Query psy16178
Match_columns 73
No_of_seqs 53 out of 55
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 22:45:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16178.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16178hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oedc_ f.36.1.1 (C:) Acetylch 19.1 33 0.0024 21.0 2.3 36 28-65 14-49 (260)
2 d1oqek_ g.24.1.2 (K:) Tumor ne 15.3 25 0.0018 17.3 0.8 9 36-44 22-30 (31)
3 d1kfta_ a.60.2.3 (A:) Excinucl 14.9 17 0.0012 19.0 0.0 23 2-24 24-46 (56)
4 d1miwa1 a.173.1.1 (A:140-404) 8.6 59 0.0043 19.4 1.1 7 4-10 18-24 (265)
5 d1oeda_ f.36.1.1 (A:) Acetylch 8.6 1.3E+02 0.0094 18.1 2.8 35 28-64 14-48 (227)
6 d2bgwa1 a.60.2.5 (A:160-229) D 8.5 29 0.0021 18.3 -0.4 23 2-24 35-57 (70)
7 d1oedb_ f.36.1.1 (B:) Acetylch 8.4 1.6E+02 0.012 17.6 3.3 36 28-65 14-49 (250)
8 d2p6va1 a.277.1.1 (A:582-678) 6.2 80 0.0059 18.8 0.8 13 21-33 68-80 (97)
9 d2a1jb1 a.60.2.5 (B:219-296) D 6.1 36 0.0026 18.3 -0.8 22 2-23 41-62 (78)
10 d1w98b1 a.74.1.1 (B:228-357) G 5.8 1.4E+02 0.01 18.4 1.9 26 5-31 71-96 (130)
No 1
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=19.15 E-value=33 Score=21.05 Aligned_cols=36 Identities=17% Similarity=0.419 Sum_probs=22.7
Q ss_pred HHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy16178 28 INTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFVVL 65 (73)
Q Consensus 28 f~t~alYF~L~~p~~~pS~~~allKCLPIl~L~~FV~~ 65 (73)
++++.-....|+|.|.++-++-.+-. +|++.+|.+.
T Consensus 14 ~~~~l~~~~f~lp~~~~~r~~l~it~--lLs~~vf~~~ 49 (260)
T d1oedc_ 14 LISFLASLAFYLPAESGEKMSTAISV--LLAQAVFLLL 49 (260)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHeeeCCCCCCcEEeeHHH--HHHHHHHHHH
Confidence 44455566677788878777666555 3666666544
No 2
>d1oqek_ g.24.1.2 (K:) Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.27 E-value=25 Score=17.33 Aligned_cols=9 Identities=33% Similarity=0.659 Sum_probs=7.1
Q ss_pred hhccCCCCc
Q psy16178 36 ILFLPSDEP 44 (73)
Q Consensus 36 ~L~~p~~~p 44 (73)
+||+|++.|
T Consensus 22 ll~tp~p~p 30 (31)
T d1oqek_ 22 LLRTPRPKP 30 (31)
T ss_dssp GSCCCCSCC
T ss_pred hccCCCCCC
Confidence 489888877
No 3
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.86 E-value=17 Score=18.97 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=18.3
Q ss_pred chHHHHHHhhhhhhhhHhhhhhh
Q psy16178 2 SLRALRAARAKELVHFKSISSKL 24 (73)
Q Consensus 2 ~~~~~~~~~~~~~~~~k~~~~~L 24 (73)
|+.+++.|...||..+.-+|+++
T Consensus 24 s~~~i~~As~eeL~~v~GIg~~~ 46 (56)
T d1kfta_ 24 GLQGLRNASVEEIAKVPGISQGL 46 (56)
T ss_dssp CHHHHHHCCHHHHTTSSSTTSHH
T ss_pred CHHHHHHhhHHHHHhcCCCCHHH
Confidence 56788888889998887777764
No 4
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.60 E-value=59 Score=19.38 Aligned_cols=7 Identities=57% Similarity=0.890 Sum_probs=2.9
Q ss_pred HHHHHHh
Q psy16178 4 RALRAAR 10 (73)
Q Consensus 4 ~~~~~~~ 10 (73)
|.|||.|
T Consensus 18 RiLRa~R 24 (265)
T d1miwa1 18 RMMRAVR 24 (265)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 5
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=8.57 E-value=1.3e+02 Score=18.08 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=20.4
Q ss_pred HHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHH
Q psy16178 28 INTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFVV 64 (73)
Q Consensus 28 f~t~alYF~L~~p~~~pS~~~allKCLPIl~L~~FV~ 64 (73)
++++.-.+..|+|.|.++-++-.+ -=+|++.+|..
T Consensus 14 li~~ls~~~F~lp~~s~eRi~l~i--t~lL~~~v~~~ 48 (227)
T d1oeda_ 14 LFSFLTGLVFYLPTDSGEKMTLSI--SVLLSLTVFLL 48 (227)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHheecCCCCccEEeeH--HHHHHHHHHHH
Confidence 344455666777888787655543 33455555543
No 6
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=8.52 E-value=29 Score=18.34 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=16.3
Q ss_pred chHHHHHHhhhhhhhhHhhhhhh
Q psy16178 2 SLRALRAARAKELVHFKSISSKL 24 (73)
Q Consensus 2 ~~~~~~~~~~~~~~~~k~~~~~L 24 (73)
|+.++..|..+||..++-+|+..
T Consensus 35 s~~~l~~As~eeL~~v~GIG~~~ 57 (70)
T d2bgwa1 35 SLERFFTASKAEISKVEGIGEKR 57 (70)
T ss_dssp SHHHHTTCCHHHHHHSTTCCHHH
T ss_pred CHHHHHHcCHHHHHcCCCCCHHH
Confidence 45667777778888877777653
No 7
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=8.35 E-value=1.6e+02 Score=17.61 Aligned_cols=36 Identities=22% Similarity=0.581 Sum_probs=22.6
Q ss_pred HHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy16178 28 INTVAVYFILFLPSDEPSLFALLIKCLPIICLMVFVVL 65 (73)
Q Consensus 28 f~t~alYF~L~~p~~~pS~~~allKCLPIl~L~~FV~~ 65 (73)
++++.-.+..|+|.|.++-++-.+-. +|++.+|.+.
T Consensus 14 ~i~~l~~~~f~~p~~~~er~~l~it~--lL~~~~~~~~ 49 (250)
T d1oedb_ 14 LISILAILVFYLPPDAGEKMSLSISA--LLAVTVFLLL 49 (250)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHheecCCCCCcEEeeHHH--HHHHHHHHHH
Confidence 45555667778888888877655433 4555555543
No 8
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.18 E-value=80 Score=18.78 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=10.6
Q ss_pred hhhhhhHHHHHHH
Q psy16178 21 SSKLVPFINTVAV 33 (73)
Q Consensus 21 ~~~LvPFf~t~al 33 (73)
.|.|+||++...-
T Consensus 68 qP~lvPFLK~sLp 80 (97)
T d2p6va1 68 QPYLVPFLKRSLP 80 (97)
T ss_dssp CTTHHHHHHHHHH
T ss_pred CchhHHHHHHhhH
Confidence 7899999997643
No 9
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.14 E-value=36 Score=18.34 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=14.9
Q ss_pred chHHHHHHhhhhhhhhHhhhhh
Q psy16178 2 SLRALRAARAKELVHFKSISSK 23 (73)
Q Consensus 2 ~~~~~~~~~~~~~~~~k~~~~~ 23 (73)
|+..++.|..+||..+.-+|..
T Consensus 41 s~~~i~~A~~eeL~~i~GiG~~ 62 (78)
T d2a1jb1 41 SLEQLIAASREDLALCPGLGPQ 62 (78)
T ss_dssp SHHHHHSCCHHHHHTSSSCCSH
T ss_pred CcHHHHhhhHHHHHHhhhhhHH
Confidence 4566777777787776666554
No 10
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.83 E-value=1.4e+02 Score=18.36 Aligned_cols=26 Identities=12% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhHhhhhhhhhHHHHH
Q psy16178 5 ALRAARAKELVHFKSISSKLVPFINTV 31 (73)
Q Consensus 5 ~~~~~~~~~~~~~k~~~~~LvPFf~t~ 31 (73)
|+|.-.-+.-+...| ..|+.||+.++
T Consensus 71 ~~kvSGl~w~~l~~C-v~WM~PF~~vi 96 (130)
T d1w98b1 71 MQKVSGYQWCDIENC-VKWMVPFAMVI 96 (130)
T ss_dssp HHHHSCCCHHHHHHH-HHHHHHHHHHH
T ss_pred HHHccCccHHHHHHH-HHHHHHHHHHH
Done!