BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16178
         (73 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8N2M4|TM86A_HUMAN Lysoplasmalogenase-like protein TMEM86A OS=Homo sapiens
          GN=TMEM86A PE=2 SV=1
          Length = 240

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 36/52 (69%)

Query: 18 KSISSKLVPFINTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFVVLNGLG 69
          KS   KLVPF     VYF+L+LPS  PS  + LIKCLPI CL +F++ +GLG
Sbjct: 9  KSEGPKLVPFFKATCVYFVLWLPSSSPSWVSTLIKCLPIFCLWLFLLAHGLG 60


>sp|Q3MHQ7|TM86A_BOVIN Lysoplasmalogenase-like protein TMEM86A OS=Bos taurus GN=TMEM86A
          PE=2 SV=1
          Length = 240

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 36/52 (69%)

Query: 18 KSISSKLVPFINTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFVVLNGLG 69
          KS   KLVPF     VYF+L+LPS  PS  + LIKCLPI CL +F++ +GLG
Sbjct: 9  KSEGPKLVPFFKATCVYFVLWLPSSSPSWVSALIKCLPIFCLWLFLLAHGLG 60


>sp|Q9D8N3|TM86A_MOUSE Lysoplasmalogenase-like protein TMEM86A OS=Mus musculus
          GN=Tmem86a PE=2 SV=1
          Length = 241

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 35/51 (68%)

Query: 18 KSISSKLVPFINTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFVVLNGL 68
          KS   KLVPF     VYF+L+LPS  PS  + LIKCLPI CL +F++ +G+
Sbjct: 9  KSEGPKLVPFFKATCVYFVLWLPSSSPSWVSALIKCLPIFCLWLFLLAHGV 59


>sp|Q497J1|TM86B_MOUSE Lysoplasmalogenase OS=Mus musculus GN=Tmem86b PE=2 SV=1
          Length = 226

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 33/48 (68%)

Query: 16 HFKSISSKLVPFINTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFV 63
           +  +   L PFI   ++YF+L++P D+PS  + LIKC PI+CL+VF+
Sbjct: 17 QYPQVRRWLAPFILACSLYFLLWIPVDQPSWVSALIKCQPILCLVVFL 64


>sp|B0BNF0|TM86B_RAT Lysoplasmalogenase OS=Rattus norvegicus GN=Tmem86b PE=1 SV=1
          Length = 233

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 35/50 (70%)

Query: 14 LVHFKSISSKLVPFINTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFV 63
          L+ +  +   L PFI   ++YF+L++P D+PS  + L+KC PI+CL++F+
Sbjct: 22 LLKYPQVRRWLAPFIVACSLYFLLWIPEDQPSWVSALVKCQPILCLVLFL 71


>sp|F1RMN2|TM86B_PIG Lysoplasmalogenase OS=Sus scrofa GN=TMEM86B PE=3 SV=1
          Length = 226

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query: 24 LVPFINTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFV 63
          L PF  T AVYF+L++P D+PS    L+KCLP++ L+VF+
Sbjct: 25 LSPFFFTCAVYFLLWIPDDQPSWVGALVKCLPVLSLVVFL 64


>sp|Q8N661|TM86B_HUMAN Lysoplasmalogenase OS=Homo sapiens GN=TMEM86B PE=1 SV=2
          Length = 226

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/40 (52%), Positives = 29/40 (72%)

Query: 24 LVPFINTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFV 63
          L PFI +  VYF L++P D+ S FA L+KCLP++CL  F+
Sbjct: 25 LSPFILSCCVYFCLWIPEDQLSWFAALVKCLPVLCLAGFL 64


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.333    0.146    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,208,855
Number of Sequences: 539616
Number of extensions: 681850
Number of successful extensions: 1768
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1761
Number of HSP's gapped (non-prelim): 7
length of query: 73
length of database: 191,569,459
effective HSP length: 45
effective length of query: 28
effective length of database: 167,286,739
effective search space: 4684028692
effective search space used: 4684028692
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)