Query psy16178
Match_columns 73
No_of_seqs 53 out of 55
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 22:45:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4804|consensus 99.8 6.1E-20 1.3E-24 137.7 3.4 57 16-72 6-62 (243)
2 PHA03029 hypothetical protein; 72.4 7 0.00015 26.1 3.7 35 2-36 33-74 (92)
3 PF07947 YhhN: YhhN-like prote 69.0 7.1 0.00015 26.5 3.2 20 46-65 1-20 (185)
4 PF08285 DPM3: Dolichol-phosph 59.0 29 0.00062 22.6 4.5 42 22-63 6-49 (91)
5 COG5454 Predicted secreted pro 46.5 16 0.00034 24.5 1.8 13 26-38 2-14 (89)
6 COG5050 EPT1 sn-1,2-diacylglyc 42.8 46 0.00099 27.3 4.2 40 19-65 258-297 (384)
7 TIGR03753 blh_monoox beta-caro 42.6 61 0.0013 24.1 4.6 36 18-66 32-67 (259)
8 PF12279 DUF3619: Protein of u 42.2 60 0.0013 22.4 4.2 58 4-63 27-87 (131)
9 TIGR02588 conserved hypothetic 39.6 54 0.0012 22.8 3.7 29 43-71 2-30 (122)
10 PRK08387 putative monovalent c 39.2 44 0.00096 22.9 3.2 34 16-49 4-37 (131)
11 PRK12508 putative monovalent c 39.1 44 0.00096 23.0 3.2 35 16-50 6-40 (139)
12 TIGR00828 EIID-AGA PTS system, 37.5 32 0.0007 26.3 2.5 22 16-37 224-245 (271)
13 PF11297 DUF3098: Protein of u 36.8 11 0.00025 23.9 -0.0 22 44-65 38-60 (69)
14 PRK12505 putative monovalent c 36.3 53 0.0012 23.4 3.3 36 14-49 16-51 (159)
15 PF15461 BCD: Beta-carotene 15 31.8 1.1E+02 0.0023 22.7 4.4 35 18-65 30-64 (259)
16 PRK09855 PTS system N-acetylga 31.6 45 0.00098 25.4 2.5 23 15-37 214-236 (263)
17 PRK08944 motB flagellar motor 31.0 75 0.0016 24.3 3.6 29 40-69 11-39 (302)
18 PRK06281 putative monovalent c 30.8 67 0.0015 22.7 3.1 35 16-50 4-38 (154)
19 PRK08386 putative monovalent c 30.7 71 0.0015 22.2 3.2 35 16-50 6-40 (151)
20 PRK12574 putative monovalent c 30.7 69 0.0015 22.2 3.1 34 16-49 7-40 (141)
21 PF09323 DUF1980: Domain of un 30.6 1.1E+02 0.0023 21.2 4.0 46 17-62 24-90 (182)
22 PRK12509 putative monovalent c 30.2 72 0.0016 22.0 3.1 35 16-50 5-39 (137)
23 PHA02132 hypothetical protein 29.7 21 0.00044 23.7 0.3 16 55-70 15-30 (86)
24 PRK06742 flagellar motor prote 28.5 82 0.0018 22.8 3.3 29 40-69 6-34 (225)
25 PRK12573 putative monovalent c 26.5 91 0.002 21.6 3.1 35 16-50 7-41 (140)
26 PF10192 GpcrRhopsn4: Rhodopsi 26.0 1.9E+02 0.0041 20.9 4.8 39 7-63 194-232 (257)
27 PRK11103 PTS system mannose-sp 25.9 2.4E+02 0.0052 21.7 5.6 22 16-37 234-255 (282)
28 PF13239 2TM: 2TM domain 24.5 1.7E+02 0.0037 17.7 5.0 51 15-69 10-60 (83)
29 KOG2489|consensus 24.5 1.8E+02 0.0038 25.3 4.9 47 15-68 435-481 (592)
30 PF09842 DUF2069: Predicted me 24.4 2E+02 0.0044 18.9 4.4 30 32-61 16-46 (109)
31 PF15086 UPF0542: Uncharacteri 23.8 1.3E+02 0.0027 19.6 3.2 33 31-63 7-40 (74)
32 PRK06531 yajC preprotein trans 22.2 70 0.0015 21.7 1.8 19 23-41 5-23 (113)
33 PF07343 DUF1475: Protein of u 21.1 1.5E+02 0.0033 23.1 3.7 39 22-60 45-86 (254)
34 PRK09731 putative general secr 20.7 56 0.0012 23.7 1.2 20 23-42 42-61 (178)
No 1
>KOG4804|consensus
Probab=99.78 E-value=6.1e-20 Score=137.67 Aligned_cols=57 Identities=44% Similarity=0.727 Sum_probs=53.0
Q ss_pred hhHhhhhhhhhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy16178 16 HFKSISSKLVPFINTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFVVLNGLGLQP 72 (73)
Q Consensus 16 ~~k~~~~~LvPFf~t~alYF~L~~p~~~pS~~~allKCLPIl~L~~FV~~~G~sl~~ 72 (73)
+++..||||+||++++++||.+|+|+||+||+++++||+||+||++|++++|.++.+
T Consensus 6 qva~~gpKLvpFll~~~vYf~l~~~~dq~s~~~tl~KclPIf~Lv~fl~a~g~gl~~ 62 (243)
T KOG4804|consen 6 QVAKSGPKLVPFLLVACVYFQLWGPNDQYSWSYTLWKCLPIFCLVAFLYANGGGLGK 62 (243)
T ss_pred eeccCCCcccHHHHhhheeEEEecCCCchhHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 344479999999999999999999999999999999999999999999999998764
No 2
>PHA03029 hypothetical protein; Provisional
Probab=72.40 E-value=7 Score=26.13 Aligned_cols=35 Identities=40% Similarity=0.570 Sum_probs=24.4
Q ss_pred chHHHHHH-------hhhhhhhhHhhhhhhhhHHHHHHHHHh
Q psy16178 2 SLRALRAA-------RAKELVHFKSISSKLVPFINTVAVYFI 36 (73)
Q Consensus 2 ~~~~~~~~-------~~~~~~~~k~~~~~LvPFf~t~alYF~ 36 (73)
|.|-.|+| |.|.+--.-..--||+||-+..+.||.
T Consensus 33 si~k~raai~qnirsrrkg~ywflnf~fwllp~al~a~fyff 74 (92)
T PHA03029 33 SINKIRAAIDQNIRSRRKGLYWFLNFLFWLLPFALAAAFYFF 74 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555654 445555555567799999999999874
No 3
>PF07947 YhhN: YhhN-like protein; InterPro: IPR012506 The members of this family are similar to the hypothetical protein yhhN expressed by Escherichia coli (P37616 from SWISSPROT). Many of the members of this family are annotated as being possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. ; GO: 0016021 integral to membrane
Probab=69.01 E-value=7.1 Score=26.46 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16178 46 LFALLIKCLPIICLMVFVVL 65 (73)
Q Consensus 46 ~~~allKCLPIl~L~~FV~~ 65 (73)
|...+.|++|+++|+++++.
T Consensus 1 wl~~~~K~l~~~ll~~~~~~ 20 (185)
T PF07947_consen 1 WLRYIFKPLPMLLLLVYALL 20 (185)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999987
No 4
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=59.01 E-value=29 Score=22.61 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=30.3
Q ss_pred hhhhhHHHHHHHHHhhccCCC--CchHHHHHHHHHHHHHHHHHH
Q psy16178 22 SKLVPFINTVAVYFILFLPSD--EPSLFALLIKCLPIICLMVFV 63 (73)
Q Consensus 22 ~~LvPFf~t~alYF~L~~p~~--~pS~~~allKCLPIl~L~~FV 63 (73)
.+++-+....++|+.++...- ++....-++.-+|+..|+.|=
T Consensus 6 ~~l~~~~~l~~~w~~l~~~~~~~~~~~~~~ii~~lP~~~Lv~fG 49 (91)
T PF08285_consen 6 QWLSALLLLSALWLALLLGLLPLPPEPQQEIIPYLPFYALVSFG 49 (91)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCchhHHHHHHHhhHHHHHHHH
Confidence 456777777788888775222 235677888999999988875
No 5
>COG5454 Predicted secreted protein [Function unknown]
Probab=46.51 E-value=16 Score=24.51 Aligned_cols=13 Identities=31% Similarity=0.810 Sum_probs=10.3
Q ss_pred hHHHHHHHHHhhc
Q psy16178 26 PFINTVAVYFILF 38 (73)
Q Consensus 26 PFf~t~alYF~L~ 38 (73)
+++-..++||..|
T Consensus 2 s~~s~fAiyfiiW 14 (89)
T COG5454 2 SLFSWFAIYFIIW 14 (89)
T ss_pred cchHHHHHHHHHH
Confidence 4677788999877
No 6
>COG5050 EPT1 sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid metabolism]
Probab=42.84 E-value=46 Score=27.32 Aligned_cols=40 Identities=30% Similarity=0.494 Sum_probs=29.6
Q ss_pred hhhhhhhhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy16178 19 SISSKLVPFINTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFVVL 65 (73)
Q Consensus 19 ~~~~~LvPFf~t~alYF~L~~p~~~pS~~~allKCLPIl~L~~FV~~ 65 (73)
+....++|||..++.-|.++ .-||+|.+ +-+.++.+|..+
T Consensus 258 Sai~gllpFf~~~v~i~tl~--~~qp~fI~-----l~~il~~gf~~A 297 (384)
T COG5050 258 SAILGLLPFFAYFVSIFTLV--PTQPSFIT-----LALILLYGFIFA 297 (384)
T ss_pred HHHhhhHHHHHHHHHHHHHH--hcchHHHH-----HHHHHHhhhhhh
Confidence 45667999999999988888 77899987 334455555543
No 7
>TIGR03753 blh_monoox beta-carotene 15,15'-monooxygenase, Brp/Blh family. This integral membrane protein family includes Brp (bacterio-opsin related protein) and Blh (Brp-like protein). Bacteriorhodopsin is a light-driven proton pump with a covalently bound retinal cofactor that appears to be derived beta-carotene. Blh has been shown to cleave beta-carotene to product two all-trans retinal molecules. Mammalian enzymes with similar enzymatic function are not multiple membrane spanning proteins and are not homologous.
Probab=42.61 E-value=61 Score=24.07 Aligned_cols=36 Identities=17% Similarity=0.467 Sum_probs=26.4
Q ss_pred HhhhhhhhhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q psy16178 18 KSISSKLVPFINTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFVVLN 66 (73)
Q Consensus 18 k~~~~~LvPFf~t~alYF~L~~p~~~pS~~~allKCLPIl~L~~FV~~~ 66 (73)
+....-+.........|..+|. -.|+.+|+.|+...
T Consensus 32 ~~~~~f~~~Yl~l~~~~~~~w~-------------~~P~~aL~lFl~iS 67 (259)
T TIGR03753 32 RFFAKFLLLYLLLAGLVLALWL-------------VAPVAALLLFLAIS 67 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------------HhHHHHHHHHHHHH
Confidence 3444456667777777887774 68999999999664
No 8
>PF12279 DUF3619: Protein of unknown function (DUF3619); InterPro: IPR022064 This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
Probab=42.22 E-value=60 Score=22.36 Aligned_cols=58 Identities=24% Similarity=0.210 Sum_probs=34.5
Q ss_pred HHHHHHhhhhhhhhHhhhhh---hhhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHH
Q psy16178 4 RALRAARAKELVHFKSISSK---LVPFINTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFV 63 (73)
Q Consensus 4 ~~~~~~~~~~~~~~k~~~~~---LvPFf~t~alYF~L~~p~~~pS~~~allKCLPIl~L~~FV 63 (73)
.-||+||..-+...|-..+- .+|=......=-.++ .+..+|+..+-+.+|++.|++-+
T Consensus 27 ~RL~aAR~~ALa~~k~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~r~~~~~pl~aLv~gL 87 (131)
T PF12279_consen 27 ERLAAARRQALARKKPEAPVATVQAPGLALAGSGGALF--GRGGSWWRRLGLALPLLALVAGL 87 (131)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchhccccCcccc--cCCccHHHHHHHHHHHHHHHHHH
Confidence 34788888777776655431 122111000000011 56799999999999999988443
No 9
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=39.64 E-value=54 Score=22.84 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=25.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy16178 43 EPSLFALLIKCLPIICLMVFVVLNGLGLQ 71 (73)
Q Consensus 43 ~pS~~~allKCLPIl~L~~FV~~~G~sl~ 71 (73)
-++|++..+-|+=.+++++++...+++-.
T Consensus 2 ~~EWvt~~Is~~ill~viglv~y~~l~~~ 30 (122)
T TIGR02588 2 LAEWVTFGISTLILAAMFGLVAYDWLRYS 30 (122)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhccC
Confidence 37899999999999999999988887744
No 10
>PRK08387 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=39.23 E-value=44 Score=22.86 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=26.5
Q ss_pred hhHhhhhhhhhHHHHHHHHHhhccCCCCchHHHH
Q psy16178 16 HFKSISSKLVPFINTVAVYFILFLPSDEPSLFAL 49 (73)
Q Consensus 16 ~~k~~~~~LvPFf~t~alYF~L~~p~~~pS~~~a 49 (73)
..|...+.+.||+...++|..+....+|.-=+.+
T Consensus 4 il~~~~r~l~p~i~l~s~yl~l~GH~~PGGGF~g 37 (131)
T PRK08387 4 VVRTTTKLVAPFLVTYAAYLMLYGHLSPGGGFQA 37 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHH
Confidence 3567788899999999999998887777543333
No 11
>PRK12508 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=39.11 E-value=44 Score=23.04 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=27.4
Q ss_pred hhHhhhhhhhhHHHHHHHHHhhccCCCCchHHHHH
Q psy16178 16 HFKSISSKLVPFINTVAVYFILFLPSDEPSLFALL 50 (73)
Q Consensus 16 ~~k~~~~~LvPFf~t~alYF~L~~p~~~pS~~~al 50 (73)
..|...+.++|+....++|..+-..+++.-=+.+.
T Consensus 6 il~~~~r~l~P~i~l~s~yll~~GH~~PGGGFqgG 40 (139)
T PRK12508 6 ILRTITKLMIPVIILFGLYVQFHGDYGPGGGFQAG 40 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHH
Confidence 45778899999999999999877777775544444
No 12
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=37.50 E-value=32 Score=26.26 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.0
Q ss_pred hhHhhhhhhhhHHHHHHHHHhh
Q psy16178 16 HFKSISSKLVPFINTVAVYFIL 37 (73)
Q Consensus 16 ~~k~~~~~LvPFf~t~alYF~L 37 (73)
..+.+.|.|+|+.++..+|+.+
T Consensus 224 ilD~I~P~llPl~~~~~~y~ll 245 (271)
T TIGR00828 224 ILDQLMPGLLPLGLTLLMYWLL 245 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHH
Confidence 6788899999999999999965
No 13
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=36.78 E-value=11 Score=23.85 Aligned_cols=22 Identities=36% Similarity=0.846 Sum_probs=17.9
Q ss_pred chHHHHH-HHHHHHHHHHHHHHH
Q psy16178 44 PSLFALL-IKCLPIICLMVFVVL 65 (73)
Q Consensus 44 pS~~~al-lKCLPIl~L~~FV~~ 65 (73)
|+..+.. ++-.|++++.+|++.
T Consensus 38 ~~Ifs~~rI~vAPiv~~~Gf~~~ 60 (69)
T PF11297_consen 38 PDIFSFRRITVAPIVVLIGFVII 60 (69)
T ss_pred ccccceeeEEehhHHHHHHHHHH
Confidence 5666665 889999999999964
No 14
>PRK12505 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=36.31 E-value=53 Score=23.43 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=27.5
Q ss_pred hhhhHhhhhhhhhHHHHHHHHHhhccCCCCchHHHH
Q psy16178 14 LVHFKSISSKLVPFINTVAVYFILFLPSDEPSLFAL 49 (73)
Q Consensus 14 ~~~~k~~~~~LvPFf~t~alYF~L~~p~~~pS~~~a 49 (73)
=...+...+.++||++..++|..+-...++.-=+.+
T Consensus 16 s~Il~t~~r~l~P~illfs~ylll~Gh~~PGGGFqg 51 (159)
T PRK12505 16 STIIMTTVRVVAPFVFTFGLFVMFHGADSPGGGFQG 51 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHH
Confidence 355777899999999999999987776666543333
No 15
>PF15461 BCD: Beta-carotene 15,15'-dioxygenase
Probab=31.80 E-value=1.1e+02 Score=22.72 Aligned_cols=35 Identities=20% Similarity=0.584 Sum_probs=25.4
Q ss_pred HhhhhhhhhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy16178 18 KSISSKLVPFINTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFVVL 65 (73)
Q Consensus 18 k~~~~~LvPFf~t~alYF~L~~p~~~pS~~~allKCLPIl~L~~FV~~ 65 (73)
+....-+.-.......|..+|. -.|.++|+.|+..
T Consensus 30 ~~~~~f~~~Yl~~~~~~~~~w~-------------~~P~~aL~lFl~i 64 (259)
T PF15461_consen 30 RSFARFLALYLLLAALVLLLWF-------------VAPVLALLLFLLI 64 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------------HhHHHHHHHHHHH
Confidence 3344455666667777777774 7899999999965
No 16
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=31.61 E-value=45 Score=25.37 Aligned_cols=23 Identities=22% Similarity=0.584 Sum_probs=20.5
Q ss_pred hhhHhhhhhhhhHHHHHHHHHhh
Q psy16178 15 VHFKSISSKLVPFINTVAVYFIL 37 (73)
Q Consensus 15 ~~~k~~~~~LvPFf~t~alYF~L 37 (73)
+..+.+-|.|+|+..+..+|+.+
T Consensus 214 ~ilD~I~P~lLPl~~~~~~y~ll 236 (263)
T PRK09855 214 DFFDKVFPNILPMAYTLLMYYFL 236 (263)
T ss_pred HHHHHHhhchHHHHHHHHHHHHH
Confidence 47888999999999999999875
No 17
>PRK08944 motB flagellar motor protein MotB; Reviewed
Probab=30.97 E-value=75 Score=24.28 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=21.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16178 40 PSDEPSLFALLIKCLPIICLMVFVVLNGLG 69 (73)
Q Consensus 40 p~~~pS~~~allKCLPIl~L~~FV~~~G~s 69 (73)
|+.-|-|+.+.--.+ .|.+++||++.-||
T Consensus 11 ~~g~~~Wm~TfADlm-TLLm~FFVlL~S~S 39 (302)
T PRK08944 11 PPGAPAWLATFADLM-SLLMCFFVLLLSFS 39 (302)
T ss_pred CCCchhHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 345578888886554 67789999997777
No 18
>PRK06281 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=30.77 E-value=67 Score=22.68 Aligned_cols=35 Identities=20% Similarity=0.027 Sum_probs=27.6
Q ss_pred hhHhhhhhhhhHHHHHHHHHhhccCCCCchHHHHH
Q psy16178 16 HFKSISSKLVPFINTVAVYFILFLPSDEPSLFALL 50 (73)
Q Consensus 16 ~~k~~~~~LvPFf~t~alYF~L~~p~~~pS~~~al 50 (73)
..|.+.+-++||+....+|..+-...+|.-=+.+.
T Consensus 4 Il~t~~~~l~p~i~lfgiyv~l~GH~sPGGGFqGG 38 (154)
T PRK06281 4 ILKIIALPIAIFIMCLGIMTILGGHITPGGGFQGG 38 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCccHHHH
Confidence 46778889999999999999998877775444443
No 19
>PRK08386 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=30.71 E-value=71 Score=22.25 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=26.9
Q ss_pred hhHhhhhhhhhHHHHHHHHHhhccCCCCchHHHHH
Q psy16178 16 HFKSISSKLVPFINTVAVYFILFLPSDEPSLFALL 50 (73)
Q Consensus 16 ~~k~~~~~LvPFf~t~alYF~L~~p~~~pS~~~al 50 (73)
..|...+.++|+....++|..+....+|.-=+.+.
T Consensus 6 il~~~~r~l~p~i~l~s~yl~l~GH~~PGGGF~gG 40 (151)
T PRK08386 6 IVKTAARAIIPLIGIFGAYIVLHGHLTPGGGFQGG 40 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCchHHHH
Confidence 35678889999999999999888777775444333
No 20
>PRK12574 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=30.69 E-value=69 Score=22.17 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=26.3
Q ss_pred hhHhhhhhhhhHHHHHHHHHhhccCCCCchHHHH
Q psy16178 16 HFKSISSKLVPFINTVAVYFILFLPSDEPSLFAL 49 (73)
Q Consensus 16 ~~k~~~~~LvPFf~t~alYF~L~~p~~~pS~~~a 49 (73)
..|.+.+.+.||+...++|..+-...++.-=+.+
T Consensus 7 il~~~~r~l~p~i~l~s~ylll~GH~~PGGGF~g 40 (141)
T PRK12574 7 VLKTVTKIVVFILLTFGFYLFLAGHNNPGGGFIG 40 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCccHHH
Confidence 3566788899999999999988887777543333
No 21
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=30.62 E-value=1.1e+02 Score=21.24 Aligned_cols=46 Identities=17% Similarity=0.495 Sum_probs=30.7
Q ss_pred hHhhhhhhhhHHHHHHHHHh---------hccCCCC------------chHHHHHHHHHHHHHHHHH
Q psy16178 17 FKSISSKLVPFINTVAVYFI---------LFLPSDE------------PSLFALLIKCLPIICLMVF 62 (73)
Q Consensus 17 ~k~~~~~LvPFf~t~alYF~---------L~~p~~~------------pS~~~allKCLPIl~L~~F 62 (73)
.+++-|+..||...+++-+. ++.+... +.++...+=++|++...++
T Consensus 24 ~~YI~P~~~~~~~~a~i~l~ilai~q~~~~~~~~~~~~~~h~h~~~~~~~~~~y~l~~iPll~g~l~ 90 (182)
T PF09323_consen 24 LLYIHPRYIPLLYFAAILLLILAIVQLWRWFRPKRRKEDCHDHGHSKSKKLWSYFLFLIPLLIGFLF 90 (182)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHcC
Confidence 45667777777665544443 3455555 6788888889999876553
No 22
>PRK12509 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=30.20 E-value=72 Score=22.04 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=27.0
Q ss_pred hhHhhhhhhhhHHHHHHHHHhhccCCCCchHHHHH
Q psy16178 16 HFKSISSKLVPFINTVAVYFILFLPSDEPSLFALL 50 (73)
Q Consensus 16 ~~k~~~~~LvPFf~t~alYF~L~~p~~~pS~~~al 50 (73)
..|.+.+.+.||....++|..+-...++.-=+.+.
T Consensus 5 il~~~~r~l~p~i~~~s~yl~~~GH~~PGGGF~gG 39 (137)
T PRK12509 5 ILATASRFLLPLLLLFSVFLLLRGHNEPGGGFIGG 39 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCccHHHH
Confidence 46778889999999999999888777775433333
No 23
>PHA02132 hypothetical protein
Probab=29.66 E-value=21 Score=23.67 Aligned_cols=16 Identities=38% Similarity=0.912 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhcCC
Q psy16178 55 PIICLMVFVVLNGLGL 70 (73)
Q Consensus 55 PIl~L~~FV~~~G~sl 70 (73)
-++.+++||+.||+.+
T Consensus 15 s~ia~~vyvl~hg~af 30 (86)
T PHA02132 15 SIIAVMVYVLIHGFAF 30 (86)
T ss_pred HHHHHHHHHHHhhHHH
Confidence 4678999999999864
No 24
>PRK06742 flagellar motor protein MotS; Reviewed
Probab=28.54 E-value=82 Score=22.81 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=21.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16178 40 PSDEPSLFALLIKCLPIICLMVFVVLNGLG 69 (73)
Q Consensus 40 p~~~pS~~~allKCLPIl~L~~FV~~~G~s 69 (73)
|+..|.|+.+.--. =.|.|++||++.-+|
T Consensus 6 ~~~~~~Wl~TyaDm-~TLLL~FFVlL~s~S 34 (225)
T PRK06742 6 QKGSPRWMTTFTDL-TMLLLTFFVLLVATS 34 (225)
T ss_pred CCCCcchhhhHHHH-HHHHHHHHHHHHHHh
Confidence 56668888887544 467899999987776
No 25
>PRK12573 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=26.47 E-value=91 Score=21.55 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=27.4
Q ss_pred hhHhhhhhhhhHHHHHHHHHhhccCCCCchHHHHH
Q psy16178 16 HFKSISSKLVPFINTVAVYFILFLPSDEPSLFALL 50 (73)
Q Consensus 16 ~~k~~~~~LvPFf~t~alYF~L~~p~~~pS~~~al 50 (73)
..|.+.+.++||....++|..+-...++.-=+.+.
T Consensus 7 ilr~~~r~l~p~i~l~s~yv~l~GH~~PGGGF~gG 41 (140)
T PRK12573 7 ILRTVAKIVTFIILLFSVFLFLAGHNEPGGGFIGG 41 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCccHHHH
Confidence 45778888999999999999888877775444443
No 26
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=25.96 E-value=1.9e+02 Score=20.92 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=22.6
Q ss_pred HHHhhhhhhhhHhhhhhhhhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHH
Q psy16178 7 RAARAKELVHFKSISSKLVPFINTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFV 63 (73)
Q Consensus 7 ~~~~~~~~~~~k~~~~~LvPFf~t~alYF~L~~p~~~pS~~~allKCLPIl~L~~FV 63 (73)
+..+.+|-+..|... ..+|...+.+||. |.|++.++...
T Consensus 194 ~~t~~~~~~~~k~~F--y~~f~~~~~lWFl----------------~~Pv~~~ia~~ 232 (257)
T PF10192_consen 194 YQTISKEKDPEKRKF--YLPFGIIFSLWFL----------------SLPVIVIIAHF 232 (257)
T ss_pred HHHHHHhcCHHHHHH--HHHHHHHHHHHHH----------------HHHHHHHHHHh
Confidence 344444444444333 6677777767765 88887766543
No 27
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=25.94 E-value=2.4e+02 Score=21.73 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.8
Q ss_pred hhHhhhhhhhhHHHHHHHHHhh
Q psy16178 16 HFKSISSKLVPFINTVAVYFIL 37 (73)
Q Consensus 16 ~~k~~~~~LvPFf~t~alYF~L 37 (73)
..+.+-|.|+|+..+..+|+.+
T Consensus 234 ~LD~I~P~lLPl~~~~~~y~ll 255 (282)
T PRK11103 234 ILDQLMPGLVPLLLTFACMWLL 255 (282)
T ss_pred HHHHHhhhhHHHHHHHHHHHHH
Confidence 6788899999999999999875
No 28
>PF13239 2TM: 2TM domain
Probab=24.51 E-value=1.7e+02 Score=17.70 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=32.6
Q ss_pred hhhHhhhhhhhhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16178 15 VHFKSISSKLVPFINTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFVVLNGLG 69 (73)
Q Consensus 15 ~~~k~~~~~LvPFf~t~alYF~L~~p~~~pS~~~allKCLPIl~L~~FV~~~G~s 69 (73)
+.-|..-..+.-|.+.+++.+.++.-.++...+.. -|++...+.+..||++
T Consensus 10 ~~~k~fy~Hl~~y~ivn~~l~~in~~~~~~~~W~~----~~~~~Wgi~L~~h~~~ 60 (83)
T PF13239_consen 10 KRRKGFYRHLAVYLIVNSFLIFINLFTGPGYFWPL----WPILGWGIGLAIHALK 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHH----HHHHHHHHHHHHHHHH
Confidence 33445556778888888877776654444432332 3777777777888876
No 29
>KOG2489|consensus
Probab=24.50 E-value=1.8e+02 Score=25.29 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=38.3
Q ss_pred hhhHhhhhhhhhHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhc
Q psy16178 15 VHFKSISSKLVPFINTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFVVLNGL 68 (73)
Q Consensus 15 ~~~k~~~~~LvPFf~t~alYF~L~~p~~~pS~~~allKCLPIl~L~~FV~~~G~ 68 (73)
+.+|+.+--|.|-.+.-++|=+++ .+.-||.+=++.. |..+|++-||
T Consensus 435 ~A~kYLs~~L~PL~vg~aVYSLlY--~~hKsWYSWvLn~-----l~~~vy~FGF 481 (592)
T KOG2489|consen 435 QAMKYLSYLLFPLLVGGAVYSLLY--VEHKSWYSWVLNS-----LYNGVYAFGF 481 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh--cccccHHHHHHHH-----HHhHHHHHHH
Confidence 458999999999999999999998 6678898888664 5667766665
No 30
>PF09842 DUF2069: Predicted membrane protein (DUF2069); InterPro: IPR018643 This family of prokaryotic proteins has no known function but is thought to be a membrane protein.
Probab=24.35 E-value=2e+02 Score=18.86 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=18.5
Q ss_pred HHHHhhccCCCCchHHHHH-HHHHHHHHHHH
Q psy16178 32 AVYFILFLPSDEPSLFALL-IKCLPIICLMV 61 (73)
Q Consensus 32 alYF~L~~p~~~pS~~~al-lKCLPIl~L~~ 61 (73)
........|++..++...+ +|.+|.+...-
T Consensus 16 ~~w~~~~~p~~~~~~~~~l~l~~lPLLl~l~ 46 (109)
T PF09842_consen 16 LLWELWLAPPELRPGGSWLALKLLPLLLPLP 46 (109)
T ss_pred HHHHHHhCCcccCcHHHHHHHHHHHHHHHHH
Confidence 3444334455555666665 99999876543
No 31
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=23.81 E-value=1.3e+02 Score=19.59 Aligned_cols=33 Identities=15% Similarity=0.379 Sum_probs=21.6
Q ss_pred HHHHHhhccCCCCchHHHHHHHHH-HHHHHHHHH
Q psy16178 31 VAVYFILFLPSDEPSLFALLIKCL-PIICLMVFV 63 (73)
Q Consensus 31 ~alYF~L~~p~~~pS~~~allKCL-PIl~L~~FV 63 (73)
-+-|.++|.-.|+-+.+++++=|| |.+.+.+|+
T Consensus 7 w~~~~v~~vAkdP~~Fl~~vll~LtPlfiisa~l 40 (74)
T PF15086_consen 7 WASYIVEWVAKDPYEFLTTVLLILTPLFIISAVL 40 (74)
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHhHHHHHHHHH
Confidence 345677888788888888776666 444444443
No 32
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=22.19 E-value=70 Score=21.66 Aligned_cols=19 Identities=11% Similarity=0.357 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHHhhccCC
Q psy16178 23 KLVPFINTVAVYFILFLPS 41 (73)
Q Consensus 23 ~LvPFf~t~alYF~L~~p~ 41 (73)
-++||.+.+++||.+++|.
T Consensus 5 ~il~~vv~~~i~yf~iRPQ 23 (113)
T PRK06531 5 TIIMFVVMLGLIFFMQRQQ 23 (113)
T ss_pred HHHHHHHHHHHHHheechH
Confidence 3567777776666567664
No 33
>PF07343 DUF1475: Protein of unknown function (DUF1475); InterPro: IPR009943 This family consists of several hypothetical plant proteins of around 250 residues in length. Members of this family seem to be found exclusively in Arabidopsis thaliana. The function of this family is unknown.
Probab=21.06 E-value=1.5e+02 Score=23.12 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=27.9
Q ss_pred hhhhhHHHHHHHHH---hhccCCCCchHHHHHHHHHHHHHHH
Q psy16178 22 SKLVPFINTVAVYF---ILFLPSDEPSLFALLIKCLPIICLM 60 (73)
Q Consensus 22 ~~LvPFf~t~alYF---~L~~p~~~pS~~~allKCLPIl~L~ 60 (73)
||.+-+.+=.-++| ..|+-..+++|.++++=.+|++||.
T Consensus 45 PWm~aTL~DfYin~v~~A~WI~ykE~nwlssi~Wivll~~lG 86 (254)
T PF07343_consen 45 PWMVATLIDFYINFVAIAAWIAYKESNWLSSIFWIVLLICLG 86 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhh
Confidence 55555444444443 3578899999999999999988874
No 34
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=20.72 E-value=56 Score=23.67 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHHHhhccCCC
Q psy16178 23 KLVPFINTVAVYFILFLPSD 42 (73)
Q Consensus 23 ~LvPFf~t~alYF~L~~p~~ 42 (73)
.+.=+++.+++|+.+|.|-.
T Consensus 42 ~~g~vL~l~i~Y~~iWqPl~ 61 (178)
T PRK09731 42 AAVVFLFSVGYYVLIWQPLS 61 (178)
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 35667888999999998753
Done!