BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16179
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P58374|RL30_BRABE 60S ribosomal protein L30 OS=Branchiostoma belcheri GN=RPL30 PE=3
SV=1
Length = 114
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 52/56 (92%), Positives = 55/56 (98%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSE 144
RKSEIEYYAMLAKTGVHHY+GNNIELGTACGKYFRVCTL+ITD GDSDIIRSMP+E
Sbjct: 53 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYFRVCTLAITDPGDSDIIRSMPAE 108
>sp|P67884|RL30_OPHHA 60S ribosomal protein L30 OS=Ophiophagus hannah GN=RPL30 PE=3 SV=2
Length = 115
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/56 (87%), Positives = 53/56 (94%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSE 144
RKSEIEYYAMLAKTGVHHY+GNNIELGTACGKY+RVCTL+I D GDSDIIRSMP +
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQ 111
>sp|P67883|RL30_CHICK 60S ribosomal protein L30 OS=Gallus gallus GN=RPL30 PE=3 SV=2
Length = 115
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/56 (87%), Positives = 53/56 (94%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSE 144
RKSEIEYYAMLAKTGVHHY+GNNIELGTACGKY+RVCTL+I D GDSDIIRSMP +
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQ 111
>sp|P62890|RL30_RAT 60S ribosomal protein L30 OS=Rattus norvegicus GN=Rpl30 PE=3 SV=2
Length = 115
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/56 (87%), Positives = 53/56 (94%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSE 144
RKSEIEYYAMLAKTGVHHY+GNNIELGTACGKY+RVCTL+I D GDSDIIRSMP +
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQ 111
>sp|P62889|RL30_MOUSE 60S ribosomal protein L30 OS=Mus musculus GN=Rpl30 PE=2 SV=2
Length = 115
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/56 (87%), Positives = 53/56 (94%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSE 144
RKSEIEYYAMLAKTGVHHY+GNNIELGTACGKY+RVCTL+I D GDSDIIRSMP +
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQ 111
>sp|Q76KA2|RL30_MACFA 60S ribosomal protein L30 OS=Macaca fascicularis GN=RPL30 PE=3 SV=3
Length = 115
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/56 (87%), Positives = 53/56 (94%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSE 144
RKSEIEYYAMLAKTGVHHY+GNNIELGTACGKY+RVCTL+I D GDSDIIRSMP +
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQ 111
>sp|P62888|RL30_HUMAN 60S ribosomal protein L30 OS=Homo sapiens GN=RPL30 PE=1 SV=2
Length = 115
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/56 (87%), Positives = 53/56 (94%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSE 144
RKSEIEYYAMLAKTGVHHY+GNNIELGTACGKY+RVCTL+I D GDSDIIRSMP +
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQ 111
>sp|Q3T0D5|RL30_BOVIN 60S ribosomal protein L30 OS=Bos taurus GN=RPL30 PE=3 SV=3
Length = 115
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/56 (87%), Positives = 53/56 (94%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSE 144
RKSEIEYYAMLAKTGVHHY+GNNIELGTACGKY+RVCTL+I D GDSDIIRSMP +
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQ 111
>sp|P58372|RL30_ICTPU 60S ribosomal protein L30 OS=Ictalurus punctatus GN=rpl30 PE=3 SV=2
Length = 116
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 53/57 (92%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSEH 145
RKSEIEYYAML+KTGVHHY+GNNIELGTACGKY+RVCTL+I D GDSDIIRSMP +
Sbjct: 56 RKSEIEYYAMLSKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPDQQ 112
>sp|Q9M5M6|RL30_EUPES 60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1
Length = 112
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 47/57 (82%), Positives = 52/57 (91%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSEH 145
RKSEIEYYAMLAK GVHHY GNN++LGTACGKYFRVC LSI DAGDSDII+S+P +H
Sbjct: 56 RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGDH 112
>sp|P58375|RL30_SPOFR 60S ribosomal protein L30 OS=Spodoptera frugiperda GN=RpL30 PE=3
SV=1
Length = 113
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/57 (80%), Positives = 52/57 (91%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSEH 145
RKSEIEYYA+LAKTGVHHY+GNNIELGTACGKY+RVCTL+ITD GDSDII ++P
Sbjct: 56 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPESQ 112
>sp|O49884|RL30_LUPLU 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1
Length = 112
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 50/57 (87%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSEH 145
RKSEIEYYAMLAK GVHHY GNN++LGTACGKY+RVC LSI D GDSDII+++P +
Sbjct: 56 RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGDQ 112
>sp|Q8VZ19|RL302_ARATH 60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=3
SV=1
Length = 112
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 49/57 (85%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSEH 145
R+SEIEYYAMLAK GVHHY GNN++LGTACGKYFRV LSI D GDSDII+S+P +
Sbjct: 56 RRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGDQ 112
>sp|O48558|RL30_MAIZE 60S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=3 SV=1
Length = 112
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 48/57 (84%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSEH 145
RKSEIEYYAMLAK VHH+ GNN++LGTACGKYFRVC LSI D GDSDII++ P E
Sbjct: 56 RKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTTPGEQ 112
>sp|Q9C8F7|RL301_ARATH Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana
GN=RPL30A PE=3 SV=1
Length = 112
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 48/57 (84%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSEH 145
R+SEIEYYAMLAK GVHHY NN++LGTACGKYFRV LSI D GDSDII+S+P +
Sbjct: 56 RRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGDQ 112
>sp|Q9LSA3|RL303_ARATH 60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=3
SV=1
Length = 112
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 48/57 (84%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSEH 145
R+SEIEYYAMLAK GVH Y GNN++LGTACGKYFRV LSI D GDSDII+++P +
Sbjct: 56 RRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGDQ 112
>sp|Q9SDG6|RL30_ORYSJ 60S ribosomal protein L30 OS=Oryza sativa subsp. japonica GN=RPL30
PE=3 SV=1
Length = 111
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/56 (73%), Positives = 47/56 (83%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSE 144
RKSEIEYYAMLAK VHH+ GNN++LGTACGKYFRVC LSI D GDSDII++ +
Sbjct: 56 RKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTTGEQ 111
>sp|Q7S7F1|RL30_NEUCR 60S ribosomal protein L30 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-30
PE=3 SV=1
Length = 109
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 44/50 (88%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
RKSE+EYY+M++KT VHHYTG NIELGTACGK FR T++I DAGDSDI+
Sbjct: 55 RKSELEYYSMMSKTAVHHYTGTNIELGTACGKLFRCSTMAILDAGDSDIL 104
>sp|P52808|RL30A_SCHPO 60S ribosomal protein L30-1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl30a PE=3 SV=2
Length = 109
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/50 (76%), Positives = 43/50 (86%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
RKSE+EYYAML+K VHHY G NI+LGTACGK FRV L+ITDAGDSDI+
Sbjct: 58 RKSELEYYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107
>sp|P49153|RL30_TRYBB 60S ribosomal protein L30 OS=Trypanosoma brucei brucei GN=RPL30
PE=3 SV=1
Length = 105
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 43/49 (87%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDI 137
RK+EIEYY L+KT +HHY+GNN++LGTACG++FR C LSITD GDSDI
Sbjct: 54 RKAEIEYYCTLSKTPIHHYSGNNLDLGTACGRHFRACVLSITDVGDSDI 102
>sp|Q9UTP0|RL30B_SCHPO 60S ribosomal protein L30-2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl30b PE=3 SV=1
Length = 117
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 44/50 (88%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
RKSE+EYYAML++ VHHY+GNNI+LGTACGK FRV L++ DAGDSDI+
Sbjct: 66 RKSELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115
>sp|Q55BS9|RL30_DICDI 60S ribosomal protein L30 OS=Dictyostelium discoideum GN=rpl30 PE=3
SV=1
Length = 112
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 49/56 (87%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSE 144
R+SEIEYYAML+KT VH Y+GNN++LGTA G+++RV +SITDAGDSDI+ ++ ++
Sbjct: 56 RRSEIEYYAMLSKTTVHLYSGNNVDLGTALGRHYRVSVMSITDAGDSDILTALNAK 111
>sp|P0DJ59|RL30_TETTS 60S ribosomal protein L30 OS=Tetrahymena thermophila (strain SB210)
GN=RPL30 PE=1 SV=1
Length = 104
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 44/52 (84%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRS 140
RKSEIEYYA LA+ +HH+ G+N+ELGTACGKY R T++I DAGDSDI+++
Sbjct: 52 RKSEIEYYASLAQISIHHFVGSNVELGTACGKYHRCSTMAILDAGDSDILKT 103
>sp|P39095|RL30_LEIMA 60S ribosomal protein L30 OS=Leishmania major GN=RPL30 PE=3 SV=1
Length = 104
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 42/49 (85%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDI 137
R++E+EYY L+KT +HHY+GNN++LGTACGK FR C LS+T+ GDSDI
Sbjct: 54 RRAEVEYYCTLSKTPIHHYSGNNLDLGTACGKPFRTCVLSVTNVGDSDI 102
>sp|Q6C4U7|RL30_YARLI 60S ribosomal protein L30 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=RPL30 PE=3 SV=1
Length = 109
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 41/50 (82%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
RKSEIEYYAMLAK VHH+ G N ELGT+CG+ FRV ++I DAGDSDI+
Sbjct: 55 RKSEIEYYAMLAKCTVHHFQGGNNELGTSCGRLFRVGAVTIMDAGDSDIL 104
>sp|Q6FXZ0|RL30_CANGA 60S ribosomal protein L30 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPL30
PE=3 SV=1
Length = 105
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 44/56 (78%)
Query: 87 VYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMP 142
V RKSE+EYYAML+KT V+++ G N ELGTA GK FRV +S+ DAGDSDI+ ++
Sbjct: 50 VLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSVLDAGDSDILTALA 105
>sp|Q5I7K9|RL30_WHEAT 60S ribosomal protein L30 OS=Triticum aestivum PE=1 SV=2
Length = 112
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 38/45 (84%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAG 133
RKSEIE YAMLAK VHH+ GNN++LGTACGKY+RVC LSI D G
Sbjct: 56 RKSEIETYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPG 100
>sp|P38664|RL30_KLULA 60S ribosomal protein L30 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RPL30 PE=3 SV=2
Length = 105
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 44/56 (78%)
Query: 87 VYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMP 142
V RKSE+EYYAML+KT V+++ G N ELGTA GK FRV ++I DAGDSDI+ ++
Sbjct: 50 VLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVTILDAGDSDILTALA 105
>sp|P14120|RL30_YEAST 60S ribosomal protein L30 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL30 PE=1 SV=3
Length = 105
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 44/56 (78%)
Query: 87 VYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMP 142
V RKSE+EYYAML+KT V+++ G N ELGTA GK FRV +SI +AGDSDI+ ++
Sbjct: 50 VLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTLA 105
>sp|Q752U5|RL30_ASHGO 60S ribosomal protein L30 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL30 PE=3 SV=3
Length = 105
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 44/56 (78%)
Query: 87 VYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMP 142
V RKSE+EYYAML+KT V+++ G N ELGTA GK FRV +++ DAGDSDI+ ++
Sbjct: 50 VLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVTVLDAGDSDILTTLA 105
>sp|O27127|RL30E_METTH 50S ribosomal protein L30e OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpl30e PE=3 SV=1
Length = 98
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 90 KSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIR 139
K +IEYYA L++ V+ + G ++ELG+ CGK F V L I D GDS I+
Sbjct: 46 KEDIEYYAKLSEIPVYTHEGTSVELGSVCGKPFTVGALLIQDPGDSTILE 95
>sp|Q980R3|RL30E_SULSO 50S ribosomal protein L30e OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl30e PE=3 SV=1
Length = 108
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 90 KSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
K +I +YA L+ V+ Y G+ +LGT CGK F + T+SI D GDS I+
Sbjct: 54 KQDIMHYAKLSNIPVYEYKGSGWDLGTLCGKPFMISTISIIDEGDSKIL 102
>sp|A5ULN4|RL30E_METS3 50S ribosomal protein L30e OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rpl30e PE=3 SV=1
Length = 99
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 92 EIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSM 141
++EYY L+ + Y G+++ELG+ CGK F V TL + D GDS I+ +
Sbjct: 49 DVEYYTNLSDIPSYTYEGSSVELGSVCGKPFTVATLIVNDPGDSTILDDL 98
>sp|Q8U0M6|RL30E_PYRFU 50S ribosomal protein L30e OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl30e PE=1 SV=1
Length = 99
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 90 KSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
K +I YYA L+ V+ + G ++ELGT GK F V +L+I D G+S I+
Sbjct: 46 KDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESKIL 94
>sp|O74018|RL30E_PYRHO 50S ribosomal protein L30e OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl30e PE=3 SV=1
Length = 99
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 90 KSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
K +I YYA L+ V+ + G ++ELGT GK F V +L+I D G+S I+
Sbjct: 46 KDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESRIL 94
>sp|Q2NEK6|RL30E_METST 50S ribosomal protein L30e OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rpl30e PE=3 SV=1
Length = 98
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 90 KSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIR 139
K++IE Y+ L++ V+ + G+++ELG+ CGK F V L I + GDS+I+
Sbjct: 46 KADIEAYSKLSEMPVYTFEGSSVELGSICGKPFTVSVLIIQEPGDSNILE 95
>sp|Q9V112|RL30E_PYRAB 50S ribosomal protein L30e OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl30e PE=3 SV=1
Length = 99
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 90 KSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
K +I YYA L+ V+ + G ++ELGT GK F V +L+I D G+S I+
Sbjct: 46 KDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESRIL 94
>sp|Q8TXJ0|RL30E_METKA 50S ribosomal protein L30e OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl30e PE=3 SV=1
Length = 109
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 90 KSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSM 141
+ +IEYYA LA V Y G +++LG CG+ V ++++ D G+SD+I ++
Sbjct: 47 REDIEYYAELADVPVFVYPGTSMDLGDVCGRPHVVASMAVLDDGESDLIATV 98
>sp|Q8ZYQ6|RL30E_PYRAE 50S ribosomal protein L30e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl30e PE=3 SV=1
Length = 102
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 88 YRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIR 139
+ + +IEYYA LA + + G++IELG A + ++ L++ DAG S+I++
Sbjct: 45 WARDDIEYYAKLAGVPIFVFPGSSIELGAAAKRPHKIMALAVIDAGQSEILK 96
>sp|A1RSE6|RL30E_PYRIL 50S ribosomal protein L30e OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rpl30e PE=3 SV=1
Length = 101
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 88 YRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIR 139
+ K ++EYYA LA V + G++IELG A + ++ L++ D G S+I++
Sbjct: 45 WAKEDVEYYAKLAGVPVFIFPGSSIELGAAAKRPHKIMALAVIDPGQSEILK 96
>sp|B8GDW0|RL30E_METPE 50S ribosomal protein L30e OS=Methanosphaerula palustris (strain
ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl30e PE=3 SV=1
Length = 96
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 104 VHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
VH Y G++++LG ACGK F V L+I +AG+SDII
Sbjct: 57 VHTYEGSSMQLGKACGKPFMVSALAIVNAGESDII 91
>sp|A3MXZ2|RL30E_PYRCJ 50S ribosomal protein L30e OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=rpl30e PE=3 SV=1
Length = 101
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 77 CPNSVWVLSCVYR--KSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGD 134
P V + + R + +IEYYA LA + + G++IELG A + ++ L++ D G
Sbjct: 32 APKLVIIAANAPRWAREDIEYYAKLAGVPIFTFPGSSIELGAAAKRPHKIMALAVVDPGQ 91
Query: 135 SDIIR 139
S+I++
Sbjct: 92 SEILK 96
>sp|B1YC27|RL30E_PYRNV 50S ribosomal protein L30e OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=rpl30e PE=3 SV=1
Length = 101
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 88 YRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIR 139
+ + +IEYYA LA V + G++IELG A + ++ L++ D G S+I++
Sbjct: 45 WARGDIEYYAKLAGVPVFIFPGSSIELGAAAKRPHKIMALAVLDPGQSEILK 96
>sp|P29160|RL30E_THECE 50S ribosomal protein L30e OS=Thermococcus celer GN=rpl30e PE=1
SV=1
Length = 101
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 90 KSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
K +IEYYA L+ V+ + G ++ELGT G+ V L++ D G+S I+
Sbjct: 47 KEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVVDPGESRIL 95
>sp|C6A1G2|RL30E_THESM 50S ribosomal protein L30e OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=rpl30e PE=3 SV=1
Length = 100
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 90 KSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
K +I YYA L+ V+ + G ++ELGT GK F + ++I + G+S I+
Sbjct: 46 KDDINYYAGLSSIPVYEFEGTSVELGTLLGKPFVIALMAIVEPGESKIL 94
>sp|P58376|RL30E_SULTO 50S ribosomal protein L30e OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl30e PE=3 SV=1
Length = 106
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 90 KSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSM 141
K +I YA ++ V+ Y G+ ELGT CGK F + T+ + D G+S ++ +
Sbjct: 50 KDDILAYAKISNIPVYQYNGSAYELGTLCGKPFMISTIGVIDPGESRLLEEI 101
>sp|Q2FPJ8|RL30E_METHJ 50S ribosomal protein L30e OS=Methanospirillum hungatei (strain
JF-1 / DSM 864) GN=rpl30e PE=3 SV=1
Length = 95
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 100 AKTGVHHYT--GNNIELGTACGKYFRVCTLSITDAGDSDII 138
K GV YT G+ ++LG ACGK F V L+I ++GDSDI+
Sbjct: 51 GKDGVKTYTYEGSGVQLGRACGKPFIVSALAIEESGDSDIL 91
>sp|Q8PUR3|RL30E_METMA 50S ribosomal protein L30e OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rpl30e PE=3 SV=1
Length = 103
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 104 VHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRS 140
V Y G ++ELG CGK F + ++I DAG+SDI+ +
Sbjct: 65 VLEYEGTSVELGPVCGKPFTIAAMAILDAGESDILAA 101
>sp|A7I9N4|RL30E_METB6 50S ribosomal protein L30e OS=Methanoregula boonei (strain 6A8)
GN=rpl30e PE=3 SV=1
Length = 97
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 104 VHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
+H + G+++ LG ACGK F V TL+I G+SDI+
Sbjct: 57 IHTFEGSSVALGKACGKPFMVSTLAIVSPGESDIL 91
>sp|Q8TRB9|RL30E_METAC 50S ribosomal protein L30e OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpl30e PE=3
SV=1
Length = 99
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 104 VHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRS 140
V Y G ++ELG CGK F + ++I D G+SDI+ +
Sbjct: 61 VLEYEGTSVELGPVCGKPFTIAAMAILDVGESDILAA 97
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,158,127
Number of Sequences: 539616
Number of extensions: 1721780
Number of successful extensions: 3043
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2978
Number of HSP's gapped (non-prelim): 68
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)