RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16174
(157 letters)
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic
domain; The protein architecture and deduced catalytic
mechanism of PP2C phosphatases are similar to the PP1,
PP2A, PP2B family of protein Ser/Thr phosphatases, with
which PP2C shares no sequence similarity.
Length = 254
Score = 90.8 bits (226), Expect = 4e-23
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMT 116
P ++A PDVT+ KL+ D +FL++A DG+WDV++N+E D VR + +E ++L+
Sbjct: 178 PGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKED-LQEAAQELVD 236
Query: 117 RCLAPDCQMGGLGCDNMTVVIVCF 140
L DN+TVV+V
Sbjct: 237 LALRRG------SHDNITVVVVRL 254
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C,
catalytic domain. The protein architecture and deduced
catalytic mechanism of PP2C phosphatases are similar to
the PP1, PP2A, PP2B family of protein Ser/Thr
phosphatases, with which PP2C shares no sequence
similarity.
Length = 252
Score = 87.4 bits (217), Expect = 1e-21
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMT 116
P ++A PDVT+ +L+ +FL++A DG+WDV++N+EV D VR + +P+E + L+
Sbjct: 179 PYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHL--SKDPKEAAKRLID 236
Query: 117 RCLAPDCQMGGLGCDNMTVVIV 138
LA DN+TVV+V
Sbjct: 237 LALAR------GSKDNITVVVV 252
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C. Protein phosphatase 2C is
a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 252
Score = 82.0 bits (203), Expect = 1e-19
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 47 DKEGKETMRLPKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGME 106
D E K+ P ++A PDVT K++ EFL++A DG+WDV++++EV D VR + S
Sbjct: 174 DFELKKGKPQP-VSAEPDVTSHKITESDEFLILASDGLWDVLSDQEVVDIVRSEL-SDGS 231
Query: 107 PEEICEDLMTRCLAPDCQMGGLGCDNM 133
P E E L+ +A DN+
Sbjct: 232 PMEAAEKLVDEAIAYGS------EDNI 252
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional.
Length = 365
Score = 63.8 bits (155), Expect = 1e-12
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 59 LTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRC 118
L+A P++ +L+ + EFL+I CDGIWDV ++ DF R R+ +P ++L+
Sbjct: 254 LSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEA 313
Query: 119 LAPDCQMGGLGCDNMTVVIVCF 140
L DN+ VV+VCF
Sbjct: 314 LKRK------SGDNLAVVVVCF 329
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal
transduction mechanisms].
Length = 262
Score = 56.6 bits (137), Expect = 3e-10
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 61 ALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLA 120
PD+T +L +FL++ DG+WDV++++E+ D ++ + P+E + L+ L
Sbjct: 183 LEPDITELELEPG-DFLLLCSDGLWDVVSDDEIVDILK----NSETPQEAADKLIELALE 237
Query: 121 PDCQMGGLGCDNMTVVIVCFLHGNPYSSL 149
G G DN+TVV+V S
Sbjct: 238 ------GGGPDNITVVLVRLNGEGETSRD 260
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional.
Length = 381
Score = 37.1 bits (86), Expect = 0.002
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 58 KLTALPDVTLRKLSTDWEFLVIACDGIWD-VMTNEEVSDFVRMRIGSGMEPEEICEDL-M 115
K+ A+PDVT ++ +F+++ACDG+++ +NEEV FV+ E E C+DL +
Sbjct: 194 KVIAVPDVTHLTCQSN-DFIILACDGVFEGNFSNEEVVAFVK-------EQLETCDDLAV 245
Query: 116 TRCLAPDCQMGGLGCDNMTVVIVCFLHGNPYSSL 149
D + DN++ +IV G Y+ L
Sbjct: 246 VAGRVCDEAIRRGSKDNISCLIVQLKDGASYAKL 279
>gnl|CDD|234038 TIGR02865, spore_II_E, stage II sporulation protein E. Stage II
sporulation protein E (SpoIIE) is a multiple membrane
spanning protein with two separable functions. It plays
a role in the switch to polar cell division during
sporulation. By means of it protein phosphatase
activity, located in the C-terminal region, it activates
sigma-F. All proteins that score above the trusted
cutoff to this model are found in endospore-forming
Gram-positive bacteria. Surprisingly, a sequence from
the Cyanobacterium-like (and presumably
non-spore-forming) photosynthesizer Heliobacillus
mobilis is homologous, and scores between the trusted
and noise cutoffs [Cellular processes, Sporulation and
germination].
Length = 764
Score = 32.7 bits (75), Expect = 0.055
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 63 PDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGM---EPEEICEDLMTRCL 119
++ +KL + +V+ DG+ + E +R +PEEI E L+ +
Sbjct: 687 VELVRKKLKNG-DLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYLLEKAK 745
Query: 120 APDCQMGGLGCDNMTVVIV 138
G D+MTV++
Sbjct: 746 E---LRSGKIKDDMTVIVA 761
>gnl|CDD|232832 TIGR00116, tsf, translation elongation factor Ts. Translational
elongation factor Ts (EF-Ts) catalyzes the exchange of
GTP for the GDP of the EF-Tu.GDP complex as part of the
cycle of translation elongation. This protein is found
in Bacteria, mitochondria, and chloroplasts [Protein
synthesis, Translation factors].
Length = 291
Score = 27.4 bits (61), Expect = 3.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 90 NEEVSDFVRMRIGSGMEPEE 109
N +V++FVR +G G+E +
Sbjct: 260 NAKVTEFVRFEVGEGIEKKA 279
>gnl|CDD|215053 PLN00094, PLN00094, aconitate hydratase 2; Provisional.
Length = 938
Score = 27.2 bits (60), Expect = 5.1
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 86 DVMTNEEVSDFVRMRIGSGMEP-EEICEDLMTRCLAPDCQMGGLGCDNMT 134
DV+T+ + DF+R R G + P + + + R L PD G G D+ T
Sbjct: 516 DVVTHHTLPDFIRNRGGVSLRPGDGVIHSWLNRMLLPDTV--GTGGDSHT 563
>gnl|CDD|236491 PRK09377, tsf, elongation factor Ts; Provisional.
Length = 290
Score = 26.6 bits (60), Expect = 5.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 90 NEEVSDFVRMRIGSGMEPEE 109
+V FVR +G G+E +E
Sbjct: 259 GAKVVGFVRFEVGEGIEKKE 278
>gnl|CDD|181655 PRK09110, PRK09110, flagellar motor protein MotA; Validated.
Length = 283
Score = 26.7 bits (60), Expect = 5.9
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 87 VMTNEEVSDFV----RMRIGSGMEPEEICEDLM 115
++ + + DF+ R+ I M P EI E LM
Sbjct: 116 ILKDHHLVDFICDYLRLMISGNMNPHEI-EALM 147
>gnl|CDD|235135 PRK03592, PRK03592, haloalkane dehalogenase; Provisional.
Length = 295
Score = 26.1 bits (58), Expect = 7.9
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 138 VCFLHGNPYSS 148
+ FLHGNP SS
Sbjct: 30 IVFLHGNPTSS 40
>gnl|CDD|217376 pfam03122, Herpes_MCP, Herpes virus major capsid protein. This
family represents the major capsid protein (MCP) of
herpes viruses. The capsid shell consists of 150 MCP
hexamers and 12 MCP pentamers. One pentamer is found at
each of the 12 apices of the icosahedral shell, and the
hexamers form the edges and 20 faces.
Length = 1352
Score = 26.4 bits (59), Expect = 7.9
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 86 DVMTNEEVSDFVRMRIGSG 104
N EV DF+R +G+
Sbjct: 1108 HPYRNAEVDDFIRQAVGAE 1126
>gnl|CDD|234516 TIGR04236, seadorna_VP2, seadornavirus VP2 protein. This protein
family occurs in the seadornavirus virus group, with the
designation VP2 in Banna virus, Kadipiro virus, and Liao
ning virus.
Length = 953
Score = 26.4 bits (58), Expect = 8.5
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 18/103 (17%)
Query: 27 TLSVQNNIRPGRESNPGPSADKEGKETMRLPKLTALPDVTLRKLSTDWEFLVIACDGIWD 86
T + + + G E + A K+G+ L + T D
Sbjct: 60 TSKLADVVDQGPEPHNADGAVKDGRIAPVKLDLEKDKLDKAKLFET----------SPTD 109
Query: 87 VMT---NEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMG 126
+T N+EV D +R SG++ + + T+ A + Q G
Sbjct: 110 PLTVKNNQEVVDKLRAAQSSGIQ-----KVVPTKEFAVELQFG 147
>gnl|CDD|223342 COG0264, Tsf, Translation elongation factor Ts [Translation,
ribosomal structure and biogenesis].
Length = 296
Score = 26.1 bits (58), Expect = 9.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 90 NEEVSDFVRMRIGSGMEPEE 109
N +V++FVR +G G+E +E
Sbjct: 264 NAKVTEFVRFEVGEGIEKKE 283
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,729,968
Number of extensions: 672410
Number of successful extensions: 529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 20
Length of query: 157
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 68
Effective length of database: 6,990,096
Effective search space: 475326528
Effective search space used: 475326528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)