Query psy16178
Match_columns 73
No_of_seqs 53 out of 55
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 22:45:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rdd_B UPF0092 membrane protei 48.3 6.6 0.00022 20.7 1.0 18 24-41 6-24 (37)
2 1yyb_A Programmed cell death p 36.6 16 0.00055 18.3 1.3 15 2-16 6-20 (27)
3 1q90_G Cytochrome B6F complex 12.9 2E+02 0.0068 15.7 3.5 24 43-66 3-26 (37)
4 1vf5_G Protein PET G; photosyn 9.4 1.8E+02 0.006 15.9 1.8 23 44-66 4-26 (37)
5 2ju0_B Phosphatidylinositol 4- 6.2 3.4E+02 0.012 15.4 2.1 13 53-65 36-48 (52)
6 2jxn_A Uncharacterized protein 5.9 2E+02 0.0068 18.8 1.1 14 3-16 5-18 (127)
7 2a1j_A DNA repair endonuclease 5.8 1.6E+02 0.0054 16.3 0.5 16 2-17 26-41 (63)
8 2e1f_A Werner syndrome ATP-dep 5.6 2.5E+02 0.0085 17.2 1.3 15 3-17 21-35 (103)
9 4b0t_A PUP--protein ligase; pu 5.6 2.4E+02 0.0083 22.6 1.6 17 19-35 143-159 (493)
10 1zoq_C CREB-binding protein, i 5.3 2.7E+02 0.0093 15.8 1.3 12 41-52 27-38 (47)
No 1
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=48.31 E-value=6.6 Score=20.70 Aligned_cols=18 Identities=17% Similarity=0.587 Sum_probs=12.1
Q ss_pred hhhHHHH-HHHHHhhccCC
Q psy16178 24 LVPFINT-VAVYFILFLPS 41 (73)
Q Consensus 24 LvPFf~t-~alYF~L~~p~ 41 (73)
++|+.+- ++.||.+++|.
T Consensus 6 ~l~~v~~~~ifYFl~iRPQ 24 (37)
T 2rdd_B 6 ILMLVVFGLIFYFMILRPQ 24 (37)
T ss_dssp HHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhH
Confidence 5666655 55689888763
No 2
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=36.59 E-value=16 Score=18.32 Aligned_cols=15 Identities=47% Similarity=0.519 Sum_probs=11.9
Q ss_pred chHHHHHHhhhhhhh
Q psy16178 2 SLRALRAARAKELVH 16 (73)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (73)
+|.+||++|-.|++.
T Consensus 6 ELeair~~rl~~lq~ 20 (27)
T 1yyb_A 6 ELEALRRQRLAELQA 20 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 478899999888853
No 3
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=12.89 E-value=2e+02 Score=15.68 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=19.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Q psy16178 43 EPSLFALLIKCLPIICLMVFVVLN 66 (73)
Q Consensus 43 ~pS~~~allKCLPIl~L~~FV~~~ 66 (73)
+|-+...++-+.||-....||-++
T Consensus 3 E~lL~GIVlGlipvtlaGLfv~Ay 26 (37)
T 1q90_G 3 EPLLCGIVLGLVPVTIAGLFVTAY 26 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHhhHHHHHHHHHHHHH
Confidence 466777889999999999999653
No 4
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=9.40 E-value=1.8e+02 Score=15.89 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q psy16178 44 PSLFALLIKCLPIICLMVFVVLN 66 (73)
Q Consensus 44 pS~~~allKCLPIl~L~~FV~~~ 66 (73)
|-+...++-+.||-..-.||-++
T Consensus 4 plL~GIVlGlipvtl~GLfv~Ay 26 (37)
T 1vf5_G 4 PLLDGLVLGLVFATLGGLFYAAY 26 (37)
T ss_dssp -----CHHHHHHHHHHHHTHHHH
T ss_pred hhhhhHHHhhHHHHHHHHHHHHH
Confidence 45566778899999999998653
No 5
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=6.19 E-value=3.4e+02 Score=15.43 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q psy16178 53 CLPIICLMVFVVL 65 (73)
Q Consensus 53 CLPIl~L~~FV~~ 65 (73)
-+|.+.|+++|+.
T Consensus 36 v~PalVL~s~v~s 48 (52)
T 2ju0_B 36 VAPALVLSSMIMS 48 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 4788888888865
No 6
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=5.87 E-value=2e+02 Score=18.85 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=11.2
Q ss_pred hHHHHHHhhhhhhh
Q psy16178 3 LRALRAARAKELVH 16 (73)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (73)
|.++|++|-.||+.
T Consensus 5 LeaIR~~Rl~ELq~ 18 (127)
T 2jxn_A 5 LQCIRECRLAQLKN 18 (127)
T ss_dssp HHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHH
Confidence 67889998888864
No 7
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=5.85 E-value=1.6e+02 Score=16.33 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=12.6
Q ss_pred chHHHHHHhhhhhhhh
Q psy16178 2 SLRALRAARAKELVHF 17 (73)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (73)
|+++++.|-..||+.+
T Consensus 26 s~~~i~~As~eeL~~v 41 (63)
T 2a1j_A 26 NIAELAALSQDELTSI 41 (63)
T ss_dssp SHHHHHTCCHHHHHHH
T ss_pred CHHHHHHCCHHHHHHH
Confidence 6778888888888776
No 8
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=5.62 E-value=2.5e+02 Score=17.15 Aligned_cols=15 Identities=20% Similarity=0.091 Sum_probs=9.0
Q ss_pred hHHHHHHhhhhhhhh
Q psy16178 3 LRALRAARAKELVHF 17 (73)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (73)
||++|...|++.++.
T Consensus 21 L~~wR~~~A~~~~vP 35 (103)
T 2e1f_A 21 LVEARQKHANKMDVP 35 (103)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHcCCC
Confidence 566666666665543
No 9
>4b0t_A PUP--protein ligase; pupylation, depupylation, prokaryotic ubiquitin-like protein, proteasome; HET: ADP; 2.16A {Corynebacterium glutamicum}
Probab=5.58 E-value=2.4e+02 Score=22.57 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=12.4
Q ss_pred hhhhhhhhHHHHHHHHH
Q psy16178 19 SISSKLVPFINTVAVYF 35 (73)
Q Consensus 19 ~~~~~LvPFf~t~alYF 35 (73)
.+..-|+|||+|=-+|.
T Consensus 143 ~l~~~L~PFlVtRqi~~ 159 (493)
T 4b0t_A 143 ALGKRLMPFLITRQLIC 159 (493)
T ss_dssp HHHHTHHHHHHHHHHHH
T ss_pred HHHHhhhhHHhhhheee
Confidence 34567999999876654
No 10
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=5.34 E-value=2.7e+02 Score=15.83 Aligned_cols=12 Identities=42% Similarity=0.703 Sum_probs=7.9
Q ss_pred CCCchHHHHHHH
Q psy16178 41 SDEPSLFALLIK 52 (73)
Q Consensus 41 ~~~pS~~~allK 52 (73)
-++|-+++|++|
T Consensus 27 ksnPqLMAAfIk 38 (47)
T 1zoq_C 27 KSNPQLMAAFIK 38 (47)
T ss_dssp HTCHHHHHHHHH
T ss_pred HcCHHHHHHHHH
Confidence 356677777766
Done!