RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16174
         (157 letters)



>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase
           2C, catalytic domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 295

 Score = 74.6 bits (182), Expect = 2e-17
 Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 7/79 (8%)

Query: 63  PDVTLRKLSTDW-EFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAP 121
           P+V   + S +  +F+++ACDGIWDVM NEE+ DFVR R+    + E++C +++  CL  
Sbjct: 218 PEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYK 277

Query: 122 DCQMGGLGCDNMTVVIVCF 140
                    DNM+V+++CF
Sbjct: 278 G------SRDNMSVILICF 290


>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase
           pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 235

 Score = 49.9 bits (118), Expect = 1e-08
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 72  TDWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCD 131
              +  ++  DG+ D +++E + + +++      E  E    L+   L       G G D
Sbjct: 176 RAGDRYLLCSDGLSDPVSDETILEALQIP-----EVAESAHRLIELALR------GGGPD 224

Query: 132 NMTVVIVCFLH 142
           N+TVV+    H
Sbjct: 225 NVTVVVADLEH 235


>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts),
           dimerisation domain {Escherichia coli [TaxId: 562]}
          Length = 143

 Score = 27.6 bits (61), Expect = 0.47
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 90  NEEVSDFVRMRIGSGMEPEE 109
           N EV+ F+R  +G G+E  E
Sbjct: 110 NAEVTGFIRFEVGEGIEKVE 129


>g2gac.1 d.153.1.5 (A:,B:) Glycosylasparaginase
           (aspartylglucosaminidase, AGA) {Flavobacterium
           meningosepticum [TaxId: 238]}
          Length = 275

 Score = 26.1 bits (57), Expect = 2.0
 Identities = 9/60 (15%), Positives = 20/60 (33%)

Query: 79  IACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLMTRCLAPDCQMGGLGCDNMTVVIV 138
               G  + +     +  V   +  G  P++ C++ + R +    + G    D     I 
Sbjct: 185 ATATGHGEEVIRTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIA 244


>d2af7a1 a.152.1.2 (A:1-119) Gamma-carboxymuconolactone
           decarboxylase, CMD {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 119

 Score = 24.8 bits (54), Expect = 3.2
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 73  DWEFLVIACDGIWDVMTNEEVSDFVRMRIGSGMEPEEICEDLM 115
             E L +A   +  +  ++++   VR  + +G   +EI E ++
Sbjct: 55  TRELLTLAA--LTVLRADDQLKSHVRGALNAGCSKDEIIEVMI 95


>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 317

 Score = 24.7 bits (53), Expect = 5.9
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 12/62 (19%)

Query: 71  STDWEFLVIACDGI------WDVMTNEEVSDFV----RMRIGSGMEPEEICEDLMTRCLA 120
           S  W + V   + +      +D +   E+S  +    R+        +     +M +C  
Sbjct: 194 SDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTID--VYMIMVKCWM 251

Query: 121 PD 122
            D
Sbjct: 252 ID 253


>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 277

 Score = 24.7 bits (53), Expect = 6.1
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 6/42 (14%)

Query: 85  WDVMTNEEVSDFV----RMRIGSGMEPEEICEDLMTRCLAPD 122
           +  M   EV+  +    RM   +G   E    DLM  C   D
Sbjct: 211 YRGMKGSEVTAMLEKGERMGCPAGCPRE--MYDLMNLCWTYD 250


>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 285

 Score = 24.7 bits (53), Expect = 6.6
 Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 6/42 (14%)

Query: 85  WDVMTNEEVSDFV----RMRIGSGMEPEEICEDLMTRCLAPD 122
           +  M   EV  F+    RM       PE     LM+ C    
Sbjct: 213 YKKMKGPEVMAFIEQGKRMECPPECPPE--LYALMSDCWIYK 252


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0553    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 587,209
Number of extensions: 26736
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 10
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.1 bits)