Query psy16179
Match_columns 145
No_of_seqs 115 out of 289
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 22:47:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_f 60S ribosomal protein L 100.0 1.5E-29 5.1E-34 186.6 7.4 92 47-145 17-112 (112)
2 3u5e_c L32, RP73, YL38, 60S ri 99.9 4.8E-28 1.7E-32 175.0 6.8 88 47-141 13-104 (105)
3 4a18_G RPL30; ribosome, eukary 99.9 5.9E-27 2E-31 168.8 6.7 87 47-140 13-103 (104)
4 3j21_Z 50S ribosomal protein L 99.9 8.1E-27 2.8E-31 166.3 7.2 89 47-142 6-98 (99)
5 3vi6_A 60S ribosomal protein L 99.9 1.6E-25 5.6E-30 167.5 6.4 89 47-142 18-110 (125)
6 1w41_A 50S ribosomal protein L 99.9 3.9E-25 1.3E-29 157.8 7.1 90 47-143 7-100 (101)
7 3v7q_A Probable ribosomal prot 99.9 3.9E-25 1.3E-29 158.6 6.3 85 47-140 10-98 (101)
8 3on1_A BH2414 protein; structu 99.9 2.5E-24 8.4E-29 153.9 6.3 86 47-141 9-98 (101)
9 3cpq_A 50S ribosomal protein L 99.9 2.5E-24 8.5E-29 156.4 6.3 90 47-143 12-105 (110)
10 3v7e_A Ribosome-associated pro 99.8 7.3E-21 2.5E-25 132.3 8.0 75 48-130 3-81 (82)
11 2aif_A Ribosomal protein L7A; 99.8 7.6E-21 2.6E-25 143.1 8.6 87 47-141 32-123 (135)
12 1rlg_A 50S ribosomal protein L 99.8 3.3E-20 1.1E-24 136.0 8.9 100 27-140 4-108 (119)
13 2lbw_A H/ACA ribonucleoprotein 99.8 1.7E-20 5.8E-25 138.6 7.2 90 41-138 4-99 (121)
14 2jnb_A NHP2-like protein 1; sp 99.8 2.9E-21 1E-25 148.3 2.9 87 47-141 41-132 (144)
15 2ale_A SNU13, NHP2/L7AE family 99.8 2.9E-20 9.9E-25 140.6 8.1 86 47-140 23-113 (134)
16 1vq8_F 50S ribosomal protein L 99.8 2.9E-20 9.8E-25 136.5 7.4 101 26-140 5-110 (120)
17 3o85_A Ribosomal protein L7AE; 99.8 4.6E-20 1.6E-24 137.0 7.3 87 41-135 15-107 (122)
18 2fc3_A 50S ribosomal protein L 99.8 6.6E-20 2.3E-24 135.5 7.8 101 26-140 4-109 (124)
19 2xzm_U Ribosomal protein L7AE 99.8 1.3E-19 4.3E-24 135.9 6.0 82 46-135 14-111 (126)
20 1xbi_A 50S ribosomal protein L 99.8 5.4E-19 1.9E-23 130.3 5.3 84 47-141 23-111 (120)
21 3u5c_M 40S ribosomal protein S 99.6 9.1E-16 3.1E-20 118.4 3.6 86 46-139 30-133 (143)
22 2zkr_f 60S ribosomal protein L 99.4 5.8E-14 2E-18 117.7 5.7 74 54-136 133-211 (266)
23 3jyw_G 60S ribosomal protein L 99.4 4.6E-13 1.6E-17 99.3 4.8 73 55-136 24-101 (113)
24 3izc_H 60S ribosomal protein R 99.3 1.5E-12 5E-17 108.8 4.7 71 57-136 132-207 (256)
25 4a17_F RPL7A, 60S ribosomal pr 98.8 5.1E-09 1.7E-13 87.5 6.6 71 57-136 125-200 (255)
26 2kg4_A Growth arrest and DNA-d 98.8 2.5E-08 8.7E-13 78.6 8.1 82 46-135 25-133 (165)
27 3iz5_H 60S ribosomal protein L 97.7 4.4E-05 1.5E-09 64.0 6.1 70 57-135 128-202 (258)
28 3ffm_A Growth arrest and DNA-d 97.4 0.00091 3.1E-08 53.0 8.6 82 46-135 36-136 (167)
29 3cg6_A Growth arrest and DNA-d 97.2 0.00094 3.2E-08 51.9 7.2 82 46-135 15-115 (146)
30 2yvq_A Carbamoyl-phosphate syn 62.0 9 0.00031 27.9 4.0 44 70-117 87-137 (143)
31 2xw6_A MGS, methylglyoxal synt 57.4 9.5 0.00033 28.4 3.5 36 70-105 65-109 (134)
32 1wn2_A Peptidyl-tRNA hydrolase 53.1 61 0.0021 23.3 7.3 62 74-140 50-113 (121)
33 1b93_A Protein (methylglyoxal 50.3 19 0.00064 27.4 4.2 45 70-118 73-126 (152)
34 1vmd_A MGS, methylglyoxal synt 49.2 19 0.00065 28.2 4.2 45 70-118 89-142 (178)
35 3gkn_A Bacterioferritin comigr 47.2 64 0.0022 21.9 6.4 58 65-122 55-112 (163)
36 2wfc_A Peroxiredoxin 5, PRDX5; 47.2 59 0.002 23.3 6.3 57 65-121 52-111 (167)
37 3fro_A GLGA glycogen synthase; 46.4 69 0.0024 24.6 7.0 55 64-119 266-329 (439)
38 2zv3_A PTH, peptidyl-tRNA hydr 44.0 44 0.0015 23.8 5.2 61 75-140 45-107 (115)
39 3ixr_A Bacterioferritin comigr 41.8 68 0.0023 22.8 6.0 57 65-121 71-127 (179)
40 1rlk_A Hypothetical protein TA 39.6 63 0.0021 23.0 5.4 61 75-140 47-109 (117)
41 1xty_A PTH, peptidyl-tRNA hydr 38.6 67 0.0023 22.9 5.5 62 74-140 49-112 (120)
42 3uma_A Hypothetical peroxiredo 36.6 1.2E+02 0.0042 22.2 6.8 57 65-121 77-136 (184)
43 1gz0_A Hypothetical tRNA/RRNA 36.2 1.1E+02 0.0039 24.0 6.9 67 57-132 14-86 (253)
44 3ir9_A Peptide chain release f 36.0 47 0.0016 25.0 4.5 25 53-84 43-67 (166)
45 2a4v_A Peroxiredoxin DOT5; yea 34.5 1.1E+02 0.0037 20.8 8.0 54 67-121 57-110 (159)
46 3av3_A Phosphoribosylglycinami 31.3 72 0.0025 24.5 4.9 39 70-109 19-61 (212)
47 3drn_A Peroxiredoxin, bacterio 30.8 1.3E+02 0.0044 20.5 7.8 53 69-121 53-105 (161)
48 1tp9_A Peroxiredoxin, PRX D (t 29.2 1.4E+02 0.0049 20.6 7.1 58 64-121 55-115 (162)
49 4f82_A Thioredoxin reductase; 27.8 1.9E+02 0.0066 21.7 6.8 56 65-120 68-126 (176)
50 1meo_A Phosophoribosylglycinam 25.3 89 0.003 24.1 4.5 49 57-109 6-58 (209)
51 1jkx_A GART;, phosphoribosylgl 25.0 98 0.0034 23.9 4.7 48 57-108 6-57 (212)
52 3p9x_A Phosphoribosylglycinami 24.9 88 0.003 24.5 4.4 39 70-109 18-60 (211)
53 2qi2_A Pelota, cell division p 24.6 2.7E+02 0.0093 23.1 7.6 61 50-118 259-324 (347)
54 3kcq_A Phosphoribosylglycinami 23.9 94 0.0032 24.3 4.4 47 57-108 14-65 (215)
55 3nk6_A 23S rRNA methyltransfer 23.4 2.1E+02 0.0071 22.9 6.5 68 57-133 36-106 (277)
56 2q8p_A Iron-regulated surface 22.7 1E+02 0.0034 22.9 4.2 43 79-121 60-110 (260)
57 1n8j_A AHPC, alkyl hydroperoxi 22.5 2.1E+02 0.0072 20.3 6.8 57 65-121 50-110 (186)
58 2c0d_A Thioredoxin peroxidase 22.3 2.3E+02 0.0079 21.2 6.3 56 65-120 76-138 (221)
59 3u5r_E Uncharacterized protein 21.7 2.4E+02 0.0081 20.6 7.2 57 65-121 78-142 (218)
60 4ds3_A Phosphoribosylglycinami 21.6 1.2E+02 0.004 23.7 4.5 47 57-108 13-64 (209)
61 3auf_A Glycinamide ribonucleot 20.7 1.5E+02 0.005 23.3 4.9 39 70-109 38-80 (229)
62 2h01_A 2-Cys peroxiredoxin; th 20.4 2.2E+02 0.0076 20.0 5.5 54 68-121 54-114 (192)
No 1
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=99.96 E-value=1.5e-29 Score=186.62 Aligned_cols=92 Identities=46% Similarity=0.752 Sum_probs=88.8
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCc
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYF 122 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~F 122 (145)
.|.+|+++||+.+|++ ++++++++|+|+||| ||++++++|+|||++++||+++|+||+.|||++||++|
T Consensus 17 ~L~la~kagk~~~G~~-------~t~kai~~gkakLVilA~D~~~~~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~Gk~~ 89 (112)
T 3iz5_f 17 KLQLVMKSGKYTLGYK-------TVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNVDLGTACGKYY 89 (112)
T ss_dssp HHHHHHTTCEEEESHH-------HHHHHHHTTCCSEEEECSCCCHHHHHHHHHHHHHTTCCEECCCCTTCTHHHHHCTTC
T ss_pred HHHHHHHhCCeeECHH-------HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEeCCCHHHHHHHhCCcc
Confidence 5789999999999999 699999999999999 99999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCchHHHhcCCCCC
Q psy16179 123 RVCTLSITDAGDSDIIRSMPSEH 145 (145)
Q Consensus 123 RVSvLAItD~G~SdIL~~l~~~~ 145 (145)
|++++||+|+|||++|+++.+.|
T Consensus 90 ~v~~vaI~D~G~a~~l~~~~~~~ 112 (112)
T 3iz5_f 90 RVCCLSILDPGDSDIISTTTTTQ 112 (112)
T ss_dssp SSCEEEEECCSCCSHHHHTTSCC
T ss_pred ceEEEEEeccchHHHHHhccccC
Confidence 99999999999999999998765
No 2
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=99.94 E-value=4.8e-28 Score=175.03 Aligned_cols=88 Identities=44% Similarity=0.616 Sum_probs=85.2
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCc
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYF 122 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~F 122 (145)
.|.+|.++|++++|++ +|++++++|+++||| ||++++++|++||++++||+++|.||+.|||++||++|
T Consensus 13 ~L~la~kagk~v~G~~-------~v~kai~~gkaklVilA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~A~Gk~~ 85 (105)
T 3u5e_c 13 KLALVIKSGKYTLGYK-------STVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLF 85 (105)
T ss_dssp HHHHHHTTSEEEESHH-------HHHHHHHTTCCSEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSS
T ss_pred HHHHHHHhCCeeECHH-------HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHhCCcc
Confidence 5799999999999999 699999999999999 99999999999999999999988899999999999999
Q ss_pred ceEEEEEecCCchHHHhcC
Q psy16179 123 RVCTLSITDAGDSDIIRSM 141 (145)
Q Consensus 123 RVSvLAItD~G~SdIL~~l 141 (145)
|+|+++|+|+|||++|+++
T Consensus 86 ~~~~vaI~D~G~a~~l~~~ 104 (105)
T 3u5e_c 86 RVGVVSILEAGDSDILTTL 104 (105)
T ss_dssp CCSEEEEEECCSCCTTTTT
T ss_pred cEEEEEEeccchHHHHHhc
Confidence 9999999999999999886
No 3
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=99.93 E-value=5.9e-27 Score=168.83 Aligned_cols=87 Identities=44% Similarity=0.705 Sum_probs=83.8
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCc
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYF 122 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~F 122 (145)
.|.+|.++|++.+|++ +|++++++|+|+||| ||+++++++++||+.++||+++|.+|+.|||+|||+++
T Consensus 13 ~L~la~kagklv~G~~-------~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~ 85 (104)
T 4a18_G 13 KLALVMRSGKATLGYK-------STIKAIRNGTAKLVFISNNCPTVRKSEIEYYASLAQISIHHFVGSNVELGTACGKYH 85 (104)
T ss_dssp HHHHHHHHSEEEESHH-------HHHHHHHHTCCCEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSS
T ss_pred HHHHHHHhCCEeECHH-------HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHhCCcc
Confidence 5799999999999999 699999999999999 99999999999999999999987799999999999999
Q ss_pred ceEEEEEecCCchHHHhc
Q psy16179 123 RVCTLSITDAGDSDIIRS 140 (145)
Q Consensus 123 RVSvLAItD~G~SdIL~~ 140 (145)
|+|++||+|+|||++|++
T Consensus 86 ~~~~vaI~D~G~a~~l~~ 103 (104)
T 4a18_G 86 RCSTMAILDAGDSDILKT 103 (104)
T ss_dssp CCSEEEEEECSSCGGGCC
T ss_pred CEEEEEEeccchHHHhhc
Confidence 999999999999999975
No 4
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.93 E-value=8.1e-27 Score=166.27 Aligned_cols=89 Identities=27% Similarity=0.410 Sum_probs=85.0
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCc
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYF 122 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~F 122 (145)
-|.+|.|+|++.+|++ +|++++++|+++||| ||++++++|+++|+.++||+|+|.+|+.|||++||+++
T Consensus 6 ~L~la~kagk~v~G~~-------~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~ 78 (99)
T 3j21_Z 6 ELRKAMETGKVVLGSN-------ETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPF 78 (99)
T ss_dssp HHHHHHHSSCEEESHH-------HHHHHHHHTCCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEECCCSCGGGGTTCSTT
T ss_pred HHHHHHHhCCEeECHH-------HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHHCCCC
Confidence 4789999999999999 699999999999999 99999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCchHHHhcCC
Q psy16179 123 RVCTLSITDAGDSDIIRSMP 142 (145)
Q Consensus 123 RVSvLAItD~G~SdIL~~l~ 142 (145)
+++++||+|+|||++|+..+
T Consensus 79 ~~~~vaI~d~g~a~~l~~~~ 98 (99)
T 3j21_Z 79 VVASLAIVDPGESKILAIAK 98 (99)
T ss_dssp CSEEEEESSCSSCSHHHHHT
T ss_pred CEEEEEEEccchHHHHHhhh
Confidence 99999999999999998643
No 5
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=99.92 E-value=1.6e-25 Score=167.46 Aligned_cols=89 Identities=60% Similarity=0.935 Sum_probs=82.8
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCc
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYF 122 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~F 122 (145)
.|.+|.++|++++|++ +|++++++|+++||| ||++++++|+|||+.+++||++|.||+.|||+|||++|
T Consensus 18 ~L~lA~kaGklv~G~~-------~v~kaIr~gkakLVIiA~Das~~~~~ki~~~~~~~~~~V~~~~~sk~eLG~A~Gk~~ 90 (125)
T 3vi6_A 18 RLQLVMKSGKYVLGYK-------QTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYY 90 (125)
T ss_dssp HHHHHHHHSEEEESHH-------HHHHHHHTTCCSEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCHHHHHHHTTCSS
T ss_pred HHHHHHHhCCeeeCHH-------HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhCCCcEEEcCCHHHHHHHhCCcc
Confidence 6899999999999999 799999999999999 99999999999999999999988999999999999999
Q ss_pred ceEEEEEecCCchHHHhcCC
Q psy16179 123 RVCTLSITDAGDSDIIRSMP 142 (145)
Q Consensus 123 RVSvLAItD~G~SdIL~~l~ 142 (145)
|+|++||+|+|||++|.++-
T Consensus 91 ~v~~vaI~D~G~a~~l~~~~ 110 (125)
T 3vi6_A 91 RVCTLAIIDPGDSDIIRSMP 110 (125)
T ss_dssp CCCEEEEEECTTCCCC----
T ss_pred cEEEEEEeCchhHHHHHHHH
Confidence 99999999999999998864
No 6
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=99.91 E-value=3.9e-25 Score=157.78 Aligned_cols=90 Identities=24% Similarity=0.348 Sum_probs=84.9
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCc
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYF 122 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~F 122 (145)
.|++|.|+|++.+|++ +|++++++|+|+||| +|++++++|+++|+.++||++.|.+|+.|||++||+++
T Consensus 7 ~L~la~kagkl~~G~~-------~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~ 79 (101)
T 1w41_A 7 ELRKAQDTGKIVMGAR-------KSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPH 79 (101)
T ss_dssp HHHHHHHHSEEEESHH-------HHHHHHHHTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESSCHHHHHHHTTCSS
T ss_pred HHHHHHHcCCEeECHH-------HHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEecCCHHHHHHHhCCCC
Confidence 5899999999999999 699999999999999 99999999999999999999999899999999999999
Q ss_pred ceEEEEEecCCchHHHhcCCC
Q psy16179 123 RVCTLSITDAGDSDIIRSMPS 143 (145)
Q Consensus 123 RVSvLAItD~G~SdIL~~l~~ 143 (145)
+++++||+|+|||+|++.+.+
T Consensus 80 ~~~~vai~d~g~a~i~~~~~~ 100 (101)
T 1w41_A 80 TVSALAVVDPGASRILALGGK 100 (101)
T ss_dssp CCCEEEEEECTTCCGGGGGC-
T ss_pred cEEEEEEecCCHHHHHHHhhc
Confidence 999999999999997776654
No 7
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=99.91 E-value=3.9e-25 Score=158.60 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=81.9
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCc
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYF 122 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~F 122 (145)
.|.+|.++|++++|++ +|++++++|+|+||| ||++++++|+++|+.++||+++| +|+.|||+|||++|
T Consensus 10 ~L~la~kagk~v~G~~-------~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~-~s~~eLG~A~Gk~~ 81 (101)
T 3v7q_A 10 LLGLANRARKVVSGED-------LVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKV-ESRAVLGRSIGKEA 81 (101)
T ss_dssp HHHHHHHTTCEEESHH-------HHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHTTSSC
T ss_pred Hhhhhhhhhhcccchh-------hhHHHHhcCceeEEEEeccccccchhhhcccccccCCCeeee-chHHHHHhhhCccc
Confidence 6899999999999999 699999999999999 99999999999999999999999 99999999999999
Q ss_pred ceEEEEEecCCchHHHhc
Q psy16179 123 RVCTLSITDAGDSDIIRS 140 (145)
Q Consensus 123 RVSvLAItD~G~SdIL~~ 140 (145)
|+ ++||+|+|||+.|.+
T Consensus 82 ~~-~~ai~D~g~a~~i~~ 98 (101)
T 3v7q_A 82 RV-VVAVTDQGFANKLIS 98 (101)
T ss_dssp CS-EEEECCHHHHHHHHH
T ss_pred eE-EEEEeccHHHHHHHH
Confidence 97 799999999999875
No 8
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=99.90 E-value=2.5e-24 Score=153.88 Aligned_cols=86 Identities=23% Similarity=0.254 Sum_probs=81.8
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCc
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYF 122 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~F 122 (145)
.|.+|.++|++++|++ +|++++++|+|+||| ||++++++|+++|+.++||++++ +|+.|||++||+++
T Consensus 9 ~L~la~kagk~v~G~~-------~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~-~s~~eLG~a~Gk~~ 80 (101)
T 3on1_A 9 LLGLAARARQLLTGEE-------QVVKAVQNGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVV-GNRQMLGRAIGKHE 80 (101)
T ss_dssp HHHHHHHTTCEEESHH-------HHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEE-SCHHHHHHHTTSSC
T ss_pred HHHHHHHHCCEeECHH-------HHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEe-CCHHHHHHHhCCcC
Confidence 6899999999999999 699999999999999 99999999999999999999987 99999999999998
Q ss_pred ceEEEEEecCCchHHHhcC
Q psy16179 123 RVCTLSITDAGDSDIIRSM 141 (145)
Q Consensus 123 RVSvLAItD~G~SdIL~~l 141 (145)
|+ ++||+|+|||+.|.++
T Consensus 81 ~~-~vai~d~g~a~~i~~~ 98 (101)
T 3on1_A 81 RV-VIGVKDAGFSRKLAAL 98 (101)
T ss_dssp CS-EEEECCHHHHHHHHHH
T ss_pred eE-EEEEECccHHHHHHHH
Confidence 87 8999999999998763
No 9
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=99.90 E-value=2.5e-24 Score=156.42 Aligned_cols=90 Identities=23% Similarity=0.367 Sum_probs=85.3
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCc
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYF 122 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~F 122 (145)
.|++|.++|++.+|++ +|++++++|+|+||| ||++.+++|+++|+.++||++.|.+|+.|||.+||+++
T Consensus 12 ~L~la~kagkl~~G~~-------~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~~ 84 (110)
T 3cpq_A 12 AIRTAVDTGKVILGSK-------RTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPF 84 (110)
T ss_dssp HHHHHHHHSEEEESHH-------HHHHHHHTTCCSEEEECTTCBHHHHHHHHHHHHHTTCCEEECCSCHHHHHHHTTCSS
T ss_pred HHHHHHHcCCeeeCHH-------HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCHHHHHHHhCCcc
Confidence 6899999999999999 699999999999999 99999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCchHHHhcCCC
Q psy16179 123 RVCTLSITDAGDSDIIRSMPS 143 (145)
Q Consensus 123 RVSvLAItD~G~SdIL~~l~~ 143 (145)
++|++||+|+|||+|++.+.+
T Consensus 85 ~~s~vaI~d~g~a~i~~~~~~ 105 (110)
T 3cpq_A 85 PVAALLVLDEGLSNIMELVEK 105 (110)
T ss_dssp CCSEEEEEECTTCCHHHHHHC
T ss_pred ceEEEEEecCCHHHHHHHhhc
Confidence 999999999999997776643
No 10
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=99.83 E-value=7.3e-21 Score=132.33 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=71.2
Q ss_pred hHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcc
Q psy16179 48 LKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFR 123 (145)
Q Consensus 48 ~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FR 123 (145)
+..+++|||+.+|.+ ++++++++|+|+||| |+++++++|+++|+.++||+++| +++.|||++||++|+
T Consensus 3 ~~~~~kagk~~~G~~-------~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v-~sk~eLG~a~Gk~~~ 74 (82)
T 3v7e_A 3 YDKVSQAKSIIIGTK-------QTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMV-ESMKKLGKACGIEVG 74 (82)
T ss_dssp HHHHHHCSEEEESHH-------HHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEE-SCHHHHHHHHTCSSC
T ss_pred HHHHHHcCCeeEcHH-------HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE-CCHHHHHHHhCCCCC
Confidence 456789999999999 799999999999999 89999999999999999999999 699999999999999
Q ss_pred eEEEEEe
Q psy16179 124 VCTLSIT 130 (145)
Q Consensus 124 VSvLAIt 130 (145)
+|++||+
T Consensus 75 ~~~~ai~ 81 (82)
T 3v7e_A 75 AAAVAII 81 (82)
T ss_dssp CSEEEEE
T ss_pred EEEEEEe
Confidence 9999996
No 11
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=99.83 E-value=7.6e-21 Score=143.14 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=82.4
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccchh-HHHHHHHHhhCCcEEEEccCcchhhhhhCCC
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRK-SEIEYYAMLAKTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntK-kkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
.|++|.++|++.+|.+ +|++++++|+|+||| |+++++ ++|+++|+.++||++++ +++.+||++||++
T Consensus 32 ~L~lA~kagklv~G~~-------~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v-~sk~eLG~a~G~~ 103 (135)
T 2aif_A 32 LVQQACNYKQLRKGAN-------EATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFV-RSKVALGRACGVS 103 (135)
T ss_dssp HHHHHHHTTCEEESHH-------HHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHTTCS
T ss_pred HHHHHHHcCCcccCHH-------HHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEE-CCHHHHHHHhCCC
Confidence 7999999999999999 699999999999999 888875 99999999999999988 9999999999999
Q ss_pred cceEEEEEecCCchHHHhcC
Q psy16179 122 FRVCTLSITDAGDSDIIRSM 141 (145)
Q Consensus 122 FRVSvLAItD~G~SdIL~~l 141 (145)
++++++||+|+|+|++++.+
T Consensus 104 ~~v~~vaI~d~~~s~i~~~~ 123 (135)
T 2aif_A 104 RPVIAAAITSKDGSSLSSQI 123 (135)
T ss_dssp SCCSEEEEECCTTCTTHHHH
T ss_pred CcEEEEEEEcCCcHHHHHHH
Confidence 99999999999999998764
No 12
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=99.82 E-value=3.3e-20 Score=136.01 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=84.1
Q ss_pred eeeechhhhhhhhhhcchhhhhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccc-hhHHHHHHHHhhC
Q psy16179 27 SLELPVDVWTSIARISNKVLVLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVY-RKSEIEYYAMLAK 101 (145)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~n-tKkkIEyyAkL~k 101 (145)
.+++|-+.=..+. -.|++|.++|++.+|.+ +|.+++++|+|+||| |+|+ .+++|+++|+.++
T Consensus 4 ~~~~p~~l~~~i~------~~L~lA~kag~l~~G~~-------~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~ 70 (119)
T 1rlg_A 4 RFEVPEDMQNEAL------SLLEKVRESGKVKKGTN-------ETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKN 70 (119)
T ss_dssp ---CCSHHHHHHH------HHHHHHHHHSEEEESHH-------HHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH------HHHHHHHHhCCeeECHH-------HHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcC
Confidence 4566655433332 37999999999999999 699999999999999 7776 5999999999999
Q ss_pred CcEEEEccCcchhhhhhCCCcceEEEEEecCCchHHHhc
Q psy16179 102 TGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRS 140 (145)
Q Consensus 102 VPV~~y~Gtn~ELG~AcGK~FRVSvLAItD~G~SdIL~~ 140 (145)
||++.. +|+.+||++||++|+++++||+|.|+++.+..
T Consensus 71 Vp~~~~-~sk~eLG~a~G~~~~~~~vaI~d~g~a~~~~~ 108 (119)
T 1rlg_A 71 VPYIYV-KSKNDLGRAVGIEVPCASAAIINEGELRKELG 108 (119)
T ss_dssp CCEEEE-SCHHHHHHHTTCSSCCSEEEEEECGGGHHHHH
T ss_pred CCEEEe-CCHHHHHHHhCCCCCeEEEEEecCchHHHHHH
Confidence 996555 99999999999999999999999999987643
No 13
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=99.82 E-value=1.7e-20 Score=138.60 Aligned_cols=90 Identities=12% Similarity=0.031 Sum_probs=82.7
Q ss_pred hcchh-hhhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccc-hhHHHHHHHHhhCCcEEEEccCcchh
Q psy16179 41 ISNKV-LVLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVY-RKSEIEYYAMLAKTGVHHYTGNNIEL 114 (145)
Q Consensus 41 ~~~~~-~~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~n-tKkkIEyyAkL~kVPV~~y~Gtn~EL 114 (145)
+.+|+ -+|++|.++|++.+|.+ +|++++++|+|+||| |+|+ .+++|+++|..++||++++ +++.+|
T Consensus 4 l~~ki~~~L~~a~k~gkl~~G~~-------~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v-~sk~eL 75 (121)
T 2lbw_A 4 LNKKVLKTVKKASKAKNVKRGVK-------EVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFI-PSKQDL 75 (121)
T ss_dssp HHHHHHHHHHHHHTTTCEEESHH-------HHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEEC-CCHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccHH-------HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEE-CCHHHH
Confidence 44554 37999999999999999 699999999999999 8887 5999999999999999988 799999
Q ss_pred hhhhCCCcceEEEEEecCCchHHH
Q psy16179 115 GTACGKYFRVCTLSITDAGDSDII 138 (145)
Q Consensus 115 G~AcGK~FRVSvLAItD~G~SdIL 138 (145)
|++||+.+++|+++|+|+|||+.+
T Consensus 76 G~a~g~k~~~s~v~I~d~g~a~~~ 99 (121)
T 2lbw_A 76 GAAGATKRPTSVVFIVPGSNKKKD 99 (121)
T ss_dssp HHHHTCSSCCSEEEECCSCTTGGG
T ss_pred HHHhCCCCCEEEEEEEcCcchHHH
Confidence 999999888899999999999977
No 14
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=99.82 E-value=2.9e-21 Score=148.27 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=82.4
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccc-hhHHHHHHHHhhCCcEEEEccCcchhhhhhCCC
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVY-RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~n-tKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
+|++|.++|++.+|.+ +|++++++|+|+||| |+++ ++++|+++|..++||++++ +++.+||++||++
T Consensus 41 ~L~lA~kagkl~~G~k-------ev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v-~sk~eLG~a~Gk~ 112 (144)
T 2jnb_A 41 LVQQSCNYKQLRKGAN-------EATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFV-RSKQALGRACGVS 112 (144)
T ss_dssp HHHHHHHTTCCCBCHH-------HHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEE-SCSHHHHHHHTCS
T ss_pred HHHHHHHcCCccccHH-------HHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEE-CCHHHHHHHhCCC
Confidence 6899999999999999 699999999999999 8886 8999999999999999988 8999999999999
Q ss_pred cceEEEEEecCCchHHHhcC
Q psy16179 122 FRVCTLSITDAGDSDIIRSM 141 (145)
Q Consensus 122 FRVSvLAItD~G~SdIL~~l 141 (145)
+++|++||+|+|+|++++.+
T Consensus 113 ~~vs~vaI~~~~~s~i~~~~ 132 (144)
T 2jnb_A 113 RPVIACSVTIKEGSQLKQQI 132 (144)
T ss_dssp SCCSEEEEECCTTCTTHHHH
T ss_pred CceEEEEEEeCCcHHHHHHH
Confidence 99999999999999988764
No 15
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=99.81 E-value=2.9e-20 Score=140.61 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=80.5
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccc-hhHHHHHHHHhhCCcEEEEccCcchhhhhhCCC
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVY-RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~n-tKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
+|++|.++|++.+|.+ +|++++++|+|+||| |+++ ++++|+++|..++||++++ +++.+||++||++
T Consensus 23 ~L~lA~k~gkl~~G~~-------~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v-~sk~eLG~a~G~~ 94 (134)
T 2ale_A 23 VVQQAANLRQLKKGAN-------EATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFV-PSRVALGRACGVS 94 (134)
T ss_dssp HHHHHHHTTCEEESHH-------HHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEE-SCHHHHHHHTTCS
T ss_pred HHHHHHHcCCcccCch-------HHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEE-CCHHHHHHHhCCC
Confidence 6999999999999999 699999999999999 8886 8999999999999999988 9999999999999
Q ss_pred cceEEEEEecCCchHHHhc
Q psy16179 122 FRVCTLSITDAGDSDIIRS 140 (145)
Q Consensus 122 FRVSvLAItD~G~SdIL~~ 140 (145)
+++|+++|+|+|++++...
T Consensus 95 ~~~s~vaI~d~~~s~~~~l 113 (134)
T 2ale_A 95 RPVIAASITTNDASAIKTQ 113 (134)
T ss_dssp SCCSEEEEECCTTCTTHHH
T ss_pred CCeEEEEEEcCChHHHHHH
Confidence 9989999999998876543
No 16
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=99.81 E-value=2.9e-20 Score=136.52 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=86.3
Q ss_pred eeeeechhhhhhhhhhcchhhhhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccc-hhHHHHHHHHhh
Q psy16179 26 LSLELPVDVWTSIARISNKVLVLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVY-RKSEIEYYAMLA 100 (145)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~n-tKkkIEyyAkL~ 100 (145)
..+++|-+.=..+. -.|++|.++|++.+|.+ +|.+++++|+|+||| |+++ .+++|+++|+.+
T Consensus 5 v~~~~p~~l~~~i~------~~L~~A~kag~l~~G~~-------~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~ 71 (120)
T 1vq8_F 5 VDFDVPADLEDDAL------EALEVARDTGAVKKGTN-------ETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEK 71 (120)
T ss_dssp CCSCCCHHHHHHHH------HHHHHHHHSSCEEESHH-------HHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTT
T ss_pred ccCCCCHHHHHHHH------HHHHHHHHcCCEeECHH-------HHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhc
Confidence 34566755433332 37999999999999999 699999999999999 7776 599999999999
Q ss_pred CCcEEEEccCcchhhhhhCCCcceEEEEEecCCchHHHhc
Q psy16179 101 KTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRS 140 (145)
Q Consensus 101 kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD~G~SdIL~~ 140 (145)
+||++++ +|+.+||.+||++|+++++||+|.||++.+..
T Consensus 72 ~Vp~~~~-~sk~eLG~a~G~~~~~~~vaI~d~g~a~~~~~ 110 (120)
T 1vq8_F 72 GVPFIFV-EQQDDLGHAAGLEVGSAAAAVTDAGEADADVE 110 (120)
T ss_dssp CCCEEEE-SCHHHHHHHTTCSSCCSEEEESSCSSCHHHHH
T ss_pred CCCEEEE-CCHHHHHHHhCCCCCeEEEEEecCchHHHHHH
Confidence 9996555 99999999999999999999999999987643
No 17
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=99.80 E-value=4.6e-20 Score=137.03 Aligned_cols=87 Identities=16% Similarity=0.133 Sum_probs=78.2
Q ss_pred hcchhh-hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccch-hHHHHHHHHhhCCcEEEEccCcchh
Q psy16179 41 ISNKVL-VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYR-KSEIEYYAMLAKTGVHHYTGNNIEL 114 (145)
Q Consensus 41 ~~~~~~-~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~nt-KkkIEyyAkL~kVPV~~y~Gtn~EL 114 (145)
+.+|++ .|++|.++|++.+|++ +|++++++|+|+||| |++++ +++++++|..++||++++ +++.+|
T Consensus 15 l~~kil~~L~lA~kagklv~G~~-------~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v-~sk~eL 86 (122)
T 3o85_A 15 LSLELLNLVKHGASLQAIKRGAN-------EALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFI-GSKNAL 86 (122)
T ss_dssp HHHHHHHHHHHHHHTTCEEESHH-------HHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEE-SCHHHH
T ss_pred HHHHHHHHHHHHHHhCCEeEcHH-------HHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEE-CCHHHH
Confidence 334433 6999999999999999 799999999999999 87775 899999999999996655 999999
Q ss_pred hhhhCCCcceEEEEEecCCch
Q psy16179 115 GTACGKYFRVCTLSITDAGDS 135 (145)
Q Consensus 115 G~AcGK~FRVSvLAItD~G~S 135 (145)
|++||+++++|+++|+|+|+.
T Consensus 87 G~a~Gk~~~vs~vaI~d~~~~ 107 (122)
T 3o85_A 87 GRACNVSVPTIVASIGKHDAL 107 (122)
T ss_dssp HHHTTCSSCCSEEEECCCTTT
T ss_pred HHHhCCCCCEEEEEEEcccch
Confidence 999999999999999999984
No 18
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=99.80 E-value=6.6e-20 Score=135.46 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=86.0
Q ss_pred eeeeechhhhhhhhhhcchhhhhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccc-hhHHHHHHHHhh
Q psy16179 26 LSLELPVDVWTSIARISNKVLVLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVY-RKSEIEYYAMLA 100 (145)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~n-tKkkIEyyAkL~ 100 (145)
..+++|-+.=..+. -.|++|.++|++.+|.+ +|++++++|+|+||| |+++ .+++|+++|+.+
T Consensus 4 v~~~~p~~l~~~i~------~~L~lA~kagkl~~G~~-------~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~ 70 (124)
T 2fc3_A 4 VRFEVPEDLAEKAY------EAVKRARETGRIKKGTN-------ETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEK 70 (124)
T ss_dssp CCSCCCHHHHHHHH------HHHHHHHHHSEEEESHH-------HHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHT
T ss_pred cCCCCCHHHHHHHH------HHHHHHHHhCCccCCHH-------HHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHc
Confidence 34566655433321 37999999999999999 699999999999999 7776 599999999999
Q ss_pred CCcEEEEccCcchhhhhhCCCcceEEEEEecCCchHHHhc
Q psy16179 101 KTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRS 140 (145)
Q Consensus 101 kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD~G~SdIL~~ 140 (145)
+||+++. +|+.+||++||++|+++++||+|.||++.+..
T Consensus 71 ~Vp~~~v-~sk~eLG~a~G~~~~~~~vaI~d~g~a~~~~~ 109 (124)
T 2fc3_A 71 KIPYVYV-PSKKRLGEAAGIEVAAASVAIIEPGDAETLVR 109 (124)
T ss_dssp TCCEEEE-SCHHHHHHHTTCSSCCSEEEEEECGGGHHHHH
T ss_pred CCCEEEE-CCHHHHHHHhCCCCCEEEEEEECcchHHHHHH
Confidence 9997555 99999999999999999999999999987643
No 19
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=99.78 E-value=1.3e-19 Score=135.90 Aligned_cols=82 Identities=12% Similarity=0.091 Sum_probs=77.4
Q ss_pred hhhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----e-ccchhHHHHHHHHhhCCcEEEEccCcchhhhhhC-
Q psy16179 46 LVLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----S-CVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACG- 119 (145)
Q Consensus 46 ~~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----a-P~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcG- 119 (145)
.+||+|.++|++.+|.+ +++|++++|+|+||| | |++++++|+++|+.++||++++ +++.+||++||
T Consensus 14 ~~L~~A~~~gkl~~G~~-------~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v-~sk~~LG~a~G~ 85 (126)
T 2xzm_U 14 KVIKSSNCQDAISKGLH-------EVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSV-PKRASLGEYLGH 85 (126)
T ss_dssp HHHTTTTSSSCEEESHH-------HHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEE-SCSHHHHHHHTC
T ss_pred HHHHHHHHcCCEeecHH-------HHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEE-CCHHHHHHHHCC
Confidence 46899999999999999 699999999999999 7 6799999999999999999988 89999999999
Q ss_pred ----------CCcceEEEEEecCCch
Q psy16179 120 ----------KYFRVCTLSITDAGDS 135 (145)
Q Consensus 120 ----------K~FRVSvLAItD~G~S 135 (145)
|.|++|+++|+|+|++
T Consensus 86 ~k~d~~g~~rk~v~~s~vaI~d~g~~ 111 (126)
T 2xzm_U 86 FTANAKGEIKKVKGCSSLAIRKYAPE 111 (126)
T ss_dssp CCBCTTCCBSCCCCCCEEEESSCCTT
T ss_pred CccccccCcCceeeEEEEEEEecCcc
Confidence 4899999999999998
No 20
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=99.75 E-value=5.4e-19 Score=130.35 Aligned_cols=84 Identities=12% Similarity=0.169 Sum_probs=75.9
Q ss_pred hhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----eccc-hhHHHHHHHHhhCCcEEEEccCcchhhhhhCCC
Q psy16179 47 VLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVY-RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 47 ~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~n-tKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
.|++| |++.+|.+ +|.+++++|+|+||| |+|+ .+++|+++|+.++||++++ +++.+||++||++
T Consensus 23 ll~~A---gkl~~G~~-------~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v-~sk~eLG~a~G~~ 91 (120)
T 1xbi_A 23 AVAKA---QKIKKGAN-------EVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYV-ASKQDLGKAAGLE 91 (120)
T ss_dssp HHHTC---SEEEESHH-------HHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEE-SCHHHHHHHTTCS
T ss_pred HHHHc---CCccccHH-------HHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEe-CCHHHHHHHhCCC
Confidence 56666 99999999 699999999999999 7776 5999999999999996555 9999999999999
Q ss_pred cceEEEEEecCCchHHHhcC
Q psy16179 122 FRVCTLSITDAGDSDIIRSM 141 (145)
Q Consensus 122 FRVSvLAItD~G~SdIL~~l 141 (145)
|+++++||+|.|+++.+..+
T Consensus 92 ~~~s~vaI~d~g~a~~l~~l 111 (120)
T 1xbi_A 92 VAASSVAIINEGDAEELKVL 111 (120)
T ss_dssp SCCSEEEEEECSCHHHHHHH
T ss_pred CCEEEEEEeccchHHHHHHH
Confidence 99999999999999987654
No 21
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=99.57 E-value=9.1e-16 Score=118.37 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=78.0
Q ss_pred hhhHHHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEE----e-ccchhHHHHHHHH--hhCCcEEEEccCcchhhhhh
Q psy16179 46 LVLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----S-CVYRKSEIEYYAM--LAKTGVHHYTGNNIELGTAC 118 (145)
Q Consensus 46 ~~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----a-P~ntKkkIEyyAk--L~kVPV~~y~Gtn~ELG~Ac 118 (145)
-+||+|.++|++..|.+ ++.|++++|+|+||+ | |++.++.|+++|. .++||++.+ .|+.+||++|
T Consensus 30 ~vLk~A~~~g~l~~G~~-------et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i~V-~s~keLG~a~ 101 (143)
T 3u5c_M 30 VVLRTALVHDGLARGLR-------ESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKV-ADAKQLGEWA 101 (143)
T ss_dssp HHHHHHHHTTCEEESHH-------HHHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCCCC-SCHHHHHHHS
T ss_pred HHHHHHHHcCCEeEcHH-------HHHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEEEE-CCHHHHhHHh
Confidence 47999999999999999 699999999999999 6 5889999999999 999999999 7999999999
Q ss_pred C--------CCcc---eEEEEEecCCchHHHh
Q psy16179 119 G--------KYFR---VCTLSITDAGDSDIIR 139 (145)
Q Consensus 119 G--------K~FR---VSvLAItD~G~SdIL~ 139 (145)
| |+++ +|+++|+|.|++.-..
T Consensus 102 Gl~k~d~~Gk~rkVv~~s~v~I~d~G~~~~~~ 133 (143)
T 3u5c_M 102 GLGKIDREGNARKVVGASVVVVKNWGAETDEL 133 (143)
T ss_dssp SCCCCSSSSCCSCCCCCSCEEESCCCCCSHHH
T ss_pred CcCccccCCCccccceeEEEEEcccchhhHHH
Confidence 8 5665 6899999999975544
No 22
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.45 E-value=5.8e-14 Score=117.66 Aligned_cols=74 Identities=9% Similarity=-0.018 Sum_probs=67.1
Q ss_pred hCceeechhhhHhhHHHHHhhhcCCCeEEEE----ecc-chhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEE
Q psy16179 54 LSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCV-YRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLS 128 (145)
Q Consensus 54 aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~-ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLA 128 (145)
.|++.+|.+ +|+++|++|+|+||| |++ ..++.+.++|..++||++++ +++.+||++||++ +++++|
T Consensus 133 ~~~L~~G~k-------eV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v-~sk~eLG~A~Gkk-~~s~VA 203 (266)
T 2zkr_f 133 PPVLRAGVN-------TVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCII-KGKARLGHLVHRK-TCTTVA 203 (266)
T ss_dssp CCCCCBSHH-------HHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEE-SCHHHHHHHHTSS-CCSEEE
T ss_pred CCeeeeChH-------HHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEE-CCHHHHHHHhCCC-CceEEE
Confidence 478999999 799999999999999 756 55667899999999999999 9999999999999 777999
Q ss_pred EecCCchH
Q psy16179 129 ITDAGDSD 136 (145)
Q Consensus 129 ItD~G~Sd 136 (145)
|+|.|++|
T Consensus 204 ItD~G~eD 211 (266)
T 2zkr_f 204 FTQVNSED 211 (266)
T ss_dssp ETTCSSTT
T ss_pred EeecCcch
Confidence 99999874
No 23
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=99.36 E-value=4.6e-13 Score=99.31 Aligned_cols=73 Identities=10% Similarity=-0.012 Sum_probs=64.4
Q ss_pred CceeechhhhHhhHHHHHhhhcCCCeEEEE----eccc-hhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEE
Q psy16179 55 SKLFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVY-RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSI 129 (145)
Q Consensus 55 Gk~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~n-tKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAI 129 (145)
..+.+|.+ +|.+++++|+|+||+ ++|+ ..+.+..+|..++||++++ +++.+||++||++. .++++|
T Consensus 24 ~~l~~G~~-------~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v-~sk~~LG~a~G~k~-~a~vai 94 (113)
T 3jyw_G 24 YAVKYGLN-------HVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIV-KGKARLGTLVNQKT-SAVAAL 94 (113)
T ss_dssp SCEEESHH-------HHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEEC-SCSTTTHHHHCSSS-CCSEEE
T ss_pred chhhchHH-------HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEE-CCHHHHHHHHCCCC-cEEEEE
Confidence 45678999 799999999999999 7664 5788999999999999988 88999999999995 559999
Q ss_pred ecCCchH
Q psy16179 130 TDAGDSD 136 (145)
Q Consensus 130 tD~G~Sd 136 (145)
+|.|+.|
T Consensus 95 ~d~~~ed 101 (113)
T 3jyw_G 95 TEVRAED 101 (113)
T ss_dssp ECSCSST
T ss_pred EeCCHHh
Confidence 9999754
No 24
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=99.29 E-value=1.5e-12 Score=108.76 Aligned_cols=71 Identities=10% Similarity=0.027 Sum_probs=62.3
Q ss_pred eeechhhhHhhHHHHHhhhcCCCeEEEE----eccchhHH-HHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEec
Q psy16179 57 LFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVYRKSE-IEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITD 131 (145)
Q Consensus 57 ~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~ntKkk-IEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD 131 (145)
+..|.+ +|+++|++|+|+||| |++++..+ +.++|..++||++++ +++.+||++||+. +++++||+|
T Consensus 132 lk~G~k-------eV~KaIekgKAkLVVIA~DadP~eivk~LpaLC~k~gVPy~~V-~sK~eLG~A~Gkk-~~s~VAItD 202 (256)
T 3izc_H 132 VKYGLN-------HVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIV-KGKARLGTLVNQK-TSAVAALTE 202 (256)
T ss_dssp EEESHH-------HHHHHHHHTCCSEEEEESCCSSGGGTTHHHHHHHHHTCCEEEE-SCHHHHHHHTTCS-SCCSEEEES
T ss_pred hhccHH-------HHHHHHHhCcceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEE-CCHHHHHHHhCCC-CcEEEEeec
Confidence 357999 799999999999999 87765554 599999999998866 9999999999999 567999999
Q ss_pred CCchH
Q psy16179 132 AGDSD 136 (145)
Q Consensus 132 ~G~Sd 136 (145)
.|++|
T Consensus 203 ~g~eD 207 (256)
T 3izc_H 203 VRAED 207 (256)
T ss_dssp SCCSC
T ss_pred CChhh
Confidence 99765
No 25
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=98.82 E-value=5.1e-09 Score=87.48 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=62.2
Q ss_pred eeechhhhHhhHHHHHhhhcCCCeEEEE----eccc-hhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEec
Q psy16179 57 LFRNQEMEIHLCLSFLSKMQCPNSVWVL----SCVY-RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITD 131 (145)
Q Consensus 57 ~~~G~~~~i~~~~~VlkaiK~gkAkLVI----aP~n-tKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD 131 (145)
+..|.+ .|.++|++|+|+||| |+|+ ....+..+|..++||++++ .++.+||++||+. +.++++|+|
T Consensus 125 lk~Gvn-------eVtKaIekgKAqLVVIA~DvdPielv~~LPaLCee~~VPY~~V-~sK~~LG~avGrK-t~s~Vaitd 195 (255)
T 4a17_F 125 LKYGLN-------HITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFV-KGKAALGKLVNKK-TATAVALTE 195 (255)
T ss_dssp EEECHH-------HHHHHHHTSCCSEEEEESCCSSTHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHTSS-CCSEEEECC
T ss_pred eecchH-------HHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHcCCCEEEE-CCHHHHHHHhCCC-cceEEEeec
Confidence 457888 699999999999999 5444 5667899999999999999 7999999999998 567999999
Q ss_pred CCchH
Q psy16179 132 AGDSD 136 (145)
Q Consensus 132 ~G~Sd 136 (145)
.|..|
T Consensus 196 v~~ED 200 (255)
T 4a17_F 196 VRNED 200 (255)
T ss_dssp CCHHH
T ss_pred cCHHH
Confidence 99875
No 26
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=98.75 E-value=2.5e-08 Score=78.58 Aligned_cols=82 Identities=12% Similarity=-0.017 Sum_probs=71.8
Q ss_pred hhhHHHHhhCceeechhhhHhhHHHHHhhh--cCCCeEEEE----e-ccch------hHHHHHHHHhhCCcEEEEccCcc
Q psy16179 46 LVLKTIITLSKLFRNQEMEIHLCLSFLSKM--QCPNSVWVL----S-CVYR------KSEIEYYAMLAKTGVHHYTGNNI 112 (145)
Q Consensus 46 ~~~k~a~~aGk~~~G~~~~i~~~~~Vlkai--K~gkAkLVI----a-P~nt------KkkIEyyAkL~kVPV~~y~Gtn~ 112 (145)
-+||.|...+++..|-. .+.|++ .+|++++|+ | ++.. .+.++.+|...+||++.. .|+.
T Consensus 25 evLk~A~~~~~l~~G~k-------Et~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i~V-~s~k 96 (165)
T 2kg4_A 25 EVLSKALSQRTITVGVY-------EAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRV-SNPG 96 (165)
T ss_dssp HHHHHHHHHTCEEECGG-------GHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEE-SCHH
T ss_pred HHHHHHHHcCCeeecHH-------HHHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEEEE-CCHH
Confidence 37999999999999999 589999 999999999 3 2455 777999999999999999 8999
Q ss_pred hhhhhhCC--------------CcceEEEEEecCCch
Q psy16179 113 ELGTACGK--------------YFRVCTLSITDAGDS 135 (145)
Q Consensus 113 ELG~AcGK--------------~FRVSvLAItD~G~S 135 (145)
+||++||- +-..|+++|+|.|..
T Consensus 97 ~LG~a~Gi~~~~~~~~~d~~g~~r~~scv~V~~~g~~ 133 (165)
T 2kg4_A 97 RLAELLLLETDAGPAASEGAEQPPDLHCVLVTNPHSS 133 (165)
T ss_dssp HHHHHHHHTTTCSSCCCCSSCCCSCSCEEEEECCSSC
T ss_pred HHHHHHCCcccccccccccCCCcccceEEEEeccccc
Confidence 99999994 334789999999977
No 27
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=97.73 E-value=4.4e-05 Score=63.96 Aligned_cols=70 Identities=9% Similarity=-0.006 Sum_probs=60.6
Q ss_pred eeechhhhHhhHHHHHhhhcCCCeEEEE-----eccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEec
Q psy16179 57 LFRNQEMEIHLCLSFLSKMQCPNSVWVL-----SCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITD 131 (145)
Q Consensus 57 ~~~G~~~~i~~~~~VlkaiK~gkAkLVI-----aP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD 131 (145)
+..|-. .|.+.+.+++|+||+ -|.+...-+...|...+||+.+. .+..+||+++|+. +.++++++|
T Consensus 128 lk~Gvn-------eVTklVE~kKAqLVVIA~DVdPiElV~fLPaLC~k~gVPY~iV-k~KarLG~~vgrK-tct~Va~t~ 198 (258)
T 3iz5_H 128 VKYGLN-------HVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIV-KGKARLGSIVHKK-TASVLCLTT 198 (258)
T ss_dssp EEESHH-------HHHHHHHTTCEEEEEEESCCSSTHHHHHHHHHHTTTTCCEEEE-SCHHHHHHHTTCS-SCCSEEEEE
T ss_pred eecccH-------HHHHHHHcCcceEEEEeCCCChHHHHhHHHHHHHhcCCCeEEE-CCHHHHHHHhCCc-cceEEEEEe
Confidence 345766 689999999999999 56677788899999999999988 6888999999998 577999999
Q ss_pred CCch
Q psy16179 132 AGDS 135 (145)
Q Consensus 132 ~G~S 135 (145)
.|+.
T Consensus 199 v~~e 202 (258)
T 3iz5_H 199 VKNE 202 (258)
T ss_dssp SCCS
T ss_pred cCHH
Confidence 9874
No 28
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=97.35 E-value=0.00091 Score=53.02 Aligned_cols=82 Identities=10% Similarity=0.063 Sum_probs=68.7
Q ss_pred hhhHHHHhhCceeechhhhHhhHHHHHhhhcC--CCeEEEE-ecc-----c-----hhHHHHHHHHhhCCcEEEEccCcc
Q psy16179 46 LVLKTIITLSKLFRNQEMEIHLCLSFLSKMQC--PNSVWVL-SCV-----Y-----RKSEIEYYAMLAKTGVHHYTGNNI 112 (145)
Q Consensus 46 ~~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~--gkAkLVI-aP~-----n-----tKkkIEyyAkL~kVPV~~y~Gtn~ 112 (145)
.|||+|+..+.+..|=. ...|++-+ .+|.|-+ +.+ + -.+-|+-+|...+||++.. .++.
T Consensus 36 eVLk~Al~~dgL~~Gl~-------EaaKaLd~~p~~a~LCvLA~dc~~e~D~alqmy~kLVeAlC~E~~I~LIkV-~d~k 107 (167)
T 3ffm_A 36 ELLLSAQRQGCLTAGVY-------ESAKVLNVDPDNVTFCVLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRV-GDVQ 107 (167)
T ss_dssp HHHHHHHHTTCEEESHH-------HHHHHHHHCGGGEEEEEEECCGGGTTCHHHHHHHHHHHHHHHHTTCEEEEE-SCHH
T ss_pred HHHHHHHHhCCccccHH-------HHHHHhccCCCeEEEEEEeCCCCcccchhHHHHHHHHHHHHhhcCCCeEEe-CCcc
Confidence 58999999999999988 56677765 4777777 333 2 3889999999999999999 7999
Q ss_pred hhhhhhCC------CcceEEEEEecCCch
Q psy16179 113 ELGTACGK------YFRVCTLSITDAGDS 135 (145)
Q Consensus 113 ELG~AcGK------~FRVSvLAItD~G~S 135 (145)
.||..+|+ +-..|++.|+|.|+.
T Consensus 108 kLgew~G~~~~~~k~~~csCVlVtd~ge~ 136 (167)
T 3ffm_A 108 RLAAIVGAGEEAGAPGDLHCILISNPNED 136 (167)
T ss_dssp HHHHHHTTSCCSSSCSCCSEEEEECSSSS
T ss_pred hHHHHhCcCCCCCCCCccEEEEECCCCcc
Confidence 99999995 456899999999984
No 29
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=97.21 E-value=0.00094 Score=51.86 Aligned_cols=82 Identities=10% Similarity=0.063 Sum_probs=65.3
Q ss_pred hhhHHHHhhCceeechhhhHhhHHHHHhhhcCC--CeEEEE----ec-------cchhHHHHHHHHhhCCcEEEEccCcc
Q psy16179 46 LVLKTIITLSKLFRNQEMEIHLCLSFLSKMQCP--NSVWVL----SC-------VYRKSEIEYYAMLAKTGVHHYTGNNI 112 (145)
Q Consensus 46 ~~~k~a~~aGk~~~G~~~~i~~~~~VlkaiK~g--kAkLVI----aP-------~ntKkkIEyyAkL~kVPV~~y~Gtn~ 112 (145)
.|||+|+.-+.+..|=. -..|++-+. +|.|-+ |. +.-.+-||-+|...+||++.. .++.
T Consensus 15 eVLk~Al~~dgL~~Gl~-------EaaKaLdk~p~~a~lCvLA~dcd~e~D~a~~~y~kLveAlC~E~~I~lIkV-dd~k 86 (146)
T 3cg6_A 15 ELLLSAQRQGCLTAGVY-------ESAKVLNVDPDNVTFCVLAADEEDEGDIALQIHFTLIQAFCCENDIDIVRV-GDVQ 86 (146)
T ss_dssp HHHHHHHHHTCEEESHH-------HHHHHHHHCGGGEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCEEEEE-CCHH
T ss_pred HHHHHHHHhCCccccHH-------HHHHHHhcCCCeEEEEEecCCCccccchhHHHHHHHHHHHHhhcCCCeEEe-Cchh
Confidence 48999999999999988 566777775 787777 43 256778999999999999999 7999
Q ss_pred hhhhhhCC------CcceEEEEEecCCch
Q psy16179 113 ELGTACGK------YFRVCTLSITDAGDS 135 (145)
Q Consensus 113 ELG~AcGK------~FRVSvLAItD~G~S 135 (145)
.||..+|| |-..|++.|+|.|..
T Consensus 87 kLgew~Gk~d~~g~pr~~sCvvV~d~g~e 115 (146)
T 3cg6_A 87 RLAAIVGSDEEGGAPGDLHCILISNPNED 115 (146)
T ss_dssp HHHHHC----------CCSEEEEECCC--
T ss_pred HHHHHhCCcCCCCCCCCCEEEEEecCCcc
Confidence 99999995 445789999999964
No 30
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=61.95 E-value=9 Score=27.89 Aligned_cols=44 Identities=11% Similarity=-0.052 Sum_probs=32.3
Q ss_pred HHHhhhcCCCeEEEE-eccc------hhHHHHHHHHhhCCcEEEEccCcchhhhh
Q psy16179 70 SFLSKMQCPNSVWVL-SCVY------RKSEIEYYAMLAKTGVHHYTGNNIELGTA 117 (145)
Q Consensus 70 ~VlkaiK~gkAkLVI-aP~n------tKkkIEyyAkL~kVPV~~y~Gtn~ELG~A 117 (145)
+++..++.|+..||| .|+. .=..|+..|-.++||++ |+.+...+
T Consensus 87 ~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~----T~~~tA~a 137 (143)
T 2yvq_A 87 SIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLL----TNFQVTKL 137 (143)
T ss_dssp CHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEE----CSHHHHHH
T ss_pred cHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeE----cCHHHHHH
Confidence 467789999999999 5554 22468888999999983 44554443
No 31
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=57.44 E-value=9.5 Score=28.43 Aligned_cols=36 Identities=3% Similarity=-0.126 Sum_probs=29.7
Q ss_pred HHHhhhcCCCeEEEE-ecc--chh------HHHHHHHHhhCCcEE
Q psy16179 70 SFLSKMQCPNSVWVL-SCV--YRK------SEIEYYAMLAKTGVH 105 (145)
Q Consensus 70 ~VlkaiK~gkAkLVI-aP~--ntK------kkIEyyAkL~kVPV~ 105 (145)
++...|+.|+..||| .|+ ..+ ..|...|..++||+.
T Consensus 65 ~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~ 109 (134)
T 2xw6_A 65 QMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLA 109 (134)
T ss_dssp HHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEE
T ss_pred hHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcCCCeE
Confidence 588999999999999 554 322 569999999999984
No 32
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=53.13 E-value=61 Score=23.31 Aligned_cols=62 Identities=10% Similarity=-0.092 Sum_probs=42.0
Q ss_pred hhcCCCeEEEE-ecc-chhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEecCCchHHHhc
Q psy16179 74 KMQCPNSVWVL-SCV-YRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRS 140 (145)
Q Consensus 74 aiK~gkAkLVI-aP~-ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD~G~SdIL~~ 140 (145)
-...|..|.|+ +++ +.-.++...|+..++|.+.+... |..==-|-...++|| -||..+.+..
T Consensus 50 W~~~g~~Kvvlk~~~e~el~~l~~~a~~~gl~~~~i~DA----G~Tei~~gt~Tvlai-gP~~~~~vd~ 113 (121)
T 1wn2_A 50 WFREGQKKVVVKVESEEELFKLKAEAEKLGLPNALIRDA----GLTEIPPGTVTVLAV-GPAPEEIVDK 113 (121)
T ss_dssp HHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECT----TCTTSCTTCEEEEEE-EEEEHHHHHH
T ss_pred HHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcC----CccccCCCCEEEEEe-ccCCHHHHHH
Confidence 34689999999 655 66778888889899998777322 221111335558887 7777777654
No 33
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=50.27 E-value=19 Score=27.40 Aligned_cols=45 Identities=7% Similarity=-0.120 Sum_probs=33.5
Q ss_pred HHHhhhcCCCeEEEE-ecc--chh------HHHHHHHHhhCCcEEEEccCcchhhhhh
Q psy16179 70 SFLSKMQCPNSVWVL-SCV--YRK------SEIEYYAMLAKTGVHHYTGNNIELGTAC 118 (145)
Q Consensus 70 ~VlkaiK~gkAkLVI-aP~--ntK------kkIEyyAkL~kVPV~~y~Gtn~ELG~Ac 118 (145)
++...|+.|+..||| .|+ ... ..|...|-.++||+. ||.+-..|.
T Consensus 73 ~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~----T~latA~a~ 126 (152)
T 1b93_A 73 QVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVA----TNVATADFI 126 (152)
T ss_dssp HHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEE----SSHHHHHHH
T ss_pred hHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEE----eCHHHHHHH
Confidence 588999999999999 554 322 458999999999983 455544443
No 34
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=49.24 E-value=19 Score=28.24 Aligned_cols=45 Identities=4% Similarity=-0.184 Sum_probs=33.8
Q ss_pred HHHhhhcCCCeEEEE-ecc--chh------HHHHHHHHhhCCcEEEEccCcchhhhhh
Q psy16179 70 SFLSKMQCPNSVWVL-SCV--YRK------SEIEYYAMLAKTGVHHYTGNNIELGTAC 118 (145)
Q Consensus 70 ~VlkaiK~gkAkLVI-aP~--ntK------kkIEyyAkL~kVPV~~y~Gtn~ELG~Ac 118 (145)
++...|+.|+..||| .|+ ... ..|...|-.++||+. ||.+-..|.
T Consensus 89 qI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~----TnlatA~A~ 142 (178)
T 1vmd_A 89 QIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVA----ITRSTADFL 142 (178)
T ss_dssp HHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEE----SSHHHHHHH
T ss_pred hHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEE----eCHHHHHHH
Confidence 588999999999999 554 322 569999999999983 555544443
No 35
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=47.23 E-value=64 Score=21.88 Aligned_cols=58 Identities=5% Similarity=-0.130 Sum_probs=41.9
Q ss_pred HhhHHHHHhhhcCCCeEEEEeccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCc
Q psy16179 65 IHLCLSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYF 122 (145)
Q Consensus 65 i~~~~~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~F 122 (145)
+...-...++.+.....+|-.+.+...+++.|++.++.+...+.+...++.++.|-..
T Consensus 55 ~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 112 (163)
T 3gkn_A 55 GLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIK 112 (163)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcc
Confidence 3333445566665556666666678899999999999887777777888888887643
No 36
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=47.19 E-value=59 Score=23.26 Aligned_cols=57 Identities=5% Similarity=-0.030 Sum_probs=38.5
Q ss_pred HhhHHHHHhhhcCCCe-EEEEeccchhHHHHHHHHhhCCc--EEEEccCcchhhhhhCCC
Q psy16179 65 IHLCLSFLSKMQCPNS-VWVLSCVYRKSEIEYYAMLAKTG--VHHYTGNNIELGTACGKY 121 (145)
Q Consensus 65 i~~~~~VlkaiK~gkA-kLVIaP~ntKkkIEyyAkL~kVP--V~~y~Gtn~ELG~AcGK~ 121 (145)
+.......++.+...+ .+|-.+.+.....+.+++..+++ +-.....+.+++.+.|-.
T Consensus 52 ~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~ 111 (167)
T 2wfc_A 52 LPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVDME 111 (167)
T ss_dssp HHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTTCE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHHcCCc
Confidence 3333344455665556 66555566777888889888887 666667778888888754
No 37
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=46.41 E-value=69 Score=24.60 Aligned_cols=55 Identities=7% Similarity=-0.005 Sum_probs=39.1
Q ss_pred hHhhHHHHHhhhcC----CCeEEEE---eccchhHHHHHHHHhhCCcEEEEcc--CcchhhhhhC
Q psy16179 64 EIHLCLSFLSKMQC----PNSVWVL---SCVYRKSEIEYYAMLAKTGVHHYTG--NNIELGTACG 119 (145)
Q Consensus 64 ~i~~~~~VlkaiK~----gkAkLVI---aP~ntKkkIEyyAkL~kVPV~~y~G--tn~ELG~AcG 119 (145)
-++.++..++.++. .+++|+| .++....+++.++...+ .++.|.| +..++.....
T Consensus 266 g~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~ 329 (439)
T 3fro_A 266 GVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG 329 (439)
T ss_dssp CHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHH
Confidence 45666777777766 6899999 33333488888888888 8888888 7777755443
No 38
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=44.04 E-value=44 Score=23.76 Aligned_cols=61 Identities=10% Similarity=-0.051 Sum_probs=39.9
Q ss_pred hcCCCeEEEE-ecc-chhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEecCCchHHHhc
Q psy16179 75 MQCPNSVWVL-SCV-YRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRS 140 (145)
Q Consensus 75 iK~gkAkLVI-aP~-ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD~G~SdIL~~ 140 (145)
...|..|.|+ +++ +.-.++...|+..++|.+.+... |..==-|-...++|| -||..+.+..
T Consensus 45 ~~~g~~kivlk~~~e~~l~~l~~~a~~~gl~~~~i~DA----G~Tei~~gt~Tvlai-gP~~~~~vd~ 107 (115)
T 2zv3_A 45 LREGQKKVVVKVNSEKELIDIYNKARSEGLPCSIIRDA----GHTQLEPGTLTAVAI-GPEKDEKIDK 107 (115)
T ss_dssp HHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEC----C-------EEEEEEE-EEECHHHHHH
T ss_pred HHCCCeEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeC----CceecCCCCEEEEEe-CcCCHHHHHH
Confidence 4589999999 764 66778888888899997777322 221111335557887 7777777654
No 39
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=41.81 E-value=68 Score=22.75 Aligned_cols=57 Identities=7% Similarity=-0.120 Sum_probs=42.0
Q ss_pred HhhHHHHHhhhcCCCeEEEEeccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCC
Q psy16179 65 IHLCLSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 65 i~~~~~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
+...-...++.+.....+|-.+.+...+++.|+..++++.-.+.+...++..+.|-.
T Consensus 71 l~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~ 127 (179)
T 3ixr_A 71 GLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVI 127 (179)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCE
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCc
Confidence 344445566777666776666667788899999999988777777778888887764
No 40
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=39.61 E-value=63 Score=23.00 Aligned_cols=61 Identities=8% Similarity=-0.066 Sum_probs=41.4
Q ss_pred hcCCCeEEEE-ecc-chhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEecCCchHHHhc
Q psy16179 75 MQCPNSVWVL-SCV-YRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRS 140 (145)
Q Consensus 75 iK~gkAkLVI-aP~-ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD~G~SdIL~~ 140 (145)
...|..|.|+ +++ +.-.++...|+..++|.+.+... |..==.|-...++|| -||..+.+..
T Consensus 47 ~~~g~~kiVlk~~~e~~l~~l~~~a~~~gl~~~~v~DA----G~Tei~~gt~Tvlai-gP~~~~~vd~ 109 (117)
T 1rlk_A 47 YDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQDR----GYTQVEPGTITCIGL-GPDEEEKLDK 109 (117)
T ss_dssp HHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEECC----CSSSSSCCCEEEEEE-EEEEHHHHHH
T ss_pred HHCCCeEEEEecCCHHHHHHHHHHHHHCCCCEEEEEeC----CccCcCCCCEEEEEe-CcCCHHHHHH
Confidence 4689999999 655 66778888888889998777322 221111445557887 7777777654
No 41
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=38.62 E-value=67 Score=22.94 Aligned_cols=62 Identities=8% Similarity=-0.053 Sum_probs=41.6
Q ss_pred hhcCCCeEEEE-ecc-chhHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEecCCchHHHhc
Q psy16179 74 KMQCPNSVWVL-SCV-YRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRS 140 (145)
Q Consensus 74 aiK~gkAkLVI-aP~-ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD~G~SdIL~~ 140 (145)
-...|..|+|+ +++ +.-.++...|+..++|.+.+... |..==-|-...++|| -+|..+.+..
T Consensus 49 W~~~g~~KiVlk~~~e~el~~l~~~a~~~gl~~~~i~DA----G~Tei~~gs~Tvlai-gP~~~~~vd~ 112 (120)
T 1xty_A 49 WLHQGQPKIIVKVNSLDEIISRAKKAETMNLPFSIIEDA----GKTQLEPGTITCLGI-GPAPENLVDS 112 (120)
T ss_dssp HHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECC----SSSSSCTTCEEEEEE-EEEEHHHHHH
T ss_pred HHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcC----CccccCCCCeEEEEe-ccCCHHHHHH
Confidence 35589999999 754 66778888888889998777332 211001334557887 7777777654
No 42
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=36.59 E-value=1.2e+02 Score=22.18 Aligned_cols=57 Identities=12% Similarity=0.024 Sum_probs=40.4
Q ss_pred HhhHHHHHhhhcCCCeE-EEEeccchhHHHHHHHHhhCCc--EEEEccCcchhhhhhCCC
Q psy16179 65 IHLCLSFLSKMQCPNSV-WVLSCVYRKSEIEYYAMLAKTG--VHHYTGNNIELGTACGKY 121 (145)
Q Consensus 65 i~~~~~VlkaiK~gkAk-LVIaP~ntKkkIEyyAkL~kVP--V~~y~Gtn~ELG~AcGK~ 121 (145)
+.......++.+...+. +|-.+.+.....+.+++..+.| +-.....+.+++++.|-.
T Consensus 77 ~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~ 136 (184)
T 3uma_A 77 LPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGME 136 (184)
T ss_dssp HHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCc
Confidence 44444455666765666 4446667777888899999888 777767778899888864
No 43
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=36.21 E-value=1.1e+02 Score=24.01 Aligned_cols=67 Identities=4% Similarity=-0.147 Sum_probs=46.2
Q ss_pred eeechhhhHhhHHHHHhhhcCC--CeEEEE-eccch---hHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEe
Q psy16179 57 LFRNQEMEIHLCLSFLSKMQCP--NSVWVL-SCVYR---KSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSIT 130 (145)
Q Consensus 57 ~~~G~~~~i~~~~~VlkaiK~g--kAkLVI-aP~nt---KkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAIt 130 (145)
++.|.. .|..++++| ..+-|+ .+... -.++...|+..++|++.. +...|-+.++....-+++|+.
T Consensus 14 ~veG~~-------~V~eal~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~i~v~~v--~~~~l~~ls~~~~~qGv~a~~ 84 (253)
T 1gz0_A 14 MIYGIH-------AVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLA--NRQYLDEKSDGAVHQGIIARV 84 (253)
T ss_dssp EEESHH-------HHHHHHHSCGGGEEEEEEESSCCCTTTHHHHHHHHHHTCEEEEE--CSHHHHHTTTSCCCTTEEEEE
T ss_pred EEEEHH-------HHHHHHhcCCCCeEEEEEECCccchhHHHHHHHHHHCCCcEEEe--CHHHHHHHhCCCCCcEEEEEE
Confidence 566777 677888887 344444 33322 246777788889998665 678999999875555678887
Q ss_pred cC
Q psy16179 131 DA 132 (145)
Q Consensus 131 D~ 132 (145)
++
T Consensus 85 ~~ 86 (253)
T 1gz0_A 85 KP 86 (253)
T ss_dssp CC
T ss_pred ec
Confidence 75
No 44
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=36.04 E-value=47 Score=25.01 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=22.2
Q ss_pred hhCceeechhhhHhhHHHHHhhhcCCCeEEEE
Q psy16179 53 TLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVL 84 (145)
Q Consensus 53 ~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVI 84 (145)
..|+++.|.. .|++++.-|.+..+|
T Consensus 43 d~g~~~yG~~-------ev~~Ale~GAVetLl 67 (166)
T 3ir9_A 43 DSGKVAYGES-------QVRANLEINSVDVLL 67 (166)
T ss_dssp CTTCEEESHH-------HHHHHHTTTCEEEEE
T ss_pred CCCcEEEcHH-------HHHHHHHhCCceEEE
Confidence 3699999999 699999999998777
No 45
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=34.54 E-value=1.1e+02 Score=20.82 Aligned_cols=54 Identities=6% Similarity=-0.137 Sum_probs=36.9
Q ss_pred hHHHHHhhhcCCCeEEEEeccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCC
Q psy16179 67 LCLSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 67 ~~~~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
..-...++.+... .+|-.+.+....+..|++.+++++..+.+.+.++..+.|-.
T Consensus 57 ~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 110 (159)
T 2a4v_A 57 GFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAK 110 (159)
T ss_dssp HHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCB
T ss_pred HHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence 3334455566434 44445666777888899999988777767777888887754
No 46
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=31.34 E-value=72 Score=24.54 Aligned_cols=39 Identities=3% Similarity=-0.055 Sum_probs=25.8
Q ss_pred HHHhhhcCC--CeEE--EEeccchhHHHHHHHHhhCCcEEEEcc
Q psy16179 70 SFLSKMQCP--NSVW--VLSCVYRKSEIEYYAMLAKTGVHHYTG 109 (145)
Q Consensus 70 ~VlkaiK~g--kAkL--VIaP~ntKkkIEyyAkL~kVPV~~y~G 109 (145)
.++++++.+ .+.+ |++. ........+|..+++|++.++-
T Consensus 19 ~~l~~l~~~~l~~~I~~Vit~-~~~~~v~~~A~~~gIp~~~~~~ 61 (212)
T 3av3_A 19 AIVDAAKRGDLPARVALLVCD-RPGAKVIERAARENVPAFVFSP 61 (212)
T ss_dssp HHHHHHHTTCCCEEEEEEEES-STTCHHHHHHHHTTCCEEECCG
T ss_pred HHHHHHHhCCCCCeEEEEEeC-CCCcHHHHHHHHcCCCEEEeCc
Confidence 456677776 3555 4443 2234677889999999998754
No 47
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=30.82 E-value=1.3e+02 Score=20.54 Aligned_cols=53 Identities=6% Similarity=-0.107 Sum_probs=40.4
Q ss_pred HHHHhhhcCCCeEEEEeccchhHHHHHHHHhhCCcEEEEccCcchhhhhhCCC
Q psy16179 69 LSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 69 ~~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
-...++.+.....+|..+.+...+++.|+..++.+...+.+.+.++....|-.
T Consensus 53 ~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 105 (161)
T 3drn_A 53 RDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAK 105 (161)
T ss_dssp HHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCC
T ss_pred HHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCC
Confidence 34456666555666665556788999999999999888878888898888764
No 48
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=29.18 E-value=1.4e+02 Score=20.58 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=40.0
Q ss_pred hHhhHHHHHhhhcCCCeE-EEEeccchhHHHHHHHHhhCC--cEEEEccCcchhhhhhCCC
Q psy16179 64 EIHLCLSFLSKMQCPNSV-WVLSCVYRKSEIEYYAMLAKT--GVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 64 ~i~~~~~VlkaiK~gkAk-LVIaP~ntKkkIEyyAkL~kV--PV~~y~Gtn~ELG~AcGK~ 121 (145)
++.......++.+..++. +|-.+.+.....+.|++.++. ++-.....+.+++++.|-.
T Consensus 55 e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
T 1tp9_A 55 HVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLE 115 (162)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHHHHcCcc
Confidence 344444455666655666 555556677788889998888 7776766678888888764
No 49
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=27.81 E-value=1.9e+02 Score=21.66 Aligned_cols=56 Identities=9% Similarity=0.012 Sum_probs=40.4
Q ss_pred HhhHHHHHhhhcCCCe-EEEEeccchhHHHHHHHHhhCCc--EEEEccCcchhhhhhCC
Q psy16179 65 IHLCLSFLSKMQCPNS-VWVLSCVYRKSEIEYYAMLAKTG--VHHYTGNNIELGTACGK 120 (145)
Q Consensus 65 i~~~~~VlkaiK~gkA-kLVIaP~ntKkkIEyyAkL~kVP--V~~y~Gtn~ELG~AcGK 120 (145)
+........+++...+ .++-.+.+.-.....++...+++ +-..+..+.+++++.|-
T Consensus 68 l~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l~~~f~lLsD~~~~va~ayGv 126 (176)
T 4f82_A 68 VPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGL 126 (176)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCCCCCceEEEcCchHHHHHhCC
Confidence 3444455667776667 55556667777788888888887 77777778889888875
No 50
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=25.33 E-value=89 Score=24.11 Aligned_cols=49 Identities=12% Similarity=-0.030 Sum_probs=28.3
Q ss_pred eeechhhhHhhHHHHHhhhcCC----CeEEEEeccchhHHHHHHHHhhCCcEEEEcc
Q psy16179 57 LFRNQEMEIHLCLSFLSKMQCP----NSVWVLSCVYRKSEIEYYAMLAKTGVHHYTG 109 (145)
Q Consensus 57 ~~~G~~~~i~~~~~VlkaiK~g----kAkLVIaP~ntKkkIEyyAkL~kVPV~~y~G 109 (145)
++||.-..+.+ ++.+++.| +..+|++.+. +.....+|..+++|++.++-
T Consensus 6 l~SG~Gs~L~a---Li~~~~~~~~~~~I~~Vvs~~~-~~~~~~~A~~~gIp~~~~~~ 58 (209)
T 1meo_A 6 LISGTGSNLQA---LIDSTREPNSSAQIDIVISNKA-AVAGLDKAERAGIPTRVINH 58 (209)
T ss_dssp EESSSCTTHHH---HHHHHHSTTCSCEEEEEEESST-TCHHHHHHHHTTCCEEECCG
T ss_pred EEECCchHHHH---HHHHHhcCCCCcEEEEEEeCCC-ChHHHHHHHHcCCCEEEECc
Confidence 45666633333 34456665 3344554433 23345789999999998743
No 51
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=25.00 E-value=98 Score=23.87 Aligned_cols=48 Identities=13% Similarity=-0.004 Sum_probs=29.1
Q ss_pred eeechhhhHhhHHHHHhhhcCCC----eEEEEeccchhHHHHHHHHhhCCcEEEEc
Q psy16179 57 LFRNQEMEIHLCLSFLSKMQCPN----SVWVLSCVYRKSEIEYYAMLAKTGVHHYT 108 (145)
Q Consensus 57 ~~~G~~~~i~~~~~VlkaiK~gk----AkLVIaP~ntKkkIEyyAkL~kVPV~~y~ 108 (145)
+.||.-..+ -.++.+++.|+ ..+|++.+ .+.....+|..+++|++.++
T Consensus 6 l~Sg~gsnl---~ali~~~~~~~~~~~i~~Vis~~-~~~~~~~~A~~~gIp~~~~~ 57 (212)
T 1jkx_A 6 LISGNGSNL---QAIIDACKTNKIKGTVRAVFSNK-ADAFGLERARQAGIATHTLI 57 (212)
T ss_dssp EESSCCHHH---HHHHHHHHTTSSSSEEEEEEESC-TTCHHHHHHHHTTCEEEECC
T ss_pred EEECCcHHH---HHHHHHHHcCCCCceEEEEEeCC-CchHHHHHHHHcCCcEEEeC
Confidence 345655222 23556777774 34455443 23345788999999999874
No 52
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=24.93 E-value=88 Score=24.48 Aligned_cols=39 Identities=3% Similarity=0.004 Sum_probs=25.2
Q ss_pred HHHhhhcCCC----eEEEEeccchhHHHHHHHHhhCCcEEEEcc
Q psy16179 70 SFLSKMQCPN----SVWVLSCVYRKSEIEYYAMLAKTGVHHYTG 109 (145)
Q Consensus 70 ~VlkaiK~gk----AkLVIaP~ntKkkIEyyAkL~kVPV~~y~G 109 (145)
.++.+.+.|+ ..+||+ ..-......+|..+++|++.++-
T Consensus 18 ali~~~~~~~l~~eI~~Vis-n~~~a~v~~~A~~~gIp~~~~~~ 60 (211)
T 3p9x_A 18 AIIQSQKAGQLPCEVALLIT-DKPGAKVVERVKVHEIPVCALDP 60 (211)
T ss_dssp HHHHHHHTTCCSSEEEEEEE-SCSSSHHHHHHHTTTCCEEECCG
T ss_pred HHHHHHHcCCCCcEEEEEEE-CCCCcHHHHHHHHcCCCEEEeCh
Confidence 3555676664 344443 22234677899999999998753
No 53
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=24.56 E-value=2.7e+02 Score=23.06 Aligned_cols=61 Identities=10% Similarity=-0.061 Sum_probs=43.6
Q ss_pred HHHhhCceeechhhhHhhHHHHHhhhcCCCeEEEEeccch--hHHHHHH---HHhhCCcEEEEccCcchhhhhh
Q psy16179 50 TIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVLSCVYR--KSEIEYY---AMLAKTGVHHYTGNNIELGTAC 118 (145)
Q Consensus 50 ~a~~aGk~~~G~~~~i~~~~~VlkaiK~gkAkLVIaP~nt--KkkIEyy---AkL~kVPV~~y~Gtn~ELG~Ac 118 (145)
..|..++++.|.. .|.+|+..|.+..++.+++. +++++.. ++.++..+++++. ..+-|.-.
T Consensus 259 ~~l~~d~~~YG~~-------eV~~Ale~GAVetLlV~d~l~rr~~~~~L~e~~~~~G~~V~ivs~-~~e~G~qL 324 (347)
T 2qi2_A 259 VAVKKDMGVYGRD-------QTESALQMGALSDLIITDEMFRTEDGRRSLSIAQTVGTRIHIVSV-SNDPGQIV 324 (347)
T ss_dssp HHHHTTCEEESHH-------HHHHHHHTTCEEEEEEEHHHHTSHHHHHHHHHHHHHTCEEEEECT-TSHHHHHH
T ss_pred HHHhcCCEEEcHH-------HHHHHHHcCCCeEEEEecccccchhHHHHHHHHHHcCCEEEEECC-CCcchHHH
Confidence 3444559999999 79999999999999966664 3335554 4456999999944 44445444
No 54
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=23.91 E-value=94 Score=24.29 Aligned_cols=47 Identities=11% Similarity=-0.063 Sum_probs=27.6
Q ss_pred eeechhhhHhhHHHHHhhhcCCC--eE--EEEec-cchhHHHHHHHHhhCCcEEEEc
Q psy16179 57 LFRNQEMEIHLCLSFLSKMQCPN--SV--WVLSC-VYRKSEIEYYAMLAKTGVHHYT 108 (145)
Q Consensus 57 ~~~G~~~~i~~~~~VlkaiK~gk--Ak--LVIaP-~ntKkkIEyyAkL~kVPV~~y~ 108 (145)
++||.-. +...++.+++.|+ +. +||+. +..+ -..+|..+++|+++++
T Consensus 14 l~SG~gs---nl~all~~~~~~~~~~~I~~Vis~~~~a~--~l~~A~~~gIp~~~~~ 65 (215)
T 3kcq_A 14 LISGRGS---NLEALAKAFSTEESSVVISCVISNNAEAR--GLLIAQSYGIPTFVVK 65 (215)
T ss_dssp EESSCCH---HHHHHHHHTCCC-CSEEEEEEEESCTTCT--HHHHHHHTTCCEEECC
T ss_pred EEECCcH---HHHHHHHHHHcCCCCcEEEEEEeCCcchH--HHHHHHHcCCCEEEeC
Confidence 4566652 2234667787774 44 44442 2222 2357999999999874
No 55
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=23.36 E-value=2.1e+02 Score=22.93 Aligned_cols=68 Identities=7% Similarity=0.006 Sum_probs=41.0
Q ss_pred eeechhhhHhhHHHHHhhhcCC-CeEEEEeccch--hHHHHHHHHhhCCcEEEEccCcchhhhhhCCCcceEEEEEecCC
Q psy16179 57 LFRNQEMEIHLCLSFLSKMQCP-NSVWVLSCVYR--KSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAG 133 (145)
Q Consensus 57 ~~~G~~~~i~~~~~VlkaiK~g-kAkLVIaP~nt--KkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~FRVSvLAItD~G 133 (145)
++-|.. .|..++++| +.+-|+..+.. +.++...|...++|++.. +..+|-+.++....-+++|+.++-
T Consensus 36 lveG~~-------~V~eaL~~~~~i~~l~~~~~~~~~~~l~~~~~~~~~~v~~v--~~~~l~~ls~~~~~qGv~a~~~~~ 106 (277)
T 3nk6_A 36 LIEDTE-------PLMECIRAGVQFIEVYGSSGTPLDPALLDLCRQREIPVRLI--DVSIVNQLFKAERKAKVFGIARVP 106 (277)
T ss_dssp EEESHH-------HHHHHHHTTCCEEEEEEETTSCCCHHHHHHHHHTTCCEEEE--CHHHHTTCC-----CCEEEEEECC
T ss_pred EEEeHH-------HHHHHHhCCCCeEEEEEeCCccCcHHHHHHHHhcCCcEEEE--CHHHHHHhhCCCCCCeEEEEEecC
Confidence 345666 577778876 34434422221 145666677789998766 678899888875556678887654
No 56
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=22.75 E-value=1e+02 Score=22.89 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=26.5
Q ss_pred CeEEEEeccchhHHHHHHHHhhCCcEEEEccCc--------chhhhhhCCC
Q psy16179 79 NSVWVLSCVYRKSEIEYYAMLAKTGVHHYTGNN--------IELGTACGKY 121 (145)
Q Consensus 79 kAkLVIaP~ntKkkIEyyAkL~kVPV~~y~Gtn--------~ELG~AcGK~ 121 (145)
+-.|||+......+....-...++|++.++.++ ..||.++|++
T Consensus 60 ~PDLIi~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~~g~~ 110 (260)
T 2q8p_A 60 KPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRK 110 (260)
T ss_dssp CCSEEEEEGGGHHHHHHHHHHHTSCCEEECCSSHHHHHHHHHHHHHHTTCH
T ss_pred CCCEEEecCccCHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHHhCCh
Confidence 456888554443444333344579988876543 2478899875
No 57
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=22.50 E-value=2.1e+02 Score=20.28 Aligned_cols=57 Identities=5% Similarity=-0.145 Sum_probs=37.2
Q ss_pred HhhHHHHHhhhcCCCeEEEEeccchhHHHHHHHHhh----CCcEEEEccCcchhhhhhCCC
Q psy16179 65 IHLCLSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLA----KTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 65 i~~~~~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~----kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
+...-...++.+..+..+|-.+.+....++.|++.+ +.+.-.+.+.+.++.++.|-.
T Consensus 50 ~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~ 110 (186)
T 1n8j_A 50 LGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNM 110 (186)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCE
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCCc
Confidence 334344555566556666556666677778888877 776655656777888887754
No 58
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=22.31 E-value=2.3e+02 Score=21.15 Aligned_cols=56 Identities=7% Similarity=-0.051 Sum_probs=34.8
Q ss_pred HhhHHHHHhhhcCCCeEEEEeccchhHHHHHHHHhh-------CCcEEEEccCcchhhhhhCC
Q psy16179 65 IHLCLSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLA-------KTGVHHYTGNNIELGTACGK 120 (145)
Q Consensus 65 i~~~~~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~-------kVPV~~y~Gtn~ELG~AcGK 120 (145)
+.......++.+..++.+|-.+.+....++.|++.+ +.++-.+...+.++..+.|-
T Consensus 76 ~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv 138 (221)
T 2c0d_A 76 IIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNV 138 (221)
T ss_dssp HHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCC
Confidence 333334445555455666655556667788888776 56655555666778777775
No 59
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=21.74 E-value=2.4e+02 Score=20.57 Aligned_cols=57 Identities=9% Similarity=-0.069 Sum_probs=40.7
Q ss_pred HhhHHHHHhhhcCCCeEEEEecc--------chhHHHHHHHHhhCCcEEEEccCcchhhhhhCCC
Q psy16179 65 IHLCLSFLSKMQCPNSVWVLSCV--------YRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 65 i~~~~~VlkaiK~gkAkLVIaP~--------ntKkkIEyyAkL~kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
+...-.+.++.+.....+|-.+. ....+++.|+..++++...+.+.+.++....|-.
T Consensus 78 ~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~ 142 (218)
T 3u5r_E 78 REALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAA 142 (218)
T ss_dssp HHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcCCC
Confidence 33334455666654566655332 7889999999999998877778888898888864
No 60
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=21.55 E-value=1.2e+02 Score=23.66 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=27.8
Q ss_pred eeechhhhHhhHHHHHhhhcCCC--e--EEEEec-cchhHHHHHHHHhhCCcEEEEc
Q psy16179 57 LFRNQEMEIHLCLSFLSKMQCPN--S--VWVLSC-VYRKSEIEYYAMLAKTGVHHYT 108 (145)
Q Consensus 57 ~~~G~~~~i~~~~~VlkaiK~gk--A--kLVIaP-~ntKkkIEyyAkL~kVPV~~y~ 108 (145)
++||.-. +...++.+++.|+ + .+||+. +..+. ..+|..+++|+++++
T Consensus 13 l~SG~gs---nl~all~~~~~~~l~~~I~~Visn~~~a~~--l~~A~~~gIp~~~~~ 64 (209)
T 4ds3_A 13 FISGGGS---NMEALIRAAQAPGFPAEIVAVFSDKAEAGG--LAKAEAAGIATQVFK 64 (209)
T ss_dssp EESSCCH---HHHHHHHHHTSTTCSEEEEEEEESCTTCTH--HHHHHHTTCCEEECC
T ss_pred EEECCcH---HHHHHHHHHHcCCCCcEEEEEEECCcccHH--HHHHHHcCCCEEEeC
Confidence 4566652 2234666777764 3 445542 22222 357999999999874
No 61
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=20.73 E-value=1.5e+02 Score=23.26 Aligned_cols=39 Identities=15% Similarity=-0.096 Sum_probs=24.7
Q ss_pred HHHhhhcCC--CeE--EEEeccchhHHHHHHHHhhCCcEEEEcc
Q psy16179 70 SFLSKMQCP--NSV--WVLSCVYRKSEIEYYAMLAKTGVHHYTG 109 (145)
Q Consensus 70 ~VlkaiK~g--kAk--LVIaP~ntKkkIEyyAkL~kVPV~~y~G 109 (145)
.++++++.+ .+. +|++.+ -......+|..+++|++.++-
T Consensus 38 ~~l~~l~~~~~~~~I~~Vvt~~-~~~~~~~~A~~~gIp~~~~~~ 80 (229)
T 3auf_A 38 AILDGCREGRIPGRVAVVISDR-ADAYGLERARRAGVDALHMDP 80 (229)
T ss_dssp HHHHHHHTTSSSEEEEEEEESS-TTCHHHHHHHHTTCEEEECCG
T ss_pred HHHHHHHhCCCCCeEEEEEcCC-CchHHHHHHHHcCCCEEEECc
Confidence 355666666 344 455442 223456789999999998753
No 62
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=20.37 E-value=2.2e+02 Score=19.96 Aligned_cols=54 Identities=7% Similarity=-0.103 Sum_probs=35.4
Q ss_pred HHHHHhhhcCCCeEEEEeccchhHHHHHHHHhh-------CCcEEEEccCcchhhhhhCCC
Q psy16179 68 CLSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLA-------KTGVHHYTGNNIELGTACGKY 121 (145)
Q Consensus 68 ~~~VlkaiK~gkAkLVIaP~ntKkkIEyyAkL~-------kVPV~~y~Gtn~ELG~AcGK~ 121 (145)
.-...++.+..+..+|-.+.+...+...|++.. +.+...+.+.+.++.++.|-.
T Consensus 54 l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 114 (192)
T 2h01_A 54 LDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVL 114 (192)
T ss_dssp HHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCE
T ss_pred HHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCc
Confidence 333445565456666665566667777777766 677666766677888887764
Done!