Query psy16179
Match_columns 145
No_of_seqs 115 out of 289
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 22:46:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1911 RPL30 Ribosomal protei 100.0 7.3E-33 1.6E-37 205.3 8.7 86 47-139 10-99 (100)
2 PTZ00106 60S ribosomal protein 100.0 1.5E-28 3.2E-33 182.3 9.4 89 47-142 16-108 (108)
3 PRK01018 50S ribosomal protein 99.9 4E-27 8.6E-32 171.0 9.2 86 48-140 8-97 (99)
4 KOG2988|consensus 99.9 3.7E-26 8E-31 172.4 8.4 90 48-144 18-111 (112)
5 PRK05583 ribosomal protein L7A 99.9 3.7E-23 8E-28 152.2 8.3 86 47-141 8-97 (104)
6 PRK07714 hypothetical protein; 99.9 1E-22 2.3E-27 147.2 8.2 86 47-141 9-98 (100)
7 PRK07283 hypothetical protein; 99.9 1.3E-22 2.8E-27 146.9 8.2 85 47-141 9-97 (98)
8 PRK06683 hypothetical protein; 99.9 1.9E-21 4.2E-26 138.0 8.4 76 48-131 3-82 (82)
9 TIGR03677 rpl7ae 50S ribosomal 99.8 6.5E-21 1.4E-25 142.2 8.8 92 41-140 10-107 (117)
10 PRK04175 rpl7ae 50S ribosomal 99.8 4.7E-20 1E-24 138.8 8.8 92 41-140 14-111 (122)
11 PRK13602 putative ribosomal pr 99.8 5.4E-20 1.2E-24 130.1 7.9 71 52-130 7-81 (82)
12 PF01248 Ribosomal_L7Ae: Ribos 99.7 5E-18 1.1E-22 119.1 7.9 84 47-138 6-94 (95)
13 PRK13601 putative L7Ae-like ri 99.7 1.6E-16 3.4E-21 113.4 7.4 68 55-130 7-78 (82)
14 PRK09190 hypothetical protein; 99.7 2.6E-16 5.6E-21 129.4 8.7 102 30-140 83-196 (220)
15 COG1358 RPL8A Ribosomal protei 99.6 2.7E-15 5.9E-20 113.3 5.9 87 47-142 18-109 (116)
16 PTZ00222 60S ribosomal protein 99.1 1.1E-10 2.4E-15 99.1 7.2 71 57-136 133-208 (263)
17 PTZ00365 60S ribosomal protein 98.8 8.7E-09 1.9E-13 87.8 5.6 65 70-136 139-208 (266)
18 PRK13600 putative ribosomal pr 98.7 7.3E-08 1.6E-12 69.5 7.4 66 57-130 14-83 (84)
19 KOG3406|consensus 97.4 0.00067 1.5E-08 53.2 6.6 90 32-135 16-121 (134)
20 KOG3167|consensus 94.4 0.062 1.4E-06 43.1 4.2 85 47-139 50-140 (153)
21 KOG3387|consensus 91.9 0.43 9.2E-06 37.6 5.3 67 71-138 42-116 (131)
22 PF08032 SpoU_sub_bind: RNA 2' 78.2 12 0.00026 24.4 6.1 61 70-132 7-72 (76)
23 COG4087 Soluble P-type ATPase 68.4 16 0.00034 29.5 5.5 81 50-140 24-109 (152)
24 PF10087 DUF2325: Uncharacteri 63.5 11 0.00024 26.4 3.5 39 71-111 42-85 (97)
25 cd01424 MGS_CPS_II Methylglyox 61.3 20 0.00043 25.4 4.5 44 70-117 58-107 (110)
26 PF00578 AhpC-TSA: AhpC/TSA fa 58.7 56 0.0012 22.3 7.6 58 64-121 44-101 (124)
27 TIGR00186 rRNA_methyl_3 rRNA m 58.6 69 0.0015 26.2 7.8 66 57-132 3-71 (237)
28 cd00532 MGS-like MGS-like doma 57.5 25 0.00055 25.3 4.5 37 70-106 58-104 (112)
29 PF02142 MGS: MGS-like domain 57.2 29 0.00062 24.2 4.7 36 70-105 51-94 (95)
30 PRK05234 mgsA methylglyoxal sy 54.4 22 0.00047 27.5 4.0 37 70-106 66-111 (142)
31 cd03017 PRX_BCP Peroxiredoxin 53.1 77 0.0017 22.3 7.9 53 70-122 48-100 (140)
32 cd02971 PRX_family Peroxiredox 50.5 85 0.0018 22.0 7.4 58 64-121 41-99 (140)
33 PRK09437 bcp thioredoxin-depen 48.1 80 0.0017 23.0 6.0 55 66-120 51-105 (154)
34 cd02970 PRX_like2 Peroxiredoxi 46.4 1E+02 0.0022 21.7 7.4 57 65-121 43-99 (149)
35 cd01423 MGS_CPS_I_III Methylgl 44.3 19 0.00041 25.8 2.1 44 70-117 62-113 (116)
36 PRK09932 glycerate kinase II; 44.0 71 0.0015 28.9 6.1 75 54-132 262-347 (381)
37 smart00851 MGS MGS-like domain 43.0 62 0.0014 22.1 4.5 36 70-105 46-89 (90)
38 cd01422 MGS Methylglyoxal synt 42.8 61 0.0013 23.8 4.7 37 70-106 61-106 (115)
39 PF00142 Fer4_NifH: 4Fe-4S iro 42.7 95 0.0021 27.1 6.5 59 57-115 148-216 (273)
40 cd03018 PRX_AhpE_like Peroxire 36.8 1.5E+02 0.0033 21.0 7.7 58 64-121 47-106 (149)
41 PF12062 HSNSD: heparan sulfat 35.8 40 0.00087 31.7 3.3 40 71-110 101-149 (487)
42 PRK12702 mannosyl-3-phosphogly 34.6 97 0.0021 27.4 5.3 46 68-113 23-70 (302)
43 TIGR02461 osmo_MPG_phos mannos 34.4 86 0.0019 25.1 4.7 46 69-114 21-68 (225)
44 PF06306 CgtA: Beta-1,4-N-acet 34.4 38 0.00082 30.6 2.8 59 28-107 83-147 (347)
45 COG0028 IlvB Thiamine pyrophos 34.0 93 0.002 28.9 5.4 81 22-107 150-234 (550)
46 cd07987 LPLAT_MGAT-like Lysoph 33.4 1.5E+02 0.0032 23.0 5.7 62 47-116 64-145 (212)
47 PLN02331 phosphoribosylglycina 32.6 95 0.0021 25.4 4.7 40 70-109 15-57 (207)
48 PF08228 RNase_P_pop3: RNase P 31.6 1.7E+02 0.0036 23.5 5.8 77 56-140 55-146 (158)
49 KOG3282|consensus 31.4 82 0.0018 26.4 4.2 35 74-108 119-155 (190)
50 PRK11181 23S rRNA (guanosine-2 31.3 2.9E+02 0.0062 22.8 7.4 68 56-132 3-76 (244)
51 CHL00073 chlN photochlorophyll 31.1 78 0.0017 29.2 4.3 64 50-113 68-140 (457)
52 PRK10342 glycerate kinase I; P 30.5 1.5E+02 0.0033 26.8 6.0 74 54-132 262-347 (381)
53 PF03465 eRF1_3: eRF1 domain 3 30.1 2.2E+02 0.0048 20.8 7.5 62 48-117 12-97 (113)
54 PF01297 TroA: Periplasmic sol 27.8 75 0.0016 25.4 3.3 48 60-107 180-228 (256)
55 PRK13010 purU formyltetrahydro 27.4 1.5E+02 0.0032 25.5 5.2 48 57-108 99-148 (289)
56 cd04196 GT_2_like_d Subfamily 27.2 2.4E+02 0.0052 20.5 5.7 45 63-107 11-59 (214)
57 cd01020 TroA_b Metal binding p 27.0 1.3E+02 0.0028 24.7 4.6 48 60-107 187-238 (264)
58 PRK05647 purN phosphoribosylgl 26.4 1.7E+02 0.0037 23.5 5.1 39 70-108 17-58 (200)
59 cd07583 nitrilase_5 Uncharacte 26.3 2E+02 0.0043 22.6 5.4 61 68-133 21-101 (253)
60 COG2121 Uncharacterized protei 26.3 94 0.002 26.4 3.7 73 59-132 98-184 (214)
61 PF09846 DUF2073: Uncharacteri 26.1 1.3E+02 0.0028 23.0 4.1 69 70-142 12-93 (104)
62 cd07985 LPLAT_GPAT Lysophospho 25.5 1.2E+02 0.0025 25.8 4.2 37 71-107 107-162 (235)
63 PRK00124 hypothetical protein; 25.3 2.1E+02 0.0046 22.7 5.4 22 85-108 10-31 (151)
64 PF04900 Fcf1: Fcf1; InterPro 25.1 1.4E+02 0.003 21.1 3.9 43 66-113 54-97 (101)
65 PRK03147 thiol-disulfide oxido 24.8 2.8E+02 0.006 20.2 8.0 57 65-121 80-137 (173)
66 cd03011 TlpA_like_ScsD_MtbDsbE 24.4 2.4E+02 0.0052 19.3 6.2 61 73-134 43-104 (123)
67 TIGR01766 tspaseT_teng_C trans 24.4 87 0.0019 20.9 2.7 23 85-107 54-76 (82)
68 PRK14099 glycogen synthase; Pr 24.4 1.9E+02 0.0041 26.0 5.5 55 64-118 309-366 (485)
69 cd04185 GT_2_like_b Subfamily 24.2 1.5E+02 0.0032 21.8 4.1 43 59-101 6-52 (202)
70 PF13911 AhpC-TSA_2: AhpC/TSA 23.8 1.3E+02 0.0029 21.0 3.7 48 73-121 7-55 (115)
71 cd01018 ZntC Metal binding pro 23.8 1.3E+02 0.0029 24.6 4.1 49 59-107 197-246 (266)
72 TIGR00045 glycerate kinase. Th 23.7 3E+02 0.0065 24.8 6.6 74 54-132 261-346 (375)
73 TIGR00655 PurU formyltetrahydr 23.6 1.7E+02 0.0037 24.9 4.9 48 57-109 90-140 (280)
74 PF01981 PTH2: Peptidyl-tRNA h 23.6 2.8E+02 0.0061 20.2 5.4 62 73-139 44-107 (116)
75 PF03618 Kinase-PPPase: Kinase 23.5 1.4E+02 0.0031 25.5 4.4 56 65-121 39-98 (255)
76 PLN02828 formyltetrahydrofolat 23.3 1.9E+02 0.0041 24.8 5.0 50 57-109 76-131 (268)
77 KOG2822|consensus 23.0 41 0.00088 31.0 1.0 12 9-20 132-143 (407)
78 COG1861 SpsF Spore coat polysa 22.9 1.1E+02 0.0025 26.4 3.7 52 60-114 26-79 (241)
79 TIGR02463 MPGP_rel mannosyl-3- 22.9 2.3E+02 0.005 21.7 5.1 45 69-113 22-69 (221)
80 PRK04322 peptidyl-tRNA hydrola 22.6 3.1E+02 0.0068 20.4 5.6 61 75-140 43-105 (113)
81 PF07282 OrfB_Zn_ribbon: Putat 22.6 1E+02 0.0022 20.1 2.7 19 89-107 4-22 (69)
82 PRK00299 sulfur transfer prote 21.7 2.8E+02 0.0061 19.1 5.4 38 70-107 28-66 (81)
83 cd06420 GT2_Chondriotin_Pol_N 21.5 3.1E+02 0.0067 19.5 6.1 45 63-107 10-58 (182)
84 PF08645 PNK3P: Polynucleotide 21.3 2.5E+02 0.0055 21.5 5.0 52 67-121 33-98 (159)
85 TIGR00108 eRF peptide chain re 21.2 2.9E+02 0.0062 24.9 6.0 24 54-84 290-313 (409)
86 cd03013 PRX5_like Peroxiredoxi 21.0 3.4E+02 0.0073 20.5 5.6 56 65-120 50-108 (155)
87 PF13867 SAP30_Sin3_bdg: Sin3 20.6 27 0.00058 22.9 -0.5 32 92-124 5-36 (53)
88 KOG0075|consensus 20.4 39 0.00084 28.1 0.3 26 73-98 58-87 (186)
89 PRK04011 peptide chain release 20.3 2.7E+02 0.0058 25.1 5.6 25 54-85 294-318 (411)
No 1
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=7.3e-33 Score=205.30 Aligned_cols=86 Identities=36% Similarity=0.579 Sum_probs=83.0
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCc
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYF 122 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~F 122 (145)
-||+|+++|||+.|++ +++|++|.|++|||| ||++.|++|||||+|+++|||+|+|||+|||.+|||||
T Consensus 10 ~L~~avkTGkvilG~k-------~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ipV~~y~Gt~~eLG~~cgkpf 82 (100)
T COG1911 10 ELKLAVKTGKVILGSK-------RTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIPVYVYEGTSVELGTVCGKPF 82 (100)
T ss_pred HHHHHHhcCCEEEehH-------HHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCcEEEecCCceeHHhhhCCCc
Confidence 4899999999999999 578889999999999 99999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCchHHHh
Q psy16179 123 RVCTLSITDAGDSDIIR 139 (145)
Q Consensus 123 RVSvLAItD~G~SdIL~ 139 (145)
||+++||+|+|+|+||.
T Consensus 83 ~v~~laIiD~G~S~Il~ 99 (100)
T COG1911 83 RVAALAIIDEGDSDILA 99 (100)
T ss_pred eEEEEEEecCchhhhhc
Confidence 99999999999999985
No 2
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=99.95 E-value=1.5e-28 Score=182.26 Aligned_cols=89 Identities=51% Similarity=0.790 Sum_probs=85.8
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCc
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYF 122 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~F 122 (145)
.|.+|.+|||+.+|++ +|++++++|+++||| ||++++++|++||.+++||++.|.||+.|||+||||+|
T Consensus 16 ~Lgla~raGKlv~G~~-------~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~Gk~~ 88 (108)
T PTZ00106 16 KLQLVMKSGKYTLGTK-------STLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTACGRHF 88 (108)
T ss_pred HHHHHHHhCCeeecHH-------HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHhCCcc
Confidence 4889999999999999 699999999999999 99999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCchHHHhcCC
Q psy16179 123 RVCTLSITDAGDSDIIRSMP 142 (145)
Q Consensus 123 RVSvLAItD~G~SdIL~~l~ 142 (145)
|+|+++|+|+|||++|+.|+
T Consensus 89 r~svvaI~D~G~a~~l~~~~ 108 (108)
T PTZ00106 89 RVSVMSITDAGDSDILRALE 108 (108)
T ss_pred CeEEEEEeCcchHHHHhhcC
Confidence 99999999999999998763
No 3
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=99.94 E-value=4e-27 Score=171.01 Aligned_cols=86 Identities=34% Similarity=0.556 Sum_probs=83.6
Q ss_pred hHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcc
Q psy16179 48 LKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFR 123 (145)
Q Consensus 48 ~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FR 123 (145)
|++|.++||+.+|++ +|++++++|+|+||| +|++++++|+++|+.++||++.|.||+.|||+|||++|+
T Consensus 8 l~~a~ragkl~~G~~-------~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~Gk~~~ 80 (99)
T PRK01018 8 LRVAVDTGKVILGSK-------RTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCGKPFT 80 (99)
T ss_pred HHHHHHcCCEEEcHH-------HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHhCCCCC
Confidence 899999999999999 699999999999999 999999999999999999999998999999999999999
Q ss_pred eEEEEEecCCchHHHhc
Q psy16179 124 VCTLSITDAGDSDIIRS 140 (145)
Q Consensus 124 VSvLAItD~G~SdIL~~ 140 (145)
+++++|+|+|||++|..
T Consensus 81 ~~~vaI~D~G~a~~~~~ 97 (99)
T PRK01018 81 VSALAIVDPGESDILEL 97 (99)
T ss_pred EEEEEEecCCHHHHHHh
Confidence 99999999999999974
No 4
>KOG2988|consensus
Probab=99.93 E-value=3.7e-26 Score=172.40 Aligned_cols=90 Identities=51% Similarity=0.784 Sum_probs=86.0
Q ss_pred hHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcc
Q psy16179 48 LKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFR 123 (145)
Q Consensus 48 ~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FR 123 (145)
|-++|++|||..|.. +++|.+|.|+|||++ ||+.+|++||||+|+++.+||+|+|+|+|||++||+.||
T Consensus 18 lll~mksgkY~lgyK-------~T~k~~r~gkakL~~is~n~p~lrks~ieyyamlak~~v~~~sg~n~~lgt~~g~~fR 90 (112)
T KOG2988|consen 18 LLLVMKSGKYILGYK-------QTLKSLRQGKAKLIIISSNCPPLRKSEIEYYAMLAKTGVHHYSGNNVELGTACGKTFR 90 (112)
T ss_pred HHHHHhhcceeechH-------HHHHHHHhccceEEEeecCCCCcchhHHHHHHHHhcCceeeecCCcEeHHHHhcCeeE
Confidence 457899999999999 688999999999999 999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCchHHHhcCCCC
Q psy16179 124 VCTLSITDAGDSDIIRSMPSE 144 (145)
Q Consensus 124 VSvLAItD~G~SdIL~~l~~~ 144 (145)
+|+++|+|+|++|++..++|.
T Consensus 91 v~v~~ivd~gds~~~~~l~e~ 111 (112)
T KOG2988|consen 91 VSVLSIVDLGDSDIIAALSER 111 (112)
T ss_pred eeEEEEEeccchhhhhhcccc
Confidence 999999999999999999875
No 5
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=99.89 E-value=3.7e-23 Score=152.17 Aligned_cols=86 Identities=14% Similarity=0.095 Sum_probs=82.2
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCc
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYF 122 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~F 122 (145)
.|.+|.||||+++|++ .|++++|+|+++||| +|+++|++|+++|++++||++.| ||+.|||.||||++
T Consensus 8 lLglA~rAGklv~G~~-------~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~-~t~~eLg~a~Gk~~ 79 (104)
T PRK05583 8 FLGLTKKAGKLLEGYN-------KCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEG-YSKEELGNAIGRDE 79 (104)
T ss_pred HHHHHHHhCCeeecHH-------HHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEe-cCHHHHHHHhCCCC
Confidence 6899999999999999 699999999999999 99999999999999999999999 99999999999999
Q ss_pred ceEEEEEecCCchHHHhcC
Q psy16179 123 RVCTLSITDAGDSDIIRSM 141 (145)
Q Consensus 123 RVSvLAItD~G~SdIL~~l 141 (145)
++ ++||+|+|||+.+.++
T Consensus 80 ~~-~iai~d~g~a~~l~~~ 97 (104)
T PRK05583 80 IK-ILGVKDKNMAKKLLKL 97 (104)
T ss_pred eE-EEEEeChHHHHHHHHH
Confidence 55 9999999999998764
No 6
>PRK07714 hypothetical protein; Provisional
Probab=99.88 E-value=1e-22 Score=147.22 Aligned_cols=86 Identities=24% Similarity=0.283 Sum_probs=82.2
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCc
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYF 122 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~F 122 (145)
.|.+|.|||++++|++ +|++++++|+++||| +|++++++++++|..++||++.+ +++.|||+|||+++
T Consensus 9 ~Lgla~raGk~v~G~~-------~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~-~sk~eLG~a~Gk~~ 80 (100)
T PRK07714 9 FLGLANRARKVISGEE-------LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKV-ENRQQLGHAIGKDE 80 (100)
T ss_pred HHHHHHHhCCeeecHH-------HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEe-CCHHHHHHHhCCCc
Confidence 5889999999999999 799999999999999 99999999999999999999988 99999999999999
Q ss_pred ceEEEEEecCCchHHHhcC
Q psy16179 123 RVCTLSITDAGDSDIIRSM 141 (145)
Q Consensus 123 RVSvLAItD~G~SdIL~~l 141 (145)
++ ++||+|+|||+.|..+
T Consensus 81 ~~-~vai~d~g~a~~l~~~ 98 (100)
T PRK07714 81 RV-VVAVLDEGFAKKLRSM 98 (100)
T ss_pred ce-EEEEeCchhHHHHHHH
Confidence 98 9999999999998764
No 7
>PRK07283 hypothetical protein; Provisional
Probab=99.88 E-value=1.3e-22 Score=146.93 Aligned_cols=85 Identities=22% Similarity=0.255 Sum_probs=80.0
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCc
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYF 122 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~F 122 (145)
.|.+|.|||++++|++ +|++++|+|+++||| +++++++++.+.|..|+||++.| +|+.|||+||||+
T Consensus 9 ~LglA~raGklv~G~~-------~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~-~t~~eLG~a~Gk~- 79 (98)
T PRK07283 9 LLGLAQRAGRIISGEE-------LVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTV-FSTLELSAAVGKP- 79 (98)
T ss_pred HHHHHHHhCCeeEcHH-------HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEe-CCHHHHHHHhCCC-
Confidence 5889999999999999 699999999999999 99999999999999999999999 7999999999998
Q ss_pred ceEEEEEecCCchHHHhcC
Q psy16179 123 RVCTLSITDAGDSDIIRSM 141 (145)
Q Consensus 123 RVSvLAItD~G~SdIL~~l 141 (145)
|+ ++||+|+|||++|.++
T Consensus 80 ~~-vvai~d~g~a~~l~~~ 97 (98)
T PRK07283 80 RK-VLAVTDAGFSKKMRSL 97 (98)
T ss_pred ce-EEEEeChhHHHHHHHh
Confidence 54 7999999999999764
No 8
>PRK06683 hypothetical protein; Provisional
Probab=99.85 E-value=1.9e-21 Score=138.02 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=72.3
Q ss_pred hHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcc
Q psy16179 48 LKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFR 123 (145)
Q Consensus 48 ~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FR 123 (145)
+..+.++||+++|++ ++++++|+|+++||| |+++++++|+++|++++||+++| +|+.|||+|||++|.
T Consensus 3 ~~~~~~agk~v~G~~-------~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~-~t~~eLG~A~G~~~~ 74 (82)
T PRK06683 3 YQKVSNAENVVVGHK-------RTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKV-ESVRKLGKVAGIQVG 74 (82)
T ss_pred hHHHHhCCCEEEcHH-------HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEE-CCHHHHHHHhCCccc
Confidence 567789999999999 699999999999999 99999999999999999999999 599999999999999
Q ss_pred eEEEEEec
Q psy16179 124 VCTLSITD 131 (145)
Q Consensus 124 VSvLAItD 131 (145)
+|+++|+.
T Consensus 75 ~a~~ai~~ 82 (82)
T PRK06683 75 ASAIGIIS 82 (82)
T ss_pred EEEEEEeC
Confidence 99999973
No 9
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=99.84 E-value=6.5e-21 Score=142.22 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=81.9
Q ss_pred hcchhh-hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccc-hhHHHHHHHHhhCCcEEEEccCcchh
Q psy16179 41 ISNKVL-VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVY-RKSEIEYYAMLAKTGVHHYTGNNIEL 114 (145)
Q Consensus 41 ~~~~~~-~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~n-tKkkIEyyAkL~kVPV~~y~Gtn~EL 114 (145)
..||++ +|++|.++|++.+|.+ +|++++++|+++||| ++++ ++++++++|+.++||++++ ||+.||
T Consensus 10 l~~ki~~lL~la~ragkl~~G~~-------~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~-~sk~eL 81 (117)
T TIGR03677 10 LANKALEAVEKARETGKIKKGTN-------EVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYV-KKKEDL 81 (117)
T ss_pred HHHHHHHHHHHHHHcCCEeEcHH-------HHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEe-CCHHHH
Confidence 345543 7899999999999999 799999999999999 7765 7999999999999996555 999999
Q ss_pred hhhhCCCcceEEEEEecCCchHHHhc
Q psy16179 115 GTACGKYFRVCTLSITDAGDSDIIRS 140 (145)
Q Consensus 115 G~AcGK~FRVSvLAItD~G~SdIL~~ 140 (145)
|++||+++++++++|+|+||++.+.+
T Consensus 82 G~a~Gk~~~~svvaI~d~g~a~~~~~ 107 (117)
T TIGR03677 82 GAAAGLEVGAASAAIVDEGKAEELLK 107 (117)
T ss_pred HHHhCCCCCeEEEEEEchhhhHHHHH
Confidence 99999999999999999999998643
No 10
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=99.82 E-value=4.7e-20 Score=138.81 Aligned_cols=92 Identities=14% Similarity=0.112 Sum_probs=82.1
Q ss_pred hcchhh-hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccc-hhHHHHHHHHhhCCcEEEEccCcchh
Q psy16179 41 ISNKVL-VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVY-RKSEIEYYAMLAKTGVHHYTGNNIEL 114 (145)
Q Consensus 41 ~~~~~~-~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~n-tKkkIEyyAkL~kVPV~~y~Gtn~EL 114 (145)
+.||++ +|++|.++|++.+|.+ +|++++|+|+++||| ++++ .+++++++|..++||++++ |++.||
T Consensus 14 l~~ki~~lL~la~ragklv~G~~-------~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~-~tk~eL 85 (122)
T PRK04175 14 LAEKALEAVEKARDTGKIKKGTN-------ETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYV-PSKKDL 85 (122)
T ss_pred HHHHHHHHHHHHHHcCCEeEcHH-------HHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEE-CCHHHH
Confidence 445554 7899999999999999 799999999999999 7664 5899999999999997655 999999
Q ss_pred hhhhCCCcceEEEEEecCCchHHHhc
Q psy16179 115 GTACGKYFRVCTLSITDAGDSDIIRS 140 (145)
Q Consensus 115 G~AcGK~FRVSvLAItD~G~SdIL~~ 140 (145)
|++||++|.+++++|+|+||++.+..
T Consensus 86 G~a~Gk~~~~svvaI~d~g~a~~~~~ 111 (122)
T PRK04175 86 GKAAGLEVGAAAAAIVDAGKAKELVE 111 (122)
T ss_pred HHHhCCCCCeEEEEEechhhhHHHHH
Confidence 99999999899999999999998643
No 11
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=99.81 E-value=5.4e-20 Score=130.11 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=68.5
Q ss_pred HhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEE
Q psy16179 52 ITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTL 127 (145)
Q Consensus 52 ~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvL 127 (145)
-++||+.+|++ ++++++++|+++||| ||++++++|+++|+.++||++.| +|+.|||++||++|+++++
T Consensus 7 ~ragkl~~G~~-------~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~-~s~~eLG~a~G~~~~~a~~ 78 (82)
T PRK13602 7 SQAKSIVIGTK-------QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKV-DSMKKLGKACGIEVGAAAV 78 (82)
T ss_pred HhcCCEEEcHH-------HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEE-CCHHHHHHHHCCCcCEEEE
Confidence 48899999999 799999999999999 99999999999999999999999 7999999999999999999
Q ss_pred EEe
Q psy16179 128 SIT 130 (145)
Q Consensus 128 AIt 130 (145)
+|+
T Consensus 79 ai~ 81 (82)
T PRK13602 79 AII 81 (82)
T ss_pred EEe
Confidence 996
No 12
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=99.75 E-value=5e-18 Score=119.05 Aligned_cols=84 Identities=24% Similarity=0.303 Sum_probs=80.0
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHH-HHHHHHhhCCcEEEEccCcchhhhhhCCC
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSE-IEYYAMLAKTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkk-IEyyAkL~kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
+|+.|.++|++..|.+ ++.+++++|++++|| ++++.+.+ ++++|..++||++.. +|+.+||++||++
T Consensus 6 ~l~~a~~~~~lv~G~~-------~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~-~s~~eLG~~~g~~ 77 (95)
T PF01248_consen 6 LLKLARKAGRLVKGIK-------EVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFV-PSKEELGRACGKK 77 (95)
T ss_dssp HHHHHHHHSEEEESHH-------HHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEE-SHHHHHHHHTTSS
T ss_pred HHHHHHhcCCEEEchH-------HHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEE-CCHHHHHHHHCCC
Confidence 6899999999999999 799999999999999 88888888 999999999999888 7999999999999
Q ss_pred cceEEEEEecCCchHHH
Q psy16179 122 FRVCTLSITDAGDSDII 138 (145)
Q Consensus 122 FRVSvLAItD~G~SdIL 138 (145)
+.+++++|+|+|+|++|
T Consensus 78 ~~~~~~~i~d~~~a~~l 94 (95)
T PF01248_consen 78 RPVSALAIKDAGDAKIL 94 (95)
T ss_dssp STSSEEEEEESTTHHHH
T ss_pred CcEEEEEEECcccchhh
Confidence 99999999999999987
No 13
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=99.67 E-value=1.6e-16 Score=113.43 Aligned_cols=68 Identities=16% Similarity=0.070 Sum_probs=63.6
Q ss_pred CceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEe
Q psy16179 55 SKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSIT 130 (145)
Q Consensus 55 Gk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAIt 130 (145)
||+.+|++ ++++++|+|+++||| ||++++++|+++|+.++||++++ +|+.|||+|||+.-..++.+|+
T Consensus 7 GKlv~G~~-------~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~-~t~~eLG~A~G~~v~aa~~~~~ 78 (82)
T PRK13601 7 SKRVVGAK-------QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYI-DTMKELGVMCGIDVGAAAAADI 78 (82)
T ss_pred ccEEEchH-------HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEe-CCHHHHHHHHCCccCeeeEEEe
Confidence 99999999 699999999999999 99999999999999999999655 9999999999999888777775
No 14
>PRK09190 hypothetical protein; Provisional
Probab=99.66 E-value=2.6e-16 Score=129.44 Aligned_cols=102 Identities=13% Similarity=0.160 Sum_probs=90.1
Q ss_pred echhhhhhhhhh-cchhh-hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHh----
Q psy16179 30 LPVDVWTSIARI-SNKVL-VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAML---- 99 (145)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~-~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL---- 99 (145)
.|.+++..+.+. .++++ .|.+|.+||++++|++ .|++++|+|+++||| ++++++++|..+|..
T Consensus 83 v~~~l~~~l~~~l~~ril~lLGLArRAGklVsG~~-------~V~~alk~gk~~Lvi~A~DaS~~t~kKl~~~~~~~~~~ 155 (220)
T PRK09190 83 VPPDLADLVEALLARRALDALGLARKAGQVVSGFE-------KVDAALRSGEAAALIHASDGAADGKRKLDQARRALVHE 155 (220)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhCCEeecHH-------HHHHHHHcCCceEEEEeccCChhHHHHHHHHHHhhccc
Confidence 466666665443 34443 7899999999999999 799999999999999 999999999999999
Q ss_pred --hCCcEEEEccCcchhhhhhCCCcceEEEEEecCCchHHHhc
Q psy16179 100 --AKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRS 140 (145)
Q Consensus 100 --~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD~G~SdIL~~ 140 (145)
|+||++.+ +|+.|||.|+|++.++ +++|+|.||++.|.+
T Consensus 156 ~~~~Vp~v~~-~tk~eLg~AlGr~~~~-~vav~d~gfA~~l~~ 196 (220)
T PRK09190 156 TGREIPVIGL-FTAAELGLAFGRENVI-HAALLAGGAAERVVK 196 (220)
T ss_pred ccCCccEEEe-cCHHHHHHHhCCCcee-EEEEcChHHHHHHHH
Confidence 99999999 9999999999999888 999999999998765
No 15
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=2.7e-15 Score=113.26 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=81.2
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE-----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCC
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL-----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI-----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
.+..|.++|++.+|.+ .+.|++++|+|+||+ -|++..+.++.+|..++||+.+. +|..+||++||++
T Consensus 18 ~l~~a~~~~ki~~G~~-------e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V-~sk~~LG~a~g~~ 89 (116)
T COG1358 18 LLGKASRAGKLKKGTN-------EVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYV-GSKKELGKAVGKE 89 (116)
T ss_pred HHHHHHhcCCchhhHH-------HHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEe-CCHHHHHHHhCCC
Confidence 5788999999999999 699999999999999 55999999999999999999999 9999999999999
Q ss_pred cceEEEEEecCCchHHHhcCC
Q psy16179 122 FRVCTLSITDAGDSDIIRSMP 142 (145)
Q Consensus 122 FRVSvLAItD~G~SdIL~~l~ 142 (145)
+|. +++++|+||++.+.++.
T Consensus 90 ~~~-vv~i~~~~~~~~~~~l~ 109 (116)
T COG1358 90 VRK-VVAIVDKGFAKKLEDLV 109 (116)
T ss_pred cce-eEEEeehhhhhHHHHHH
Confidence 988 99999999998887753
No 16
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=99.14 E-value=1.1e-10 Score=99.07 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=64.9
Q ss_pred eeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHH-HHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEec
Q psy16179 57 LFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSE-IEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITD 131 (145)
Q Consensus 57 ~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkk-IEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD 131 (145)
+.+|.+ .|+++|++|+|+||| +++++..+ |..+|..++||+..+ +++.+||++||+.-+. +++|+|
T Consensus 133 LvsG~n-------~VtkaIekkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iV-ktKaeLG~AIGkKtra-vVAItD 203 (263)
T PTZ00222 133 VVTGLQ-------EVTRAIEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIV-KDMARLGDAIGRKTAT-CVAITD 203 (263)
T ss_pred eccCHH-------HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEE-CCHHHHHHHHCCCCCe-EEEEee
Confidence 789999 799999999999999 88888865 999999999999999 8999999999998665 999999
Q ss_pred CCchH
Q psy16179 132 AGDSD 136 (145)
Q Consensus 132 ~G~Sd 136 (145)
.|..|
T Consensus 204 ~g~ed 208 (263)
T PTZ00222 204 VNAED 208 (263)
T ss_pred CCccc
Confidence 99754
No 17
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=98.78 E-value=8.7e-09 Score=87.78 Aligned_cols=65 Identities=8% Similarity=-0.010 Sum_probs=58.7
Q ss_pred HHHhhhcCCCeEEEE----eccchhHHH-HHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEecCCchH
Q psy16179 70 SFLSKMQCPNSVWVL----SCVYRKSEI-EYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSD 136 (145)
Q Consensus 70 ~VlkaiK~gkAkLVI----aP~ntKkkI-EyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD~G~Sd 136 (145)
.|.++|++|+|+||| +++++.+++ .++|..++||++++ ++..+||+++|+..|. ++||+|-...|
T Consensus 139 ~VtklIekkKAkLVIIA~DVsP~t~kk~LP~LC~k~~VPY~iv-~sK~eLG~AIGkktra-VVAItdV~~ED 208 (266)
T PTZ00365 139 HVTDLVEYKKAKLVVIAHDVDPIELVCFLPALCRKKEVPYCII-KGKSRLGKLVHQKTAA-VVAIDNVRKED 208 (266)
T ss_pred HHHHHHHhCCccEEEEeCCCCHHHHHHHHHHHHhccCCCEEEE-CCHHHHHHHhCCCCce-EEEecccCHHH
Confidence 589999999999999 889999996 79999999999999 8999999999999777 99999865433
No 18
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=98.70 E-value=7.3e-08 Score=69.54 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=60.5
Q ss_pred eeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEe
Q psy16179 57 LFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSIT 130 (145)
Q Consensus 57 ~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAIt 130 (145)
+..|-+ +++|++++|++++|+ +.+..-..+...|...++|+.+. .|..|||+|||..-..++.||+
T Consensus 14 ~vvG~k-------qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V-~s~~~LGkAcgi~V~aa~aai~ 83 (84)
T PRK13600 14 FVVGLK-------ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF-KSKHALGKHVGINVNATIVALI 83 (84)
T ss_pred ceeeHH-------HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE-CCHHHHHHHhCCCcCeEEEEEe
Confidence 489999 699999999999999 77777889999999999999988 9999999999999888888876
No 19
>KOG3406|consensus
Probab=97.36 E-value=0.00067 Score=53.24 Aligned_cols=90 Identities=19% Similarity=0.182 Sum_probs=75.7
Q ss_pred hhhhhhhhhhcchhhhhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE-----eccchhHHHHHHHHhhCCcEEE
Q psy16179 32 VDVWTSIARISNKVLVLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL-----SCVYRKSEIEYYAMLAKTGVHH 106 (145)
Q Consensus 32 ~~~~~~~~~~~~~~~~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI-----aP~ntKkkIEyyAkL~kVPV~~ 106 (145)
+|+-|.+. .|||+|+..+++..|-. ..-|++-+.+|.|++ .-|+-.|-+|-.|...+||++.
T Consensus 16 mdv~~AL~------~Vlk~al~~dGlarGi~-------Ea~KaldkrqA~lcvLaencdep~yvKLVeALcaeh~iplik 82 (134)
T KOG3406|consen 16 MDVNTALQ------EVLKTALVHDGLARGIH-------EAAKALDKRQAHLCVLAENCDEPMYVKLVEALCAEHQIPLIK 82 (134)
T ss_pred ccHHHHHH------HHHHHHHHhchHHhHHH-------HHHHHHhhCceeEEEEeccCCchHHHHHHHHHHhhcCCCeEE
Confidence 45555543 58999999999999988 577999999999999 4456788999999999999999
Q ss_pred EccCcchhhhhhCC-----------CcceEEEEEecCCch
Q psy16179 107 YTGNNIELGTACGK-----------YFRVCTLSITDAGDS 135 (145)
Q Consensus 107 y~Gtn~ELG~AcGK-----------~FRVSvLAItD~G~S 135 (145)
. ++..+||.-+|. --..|++.|.|-|+-
T Consensus 83 V-~d~k~LGew~Glckid~eGnarKvvGcs~vvVkd~gee 121 (134)
T KOG3406|consen 83 V-GDAKELGEWAGLCKIDSEGNARKVVGCSCVVVKDYGEE 121 (134)
T ss_pred e-ccchhhhhhhceeeecCCCCeeEeecceEEEEeecccc
Confidence 9 999999999973 245789999998864
No 20
>KOG3167|consensus
Probab=94.41 E-value=0.062 Score=43.07 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=64.6
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE-----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCC
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL-----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI-----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
.+|.|.+.+.+..|-. -|.|.+++|+==|+| .|-+.-..|--.|...++|+..- -+..+||.|.|-+
T Consensus 50 lvkKa~k~k~lrrGvK-------evqK~vrkGeKGl~VlAgd~sPiDvi~HlP~lCEd~~vPYvy~-psk~dlg~A~~~k 121 (153)
T KOG3167|consen 50 LVKKAAKQKGLRRGVK-------EVQKRVRKGEKGLCVLAGDTSPIDVITHLPALCEDRGVPYVYT-PSKEDLGAAGGTK 121 (153)
T ss_pred HHHHHHhhhhHHHHHH-------HHHHHHhcCCcceEEEecCCccHHHHhccchhhhccCCCcccc-ccHHHHHHhcCCC
Confidence 5788999999999988 699999999888877 66677777888999999997655 8999999998754
Q ss_pred cceE-EEEEecCCchHHHh
Q psy16179 122 FRVC-TLSITDAGDSDIIR 139 (145)
Q Consensus 122 FRVS-vLAItD~G~SdIL~ 139 (145)
-..+ ++...+.-+.+..+
T Consensus 122 rpt~~v~v~p~~eyke~yd 140 (153)
T KOG3167|consen 122 RPTCCVFVKPGGEYKELYD 140 (153)
T ss_pred CCceEEEEeeChhHHHHHH
Confidence 3333 44444443454443
No 21
>KOG3387|consensus
Probab=91.94 E-value=0.43 Score=37.62 Aligned_cols=67 Identities=18% Similarity=0.079 Sum_probs=52.6
Q ss_pred HHhhhcCCCeEEEE-----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhC---CCcceEEEEEecCCchHHH
Q psy16179 71 FLSKMQCPNSVWVL-----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACG---KYFRVCTLSITDAGDSDII 138 (145)
Q Consensus 71 VlkaiK~gkAkLVI-----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcG---K~FRVSvLAItD~G~SdIL 138 (145)
.=|.+.+|.+.+|+ =|-..-+.+-..|.--|||+.+. -++..||.+|| ..-.+-+.+|+..+-+..+
T Consensus 42 aTk~Lnrgi~~~Vv~aaD~kP~eIt~HLp~LcedknVp~v~V-psk~alG~~cg~~~~~r~~~a~~i~~~~~~~~~ 116 (131)
T KOG3387|consen 42 ATKTLNRGISEFVVMAADVKPLEITLHLPLLCEDKNVPYVFV-PSKQALGLACGELVVLRPVIACSITTNEASIPL 116 (131)
T ss_pred HhhhhccCceeEEEEEccCCHHHHHHHhHHHhhccCCceEEe-eccHHhhhhhhhHhhcCcceeEEEEeccccchh
Confidence 45778899999999 35556677888999999999999 69999999999 5555557777766655544
No 22
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=78.22 E-value=12 Score=24.39 Aligned_cols=61 Identities=10% Similarity=-0.046 Sum_probs=39.4
Q ss_pred HHHhhhcCCC-eEEEEeccc----hhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEecC
Q psy16179 70 SFLSKMQCPN-SVWVLSCVY----RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDA 132 (145)
Q Consensus 70 ~VlkaiK~gk-AkLVIaP~n----tKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD~ 132 (145)
.|..+++++. .+-|+..++ .-+++...|...++|++.. ++..|.+.++..-.-+++|+.++
T Consensus 7 ~V~eaL~~~~~i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v--~~~~l~~ls~~~~hQGv~a~v~~ 72 (76)
T PF08032_consen 7 AVEEALKSGPRIKKLFVTEEKADKRIKEILKLAKKKGIPVYEV--SKKVLDKLSDTENHQGVVAVVKP 72 (76)
T ss_dssp HHHHHHHCTGGEEEEEEETT---CCTHHHHHHHHHCT-EEEEE---HHHHHHCTTTSS-TTEEEEEE-
T ss_pred HHHHHHcCCCCccEEEEEcCccchhHHHHHHHHHHcCCeEEEe--CHHHHHHHcCCCCCCeEEEEEeC
Confidence 5777777764 333343333 2357888888889999877 67889999976655567777653
No 23
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=68.43 E-value=16 Score=29.55 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=52.3
Q ss_pred HHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEEeccchhHHHHHHHHhhCCcEE-EEccCcchhh----hhhCCCcce
Q psy16179 50 TIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLAKTGVH-HYTGNNIELG----TACGKYFRV 124 (145)
Q Consensus 50 ~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~kVPV~-~y~Gtn~ELG----~AcGK~FRV 124 (145)
|.-+.||+++--. .+++.+..= .+++|+|.+++.-++..|.+.++|+. .|.|.-.++= .-.+|++..
T Consensus 24 tiatgGklf~ev~-------e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~k 95 (152)
T COG4087 24 TIATGGKLFSEVS-------ETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYEK 95 (152)
T ss_pred EEccCcEEcHhhH-------HHHHHHHHh-heEEEecCCcchHHHHHHHHcCCceeeeecccCHHHHHHHHHHhcCCCcE
Confidence 4445566665544 344444443 67999999999999999999999975 3445443332 234667665
Q ss_pred EEEEEecCCchHHHhc
Q psy16179 125 CTLSITDAGDSDIIRS 140 (145)
Q Consensus 125 SvLAItD~G~SdIL~~ 140 (145)
+++| -.|..|++..
T Consensus 96 -~vmV-GnGaND~laL 109 (152)
T COG4087 96 -VVMV-GNGANDILAL 109 (152)
T ss_pred -EEEe-cCCcchHHHh
Confidence 4444 5577776644
No 24
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.55 E-value=11 Score=26.42 Aligned_cols=39 Identities=10% Similarity=-0.029 Sum_probs=30.6
Q ss_pred HHhhhcCCCeEEEE-----eccchhHHHHHHHHhhCCcEEEEccCc
Q psy16179 71 FLSKMQCPNSVWVL-----SCVYRKSEIEYYAMLAKTGVHHYTGNN 111 (145)
Q Consensus 71 VlkaiK~gkAkLVI-----aP~ntKkkIEyyAkL~kVPV~~y~Gtn 111 (145)
+...++ +|.+|| ++-+....+...|+.+++|++...+.+
T Consensus 42 l~~~i~--~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~ 85 (97)
T PF10087_consen 42 LPSKIK--KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRG 85 (97)
T ss_pred HHHhcC--CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCC
Confidence 446666 566666 888889999999999999999886443
No 25
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=61.27 E-value=20 Score=25.37 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=32.9
Q ss_pred HHHhhhcCCCeEEEE-eccch-----hHHHHHHHHhhCCcEEEEccCcchhhhh
Q psy16179 70 SFLSKMQCPNSVWVL-SCVYR-----KSEIEYYAMLAKTGVHHYTGNNIELGTA 117 (145)
Q Consensus 70 ~VlkaiK~gkAkLVI-aP~nt-----KkkIEyyAkL~kVPV~~y~Gtn~ELG~A 117 (145)
++...++.|+..+|| .|... -..+...|-.++||+. ++.+...+
T Consensus 58 ~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~----T~~~ta~a 107 (110)
T cd01424 58 NIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYF----TTLDTARA 107 (110)
T ss_pred hHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEE----ecHHHHHH
Confidence 477888999999999 45432 2578899999999996 44555443
No 26
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=58.70 E-value=56 Score=22.32 Aligned_cols=58 Identities=14% Similarity=-0.016 Sum_probs=44.7
Q ss_pred hHhhHHHHHhhhcCCCeEEEEeccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCC
Q psy16179 64 EIHLCLSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 64 ~i~~~~~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
++..+-...++.+..++.+|..+.+..++++.+...++.|.-.+.....++....|-.
T Consensus 44 ~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 101 (124)
T PF00578_consen 44 ELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIE 101 (124)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCE
T ss_pred chhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCc
Confidence 3444445667778878888886667777999999999988877866788888888775
No 27
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=58.62 E-value=69 Score=26.17 Aligned_cols=66 Identities=6% Similarity=-0.055 Sum_probs=46.6
Q ss_pred eeechhhhHhhHHHHHhhhcCCCeEEEE---eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEecC
Q psy16179 57 LFRNQEMEIHLCLSFLSKMQCPNSVWVL---SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDA 132 (145)
Q Consensus 57 ~~~G~~~~i~~~~~VlkaiK~gkAkLVI---aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD~ 132 (145)
++.|.. .|..+++++ -++.+ .......++..++...++|++.. +..+|-+.+|....-+++++.++
T Consensus 3 ~i~G~~-------~v~eal~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~l~~l~~~~~~qGv~a~~~~ 71 (237)
T TIGR00186 3 YLYGKN-------AVLEALLNQ-QRVFILKGLESKRLKKLIQLAKKQGINIQLV--DRQKLDQLTKGGNHQGIAAKVKP 71 (237)
T ss_pred EEEehH-------HHHHHHhCC-CEEEEEecCcchHHHHHHHHHHHcCCcEEEe--CHHHHHHHhCCCCCCeEEEEEec
Confidence 567777 677788877 34444 22234566777787778999776 67899999987656668888874
No 28
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=57.47 E-value=25 Score=25.26 Aligned_cols=37 Identities=16% Similarity=-0.040 Sum_probs=28.9
Q ss_pred HHHhhhcC-CCeEEEE-ecc-ch-------hHHHHHHHHhhCCcEEE
Q psy16179 70 SFLSKMQC-PNSVWVL-SCV-YR-------KSEIEYYAMLAKTGVHH 106 (145)
Q Consensus 70 ~VlkaiK~-gkAkLVI-aP~-nt-------KkkIEyyAkL~kVPV~~ 106 (145)
++...++. |+..+|| .|. .. =..|...|..++||+..
T Consensus 58 ~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 58 TVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 57888999 9999999 443 21 35788899999999853
No 29
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=57.16 E-value=29 Score=24.18 Aligned_cols=36 Identities=8% Similarity=-0.031 Sum_probs=27.0
Q ss_pred HHHhhhcCCCeEEEE-eccc-------hhHHHHHHHHhhCCcEE
Q psy16179 70 SFLSKMQCPNSVWVL-SCVY-------RKSEIEYYAMLAKTGVH 105 (145)
Q Consensus 70 ~VlkaiK~gkAkLVI-aP~n-------tKkkIEyyAkL~kVPV~ 105 (145)
++...++.|+..||| .|.. .-..|+..|..++||+.
T Consensus 51 ~i~~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 QIMDLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 478999999999999 2222 23456888999999975
No 30
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=54.44 E-value=22 Score=27.46 Aligned_cols=37 Identities=5% Similarity=-0.154 Sum_probs=28.9
Q ss_pred HHHhhhcCCCeEEEE-ec--cch------hHHHHHHHHhhCCcEEE
Q psy16179 70 SFLSKMQCPNSVWVL-SC--VYR------KSEIEYYAMLAKTGVHH 106 (145)
Q Consensus 70 ~VlkaiK~gkAkLVI-aP--~nt------KkkIEyyAkL~kVPV~~ 106 (145)
++...|+.|+..+|| .| ... -..|...|..++||+..
T Consensus 66 ~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T 111 (142)
T PRK05234 66 QIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVAT 111 (142)
T ss_pred hHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEc
Confidence 578899999999999 55 222 23788889999999844
No 31
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=53.13 E-value=77 Score=22.25 Aligned_cols=53 Identities=9% Similarity=-0.003 Sum_probs=39.5
Q ss_pred HHHhhhcCCCeEEEEeccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCc
Q psy16179 70 SFLSKMQCPNSVWVLSCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYF 122 (145)
Q Consensus 70 ~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~F 122 (145)
.....++..+..+|-.+.+...++..|++.+++++..+.+...+++.+.|-..
T Consensus 48 ~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 100 (140)
T cd03017 48 DLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG 100 (140)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence 34455565566666556667889999999998888888787888888888654
No 32
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=50.53 E-value=85 Score=21.96 Aligned_cols=58 Identities=10% Similarity=-0.015 Sum_probs=40.4
Q ss_pred hHhhHHHHHhhhcCCCeEEEEeccchhHHHHHHHHhh-CCcEEEEccCcchhhhhhCCC
Q psy16179 64 EIHLCLSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLA-KTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 64 ~i~~~~~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~-kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
++.......++++.+.+.+|-.+.+...+...|+... +.++..+...+..++...|-.
T Consensus 41 ~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~ 99 (140)
T cd02971 41 ELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVL 99 (140)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCc
Confidence 3455555666776667777776666777788888877 777766766667888887754
No 33
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=48.06 E-value=80 Score=23.01 Aligned_cols=55 Identities=5% Similarity=0.007 Sum_probs=41.0
Q ss_pred hhHHHHHhhhcCCCeEEEEeccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCC
Q psy16179 66 HLCLSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGK 120 (145)
Q Consensus 66 ~~~~~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK 120 (145)
..+.+..++++..++.+|-.+.+...++..|++..+++.-.+.+.+.++++..|-
T Consensus 51 ~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 105 (154)
T PRK09437 51 CGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGV 105 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCC
Confidence 3344456667666676655666778999999999999877777778888888874
No 34
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=46.42 E-value=1e+02 Score=21.66 Aligned_cols=57 Identities=12% Similarity=0.041 Sum_probs=38.9
Q ss_pred HhhHHHHHhhhcCCCeEEEEeccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCC
Q psy16179 65 IHLCLSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 65 i~~~~~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
+.......++.+...+.+|..+.+...+...++...+.++-.+...+.++..+.|-.
T Consensus 43 ~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~ 99 (149)
T cd02970 43 LRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLV 99 (149)
T ss_pred HHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCce
Confidence 344444556666666777664444555666788888888888877788888888863
No 35
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=44.26 E-value=19 Score=25.84 Aligned_cols=44 Identities=11% Similarity=-0.131 Sum_probs=32.3
Q ss_pred HHHhhhcCCCeEEEE-eccchh-------HHHHHHHHhhCCcEEEEccCcchhhhh
Q psy16179 70 SFLSKMQCPNSVWVL-SCVYRK-------SEIEYYAMLAKTGVHHYTGNNIELGTA 117 (145)
Q Consensus 70 ~VlkaiK~gkAkLVI-aP~ntK-------kkIEyyAkL~kVPV~~y~Gtn~ELG~A 117 (145)
.++..++.|+..+|| .|...+ ..+...|..++||++ |+.++..+
T Consensus 62 ~i~~~i~~~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i----T~~~~a~~ 113 (116)
T cd01423 62 SLRELLAEGKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI----TNPKCAKL 113 (116)
T ss_pred hHHHHHHcCCceEEEECCCCCCCccccCcEeeehhhHhhCCccc----ccHHHHHH
Confidence 467888899999999 554322 457888999999994 56666554
No 36
>PRK09932 glycerate kinase II; Provisional
Probab=43.99 E-value=71 Score=28.88 Aligned_cols=75 Identities=11% Similarity=-0.025 Sum_probs=47.7
Q ss_pred hCceeechhhhHhhHHHHHhhhcCCCeEEEEe----------ccchhHHHHHHHHhhCCcEEEEccC-cchhhhhhCCCc
Q psy16179 54 LSKLFRNQEMEIHLCLSFLSKMQCPNSVWVLS----------CVYRKSEIEYYAMLAKTGVHHYTGN-NIELGTACGKYF 122 (145)
Q Consensus 54 aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVIa----------P~ntKkkIEyyAkL~kVPV~~y~Gt-n~ELG~AcGK~F 122 (145)
.+++.+|.+ .+...+.....++ .|.|||+ ..-.=..+-..|+.|++|++.+.|+ ..+.-..--..|
T Consensus 262 ~a~l~~G~d-~v~~~~~l~~~l~--~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~~~~~~~~~~~g~ 338 (381)
T PRK09932 262 NADIKPGIE-IVLNAVNLEQAVQ--GAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGI 338 (381)
T ss_pred CCEEccHHH-HHHHhcChHHHhc--cCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEecccCCChHHHHhcCc
Confidence 477888877 4455555667777 5889991 1112346777899999999999887 223222222224
Q ss_pred ceEEEEEecC
Q psy16179 123 RVCTLSITDA 132 (145)
Q Consensus 123 RVSvLAItD~ 132 (145)
.. +++|.+.
T Consensus 339 ~~-~~~i~~~ 347 (381)
T PRK09932 339 DA-VFSILPR 347 (381)
T ss_pred eE-EEEcCCC
Confidence 43 7777765
No 37
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=42.96 E-value=62 Score=22.11 Aligned_cols=36 Identities=8% Similarity=-0.089 Sum_probs=27.8
Q ss_pred HHHhhhcCCCeEEEE-ecc--ch-----hHHHHHHHHhhCCcEE
Q psy16179 70 SFLSKMQCPNSVWVL-SCV--YR-----KSEIEYYAMLAKTGVH 105 (145)
Q Consensus 70 ~VlkaiK~gkAkLVI-aP~--nt-----KkkIEyyAkL~kVPV~ 105 (145)
.+++.++.|+..+|| .|. .. -..|+..|..++||+.
T Consensus 46 ~i~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 46 AILDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHhcCCCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 478899999999999 332 11 3478889999999974
No 38
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=42.78 E-value=61 Score=23.79 Aligned_cols=37 Identities=3% Similarity=-0.223 Sum_probs=29.2
Q ss_pred HHHhhhcCCCeEEEE-ecc--ch------hHHHHHHHHhhCCcEEE
Q psy16179 70 SFLSKMQCPNSVWVL-SCV--YR------KSEIEYYAMLAKTGVHH 106 (145)
Q Consensus 70 ~VlkaiK~gkAkLVI-aP~--nt------KkkIEyyAkL~kVPV~~ 106 (145)
+++..++.|+..+|| .|+ .. -..|+..|..++||+..
T Consensus 61 ~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 61 QIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLAT 106 (115)
T ss_pred HHHHHHHcCceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEE
Confidence 588999999999999 443 21 35788889999999853
No 39
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=42.66 E-value=95 Score=27.13 Aligned_cols=59 Identities=7% Similarity=0.018 Sum_probs=38.6
Q ss_pred eeechhhhHhhHHHHHhhh----cCCCeEE--EEe----ccchhHHHHHHHHhhCCcEEEEccCcchhh
Q psy16179 57 LFRNQEMEIHLCLSFLSKM----QCPNSVW--VLS----CVYRKSEIEYYAMLAKTGVHHYTGNNIELG 115 (145)
Q Consensus 57 ~~~G~~~~i~~~~~Vlkai----K~gkAkL--VIa----P~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG 115 (145)
+.|||+|+|-+.=++.+++ ++|.++| +|+ .++.+..++.+|...++|+..+=..+.+.-
T Consensus 148 VtSge~mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~e~~~v~~fa~~~g~~i~~~iPr~~~v~ 216 (273)
T PF00142_consen 148 VTSGEFMSLYAANNICKAIKNFADRGGARLGGIICNSRNVDDEEEIVEDFAERIGTPIIAFIPRSEIVQ 216 (273)
T ss_dssp EEBSSHHHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTTHHHHHHHHHHHHTSEEEEEE---HHHH
T ss_pred EecCcHHHHHHHHHHHHHHHHHhccCCCceEEEEecCCCCCCchHHHHHHHHHcCCcEEEecCchHHHH
Confidence 5799999885444433333 3566665 342 378899999999999999998855544443
No 40
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=36.79 E-value=1.5e+02 Score=21.00 Aligned_cols=58 Identities=12% Similarity=-0.007 Sum_probs=40.0
Q ss_pred hHhhHHHHHhhhcCCCeEEEEeccchhHHHHHHHHhhCCcEEEEccCc--chhhhhhCCC
Q psy16179 64 EIHLCLSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLAKTGVHHYTGNN--IELGTACGKY 121 (145)
Q Consensus 64 ~i~~~~~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~kVPV~~y~Gtn--~ELG~AcGK~ 121 (145)
.+.......++.+..+..+|-.+.+...+++.|++.++.++..+.+.+ .++++..|-.
T Consensus 47 ~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~ 106 (149)
T cd03018 47 ELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVF 106 (149)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCc
Confidence 344444555666666677666666677788889998888887776655 6777776654
No 41
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=35.75 E-value=40 Score=31.72 Aligned_cols=40 Identities=8% Similarity=0.108 Sum_probs=33.7
Q ss_pred HHhhhcCCCeEEEE---------eccchhHHHHHHHHhhCCcEEEEccC
Q psy16179 71 FLSKMQCPNSVWVL---------SCVYRKSEIEYYAMLAKTGVHHYTGN 110 (145)
Q Consensus 71 VlkaiK~gkAkLVI---------aP~ntKkkIEyyAkL~kVPV~~y~Gt 110 (145)
++..-++|+-.||| -+.--|.-+..||+.|+|+++.|-..
T Consensus 101 ~LT~~~kGRy~lII~ENl~kYlnld~wNR~LLdkYC~ey~VGiIgF~~~ 149 (487)
T PF12062_consen 101 VLTDNDKGRYSLIIFENLLKYLNLDSWNRELLDKYCREYGVGIIGFFKA 149 (487)
T ss_pred ccccCCCCcEEEEEehhHHHHcCChHHHHHHHHHHhHccCccEEEEecC
Confidence 55566789999999 77878999999999999999888544
No 42
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=34.61 E-value=97 Score=27.38 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=38.1
Q ss_pred HHHHHhhhcCCCeEEEEeccchhHHHHHHHHhhCC--cEEEEccCcch
Q psy16179 68 CLSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLAKT--GVHHYTGNNIE 113 (145)
Q Consensus 68 ~~~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~kV--PV~~y~Gtn~E 113 (145)
...+++.++.....+|+|+.-+..+++++....++ |++.++|.-+-
T Consensus 23 a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~p~I~eNGA~I~ 70 (302)
T PRK12702 23 ARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEHPFICEDGSAIY 70 (302)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEEeCCcEEE
Confidence 34678889988999999999999999999888866 78888886654
No 43
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=34.44 E-value=86 Score=25.11 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=36.0
Q ss_pred HHHHhhhcCCCeEEEEeccchhHHHHHHHHhhCC--cEEEEccCcchh
Q psy16179 69 LSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLAKT--GVHHYTGNNIEL 114 (145)
Q Consensus 69 ~~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~kV--PV~~y~Gtn~EL 114 (145)
..+++.++.....+|+|+.-...++..+....++ |++.|+|.-.-.
T Consensus 21 ~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~~~I~~NGa~I~~ 68 (225)
T TIGR02461 21 REALEELKDLGFPIVFVSSKTRAEQEYYREELGVEPPFIVENGGAIFI 68 (225)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCcEEEcCCcEEEe
Confidence 3577778877888999888888888888876664 788898877644
No 44
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=34.37 E-value=38 Score=30.62 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=40.9
Q ss_pred eeechhhhhhhhhhcchhhhhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhh--C
Q psy16179 28 LELPVDVWTSIARISNKVLVLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLA--K 101 (145)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~--k 101 (145)
-+-|++.|.-| |+-|...-|+. +|+| .+-+++. +|| |.+++.+=|..+|+.+ .
T Consensus 83 ~~~pl~~~~~i-RvKnE~~tl~~-------------si~S---~Lpai~~----gVI~yNdc~D~t~Eiil~fckkyP~f 141 (347)
T PF06306_consen 83 PKSPLNPWAFI-RVKNEAMTLAE-------------SIES---ILPAIDE----GVIGYNDCTDGTEEIILEFCKKYPSF 141 (347)
T ss_pred CCCCCCcceEE-EEcchhhhHHH-------------HHHH---HHHHHhc----cEEEeecCCCCHHHHHHHHHHhCccc
Confidence 34577888644 55555444433 2334 5567775 888 9999999999999998 7
Q ss_pred CcEEEE
Q psy16179 102 TGVHHY 107 (145)
Q Consensus 102 VPV~~y 107 (145)
+|+.+.
T Consensus 142 ip~~Yp 147 (347)
T PF06306_consen 142 IPIKYP 147 (347)
T ss_pred ccccCc
Confidence 887443
No 45
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=33.97 E-value=93 Score=28.93 Aligned_cols=81 Identities=15% Similarity=0.072 Sum_probs=48.0
Q ss_pred CCceeeeeechhhhhhhhhhcchhhhhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHH
Q psy16179 22 PATTLSLELPVDVWTSIARISNKVLVLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYA 97 (145)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyA 97 (145)
+.-..-++||.|||..-+..... .+.....-+-.......|+..+..+++.|+ --|++ .-.+.-.++..+|
T Consensus 150 rpGpv~i~iP~Dv~~~~~~~~~~---~~~~~~~~~p~~~~~~~i~~aa~~L~~Akr--PvIl~G~G~~~a~a~~~l~~la 224 (550)
T COG0028 150 RPGPVVVDLPKDVLAAEAEEPGP---EPAILPPYRPAPPPPEAIRKAAELLAEAKR--PVILAGGGVRRAGASEELRELA 224 (550)
T ss_pred CCceEEEEcChhHhhcccccccc---cccccccCCCCCCcHHHHHHHHHHHHhCCC--CEEEECCCccccccHHHHHHHH
Confidence 33456789999999987654432 111111111111111457777776666664 22222 4555668899999
Q ss_pred HhhCCcEEEE
Q psy16179 98 MLAKTGVHHY 107 (145)
Q Consensus 98 kL~kVPV~~y 107 (145)
...++||..-
T Consensus 225 e~~~~Pv~~t 234 (550)
T COG0028 225 EKLGAPVVTT 234 (550)
T ss_pred HHHCCCEEEc
Confidence 9999998654
No 46
>cd07987 LPLAT_MGAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.
Probab=33.38 E-value=1.5e+02 Score=22.99 Aligned_cols=62 Identities=6% Similarity=0.019 Sum_probs=37.4
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEEeccchhH-----------------HHHHHHHhhCCcE---EE
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVLSCVYRKS-----------------EIEYYAMLAKTGV---HH 106 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVIaP~ntKk-----------------kIEyyAkL~kVPV---~~ 106 (145)
+++..++.-........ +..+.+++|+. ++|.|+-+++ =+-..|..+++|| +.
T Consensus 64 ~~~~~~~~~g~i~~~r~------~~~~~L~~G~~-l~ifPeGtr~~~~~~~~~~~~~~~~~~G~~~lA~~~~~pIvPv~~ 136 (212)
T cd07987 64 GLRDLLRRLGAVPGSRE------NCVRLLREGEL-VLIFPGGAREALKSKREEYYLLWKKRKGFARLALRAGAPIVPVFT 136 (212)
T ss_pred cHHHHHHHcCCcccCHH------HHHHHhcCCCE-EEEEcCCHHHHhccCCCeEEEEECCCcCHHHHHHHcCCCeEeEEE
Confidence 34555555444444432 34567788886 5666666654 2667888889885 45
Q ss_pred EccCcchhhh
Q psy16179 107 YTGNNIELGT 116 (145)
Q Consensus 107 y~Gtn~ELG~ 116 (145)
+ |.+.-+..
T Consensus 137 ~-G~~~~~~~ 145 (212)
T cd07987 137 F-GEEELFRV 145 (212)
T ss_pred e-CcHHHHhh
Confidence 5 66666653
No 47
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=32.57 E-value=95 Score=25.36 Aligned_cols=40 Identities=13% Similarity=-0.113 Sum_probs=29.0
Q ss_pred HHHhhhcCCC--eEEEE-eccchhHHHHHHHHhhCCcEEEEcc
Q psy16179 70 SFLSKMQCPN--SVWVL-SCVYRKSEIEYYAMLAKTGVHHYTG 109 (145)
Q Consensus 70 ~VlkaiK~gk--AkLVI-aP~ntKkkIEyyAkL~kVPV~~y~G 109 (145)
.+++++++|+ ++++. .+.+..-....+|..+++|++.++-
T Consensus 15 al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 15 AIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPK 57 (207)
T ss_pred HHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEecc
Confidence 4667788885 34444 5555667778899999999998854
No 48
>PF08228 RNase_P_pop3: RNase P subunit Pop3; InterPro: IPR013241 This family of fungal proteins form a subunit of RNase P, the ribonucleoprotein enzyme that cleaves the leader sequence of precursor tRNAs to generate mature tRNAs. The structure of Pop3 has been assigned the L7Ae/L30e fold []. This RNA-binding fold is also present in human RNase P subunit Rpp38, raising the possibility that Pop3p and Rpp38 are functional homologues.
Probab=31.56 E-value=1.7e+02 Score=23.49 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=51.4
Q ss_pred ceeechhhhHhhHHHHHhhhcCCCe--EEEE-----eccchhHHHHHHHHhhC--CcEEEEc-cCcchhhhhhCCCcceE
Q psy16179 56 KLFRNQEMEIHLCLSFLSKMQCPNS--VWVL-----SCVYRKSEIEYYAMLAK--TGVHHYT-GNNIELGTACGKYFRVC 125 (145)
Q Consensus 56 k~~~G~~~~i~~~~~VlkaiK~gkA--kLVI-----aP~ntKkkIEyyAkL~k--VPV~~y~-Gtn~ELG~AcGK~FRVS 125 (145)
++..|+. ++.+.+.+..+ .+|+ -|+-.-+.|=..|..++ |.++-++ |+..-|+.+.|-+ |+|
T Consensus 55 ~v~~GfN-------si~~~Le~~~~~~~~vFVcr~D~ps~L~~h~P~Lva~as~~vrLV~Lpkgs~~rLs~aLgi~-r~g 126 (158)
T PF08228_consen 55 GVTVGFN-------SIVRYLECQASDNVYVFVCRSDQPSILTSHFPQLVATASKSVRLVQLPKGSEARLSEALGIP-RVG 126 (158)
T ss_pred cEEEehH-------HHHHHHhcccCCCeEEEEECCCCcHHHHHHHHHHHHhccCcceEEeCChhHHHHHHHHhCCC-Ccc
Confidence 5678887 44455543222 2444 45556778888888887 7766554 6777899999998 889
Q ss_pred EEEEecC-----CchHHHhc
Q psy16179 126 TLSITDA-----GDSDIIRS 140 (145)
Q Consensus 126 vLAItD~-----G~SdIL~~ 140 (145)
+++|.+. ++.+.+++
T Consensus 127 ~l~v~~~~~~~~~L~~~i~~ 146 (158)
T PF08228_consen 127 ILAVRADAPGAKSLVDLIRS 146 (158)
T ss_pred EEEEecCCcccHHHHHHHHh
Confidence 9999753 34445544
No 49
>KOG3282|consensus
Probab=31.44 E-value=82 Score=26.36 Aligned_cols=35 Identities=14% Similarity=-0.018 Sum_probs=27.8
Q ss_pred hhcCCCeEEEE-ecc-chhHHHHHHHHhhCCcEEEEc
Q psy16179 74 KMQCPNSVWVL-SCV-YRKSEIEYYAMLAKTGVHHYT 108 (145)
Q Consensus 74 aiK~gkAkLVI-aP~-ntKkkIEyyAkL~kVPV~~y~ 108 (145)
=-++|++|+|+ |++ .+-.++.-.|+..+++.|.+.
T Consensus 119 We~~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i~ 155 (190)
T KOG3282|consen 119 WENCGQAKIVVKAESEEELMELQKDAKKLGLYTHLIQ 155 (190)
T ss_pred HHHcCCceEEEEcCCHHHHHHHHHHHHHcCCcEEEEE
Confidence 34689999999 776 566777777888899988883
No 50
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=31.33 E-value=2.9e+02 Score=22.78 Aligned_cols=68 Identities=6% Similarity=-0.078 Sum_probs=43.5
Q ss_pred ceeechhhhHhhHHHHHhhhcC-CC-e-EEEEecc---chhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEE
Q psy16179 56 KLFRNQEMEIHLCLSFLSKMQC-PN-S-VWVLSCV---YRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSI 129 (145)
Q Consensus 56 k~~~G~~~~i~~~~~VlkaiK~-gk-A-kLVIaP~---ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAI 129 (145)
.+..|.. .|+.+++. ++ . +|++... ..-+++..+|...+++++.. +..+|-+.++....-+++++
T Consensus 3 ~~i~G~~-------~v~eal~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v--~~~~l~~ls~~~~~qGv~a~ 73 (244)
T PRK11181 3 EIIYGIH-------AVQALLERAPERFIEVFVLKGREDKRLLPLINELEAQGIVIQLA--NRQTLDEKAEGAVHQGIIAR 73 (244)
T ss_pred cEEEehH-------HHHHHHhCCCCceeEEEEECCCcchHHHHHHHHHHHcCCcEEEe--CHHHHhhhhcCCCCceEEEE
Confidence 3567777 56677764 22 2 3444222 12245555666668887665 78999999987666678888
Q ss_pred ecC
Q psy16179 130 TDA 132 (145)
Q Consensus 130 tD~ 132 (145)
.++
T Consensus 74 ~~~ 76 (244)
T PRK11181 74 VKP 76 (244)
T ss_pred Eec
Confidence 875
No 51
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=31.10 E-value=78 Score=29.17 Aligned_cols=64 Identities=13% Similarity=0.042 Sum_probs=46.9
Q ss_pred HHHhhCcee--echhhhHhhHHHHHhhhcCCCeEEEE---eccchhHHHHHHHHhh----CCcEEEEccCcch
Q psy16179 50 TIITLSKLF--RNQEMEIHLCLSFLSKMQCPNSVWVL---SCVYRKSEIEYYAMLA----KTGVHHYTGNNIE 113 (145)
Q Consensus 50 ~a~~aGk~~--~G~~~~i~~~~~VlkaiK~gkAkLVI---aP~ntKkkIEyyAkL~----kVPV~~y~Gtn~E 113 (145)
+-|.-+-+. +|.+..++.++.=+.+-+.+++-.|+ .++..+.++|--|+.+ ++||+.++++..+
T Consensus 68 tdl~E~Di~~~~g~~~~L~~~i~ei~~~~~p~~ifv~~TC~t~iIGdDle~va~~~~~~~gipVV~v~~~Gf~ 140 (457)
T CHL00073 68 AELEEGDISAQLNDYEELKRLCLQIKKDRNPSVIVWIGTCTTEIIKMDLEGMAPKLEAEIGIPIVVARANGLD 140 (457)
T ss_pred cccCchhhhhhcCCHHHHHHHHHHHHHhCCCCEEEEEccCcHHhhccCHHHHHHHHHHhhCCCEEEEeCCCcc
Confidence 566667777 67666666555534444467777777 6778899999998744 8999999887777
No 52
>PRK10342 glycerate kinase I; Provisional
Probab=30.50 E-value=1.5e+02 Score=26.77 Aligned_cols=74 Identities=11% Similarity=0.027 Sum_probs=46.8
Q ss_pred hCceeechhhhHhhHHHHHhhhcCCCeEEEEecc----------chhHHHHHHHHhhCCcEEEEccCcchhhh--hhCCC
Q psy16179 54 LSKLFRNQEMEIHLCLSFLSKMQCPNSVWVLSCV----------YRKSEIEYYAMLAKTGVHHYTGNNIELGT--ACGKY 121 (145)
Q Consensus 54 aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVIaP~----------ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~--AcGK~ 121 (145)
.+++.+|.+ .+-..+...+.++ .|.|||+-+ -.=..+-..|+.|++|++.+.|+- +.+. .-...
T Consensus 262 ga~l~~G~d-~v~~~~~l~~~l~--~ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~~-~~~~~~~~~~g 337 (381)
T PRK10342 262 GAELKSGIE-IVTTALNLEEHIH--DCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSL-TDDVGVVHQHG 337 (381)
T ss_pred CCEECCHHH-HHHHhcCHHHHhc--cCCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEeccc-CCChHHHHhcC
Confidence 477888877 3444445667777 588999211 122467778999999999998862 2221 22222
Q ss_pred cceEEEEEecC
Q psy16179 122 FRVCTLSITDA 132 (145)
Q Consensus 122 FRVSvLAItD~ 132 (145)
|.. +.+|.+.
T Consensus 338 ~~a-v~~i~~~ 347 (381)
T PRK10342 338 IDA-VFSVLTS 347 (381)
T ss_pred ceE-EEEcCCC
Confidence 443 6777764
No 53
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=30.07 E-value=2.2e+02 Score=20.82 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=40.2
Q ss_pred hHHHHhh-CceeechhhhHhhHHHHHhhhcCCCeEEEEeccc-------hh----------------HHHHHHHHhhCCc
Q psy16179 48 LKTIITL-SKLFRNQEMEIHLCLSFLSKMQCPNSVWVLSCVY-------RK----------------SEIEYYAMLAKTG 103 (145)
Q Consensus 48 ~k~a~~a-Gk~~~G~~~~i~~~~~VlkaiK~gkAkLVIaP~n-------tK----------------kkIEyyAkL~kVP 103 (145)
++..-+. |+.+.|.+ .|.++++.|.++-++.+++ .| .++-..++..+..
T Consensus 12 ~~~l~k~~~~~~yG~~-------eV~~Al~~GaV~~LlI~d~l~~~~~~~r~~~~~~~~~~~~~~~i~~l~~~a~~~g~~ 84 (113)
T PF03465_consen 12 FEELAKDPGLAVYGIE-------EVKKALEMGAVETLLISDDLFRSRDVERCKCPECGGELEVVELIEELIELAEQSGAK 84 (113)
T ss_dssp HHHHHTTCSSEEESHH-------HHHHHHHTT-EEEEEEEHHHHTESCHHHHHSTTTHSEEEEEEHHHHHHHHHHHTTSE
T ss_pred HHHHhhCCCcEEECHH-------HHHHHHHhCCCcEEEEecccccccceeccccccccchhhhHHHHHHHHHHHHHcCCE
Confidence 3444444 79999999 7999999999988882111 22 3445556667999
Q ss_pred EEEEccCcchhhhh
Q psy16179 104 VHHYTGNNIELGTA 117 (145)
Q Consensus 104 V~~y~Gtn~ELG~A 117 (145)
+.+++. +.+-|.-
T Consensus 85 v~iis~-~~e~G~~ 97 (113)
T PF03465_consen 85 VEIISS-EHEEGEQ 97 (113)
T ss_dssp EEEE-T-TSHHHHH
T ss_pred EEEEcC-CCccHHH
Confidence 999954 4444443
No 54
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=27.85 E-value=75 Score=25.45 Aligned_cols=48 Identities=8% Similarity=-0.036 Sum_probs=34.2
Q ss_pred chhhhHhhHHHHHhhhcCCCeEEEE-eccchhHHHHHHHHhhCCcEEEE
Q psy16179 60 NQEMEIHLCLSFLSKMQCPNSVWVL-SCVYRKSEIEYYAMLAKTGVHHY 107 (145)
Q Consensus 60 G~~~~i~~~~~VlkaiK~gkAkLVI-aP~ntKkkIEyyAkL~kVPV~~y 107 (145)
|.+-+.+.+..+.+.+|.++++.|+ -|...++-.+..++..++|++..
T Consensus 180 ~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~l 228 (256)
T PF01297_consen 180 GEEPSPKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYL 228 (256)
T ss_dssp SSSS-HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEES
T ss_pred ccCCCHHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEe
Confidence 4445566677888999999999999 45556666888899999999666
No 55
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=27.44 E-value=1.5e+02 Score=25.47 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=31.0
Q ss_pred eeechhhhHhhHHHHHhhhcCCC--eEEEEeccchhHHHHHHHHhhCCcEEEEc
Q psy16179 57 LFRNQEMEIHLCLSFLSKMQCPN--SVWVLSCVYRKSEIEYYAMLAKTGVHHYT 108 (145)
Q Consensus 57 ~~~G~~~~i~~~~~VlkaiK~gk--AkLVIaP~ntKkkIEyyAkL~kVPV~~y~ 108 (145)
++||.-. +.-.++.+++.|+ +++++.-.|. .+...+|..+++|+++++
T Consensus 99 l~Sg~g~---nl~al~~~~~~~~l~~~i~~visn~-~~~~~~A~~~gIp~~~~~ 148 (289)
T PRK13010 99 MVSKFDH---CLNDLLYRWRMGELDMDIVGIISNH-PDLQPLAVQHDIPFHHLP 148 (289)
T ss_pred EEeCCCc---cHHHHHHHHHCCCCCcEEEEEEECC-hhHHHHHHHcCCCEEEeC
Confidence 5677752 2224777888875 5666622222 244688999999999875
No 56
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=27.21 E-value=2.4e+02 Score=20.46 Aligned_cols=45 Identities=11% Similarity=-0.093 Sum_probs=27.0
Q ss_pred hhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEE
Q psy16179 63 MEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHY 107 (145)
Q Consensus 63 ~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y 107 (145)
..|..|+.-+..-..+..++|+ .++.+.+-++.++..++.+++.+
T Consensus 11 ~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~ 59 (214)
T cd04196 11 KYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILI 59 (214)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEE
Confidence 3455555433332333566777 55677888888888776555555
No 57
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.96 E-value=1.3e+02 Score=24.67 Aligned_cols=48 Identities=10% Similarity=-0.029 Sum_probs=34.0
Q ss_pred chhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEE
Q psy16179 60 NQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHY 107 (145)
Q Consensus 60 G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y 107 (145)
|.+-+...+..+.+.+|..+++.|+ .++..-+.+...|+..++|+..+
T Consensus 187 ~~~ps~~~l~~l~~~ik~~~v~~if~e~~~~~k~~~~l~~la~~~~~~v~~l 238 (264)
T cd01020 187 ETEPSPADIAAFQNAIKNRQIDALIVNPQQASSATTNITGLAKRSGVPVVEV 238 (264)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEeCCCCCcHHHHHHHHHHHHcCCCEEee
Confidence 4444556677889999999999999 22222233546788899999776
No 58
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=26.37 E-value=1.7e+02 Score=23.54 Aligned_cols=39 Identities=8% Similarity=-0.176 Sum_probs=26.2
Q ss_pred HHHhhhcCCC--eEEEE-eccchhHHHHHHHHhhCCcEEEEc
Q psy16179 70 SFLSKMQCPN--SVWVL-SCVYRKSEIEYYAMLAKTGVHHYT 108 (145)
Q Consensus 70 ~VlkaiK~gk--AkLVI-aP~ntKkkIEyyAkL~kVPV~~y~ 108 (145)
.+++++++++ +.+++ .+.........+|..+++|++.++
T Consensus 17 ~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~ 58 (200)
T PRK05647 17 AIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLD 58 (200)
T ss_pred HHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEEC
Confidence 4566776664 44444 344334567889999999999874
No 59
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=26.25 E-value=2e+02 Score=22.59 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=31.7
Q ss_pred HHHHHhhhcCCCeEEEEeccc--------------------hhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEE
Q psy16179 68 CLSFLSKMQCPNSVWVLSCVY--------------------RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTL 127 (145)
Q Consensus 68 ~~~VlkaiK~gkAkLVIaP~n--------------------tKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvL 127 (145)
+...++...+..+.||+.|+. ....+...|+.+++.++. |...+... |+.|.. ++
T Consensus 21 i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~--G~~~~~~~--~~~yNs-~~ 95 (253)
T cd07583 21 VESLIEEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVA--GSVAEKEG--GKLYNT-AY 95 (253)
T ss_pred HHHHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEe--ceEEecCC--CcEEEE-EE
Confidence 333444445557788883332 345566677777766542 33221111 566664 55
Q ss_pred EEecCC
Q psy16179 128 SITDAG 133 (145)
Q Consensus 128 AItD~G 133 (145)
.|-+.|
T Consensus 96 ~i~~~G 101 (253)
T cd07583 96 VIDPDG 101 (253)
T ss_pred EECCCC
Confidence 555456
No 60
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.25 E-value=94 Score=26.43 Aligned_cols=73 Identities=11% Similarity=-0.002 Sum_probs=46.8
Q ss_pred echhhhHhhHHHHHhhhcCCCeEEEE--ecc----chhHHHHHHHHhhCCcEEEEccCcchh-------h-hhhCCCcce
Q psy16179 59 RNQEMEIHLCLSFLSKMQCPNSVWVL--SCV----YRKSEIEYYAMLAKTGVHHYTGNNIEL-------G-TACGKYFRV 124 (145)
Q Consensus 59 ~G~~~~i~~~~~VlkaiK~gkAkLVI--aP~----ntKkkIEyyAkL~kVPV~~y~Gtn~EL-------G-~AcGK~FRV 124 (145)
||++..+.+.++.+++++.|.+-.+. .|. ...+=+-+.|.++++|++.. +....= - ..+-+||.-
T Consensus 98 Ss~Kgg~~Alr~l~k~Lk~G~~i~itpDgPkGp~~~~~~Gii~LA~~sg~pi~pv-~~~~sr~~~lKsWDk~~IP~PFgk 176 (214)
T COG2121 98 SSNKGGISALRALLKALKQGKSIAITPDGPKGPVHKIGDGIIALAQKSGVPIIPV-GVATSRCWRLKTWDKTIIPLPFGK 176 (214)
T ss_pred cCCcchHHHHHHHHHHHhCCCcEEEcCCCCCCCceeccchhhHhhHhcCCCeEEE-EEeeeeeeeecccccccccCccce
Confidence 34677788999999999998875555 222 23466788999999998765 211100 0 122457776
Q ss_pred EEEEEecC
Q psy16179 125 CTLSITDA 132 (145)
Q Consensus 125 SvLAItD~ 132 (145)
+.+.+-++
T Consensus 177 ~~i~~geP 184 (214)
T COG2121 177 IKIVLGEP 184 (214)
T ss_pred eEEEecCc
Confidence 66665544
No 61
>PF09846 DUF2073: Uncharacterized protein conserved in archaea (DUF2073); InterPro: IPR012017 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.11 E-value=1.3e+02 Score=23.00 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=47.2
Q ss_pred HHHhhhcCCCeEEEE----eccchhHHHHHH------HHhhCCcEEEEccCc---chhhhhhCCCcceEEEEEecCCchH
Q psy16179 70 SFLSKMQCPNSVWVL----SCVYRKSEIEYY------AMLAKTGVHHYTGNN---IELGTACGKYFRVCTLSITDAGDSD 136 (145)
Q Consensus 70 ~VlkaiK~gkAkLVI----aP~ntKkkIEyy------AkL~kVPV~~y~Gtn---~ELG~AcGK~FRVSvLAItD~G~Sd 136 (145)
.++..+|.|+. +|+ .|++..+-||-- -.|+||.+..|+..+ -=||+..||..+. .+|=-|-|+
T Consensus 12 ~ILd~Vk~G~I-vVLE~GLtPeEe~~LIE~TM~eI~~d~F~GIEiesyp~~~~~~~f~~rl~gk~~~~---rlTVIGPAn 87 (104)
T PF09846_consen 12 LILDKVKDGNI-VVLEEGLTPEEESKLIEMTMTEIDPDEFSGIEIESYPSKEADKSFLGRLLGKKSRE---RLTVIGPAN 87 (104)
T ss_pred HHHhhcccCcE-EEEcCCCChHHHHHHHHHHHHhcCccccCceEEEecCcccccccHHHHHhCCCCCC---CeEEEccHH
Confidence 47788998764 444 676666666542 235688899997665 6799999998775 333346788
Q ss_pred HHhcCC
Q psy16179 137 IIRSMP 142 (145)
Q Consensus 137 IL~~l~ 142 (145)
.|+.+.
T Consensus 88 ~mktlk 93 (104)
T PF09846_consen 88 QMKTLK 93 (104)
T ss_pred HHHHHh
Confidence 777654
No 62
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=25.51 E-value=1.2e+02 Score=25.83 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=27.7
Q ss_pred HHhhhcCCCeEEEEeccchhHH-------------------HHHHHHhhCCcEEEE
Q psy16179 71 FLSKMQCPNSVWVLSCVYRKSE-------------------IEYYAMLAKTGVHHY 107 (145)
Q Consensus 71 VlkaiK~gkAkLVIaP~ntKkk-------------------IEyyAkL~kVPV~~y 107 (145)
.++.+|.|+..+.|+|+-+|+. +...|..+++|-|+|
T Consensus 107 ~~~lLk~G~~~i~IfPEGtR~r~~~~g~~~p~~Fd~~~~~~~~~La~~s~~p~hi~ 162 (235)
T cd07985 107 MQQLLNEGGQLIWVAPSGGRDRPDANGEWYPDPFDPSAVEMMRLLAQKSRVPTHLY 162 (235)
T ss_pred HHHHHHcCCeEEEEcCCCCCCCCCCCCCccCCccchHHHHHHHHHHHhcCCCceEE
Confidence 4456888887677888888874 667888889995555
No 63
>PRK00124 hypothetical protein; Validated
Probab=25.31 E-value=2.1e+02 Score=22.73 Aligned_cols=22 Identities=18% Similarity=-0.161 Sum_probs=20.5
Q ss_pred eccchhHHHHHHHHhhCCcEEEEc
Q psy16179 85 SCVYRKSEIEYYAMLAKTGVHHYT 108 (145)
Q Consensus 85 aP~ntKkkIEyyAkL~kVPV~~y~ 108 (145)
|| .|.++..-|..+++|+..+.
T Consensus 10 CP--Vk~~i~r~a~r~~i~v~~Va 31 (151)
T PRK00124 10 CP--VKDIIIRVAERHGIPVTLVA 31 (151)
T ss_pred Cc--HHHHHHHHHHHHCCeEEEEE
Confidence 77 99999999999999999984
No 64
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=25.12 E-value=1.4e+02 Score=21.08 Aligned_cols=43 Identities=12% Similarity=0.001 Sum_probs=23.3
Q ss_pred hhHHHHHhhhcCCCeEEEE-eccchhHHHHHHHHhhCCcEEEEccCcch
Q psy16179 66 HLCLSFLSKMQCPNSVWVL-SCVYRKSEIEYYAMLAKTGVHHYTGNNIE 113 (145)
Q Consensus 66 ~~~~~VlkaiK~gkAkLVI-aP~ntKkkIEyyAkL~kVPV~~y~Gtn~E 113 (145)
+.||. .-+++++..+|- .....|+++. +..|||++++.++...
T Consensus 54 ddci~--~~~~~~~~~~VaT~D~~Lr~~lr---~~~GvPvi~l~~~~~~ 97 (101)
T PF04900_consen 54 DDCIL--DLAGKNNKYIVATQDKELRRRLR---KIPGVPVIYLRRNVLI 97 (101)
T ss_pred HHHHH--HHhccCCeEEEEecCHHHHHHHh---cCCCCCEEEEECCEEE
Confidence 34444 455454543333 3333344433 3789999999765443
No 65
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=24.81 E-value=2.8e+02 Score=20.19 Aligned_cols=57 Identities=5% Similarity=-0.081 Sum_probs=39.9
Q ss_pred HhhHHHHHhhhcCCCeEEEE-eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCC
Q psy16179 65 IHLCLSFLSKMQCPNSVWVL-SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 65 i~~~~~VlkaiK~gkAkLVI-aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
+...-.+.++.+..+.++|- ..+..+.++..|....+.|...+...+.++.+..|-.
T Consensus 80 ~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 137 (173)
T PRK03147 80 MPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVG 137 (173)
T ss_pred HHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC
Confidence 33444455666655566555 5556778888888889999888877788888887753
No 66
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=24.44 E-value=2.4e+02 Score=19.30 Aligned_cols=61 Identities=10% Similarity=0.066 Sum_probs=39.8
Q ss_pred hhhcCCCeEEEE-eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEecCCc
Q psy16179 73 SKMQCPNSVWVL-SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGD 134 (145)
Q Consensus 73 kaiK~gkAkLVI-aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD~G~ 134 (145)
+.+...-..+.| ..+....+++.+++.++++.....+.+.++.+..|- ..+-++-|+|+|-
T Consensus 43 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i-~~~P~~~vid~~g 104 (123)
T cd03011 43 NQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGV-SVTPAIVIVDPGG 104 (123)
T ss_pred HHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCC-CcccEEEEEcCCC
Confidence 333333333444 555568888889998988877776777777776653 3444777888764
No 67
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam model pfam01385, and other proteins.
Probab=24.44 E-value=87 Score=20.88 Aligned_cols=23 Identities=26% Similarity=0.013 Sum_probs=19.2
Q ss_pred eccchhHHHHHHHHhhCCcEEEE
Q psy16179 85 SCVYRKSEIEYYAMLAKTGVHHY 107 (145)
Q Consensus 85 aP~ntKkkIEyyAkL~kVPV~~y 107 (145)
+-...+..++|+|..+|+++...
T Consensus 54 ~~~~~~~~l~yka~~~Gi~v~~v 76 (82)
T TIGR01766 54 SFRKLISKIKYKAEEYGIEVIEV 76 (82)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEe
Confidence 44457889999999999999876
No 68
>PRK14099 glycogen synthase; Provisional
Probab=24.42 E-value=1.9e+02 Score=25.98 Aligned_cols=55 Identities=13% Similarity=0.035 Sum_probs=36.8
Q ss_pred hHhhHHHHHhhhcCCCeEEEE---eccchhHHHHHHHHhhCCcEEEEccCcchhhhhh
Q psy16179 64 EIHLCLSFLSKMQCPNSVWVL---SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTAC 118 (145)
Q Consensus 64 ~i~~~~~VlkaiK~gkAkLVI---aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~Ac 118 (145)
-++..+..++.+.....+||| .++..+++++.++..++-.+..|-|.+.+|.+..
T Consensus 309 G~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~ 366 (485)
T PRK14099 309 GLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLI 366 (485)
T ss_pred cHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHH
Confidence 355566666666555688888 3334577888888776555656668778887754
No 69
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=24.23 E-value=1.5e+02 Score=21.84 Aligned_cols=43 Identities=16% Similarity=0.070 Sum_probs=24.9
Q ss_pred echhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhC
Q psy16179 59 RNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAK 101 (145)
Q Consensus 59 ~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~k 101 (145)
.++++.|..||.-+.+-.....+++| ..+++...++.+....+
T Consensus 6 ~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~ 52 (202)
T cd04185 6 YNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN 52 (202)
T ss_pred eCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc
Confidence 34555677777755544334556777 45566766666554433
No 70
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=23.84 E-value=1.3e+02 Score=21.02 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=36.5
Q ss_pred hhhcCCCeEEEE-eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCC
Q psy16179 73 SKMQCPNSVWVL-SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 73 kaiK~gkAkLVI-aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
.+++....+||+ ...+... ++.||...+.|.=.|...+.+|=++.|..
T Consensus 7 ~~l~~~gv~lv~I~~g~~~~-~~~f~~~~~~p~~ly~D~~~~lY~~lg~~ 55 (115)
T PF13911_consen 7 PELEAAGVKLVVIGCGSPEG-IEKFCELTGFPFPLYVDPERKLYKALGLK 55 (115)
T ss_pred HHHHHcCCeEEEEEcCCHHH-HHHHHhccCCCCcEEEeCcHHHHHHhCCc
Confidence 455556778888 4333334 99999888888778888899999999876
No 71
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.79 E-value=1.3e+02 Score=24.57 Aligned_cols=49 Identities=10% Similarity=-0.067 Sum_probs=37.3
Q ss_pred echhhhHhhHHHHHhhhcCCCeEEEE-eccchhHHHHHHHHhhCCcEEEE
Q psy16179 59 RNQEMEIHLCLSFLSKMQCPNSVWVL-SCVYRKSEIEYYAMLAKTGVHHY 107 (145)
Q Consensus 59 ~G~~~~i~~~~~VlkaiK~gkAkLVI-aP~ntKkkIEyyAkL~kVPV~~y 107 (145)
.|.+-+...+..+.+.+|+.++++|+ -|....+-++..|+..|+|+...
T Consensus 197 ~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~l 246 (266)
T cd01018 197 EGKEPSPADLKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVTI 246 (266)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeEEEe
Confidence 45555667777888899999999998 44445667778888889998766
No 72
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=23.70 E-value=3e+02 Score=24.84 Aligned_cols=74 Identities=14% Similarity=0.020 Sum_probs=46.8
Q ss_pred hCceeechhhhHhhHHHHHhhhcCCCeEEEEecc----------chhHHHHHHHHhhCCcEEEEccCcchhhh--hhCCC
Q psy16179 54 LSKLFRNQEMEIHLCLSFLSKMQCPNSVWVLSCV----------YRKSEIEYYAMLAKTGVHHYTGNNIELGT--ACGKY 121 (145)
Q Consensus 54 aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVIaP~----------ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~--AcGK~ 121 (145)
.+++.+|.. .+-..+...+.++ .|.|||+-+ -.=..+-..|+.+++|++.+.|+- +.+. .--.-
T Consensus 261 ga~l~~G~d-~v~~~~~l~~~l~--~ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v-~~~~~~~~~~g 336 (375)
T TIGR00045 261 GARLKPGID-LVLELLDLEQKIK--DADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGSL-GDGVDVLPQHG 336 (375)
T ss_pred CCEEccHHH-HHHHhhCHHHHhc--CCCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEeccc-CCChHHHHhcC
Confidence 477888877 4445555677777 589999111 122567788999999999998864 2221 11112
Q ss_pred cceEEEEEecC
Q psy16179 122 FRVCTLSITDA 132 (145)
Q Consensus 122 FRVSvLAItD~ 132 (145)
|.. +.+|.+.
T Consensus 337 ~~a-~~~i~~~ 346 (375)
T TIGR00045 337 IDA-AFSILPS 346 (375)
T ss_pred ccE-EEEcCCC
Confidence 333 6777764
No 73
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=23.62 E-value=1.7e+02 Score=24.91 Aligned_cols=48 Identities=8% Similarity=-0.020 Sum_probs=30.9
Q ss_pred eeechhhhHhhHHHHHhhhcCCC--eEEEE-eccchhHHHHHHHHhhCCcEEEEcc
Q psy16179 57 LFRNQEMEIHLCLSFLSKMQCPN--SVWVL-SCVYRKSEIEYYAMLAKTGVHHYTG 109 (145)
Q Consensus 57 ~~~G~~~~i~~~~~VlkaiK~gk--AkLVI-aP~ntKkkIEyyAkL~kVPV~~y~G 109 (145)
++||.-. +.-.++.+++.|+ ++++. .+.+ .+.+.+|..+++|+++++-
T Consensus 90 l~Sg~g~---nl~~l~~~~~~g~l~~~i~~visn~--~~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 90 LVSKEDH---CLGDLLWRWYSGELDAEIALVISNH--EDLRSLVERFGIPFHYIPA 140 (280)
T ss_pred EEcCCCh---hHHHHHHHHHcCCCCcEEEEEEEcC--hhHHHHHHHhCCCEEEcCC
Confidence 5677762 2234677888885 45555 3322 3445579999999999854
No 74
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=23.56 E-value=2.8e+02 Score=20.17 Aligned_cols=62 Identities=16% Similarity=-0.095 Sum_probs=37.6
Q ss_pred hhhcCCCeEEEE-ec-cchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEecCCchHHHh
Q psy16179 73 SKMQCPNSVWVL-SC-VYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIR 139 (145)
Q Consensus 73 kaiK~gkAkLVI-aP-~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD~G~SdIL~ 139 (145)
.-...|..|+|+ ++ ++.-.++...|+..++|.+.. .|-|.--=-|-...|||| -|+.++.+.
T Consensus 44 ~W~~~g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i----~Dag~Tei~pgs~Tvlai-gP~~~~~i~ 107 (116)
T PF01981_consen 44 EWENNGQKKIVLKVPSEEELLELAKKAKEAGLPHYLI----RDAGRTEIPPGSVTVLAI-GPAPKEEID 107 (116)
T ss_dssp HHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEE----EETSSSSSSTTCEEEEEE-EEEEHHHHH
T ss_pred HHhcCCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEE----EECCCCcCCCCCeEEEEE-CcCCHHHHH
Confidence 445688999999 66 566678888889899998777 333322112333434444 455555544
No 75
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=23.52 E-value=1.4e+02 Score=25.53 Aligned_cols=56 Identities=13% Similarity=-0.000 Sum_probs=38.6
Q ss_pred HhhHHHHHhhhcCCCeEEEE---eccchhHHHHHHHHhhCCcEEEEccCc-chhhhhhCCC
Q psy16179 65 IHLCLSFLSKMQCPNSVWVL---SCVYRKSEIEYYAMLAKTGVHHYTGNN-IELGTACGKY 121 (145)
Q Consensus 65 i~~~~~VlkaiK~gkAkLVI---aP~ntKkkIEyyAkL~kVPV~~y~Gtn-~ELG~AcGK~ 121 (145)
....-.++..++..++ +|+ ..++.|..++..|+..++|.+..-|.- ..|....|.+
T Consensus 39 ~~~~~~il~~i~~~~~-iV~~Tlv~~~lr~~l~~~~~~~~i~~~Dll~~~l~~l~~~lg~~ 98 (255)
T PF03618_consen 39 EEQLDEILEEIKEENA-IVFYTLVDPELREYLEEFCREHGIPCVDLLGPLLSALEEFLGQK 98 (255)
T ss_pred HHHHHHHHHHHhccCC-EEEEeCCCHHHHHHHHHHHHhcCCCEEeccHHHHHHHHHHHCcC
Confidence 3344557777777555 666 899999999999999999987763332 2344444543
No 76
>PLN02828 formyltetrahydrofolate deformylase
Probab=23.27 E-value=1.9e+02 Score=24.85 Aligned_cols=50 Identities=14% Similarity=0.049 Sum_probs=32.2
Q ss_pred eeechhhhHhhHHHHHhhhcCCC--eEE--EEeccc--hhHHHHHHHHhhCCcEEEEcc
Q psy16179 57 LFRNQEMEIHLCLSFLSKMQCPN--SVW--VLSCVY--RKSEIEYYAMLAKTGVHHYTG 109 (145)
Q Consensus 57 ~~~G~~~~i~~~~~VlkaiK~gk--AkL--VIaP~n--tKkkIEyyAkL~kVPV~~y~G 109 (145)
++||+-. +.-.++.+.++|+ +++ ||+... ....+..+|..+++|+++++-
T Consensus 76 lvSg~g~---nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 76 LASKQDH---CLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred EEcCCCh---hHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCC
Confidence 5677772 2234677888885 344 443221 234788889999999997643
No 77
>KOG2822|consensus
Probab=22.99 E-value=41 Score=31.04 Aligned_cols=12 Identities=42% Similarity=0.825 Sum_probs=9.4
Q ss_pred eeeeccCCCccc
Q psy16179 9 TMLCWPRPESIT 20 (145)
Q Consensus 9 ~~~~~~~~~~~~ 20 (145)
...|||||.|-.
T Consensus 132 D~~~lPRP~sPP 143 (407)
T KOG2822|consen 132 DYWCLPRPSSPP 143 (407)
T ss_pred heeecCCCCCCC
Confidence 468999998753
No 78
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=22.94 E-value=1.1e+02 Score=26.37 Aligned_cols=52 Identities=17% Similarity=0.055 Sum_probs=35.7
Q ss_pred chhhhHhhHHHHHhhhcCCCeEEEE--eccchhHHHHHHHHhhCCcEEEEccCcchh
Q psy16179 60 NQEMEIHLCLSFLSKMQCPNSVWVL--SCVYRKSEIEYYAMLAKTGVHHYTGNNIEL 114 (145)
Q Consensus 60 G~~~~i~~~~~VlkaiK~gkAkLVI--aP~ntKkkIEyyAkL~kVPV~~y~Gtn~EL 114 (145)
|.+..|.-||.=++..+. -.++|+ +.....+-||.+|...|+-+ |.|+-.+.
T Consensus 26 ~~~pmI~~~lervrks~~-~d~ivvATS~~~~d~~l~~~~~~~G~~v--frGs~~dV 79 (241)
T COG1861 26 GGEPMIEYQLERVRKSKD-LDKIVVATSDKEEDDALEEVCRSHGFYV--FRGSEEDV 79 (241)
T ss_pred CCCchHHHHHHHHhcccc-ccceEEEecCCcchhHHHHHHHHcCeeE--ecCCHHHH
Confidence 445455555554444433 488999 77788899999999888665 77776653
No 79
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=22.86 E-value=2.3e+02 Score=21.73 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=34.1
Q ss_pred HHHHhhhcCCCeEEEEeccchhHHHHHHHHhhC---CcEEEEccCcch
Q psy16179 69 LSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLAK---TGVHHYTGNNIE 113 (145)
Q Consensus 69 ~~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~k---VPV~~y~Gtn~E 113 (145)
..++++++....++|+|+......++.+....+ .|++.++|.-.-
T Consensus 22 ~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~~~~~I~~NGa~i~ 69 (221)
T TIGR02463 22 APWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLTGDPYIAENGAAIH 69 (221)
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCCCcEEEeCCcEEE
Confidence 357777887788899988777777877777665 468888887653
No 80
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=22.61 E-value=3.1e+02 Score=20.45 Aligned_cols=61 Identities=15% Similarity=-0.041 Sum_probs=39.5
Q ss_pred hcCCCeEEEE-ec-cchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEecCCchHHHhc
Q psy16179 75 MQCPNSVWVL-SC-VYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRS 140 (145)
Q Consensus 75 iK~gkAkLVI-aP-~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD~G~SdIL~~ 140 (145)
.+.|..|.|+ ++ ++.-.++...|+..++|.+... |=|.-==-|-...++|| -|+..+.+..
T Consensus 43 ~~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~----DAG~Tei~~gs~Tvlai-gP~~~~~i~~ 105 (113)
T PRK04322 43 LNEGQKKVVLKVNSEEELLELKEKAERLGLPTALIR----DAGLTQLPPGTVTALGI-GPAPEEKIDK 105 (113)
T ss_pred HHCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEE----eCCCcccCCCCcEEEEe-CCCCHHHHHH
Confidence 4689999999 65 5667888888888899987772 22221111223446776 6666666654
No 81
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.59 E-value=1e+02 Score=20.07 Aligned_cols=19 Identities=21% Similarity=0.100 Sum_probs=16.6
Q ss_pred hhHHHHHHHHhhCCcEEEE
Q psy16179 89 RKSEIEYYAMLAKTGVHHY 107 (145)
Q Consensus 89 tKkkIEyyAkL~kVPV~~y 107 (145)
.++.|+|+|..++++++.-
T Consensus 4 ~~~~L~yka~~~G~~v~~v 22 (69)
T PF07282_consen 4 FRQRLEYKAEEYGIQVVEV 22 (69)
T ss_pred HHHHHHHHHHHhCCEEEEE
Confidence 4678999999999998776
No 82
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=21.72 E-value=2.8e+02 Score=19.09 Aligned_cols=38 Identities=8% Similarity=0.101 Sum_probs=30.4
Q ss_pred HHHhhhcCCCeEEEE-eccchhHHHHHHHHhhCCcEEEE
Q psy16179 70 SFLSKMQCPNSVWVL-SCVYRKSEIEYYAMLAKTGVHHY 107 (145)
Q Consensus 70 ~VlkaiK~gkAkLVI-aP~ntKkkIEyyAkL~kVPV~~y 107 (145)
..++.++.|..-.|+ -.+..+.+|..+|+..+-++...
T Consensus 28 k~l~~l~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~~~ 66 (81)
T PRK00299 28 KTVRNMQPGETLLIIADDPATTRDIPSFCRFMDHELLAQ 66 (81)
T ss_pred HHHHcCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEEE
Confidence 356677778876777 66779999999999999998754
No 83
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=21.47 E-value=3.1e+02 Score=19.51 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=25.3
Q ss_pred hhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEE
Q psy16179 63 MEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHY 107 (145)
Q Consensus 63 ~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y 107 (145)
..+..||.-+.+-.-...++|+ .++++...++.+....+.++.+.
T Consensus 10 ~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~ 58 (182)
T cd06420 10 EALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHV 58 (182)
T ss_pred HHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEE
Confidence 3455555544332234567777 55566667777766556665544
No 84
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=21.29 E-value=2.5e+02 Score=21.50 Aligned_cols=52 Identities=13% Similarity=0.055 Sum_probs=35.3
Q ss_pred hHHHHHhhhcCCCeEEEE------ecc--------chhHHHHHHHHhhCCcEEEEccCcchhhhhhCCC
Q psy16179 67 LCLSFLSKMQCPNSVWVL------SCV--------YRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 67 ~~~~VlkaiK~gkAkLVI------aP~--------ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
.++..++++....-++|| ... ..++++++.+...++|+..|.-...+ .|-||
T Consensus 33 ~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~~d---~~RKP 98 (159)
T PF08645_consen 33 GVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQVYAAPHKD---PCRKP 98 (159)
T ss_dssp THHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEEEECGCSS---TTSTT
T ss_pred hHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEEEecCCCC---CCCCC
Confidence 355667777776677877 222 45688999999999999988554443 55665
No 85
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=21.18 E-value=2.9e+02 Score=24.86 Aligned_cols=24 Identities=4% Similarity=-0.028 Sum_probs=21.3
Q ss_pred hCceeechhhhHhhHHHHHhhhcCCCeEEEE
Q psy16179 54 LSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL 84 (145)
Q Consensus 54 aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI 84 (145)
.|+.+.|.. .|+++++.|.+..+|
T Consensus 290 ~G~avyG~~-------eV~~ALe~GAVetLL 313 (409)
T TIGR00108 290 DGLACYGED-------EVLKALDLGAVETLI 313 (409)
T ss_pred CCcEEeCHH-------HHHHHHHhCCCcEEE
Confidence 699999999 699999999997776
No 86
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=21.00 E-value=3.4e+02 Score=20.46 Aligned_cols=56 Identities=11% Similarity=0.056 Sum_probs=40.8
Q ss_pred HhhHHHHHhhhcCCCeEEEE-eccchhHHHHHHHHhhCC--cEEEEccCcchhhhhhCC
Q psy16179 65 IHLCLSFLSKMQCPNSVWVL-SCVYRKSEIEYYAMLAKT--GVHHYTGNNIELGTACGK 120 (145)
Q Consensus 65 i~~~~~VlkaiK~gkAkLVI-aP~ntKkkIEyyAkL~kV--PV~~y~Gtn~ELG~AcGK 120 (145)
+........++++-.+..|+ .|.+.-...+.++...+. |+-..+..+.+++++.|-
T Consensus 50 ~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv 108 (155)
T cd03013 50 LPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALGL 108 (155)
T ss_pred HHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCC
Confidence 44444556777766775344 777777778888888886 777787788899998885
No 87
>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A.
Probab=20.65 E-value=27 Score=22.86 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=22.4
Q ss_pred HHHHHHHhhCCcEEEEccCcchhhhhhCCCcce
Q psy16179 92 EIEYYAMLAKTGVHHYTGNNIELGTACGKYFRV 124 (145)
Q Consensus 92 kIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRV 124 (145)
-+..|++.++.+... ..++.+|..++.+-|..
T Consensus 5 tLrrY~~~~~l~~~~-~~sK~qLa~~V~kHF~s 36 (53)
T PF13867_consen 5 TLRRYKKHYKLPERP-RSSKEQLANAVRKHFNS 36 (53)
T ss_dssp HHHHHHHHTT----S-S--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCC-CCCHHHHHHHHHHHHhc
Confidence 357789999998777 89999999999999975
No 88
>KOG0075|consensus
Probab=20.41 E-value=39 Score=28.05 Aligned_cols=26 Identities=23% Similarity=0.056 Sum_probs=15.6
Q ss_pred hhhcCCCeEEEE----eccchhHHHHHHHH
Q psy16179 73 SKMQCPNSVWVL----SCVYRKSEIEYYAM 98 (145)
Q Consensus 73 kaiK~gkAkLVI----aP~ntKkkIEyyAk 98 (145)
.++-+|..-+++ ..+-.|+..||||.
T Consensus 58 rk~tkgnvtiklwD~gGq~rfrsmWerycR 87 (186)
T KOG0075|consen 58 RKVTKGNVTIKLWDLGGQPRFRSMWERYCR 87 (186)
T ss_pred EEeccCceEEEEEecCCCccHHHHHHHHhh
Confidence 455666766666 44455566666664
No 89
>PRK04011 peptide chain release factor 1; Provisional
Probab=20.34 E-value=2.7e+02 Score=25.08 Aligned_cols=25 Identities=8% Similarity=-0.093 Sum_probs=21.7
Q ss_pred hCceeechhhhHhhHHHHHhhhcCCCeEEEEe
Q psy16179 54 LSKLFRNQEMEIHLCLSFLSKMQCPNSVWVLS 85 (145)
Q Consensus 54 aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVIa 85 (145)
.|+.+.|.. .|++|++.|.+.-+|.
T Consensus 294 ~g~avyG~~-------~V~~Ale~GAVetLLV 318 (411)
T PRK04011 294 GGLAVYGEE-------EVRKALEMGAVDTLLI 318 (411)
T ss_pred CCcEEEcHH-------HHHHHHHcCCceEEEE
Confidence 688999999 7999999999977763
Done!