWEFLVIACDGIWDVMTN 90 (157)
Q Consensus 69 ~l~~~d~flilaSDGlwd~ls~ 90 (157)
.+...++-+++|+||+|=.+..
T Consensus 22 ~l~~~G~Rllva~nGv~lEv~r 43 (72)
T PF09436_consen 22 PLERPGHRLLVASNGVFLEVRR 43 (72)
T ss_pred ccccCCcEEEEecCcEEEEEec
Confidence 3454556677999999977653
No 21
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=64.49 E-value=21 Score=23.79 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=31.1
Q ss_pred CCCeEEEEecCCcccccCHHHHHHHHHHHhcCC----------CCHHHHHHHHHHHHHhCC
Q psy16174 72 TDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSG----------MEPEEICEDLMTRCLAPD 122 (157)
Q Consensus 72 ~~d~flilaSDGlwd~ls~~~~~~~v~~~~~~~----------~~~~~~a~~Lv~~A~~~~ 122 (157)
+.|.|+||-.+-==.++|.+|....+...+... .+.++.|+.|++.++.--
T Consensus 8 ~~d~yVvLEp~~~Eqflt~~Ell~~Lk~~L~~~~~LP~dL~~~~s~~~qa~~Lldt~CeLe 68 (83)
T PF12095_consen 8 QEDHYVVLEPGQPEQFLTPEELLEKLKEWLQNQDDLPPDLAKFSSVEEQAQYLLDTACELE 68 (83)
T ss_dssp ----EEEEESSS-SEEE-HHHHHHHHHHHHHHTTTS-HHHHH---HHHHHHHHHHH---EE
T ss_pred ccCCEEEecCCCCcccCCHHHHHHHHHHHHHcCCCCCHHHHhCCCHHHHHHHHHHhceeee
Confidence 567888888665555789999988887776542 567889999999987643
No 22
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=56.93 E-value=41 Score=23.20 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=42.8
Q ss_pred EecCCcccccCHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEEEec
Q psy16174 79 IACDGIWDVMTNEEVSDFVRMRIGSG--MEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIVCFL 141 (157)
Q Consensus 79 laSDGlwd~ls~~~~~~~v~~~~~~~--~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv~~~ 141 (157)
-+||-|=+.++...+.+.+.+.+... ..++.+|..|.+..+..... ...+++-|-+..
T Consensus 42 ~~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~~~~~-----v~~v~v~v~K~~ 101 (118)
T cd00534 42 GESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLEDYPK-----VSAIKVKVEKPN 101 (118)
T ss_pred hccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHhCCC-----ceEEEEEEECCC
Confidence 47899999999999999998876543 46788999999998876321 455555555443
No 23
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=53.06 E-value=53 Score=21.32 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=20.9
Q ss_pred CCeEEEEecCCcccccCHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16174 73 DWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMT 116 (157)
Q Consensus 73 ~d~flilaSDGlwd~ls~~~~~~~v~~~~~~~~~~~~~a~~Lv~ 116 (157)
.+.|+++...| ++.-++....|.+.+....+..++++.|.+
T Consensus 15 ~~~~Vl~~p~~---~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~ 55 (81)
T TIGR03859 15 QDCYVLLYPEG---MVKLNDSAGEILELCDGKRSLAEIIQELAQ 55 (81)
T ss_pred cCcEEEEcCCc---eeeeChHHHHHHHHccCCCcHHHHHHHHHH
Confidence 34455555543 344445555555555544555555555543
No 24
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=51.89 E-value=81 Score=22.32 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=32.0
Q ss_pred CCeeeeceEEEEEecCCCeEEEEecCCccc-------ccCHHHHHHHHHHH
Q psy16174 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWD-------VMTNEEVSDFVRMR 100 (157)
Q Consensus 57 ~~vs~~Pdv~~~~l~~~d~flilaSDGlwd-------~ls~~~~~~~v~~~ 100 (157)
.+|+..|+|+.......+.|.|++..-.-| .++.+++--++.+.
T Consensus 37 ~~Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~~~~~i~~edI~lv~~q~ 87 (115)
T PRK06369 37 EIVFENPQVTVMDAQGQKTYQIVGEPEEVEKEAEKEVEIPEEDIELVAEQT 87 (115)
T ss_pred EEEEcCCeEEEEecCCCcEEEEEeccEEeeccccccCCCCHHHHHHHHHHH
Confidence 489999999988888778899998877654 35666654444443
No 25
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=51.64 E-value=42 Score=20.47 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16174 89 TNEEVSDFVRMRIGSGMEPEEICEDLMTR 117 (157)
Q Consensus 89 s~~~~~~~v~~~~~~~~~~~~~a~~Lv~~ 117 (157)
.-++....|.+.+..+.+..++++.|.+.
T Consensus 14 ~Ln~~a~~Iw~~~~g~~t~~ei~~~l~~~ 42 (68)
T PF05402_consen 14 TLNETAAFIWELLDGPRTVEEIVDALAEE 42 (68)
T ss_dssp ---THHHHHHHH--SSS-HHHHHHHHHHH
T ss_pred cccHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 33444455555554445555555555443
No 26
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=51.27 E-value=29 Score=26.92 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=34.5
Q ss_pred eEEEEecCCcc-----------cccCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCC
Q psy16174 75 EFLVIACDGIW-----------DVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQ 124 (157)
Q Consensus 75 ~flilaSDGlw-----------d~ls~~~~~~~v~~~~~~~~~~~~~a~~Lv~~A~~~~~~ 124 (157)
+-++..|.|+| |++.++..-+.+...-.+..-|.++|..|++.-.+||..
T Consensus 72 DTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~ 132 (237)
T COG3700 72 DTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDA 132 (237)
T ss_pred CeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCe
Confidence 45668998888 455556655555543333355899999999998888753
No 27
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=49.10 E-value=81 Score=21.84 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=36.8
Q ss_pred EecCCcccccCHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhCCC
Q psy16174 79 IACDGIWDVMTNEEVSDFVRMRIGSG--MEPEEICEDLMTRCLAPDC 123 (157)
Q Consensus 79 laSDGlwd~ls~~~~~~~v~~~~~~~--~~~~~~a~~Lv~~A~~~~~ 123 (157)
..||-+=+.++...+.+.+.+..... .-++.+|+.|.+..+..-.
T Consensus 42 ~~~Ddl~~tidY~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~~ 88 (119)
T PRK11593 42 AKSDDVADCLSYADIAETVISHVEGARFALVERVAEEVAELLLARFN 88 (119)
T ss_pred ccccCHhhccCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhCC
Confidence 56899999999999999998877643 4678899999888876643
No 28
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=45.87 E-value=96 Score=21.26 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=42.0
Q ss_pred EecCCcccccCHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEEEec
Q psy16174 79 IACDGIWDVMTNEEVSDFVRMRIGSG--MEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIVCFL 141 (157)
Q Consensus 79 laSDGlwd~ls~~~~~~~v~~~~~~~--~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv~~~ 141 (157)
-.+|.+-+.++..++.+.+.+..... .-++..|+.+.+..+..-.. .+-+++-+-+.+
T Consensus 41 ~~~D~l~~tidY~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~~-----v~~v~v~i~Kp~ 100 (116)
T TIGR00525 41 AESDDLGDTVNYAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFPQ-----VQRVKVRVSKPN 100 (116)
T ss_pred hccCCchhccCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCCC-----ceEEEEEEEeCC
Confidence 46899999999999999998877643 45788899999888876321 345555555443
No 29
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=45.60 E-value=1.2e+02 Score=22.19 Aligned_cols=66 Identities=12% Similarity=0.106 Sum_probs=41.6
Q ss_pred CCCeEEEEecCCcccccCHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEEEecC
Q psy16174 72 TDWEFLVIACDGIWDVMTNEEVSDFVRMRI----GSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIVCFLH 142 (157)
Q Consensus 72 ~~d~flilaSDGlwd~ls~~~~~~~v~~~~----~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv~~~~ 142 (157)
+++.++++-.||.-.......+...+...+ ....++..+.+.+-+....... ...-+|++++.++.
T Consensus 27 ~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~~~~~l~~~n~~l~~~~~-----~~~~~T~~~~~id~ 96 (193)
T smart00331 27 PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGISLSQILERLNRAIYENGE-----DGMFATLFLALYDF 96 (193)
T ss_pred CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCC-----CCcEEEEEEEEEEC
Confidence 445678889999998877766665554433 3334677777766555444422 14567888877754
No 30
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=44.46 E-value=46 Score=20.75 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=22.9
Q ss_pred cCHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16174 88 MTNEEVSDFVRMRIGSGMEPEEICEDLMTR 117 (157)
Q Consensus 88 ls~~~~~~~v~~~~~~~~~~~~~a~~Lv~~ 117 (157)
-|.++|..++.+. +.+|.++++.|+.+
T Consensus 19 hse~eIya~L~ec---nMDpnea~qrLL~q 45 (60)
T PF06972_consen 19 HSEEEIYAMLKEC---NMDPNEAVQRLLSQ 45 (60)
T ss_pred CCHHHHHHHHHHh---CCCHHHHHHHHHhc
Confidence 5788999988887 48999999999874
No 31
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=44.46 E-value=97 Score=22.18 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=26.5
Q ss_pred eeeeceEEEEEecCCCeEEEEecCCcccccCHHHHHHHHHH
Q psy16174 59 LTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRM 99 (157)
Q Consensus 59 vs~~Pdv~~~~l~~~d~flilaSDGlwd~ls~~~~~~~v~~ 99 (157)
..|.|.+...+++.+.--++--..|+|..++.++.-+...+
T Consensus 74 ~LP~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (157)
T PF14014_consen 74 TLPPPEILSVEIDEDSIKVYDEKGGWFNPITPEDQNEAQKE 114 (157)
T ss_pred ECCCcEEeeeecCccceEEEEccCCccCCCCHHHHHHHHHH
Confidence 34677777777764433344577888888887766555544
No 32
>PRK15322 invasion protein OrgB; Provisional
Probab=42.09 E-value=94 Score=24.29 Aligned_cols=48 Identities=10% Similarity=0.266 Sum_probs=36.7
Q ss_pred CCCeEEEEecCCcccccCHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHh
Q psy16174 72 TDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGME-PEEICEDLMTRCLA 120 (157)
Q Consensus 72 ~~d~flilaSDGlwd~ls~~~~~~~v~~~~~~~~~-~~~~a~~Lv~~A~~ 120 (157)
++..| ||+||---=.+|+++.++...+.+....+ ....|..|-+.|+.
T Consensus 146 d~~rF-V~~~g~qIaEFsPq~~v~~a~~~l~~~~d~~~~~~r~ls~~~l~ 194 (210)
T PRK15322 146 QEQRF-IMSCGDQIAEFSPEQFVETAVGVIKHHLDELPQDCRTISDNAIN 194 (210)
T ss_pred CCCce-EEEeCCchhccCHHHHHHHHHHHHHhCccchHHHHHHHhHHHHH
Confidence 44555 58998888889999999988777665544 77888888777765
No 33
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=38.97 E-value=1.2e+02 Score=20.45 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=42.9
Q ss_pred cCCcccccCHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEEEec
Q psy16174 81 CDGIWDVMTNEEVSDFVRMRIGSG--MEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIVCFL 141 (157)
Q Consensus 81 SDGlwd~ls~~~~~~~v~~~~~~~--~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv~~~ 141 (157)
+|-+-++++...+++.+.+..... ..++..|+.+.+..+..... .+.+++-+-+..
T Consensus 41 ~D~l~~tvdY~~l~~~i~~~~~~~~f~llE~la~~i~~~i~~~~~~-----v~~v~v~v~Kp~ 98 (113)
T PF02152_consen 41 SDDLDDTVDYAELAEAIRELVENSHFNLLETLAERIADRILKEFPQ-----VQSVTVKVRKPS 98 (113)
T ss_dssp HTTGGGSSHHHHHHHHHHHHHHSSEESSHHHHHHHHHHHHHHHTTT-----ESEEEEEEEETT
T ss_pred ccccccccCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhCCC-----ccEEEEEEECCc
Confidence 589999999999999998877653 67899999999999886431 455665555544
No 34
>PRK05457 heat shock protein HtpX; Provisional
Probab=37.22 E-value=74 Score=25.79 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.0
Q ss_pred eEEEEecCCcccccCHHHHHHHHHHHh
Q psy16174 75 EFLVIACDGIWDVMTNEEVSDFVRMRI 101 (157)
Q Consensus 75 ~flilaSDGlwd~ls~~~~~~~v~~~~ 101 (157)
.-+|+-|+|+++.++++|+..++...+
T Consensus 116 ~~~V~vt~gLl~~L~~~El~aVlAHEl 142 (284)
T PRK05457 116 NSLVAVSTGLLQNMSRDEVEAVLAHEI 142 (284)
T ss_pred CeEEEeehHHhhhCCHHHHHHHHHHHH
Confidence 457789999999999999998887654
No 35
>KOG0697|consensus
Probab=34.35 E-value=7.2 Score=32.16 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=28.1
Q ss_pred cccchhhhcCCChhhHHHHHHCCCEEecCCCCCC
Q psy16174 9 VLSSRKRRQGRNQPFRERTLSVQNNIRPGRESNP 42 (157)
Q Consensus 9 ~l~~e~~r~~~~~~E~~Ri~~~gg~i~~~R~~g~ 42 (157)
.+|.|+.||+.+++.. .|++.+|.+.++|++|.
T Consensus 167 ~~p~EkeRIqnAGGSV-MIqRvNGsLAVSRAlGD 199 (379)
T KOG0697|consen 167 YLPKEKERIQNAGGSV-MIQRVNGSLAVSRALGD 199 (379)
T ss_pred CChHHHHHHhcCCCeE-EEEEecceeeeehhccC
Confidence 5799999998877765 57888999999999984
No 36
>PRK03072 heat shock protein HtpX; Provisional
Probab=32.75 E-value=68 Score=26.03 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=21.7
Q ss_pred EEEEecCCcccccCHHHHHHHHHHHh
Q psy16174 76 FLVIACDGIWDVMTNEEVSDFVRMRI 101 (157)
Q Consensus 76 flilaSDGlwd~ls~~~~~~~v~~~~ 101 (157)
-+|..|||+.+.++.+|+..++...+
T Consensus 110 ~~v~vt~gLl~~l~~~El~aVlAHEl 135 (288)
T PRK03072 110 AAVCCTEGILQILNERELRGVLGHEL 135 (288)
T ss_pred cEEEecHHHHHhCCHHHHHHHHHHHH
Confidence 35678999999999999998887654
No 37
>PRK11245 folX D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=31.29 E-value=1.8e+02 Score=20.15 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=34.9
Q ss_pred EecCCcccccCHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhC
Q psy16174 79 IACDGIWDVMTNEEVSDFVRMRIGSG--MEPEEICEDLMTRCLAP 121 (157)
Q Consensus 79 laSDGlwd~ls~~~~~~~v~~~~~~~--~~~~~~a~~Lv~~A~~~ 121 (157)
-+||=|-+.++..++.+.+.+..... ..++.+|+.|.+..+..
T Consensus 46 ~~sDdl~~tidY~~v~~~i~~~v~~~~~~llE~la~~Ia~~i~~~ 90 (120)
T PRK11245 46 RTSDDIDDALNYRTITKNIIQHVENNRFSLLEKLTQDVLDIAREH 90 (120)
T ss_pred ccccCHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHcc
Confidence 67899999999999999998877643 46788999999876654
No 38
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=29.16 E-value=2.1e+02 Score=20.20 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=42.5
Q ss_pred EecCCcccccCHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEEEecC
Q psy16174 79 IACDGIWDVMTNEEVSDFVRMRIGSG--MEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIVCFLH 142 (157)
Q Consensus 79 laSDGlwd~ls~~~~~~~v~~~~~~~--~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv~~~~ 142 (157)
-.||=|-|+++..++.+.+.+.+.+. .-.+..|+.+.+..+.+- ..++.+=|.+.+
T Consensus 43 ~~~Ddl~dtl~Y~~v~~~i~~~v~~~~~~LiE~lA~~ia~~l~~~~--------~~v~~~~v~v~K 100 (121)
T COG1539 43 AESDDLADTLNYAEVSELIKEIVEGKRFALIETLAEEIADLLLARF--------PRVELVEVKVTK 100 (121)
T ss_pred cCccchhheecHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHhhC--------CccEEEEEEEEC
Confidence 57899999999999999999887764 346778888888877653 456666555543
No 39
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=29.03 E-value=76 Score=19.81 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=23.4
Q ss_pred ccccCHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16174 85 WDVMTNEEVSDFVRMRIGSGMEPEEICEDLMT 116 (157)
Q Consensus 85 wd~ls~~~~~~~v~~~~~~~~~~~~~a~~Lv~ 116 (157)
|=.++.+|+.+.|-+..+++..+..+--.|.+
T Consensus 25 W~~~~~~eVe~~I~klakkG~tpSqIG~iLRD 56 (60)
T PF08069_consen 25 WLKYSPEEVEELIVKLAKKGLTPSQIGVILRD 56 (60)
T ss_dssp T--S-HHHHHHHHHHHCCTTHCHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHcCCCHHHhhhhhhh
Confidence 66788999999999888888888877766654
No 40
>PRK02391 heat shock protein HtpX; Provisional
Probab=28.47 E-value=92 Score=25.44 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=21.8
Q ss_pred EEEEecCCcccccCHHHHHHHHHHHh
Q psy16174 76 FLVIACDGIWDVMTNEEVSDFVRMRI 101 (157)
Q Consensus 76 flilaSDGlwd~ls~~~~~~~v~~~~ 101 (157)
-+|+-|||+.+.++++|+..++...+
T Consensus 116 ~~V~vt~gLl~~L~~~El~aVlaHEl 141 (296)
T PRK02391 116 AVVCVTTGLMRRLDPDELEAVLAHEL 141 (296)
T ss_pred cEEEecHHHHhhCCHHHHHHHHHHHH
Confidence 45689999999999999988886654
No 41
>TIGR00526 folB_dom FolB domain. Two paralogous genes of E. coli, folB (dihydroneopterin aldolase) and folX (d-erythro-7,8-dihydroneopterin triphosphate epimerase) are homologous to each other and homo-octameric. In Pneumocystis carinii, a multifunctional enzyme of folate synthesis has an N-terminal region active as dihydroneopterin aldolase. This region consists of two tandem sequences each homologous to folB and forms tetramers.
Probab=28.45 E-value=2e+02 Score=19.71 Aligned_cols=57 Identities=9% Similarity=0.052 Sum_probs=41.7
Q ss_pred EecCCcccccCHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhCC-CCCCCCCCCCeeEEEEEec
Q psy16174 79 IACDGIWDVMTNEEVSDFVRMRIGSG--MEPEEICEDLMTRCLAPD-CQMGGLGCDNMTVVIVCFL 141 (157)
Q Consensus 79 laSDGlwd~ls~~~~~~~v~~~~~~~--~~~~~~a~~Lv~~A~~~~-~~~~~~~~DNiTvivv~~~ 141 (157)
-.+|-|-+.++..++.+.+.+.+... ..++.+|+.+.+..+..- . ..-++|-|-+.+
T Consensus 42 ~~~Ddl~~ti~Y~~l~~~i~~~~~~~~~~llE~la~~ia~~i~~~~~~------v~~v~v~v~Kp~ 101 (118)
T TIGR00526 42 ANSDDLSDSLNYAEIASNITKFVEENPFKLIETLAKSVSEVVLDDYQK------VTEVELEVSKPK 101 (118)
T ss_pred hccCCHHHccCHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhCCC------ceEEEEEEECCc
Confidence 35788999999999999998877643 467889999999888764 3 344555554443
No 42
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=27.89 E-value=39 Score=26.09 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=30.1
Q ss_pred ecCCCeEEEEecCCcccccCHHHH--HHHHHHHhcC---------------CCCHHHHHHHHHHHHHhCC
Q psy16174 70 LSTDWEFLVIACDGIWDVMTNEEV--SDFVRMRIGS---------------GMEPEEICEDLMTRCLAPD 122 (157)
Q Consensus 70 l~~~d~flilaSDGlwd~ls~~~~--~~~v~~~~~~---------------~~~~~~~a~~Lv~~A~~~~ 122 (157)
+...+.-+++|+||||=.+...-+ +.-+...... +.=+..+.++++..|.+.-
T Consensus 22 l~~~g~r~~~a~~G~~lev~r~wl~~~~~~~~~~~~~~PYg~~~~~~~~~~g~Ip~~l~~~ii~hAr~~~ 91 (192)
T TIGR03735 22 LEKPGHRFIVAADGVWREVRRPWLHAIQRVAPASPITVPYGAVEETLEFLCGPIPASLLEEFAEAARAAL 91 (192)
T ss_pred cccCCcEEEEecCcEEEEEecHHHHHHHHhcccccccccceeeeeeEEEecCCCCHHHHHHHHHHHHhcC
Confidence 444445566999999988765432 2222211100 2334667788888877644
No 43
>PRK02079 pyrroloquinoline quinone biosynthesis protein PqqD; Provisional
Probab=27.77 E-value=1.5e+02 Score=19.67 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=20.1
Q ss_pred CeeeeceEEEEEecCCCeEEEEecCCcccccCHHHHHHHHHHHh
Q psy16174 58 KLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRI 101 (157)
Q Consensus 58 ~vs~~Pdv~~~~l~~~d~flilaSDGlwd~ls~~~~~~~v~~~~ 101 (157)
+|.=.|+ ..+.+++...||.-.+|| .-|-+++++.+.+.+
T Consensus 23 ~vlL~PE-gmi~Lnetg~~Iw~~~DG---~~tv~eIi~~L~~~y 62 (88)
T PRK02079 23 HVLLYPE-GMIKLNESAGEILGLIDG---KRTVAAIIAELQQQF 62 (88)
T ss_pred eEEEcCC-eeeeechHHHHHHHHccC---CCCHHHHHHHHHHHc
Confidence 4444454 345555555555555555 224455555555443
No 44
>PF07394 DUF1501: Protein of unknown function (DUF1501); InterPro: IPR010869 This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.
Probab=26.93 E-value=1.6e+02 Score=24.58 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=35.2
Q ss_pred CCeEEEEecCCcccccCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCCCCCCCCeeEEEE
Q psy16174 73 DWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIV 138 (157)
Q Consensus 73 ~d~flilaSDGlwd~ls~~~~~~~v~~~~~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~DNiTvivv 138 (157)
+-.|+-+...| ||.=+++.-..- ..+ ..+..+...+++..-.++. -|+++|++.
T Consensus 245 g~~v~~V~~gG-wDTH~~~~~~~~--~ll---~~L~~alaaf~~dL~~~g~------~d~t~vv~~ 298 (392)
T PF07394_consen 245 GVRVVFVSLGG-WDTHSNQGNRHA--RLL---PELDQALAAFIQDLKERGL------LDDTLVVTM 298 (392)
T ss_pred CCEEEEECCCC-ccCccccHhHHH--HHH---HHHHHHHHHHHHHHHhcCC------cCceEEEEe
Confidence 45566667777 999887654321 111 3456677777777777777 788877765
No 45
>PRK04897 heat shock protein HtpX; Provisional
Probab=26.54 E-value=97 Score=25.23 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.1
Q ss_pred EEEEecCCcccccCHHHHHHHHHHHh
Q psy16174 76 FLVIACDGIWDVMTNEEVSDFVRMRI 101 (157)
Q Consensus 76 flilaSDGlwd~ls~~~~~~~v~~~~ 101 (157)
-.|+-|+|+.+.++.+|+..++...+
T Consensus 120 ~~v~vt~gLl~~l~~~El~aVlAHEl 145 (298)
T PRK04897 120 AAVAVTTGLLAIMNREELEGVIGHEI 145 (298)
T ss_pred cEEEeehHHHhhCCHHHHHHHHHHHH
Confidence 45789999999999999988887654
No 46
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=25.16 E-value=2.5e+02 Score=19.86 Aligned_cols=44 Identities=7% Similarity=0.038 Sum_probs=32.3
Q ss_pred CCeeeeceEEEEEecCCCeEEEEecCCccc-----ccCHHHHHHHHHHH
Q psy16174 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWD-----VMTNEEVSDFVRMR 100 (157)
Q Consensus 57 ~~vs~~Pdv~~~~l~~~d~flilaSDGlwd-----~ls~~~~~~~v~~~ 100 (157)
-+|...|.|...+......|-|.++.-.-+ .++.+++--++.+.
T Consensus 41 ~ivf~~p~V~~m~~~G~~tYqI~G~~~~~~~~~~~~i~~eDI~lV~eq~ 89 (116)
T TIGR00264 41 EWIFENPKVQVMDILGVKTYQITGKPKKEKVEEEEEITEDDIELVMKQC 89 (116)
T ss_pred eEEEecCeeEEEecCCcEEEEEecccEEeecccccCCCHHHHHHHHHHh
Confidence 478899999999988778888888877644 36767765444443
No 47
>PRK03001 M48 family peptidase; Provisional
Probab=24.89 E-value=99 Score=24.87 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.3
Q ss_pred EEEecCCcccccCHHHHHHHHHHHh
Q psy16174 77 LVIACDGIWDVMTNEEVSDFVRMRI 101 (157)
Q Consensus 77 lilaSDGlwd~ls~~~~~~~v~~~~ 101 (157)
.|.-|||+.+.++++|+..++...+
T Consensus 108 ~Ivvt~gLl~~l~~~El~aVlAHEl 132 (283)
T PRK03001 108 AVAATTGILRVLSEREIRGVMAHEL 132 (283)
T ss_pred EEEecHHHHhhCCHHHHHHHHHHHH
Confidence 4678999999999999998887654
No 48
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=24.21 E-value=44 Score=20.34 Aligned_cols=17 Identities=12% Similarity=-0.072 Sum_probs=12.9
Q ss_pred CChhhHHHHHHCCCEEe
Q psy16174 19 RNQPFRERTLSVQNNIR 35 (157)
Q Consensus 19 ~~~~E~~Ri~~~gg~i~ 35 (157)
++..|-.||.+.||.|.
T Consensus 35 ~ls~~~q~I~r~GGkIv 51 (56)
T PF01383_consen 35 QLSQEMQRINRQGGKIV 51 (56)
T ss_dssp HHHHHHHHHHHCT-EEE
T ss_pred HhHHHHHHHHHCCCEEE
Confidence 34678889999999984
No 49
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=24.15 E-value=2.4e+02 Score=23.68 Aligned_cols=60 Identities=23% Similarity=0.388 Sum_probs=36.6
Q ss_pred CeeeeceEEEEE-ec-CC---CeEEEEecCCc--ccc-cCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q psy16174 58 KLTALPDVTLRK-LS-TD---WEFLVIACDGI--WDV-MTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAP 121 (157)
Q Consensus 58 ~vs~~Pdv~~~~-l~-~~---d~flilaSDGl--wd~-ls~~~~~~~v~~~~~~~~~~~~~a~~Lv~~A~~~ 121 (157)
.++++|++.+|- .+ .. ..|-|..|||- |-. ++.++|-..+..+ ++...+-... +..|+..
T Consensus 9 ~~~s~p~~~yfL~~~W~~~~~~~F~i~lTDG~saW~g~vs~~ei~~~A~~~---~~~~~eYv~~-l~kaL~~ 76 (342)
T PF06632_consen 9 HISSEPDSIYFLQVSWEKDLGSGFDITLTDGQSAWSGTVSEEEIRQRAKDW---DMEVEEYVQE-LKKALTG 76 (342)
T ss_dssp EETTSCSSEEEEEEEESSSGGGEEEEEEESSSSEEEEEEEHHHHHHHHHHT---TS-HHHHHHH-HHHHHTS
T ss_pred ecCCCCCceEEEEEEeccCCCCceEEEEecCCCceeeecCHHHHHHHHHHh---cCCHHHHHHH-HHHHHhc
Confidence 456788887663 22 22 47999999997 655 6888888866655 1333333333 3445543
No 50
>PRK03982 heat shock protein HtpX; Provisional
Probab=23.32 E-value=1.5e+02 Score=23.94 Aligned_cols=25 Identities=16% Similarity=0.504 Sum_probs=21.0
Q ss_pred EEEecCCcccccCHHHHHHHHHHHh
Q psy16174 77 LVIACDGIWDVMTNEEVSDFVRMRI 101 (157)
Q Consensus 77 lilaSDGlwd~ls~~~~~~~v~~~~ 101 (157)
.|.-|||+.+.++++|+..++...+
T Consensus 109 ~V~vt~gLl~~l~~~El~AVlAHEl 133 (288)
T PRK03982 109 VVAVTEGILNLLNEDELEGVIAHEL 133 (288)
T ss_pred EEEeehHHHhhCCHHHHHHHHHHHH
Confidence 4578999999999999988887654
No 51
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=23.19 E-value=84 Score=26.09 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=17.1
Q ss_pred eEEEEEecCCCeEEEEecCCcccccCH
Q psy16174 64 DVTLRKLSTDWEFLVIACDGIWDVMTN 90 (157)
Q Consensus 64 dv~~~~l~~~d~flilaSDGlwd~ls~ 90 (157)
|-..+.+. +..|++|.||+|-.+=.
T Consensus 45 DAavI~v~--~~~lliaadGi~g~l~~ 69 (324)
T COG2144 45 DAAVIRVG--DGKLLIAADGIWGKLID 69 (324)
T ss_pred ceEEEeeC--CcEEEEecCCccccccc
Confidence 44455544 67899999999955433
No 52
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=23.09 E-value=1.1e+02 Score=23.70 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=18.5
Q ss_pred CeEEEEecCCcccccCHHHHHHHHHHH
Q psy16174 74 WEFLVIACDGIWDVMTNEEVSDFVRMR 100 (157)
Q Consensus 74 d~flilaSDGlwd~ls~~~~~~~v~~~ 100 (157)
...+|+-||| |+.-..+...+.+.+.
T Consensus 150 ~t~vvIiSDg-~~~~~~~~~~~~l~~l 175 (222)
T PF05762_consen 150 RTTVVIISDG-WDTNDPEPLAEELRRL 175 (222)
T ss_pred CcEEEEEecc-cccCChHHHHHHHHHH
Confidence 3468899999 6777777766666554
No 53
>PRK01345 heat shock protein HtpX; Provisional
Probab=21.40 E-value=1.6e+02 Score=24.32 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.4
Q ss_pred EEEecCCcccccCHHHHHHHHHHHh
Q psy16174 77 LVIACDGIWDVMTNEEVSDFVRMRI 101 (157)
Q Consensus 77 lilaSDGlwd~ls~~~~~~~v~~~~ 101 (157)
.|+-||||.+.++.+|+..++...+
T Consensus 108 ~V~vt~gLL~~L~~dEL~aVlAHEl 132 (317)
T PRK01345 108 AVAATTGLLQRLSPEEVAGVMAHEL 132 (317)
T ss_pred EEEechHHHhhCCHHHHHHHHHHHH
Confidence 5789999999999999988886654
Done!