RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16174
(157 letters)
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase,
PSI-2, protein structure initiative; 1.82A {Homo
sapiens}
Length = 307
Score = 132 bits (333), Expect = 1e-38
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMT 116
++ P+V + + EF+++ACDGIWDVM+NEE+ ++V+ R+ + E +C ++
Sbjct: 220 QLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVD 279
Query: 117 RCLAPDCQMGGLGCDNMTVVIVCFLHGNPYS 147
CL DNM++V+VCF + +
Sbjct: 280 TCLHKGS------RDNMSIVLVCFSNEGHHH 304
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI,
protei structure initiative, NEW YORK SGX research
center for STRU genomics; 1.70A {Anopheles gambiae}
Length = 304
Score = 131 bits (331), Expect = 2e-38
Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRI-GSGMEPEEICEDLM 115
++ALPD+ + + EF+V+ACDGIW+ MT+E+V FV+ RI GM+ +ICE+L
Sbjct: 219 QMISALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFVQERINKPGMKLSKICEELF 278
Query: 116 TRCLAPDCQMGGLGCDNMTVVIVCF 140
CLAP + G GCDNMT +IV F
Sbjct: 279 DHCLAPHTRGDGTGCDNMTAIIVQF 303
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin,
hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1
d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Length = 382
Score = 125 bits (316), Expect = 2e-35
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 57 PKLTALPDVTLRKLST-DWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLM 115
++ P+V + S D +F+++ACDGIWDVM NEE+ DFVR R+ + E++C +++
Sbjct: 213 QLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVV 272
Query: 116 TRCLAPDCQMGGLGCDNMTVVIVCFLHGNPYSSLVNKC 153
CL DNM+V+++CF + S K
Sbjct: 273 DTCLYKGS------RDNMSVILICFPNAPKVSPEAVKK 304
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics,
protein structure initiative; 2.04A {Toxoplasma gondii}
Length = 324
Score = 119 bits (300), Expect = 1e-33
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 59 LTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRC 118
L+ PDV + +++ +++A DG+WDVM+ + + E + L+
Sbjct: 243 LSNQPDVRVVRVTPQHRVMILATDGLWDVMSAAQAVEIAMQAR---QEGRNPAQALVEMT 299
Query: 119 LAPDCQMGGLGCDNMTVVIVCFLHGN 144
LA DN+T + V F +
Sbjct: 300 LAEQQSRNQ-SADNITAMTVFFKKTD 324
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain,
PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C
protein phosphatase; HET: A8S; 1.80A {Arabidopsis
thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B*
Length = 337
Score = 113 bits (284), Expect = 3e-31
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 15/105 (14%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRI-------------GS 103
P + P+VT S + E L++A DG+WDVM N+EV + R RI
Sbjct: 233 PYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAER 292
Query: 104 GMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIVCFLHGNPYSS 148
G + C+ Q G DN++++++ + +
Sbjct: 293 GKGIDPACQAAADYLSMLALQKG--SKDNISIIVIDLKAQRKFKT 335
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein
structure initiative, NEW YORK structural research
consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Length = 377
Score = 108 bits (272), Expect = 3e-29
Identities = 10/99 (10%), Positives = 26/99 (26%), Gaps = 8/99 (8%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIG-SGMEPEEICEDLM 115
++A+PDVT + +V G + + S + + ++
Sbjct: 246 DLVSAVPDVTTFFAYPG-DDIVAGTAGAFAHFRSHAAIAAAIALYPVSPETVLDAAKAMV 304
Query: 116 TRCLAPDCQMGGLGCDNMTVVIVCFLHGNPYSSLVNKCA 154
N++ + S + +
Sbjct: 305 VNAKRRK------VTKNISTFVRHLPESRTRSQKMLEGT 337
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted
catalysis, dehydrogenase phosphatase, hydrolase; 2.38A
{Homo sapiens} PDB: 3qht_A 1l2n_A
Length = 389
Score = 108 bits (270), Expect = 7e-29
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 58 KLTALPDVTLRKLS-TDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMT 116
+ A P+ KL D FLV+ DGI ++ ++E+ DFV +P E +
Sbjct: 302 GVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVN----QCHDPNEAAHAVTE 357
Query: 117 RCLAPDCQMGGLGCDNMTVVIVCFLHGNPYSS 148
+ + DN T V+V F Y +
Sbjct: 358 QAIQYGT------EDNSTAVVVPFGAWGKYKN 383
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2,
protein structure initiative, NEW YORK SGX research
center for structural genomics; 2.25A {Homo sapiens}
Length = 274
Score = 104 bits (261), Expect = 3e-28
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 58 KLTALPDVTLRKLS-TDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMT 116
+ A P+ KL D FLV+ DGI ++ ++E+ DFV +P E +
Sbjct: 188 GVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVN----QCHDPNEAAHAVTE 243
Query: 117 RCLAPDCQMGGLGCDNMTVVIVCF 140
+ + DN T V+V F
Sbjct: 244 QAIQYGT------EDNSTAVVVPF 261
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling
pathway, cell membr hydrolase, magnesium, manganese,
metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis
thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Length = 316
Score = 101 bits (253), Expect = 9e-27
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 17/109 (15%)
Query: 57 PKLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMT 116
P + P+VT K + + L++A DG+WDVMT+EE + R RI + +
Sbjct: 204 PSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGGASL 263
Query: 117 RCLAPDCQMGGLGC-----------------DNMTVVIVCFLHGNPYSS 148
+ DN++VV+V S
Sbjct: 264 LADERRKEGKDPAAMSAAEYLSKLAIQRGSKDNISVVVVDLKPRRKLKS 312
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 100 bits (250), Expect = 5e-26
Identities = 16/120 (13%), Positives = 42/120 (35%), Gaps = 18/120 (15%)
Query: 47 DKEGKETMRLPKLTALPDV-TLRKLSTDWEFLVIACDGIWDVMT--------NEEVSDFV 97
D + + + A P++ + L FLV+ +G++ + N+E++ +
Sbjct: 254 DIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHGPGQANQEIAAMI 313
Query: 98 RMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGC---------DNMTVVIVCFLHGNPYSS 148
+ + + ++ R G ++MT+++ F + S
Sbjct: 314 DTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTLLVRNFGYPLGEMS 373
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium,
sulfate structural genomics, PSI-2, protein structure
initiative; 1.90A {Toxoplasma gondii}
Length = 364
Score = 96.3 bits (239), Expect = 1e-24
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 47 DKEGKETMRLP----KLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEE--VSDFVRMR 100
D + K LP K+ A+PDV + L++ACDG+++ + V D
Sbjct: 239 DSDFKMNPNLPPEEQKVIAVPDVRQFYA-LSSDLLLLACDGVYEPSGMDWAYVRDLTVAE 297
Query: 101 IG-SGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIVCFLHG 143
+ S + EE+ +M + DN++V++V F +
Sbjct: 298 MQRSKGDLEEVAARVMDYAYDMN------SQDNISVMLVAFHNQ 335
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting
protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles
gambiae}
Length = 358
Score = 93.5 bits (232), Expect = 1e-23
Identities = 13/119 (10%), Positives = 38/119 (31%), Gaps = 22/119 (18%)
Query: 46 ADKEGKETMRLPKLTALPDVTLR-KLSTDWEFLVIACDGIWDVM----------TNEEVS 94
D + + P++ +++ FLV+ G+ + N E+
Sbjct: 239 KDCNFLSSATAEPVIFEPEIVGGIQITPACRFLVLMSSGLCRALHEIFPGDASTGNRELV 298
Query: 95 DFVRMRIGSGMEPEEICEDLMTR--------CLAPDCQMGGLGC---DNMTVVIVCFLH 142
+ + + + ++ R + + + D++T++I F +
Sbjct: 299 RMISEEFQNQSTLGGVAQSVVHRIVQAHHDTYMQLVEEHRSVTFNSRDDVTLLIRNFNY 357
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate
dehydrogenase phosphatase 1, catalytic subunit, PDP1C,
hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Length = 467
Score = 74.8 bits (183), Expect = 1e-16
Identities = 24/115 (20%), Positives = 38/115 (33%)
Query: 24 RERTLSVQNNIRPGRESNPGPSADKEGKETMRLPKLTALPDVTLRKLSTDWEFLVIACDG 83
L + + N P LTA P+VT +L +FLV+A DG
Sbjct: 289 WSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDG 348
Query: 84 IWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIV 138
+W+ M ++V V + + I L + M+ V
Sbjct: 349 LWETMHRQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRAKMSSVFE 403
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling
protein; 2.65A {Streptococcus agalactiae}
Length = 250
Score = 36.5 bits (85), Expect = 0.001
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 63 PDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPD 122
PD+ + L ++LV+ DG+ ++++N +++ + ++ +DL+T
Sbjct: 179 PDLGVHLLEEG-DYLVVNSDGLTNMLSNADIATVLT----QEKTLDDKNQDLITLANH-- 231
Query: 123 CQMGGLGCDNMTVVIV 138
G G DN+TV +V
Sbjct: 232 ---RG-GLDNITVALV 243
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.002
Identities = 37/205 (18%), Positives = 60/205 (29%), Gaps = 67/205 (32%)
Query: 8 EVLSSRKRRQGRNQPFRER-TLSVQNNIRPGRESN--PGPSADKEGKETMRLPKLTALPD 64
E + + + P ++ +S+ N G ++ GP G L K A
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVN----GAKNLVVSGPPQSLYGLNL-TLRKAKAPSG 401
Query: 65 V-------TLRKLSTDWEFLVI-----------ACDGIWDVMTNEEVS------------ 94
+ + RKL FL + A D I + VS
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 95 --DFVRMRIGSGMEPEEICEDLMTRCL----APDCQ------MG-----GLGCDNMT--- 134
D +R+ SG E I + ++ + + G GLG +T
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG--VLTHRN 519
Query: 135 -------VVIVCFLHGNPYSSLVNK 152
V++ L NP K
Sbjct: 520 KDGTGVRVIVAGTLDINPDDDYGFK 544
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family
phosphatase, hydrolase; 1.28A {Synechococcus elongatus}
PDB: 2j86_A 2y09_A 2xzv_A
Length = 240
Score = 34.9 bits (81), Expect = 0.006
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 63 PDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPD 122
D+ L + L++ DG+ + +T++ +S ++ S ++ L+
Sbjct: 175 IDIQPIDLEPG-DRLLLCSDGLTEELTDDVISIYL-----SEPNVQKAAAALVDAAK--- 225
Query: 123 CQMGGLGCDNMTVVIV 138
GG DN+TVV++
Sbjct: 226 -THGGR--DNVTVVVI 238
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese,
phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A
2jft_A 2v06_A
Length = 234
Score = 34.5 bits (80), Expect = 0.007
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 63 PDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPD 122
PDV + L+I+ DG++ + D +P+ L+
Sbjct: 168 PDVFGIDCGPG-DRLLISSDGLFAAADEALIVDAAT-----SPDPQVAVRRLVEVAND-- 219
Query: 123 CQMGGLGCDNMTVVIV 138
G G DN TVV++
Sbjct: 220 ---AG-GSDNTTVVVI 231
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases,
PSTP/PPP, structural genomics, PSI, protein structure
initiative; 1.95A {Mycobacterium tuberculosis} SCOP:
d.219.1.1 PDB: 2cm1_A
Length = 237
Score = 34.5 bits (80), Expect = 0.007
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 63 PDVTLRKLSTDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPD 122
P +T+R+ + ++ DG+ D +++E + + +++ E E L+ L
Sbjct: 170 PTLTMREARAG-DRYLLCSDGLSDPVSDETILEALQIP-----EVAESAHRLIELALR-- 221
Query: 123 CQMGGLGCDNMTVVIV 138
GG G DN+TVV+
Sbjct: 222 ---GG-GPDNVTVVVA 233
>3rnr_A Stage II sporulation E family protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}
Length = 211
Score = 32.2 bits (74), Expect = 0.036
Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 77 LVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVV 136
+++ DG++ + + ++ + G + I +++ A Q DN T+
Sbjct: 160 VLVVSDGVYRSLHEDRIAMALS----RGSDARGILQEV----EA---QGRP-YQDNATLA 207
Query: 137 IV 138
+V
Sbjct: 208 LV 209
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.26
Identities = 21/138 (15%), Positives = 33/138 (23%), Gaps = 44/138 (31%)
Query: 11 SSRKRRQGRNQPFRERTLSVQ---NNIRPG-RESNPGP---------SADKEGKETMRLP 57
R R NQ F + +S +R E P S GK
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS----GK------ 163
Query: 58 KLTALPDVTLRKLSTDWEFLVIACDGI-WDVMTNEEVSDFVRMRIGSGMEPEEICEDLMT 116
T + ++ I W + + + PE + E L
Sbjct: 164 --TWVALDVCL----SYKVQCKMDFKIFW-------------LNLKNCNSPETVLEMLQK 204
Query: 117 RCLAPDCQMGGLGCDNMT 134
D D+ +
Sbjct: 205 LLYQIDPNWTSR-SDHSS 221
Score = 28.7 bits (63), Expect = 1.0
Identities = 28/202 (13%), Positives = 52/202 (25%), Gaps = 75/202 (37%)
Query: 3 DQTVSEVLSSRKRRQ----GRNQPFRER-TLSVQN---NIRPG---RES---NPG----- 43
+ V++ LS+ + S+ + RP RE NP
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 44 PSADKEGKET------MRLPKLTALPDVTLRKLSTD-----WEFLVIACDG--------- 83
+ ++G T + KLT + + +L L ++ L +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 84 -IWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLA-----------PDCQMGGLG-C 130
IW + + + L L P +
Sbjct: 394 LIWFDVIKSD--------------VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 131 DNMTVVIVCFLHGNPYSSLVNK 152
+N LH S+V+
Sbjct: 440 ENEYA-----LH----RSIVDH 452
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding,
glycoprotein, membrane, nucleotide-binding,
phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Length = 367
Score = 27.7 bits (62), Expect = 1.8
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 88 MTNEEVSDFVRMRIGSGMEPEEICED----LMTRC 118
+N+EV +FV G M+P + C +MT+C
Sbjct: 290 KSNQEVLEFVTS--GGRMDPPKNCPGPVYRIMTQC 322
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase;
HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A*
2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Length = 327
Score = 27.3 bits (61), Expect = 2.2
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 88 MTNEEVSDFVRMRIGSGMEPEEICED----LMTRC 118
+N+EV +FV G M+P + C +MT+C
Sbjct: 249 KSNQEVLEFVTS--GGRMDPPKNCPGPVYRIMTQC 281
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase
domain, hormone-growth factor complex; 1.50A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A*
1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A*
3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A*
1gag_A* 1irk_A 3bu3_A* ...
Length = 322
Score = 27.3 bits (61), Expect = 2.4
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 88 MTNEEVSDFVRMRIGSGMEPEEICED----LMTRC 118
++NE+V FV G ++ + C D LM C
Sbjct: 244 LSNEQVLRFVME--GGLLDKPDNCPDMLFELMRMC 276
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 27.2 bits (61), Expect = 2.8
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 88 MTNEEVSDFV----RMRIGSGMEPEEICEDLMTRC 118
++N++ +FV R+ P+ + LM +C
Sbjct: 319 LSNQQTREFVEKGGRLPCPELC-PDAVFR-LMEQC 351
>3eu6_A NS1, nonstructural protein 1; H5N1, cytoplasm, HOST-virus
interaction, interferon antiviral system evasion,
nucleus, RNA-binding; 2.70A {Influenza virus} PDB:
3f5t_A
Length = 215
Score = 26.9 bits (59), Expect = 2.8
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 22 PFRERTLSVQNNIRPGRESNPG---PSADKEGK------------ETMRLPKLTALPDVT 66
PF +R Q ++R GR + G +A + GK + +++P L D+T
Sbjct: 31 PFLDRLRRDQKSLR-GRGNTLGLDIETATRAGKQIVERILEGESDKALKMPASRYLTDMT 89
Query: 67 LRKLSTDWEFLV 78
L ++S DW L+
Sbjct: 90 LEEMSRDWFMLM 101
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor;
HET: V4Z; 2.75A {Homo sapiens}
Length = 329
Score = 26.9 bits (60), Expect = 3.6
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 88 MTNEEVSDFVRMRIGSGMEPEEIC----EDLMTRC 118
++N E D + G +E C +M C
Sbjct: 264 LSNTEAIDCITQ--GRELERPRACPPEVYAIMRGC 296
>3v5q_A NT-3 growth factor receptor; kinase domain, kinase,
phosphorylation, transferase-transfer inhibitor complex;
HET: 0F4; 2.20A {Homo sapiens}
Length = 297
Score = 26.4 bits (59), Expect = 4.1
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 88 MTNEEVSDFVRMRIGSGMEPEEICED----LMTRC 118
++N EV + + G +E +C +M C
Sbjct: 239 LSNTEVIECITQ--GRVLERPRVCPKEVYDVMLGC 271
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain,
transferase, transferase-transferase inhibito; HET: 07J;
2.80A {Homo sapiens}
Length = 382
Score = 26.6 bits (59), Expect = 4.4
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 88 MTNEEVSDFVRMRIGSGMEPEEICED----LMTRC 118
+ EE+ ++ G M+ C + +M C
Sbjct: 297 VPVEELFKLLKE--GHRMDKPSNCTNELYMMMRDC 329
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; HET: PTR ACP; 1.80A
{Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A*
2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A*
3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A*
3js2_A* 3ky2_A ...
Length = 334
Score = 26.5 bits (59), Expect = 4.4
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 88 MTNEEVSDFVRMRIGSGMEPEEICED----LMTRC 118
+ EE+ ++ G M+ C + +M C
Sbjct: 263 IPVEELFKLLKE--GHRMDKPANCTNELYMMMRDC 295
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation,
signal transduction, MASS spectrometry, transferase;
2.05A {Rattus norvegicus} SCOP: d.144.1.7
Length = 343
Score = 26.5 bits (59), Expect = 4.4
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 88 MTNEEVSDFVRMRIGSGMEPEEICED----LMTRC 118
M +EEV +VR G+ + E C LM C
Sbjct: 280 MAHEEVIYYVRD--GNILACPENCPLELYNLMRLC 312
>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase,
neurotrophic tyrosine kinase, receptor-related NTRKR2;
2.90A {Homo sapiens}
Length = 289
Score = 26.4 bits (59), Expect = 4.5
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 88 MTNEEVSDFVRMRIGSGMEPEEICED----LMTRC 118
+N++V + +R + + C LM C
Sbjct: 234 YSNQDVVEMIRN--RQVLPCPDDCPAWVYALMIEC 266
>4eq6_B Platinum sensitivity protein 3; DNA binding protein; 1.80A
{Saccharomyces cerevisiae} PDB: 4dt1_B
Length = 256
Score = 26.0 bits (56), Expect = 5.4
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 11/89 (12%)
Query: 58 KLTALPDVTLRKLSTDWEFLVIACDGIWDVMTNEEVS-------DFVRMR--IGSGMEPE 108
K + + + D + L+I IW + + + I
Sbjct: 66 KPSVALQKLVNCTTGDEKILIIDIVSIWSQQKQRQHGAIYMNSLSCINITGLIVFLELLY 125
Query: 109 EICEDLMTRCLAP--DCQMGGLGCDNMTV 135
+ D + RC + Q+ G+ DN++
Sbjct: 126 DSPMDALRRCQVDNFNFQLRGIVIDNLSF 154
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; 2.40A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1xr0_A
Length = 370
Score = 26.2 bits (58), Expect = 5.4
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 88 MTNEEVSDFVRMRIGSGMEPEEICED----LMTRC 118
+ EE+ ++ G M+ C + +M C
Sbjct: 309 IPVEELFKLLKE--GHRMDKPANCTNELYMMMRDC 341
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT;
protein-protein complex, translation; HET: MSE; 2.20A
{Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Length = 291
Score = 26.3 bits (58), Expect = 5.6
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 90 NEEVSDFVRMRIGSGMEPEE 109
V DFVR G G + +
Sbjct: 262 GVSVVDFVRFECGEGEDAAD 281
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 25.8 bits (56), Expect = 7.6
Identities = 4/64 (6%), Positives = 11/64 (17%), Gaps = 2/64 (3%)
Query: 11 SSRKRRQGRNQPFRERTLSVQNNIRPGRESNPGPSADKEGKETMRLPKLTALPDVTLRKL 70
+ F + + + ++ + LP R
Sbjct: 49 IDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAER-RILPK-PSRTS 106
Query: 71 STDW 74
Sbjct: 107 RQVQ 110
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET;
nucleotide-binding, hirschsprung disease,
phosphorylation, disease mutation; HET: ACK; 2.00A {Homo
sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A*
2ivv_A*
Length = 314
Score = 25.7 bits (57), Expect = 8.0
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 88 MTNEEVSDFVRMRIGSGMEPEEICED----LMTRC 118
+ E + + ++ G ME + C + LM +C
Sbjct: 256 IPPERLFNLLKT--GHRMERPDNCSEEMYRLMLQC 288
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 25.6 bits (57), Expect = 8.3
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 108 EEICEDLMTRCLAP 121
EE+ DL L P
Sbjct: 324 EELNADLFRGTLEP 337
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0462 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,373,368
Number of extensions: 134959
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 48
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)