RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16179
(145 letters)
>gnl|CDD|185450 PTZ00106, PTZ00106, 60S ribosomal protein L30; Provisional.
Length = 108
Score = 111 bits (279), Expect = 9e-33
Identities = 40/52 (76%), Positives = 48/52 (92%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRS 140
R+SEIEYYAML+KTGVHHY GNN +LGTACG++FRV +SITDAGDSDI+R+
Sbjct: 55 RRSEIEYYAMLSKTGVHHYAGNNNDLGTACGRHFRVSVMSITDAGDSDILRA 106
>gnl|CDD|224823 COG1911, RPL30, Ribosomal protein L30E [Translation, ribosomal
structure and biogenesis].
Length = 100
Score = 82.4 bits (204), Expect = 1e-21
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
K +IEYYA L+ V+ Y G ++ELGT CGK FRV L+I D GDSDI+
Sbjct: 49 LKEDIEYYAKLSDIPVYVYEGTSVELGTVCGKPFRVAALAIIDEGDSDIL 98
>gnl|CDD|179205 PRK01018, PRK01018, 50S ribosomal protein L30e; Reviewed.
Length = 99
Score = 62.7 bits (153), Expect = 7e-14
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 90 KSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
K +IEYYA L+ V+ Y G+++ELGT CGK F V L+I D G+SDI+
Sbjct: 47 KEDIEYYAKLSGIPVYEYEGSSVELGTLCGKPFTVSALAIVDPGESDIL 95
>gnl|CDD|216387 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45
family. This family includes: Ribosomal L7A from
metazoa, Ribosomal L8-A and L8-B from fungi, 30S
ribosomal protein HS6 from archaebacteria, 40S ribosomal
protein S12 from eukaryotes, Ribosomal protein L30 from
eukaryotes and archaebacteria. Gadd45 and MyD118.
Length = 95
Score = 51.8 bits (125), Expect = 1e-09
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 90 KSEIEYYAMLAKTGVHHYTGNN-IELGTACGKYFRVCTLSITDAGDSDII 138
+ + V + + ELG ACGK V L+I D GDS I+
Sbjct: 47 VKLLPALCK--EKNVPYVYVPSKKELGEACGKPRPVSALAIKDNGDSKIL 94
>gnl|CDD|224277 COG1358, RPL8A, Ribosomal protein HS6-type (S12/L30/L7a)
[Translation, ribosomal structure and biogenesis].
Length = 116
Score = 30.4 bits (69), Expect = 0.12
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 107 YTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSM 141
Y G+ ELG A GK R ++I D G + + +
Sbjct: 75 YVGSKKELGKAVGKEVRK-VVAIVDKGFAKKLEDL 108
>gnl|CDD|177732 PLN00119, PLN00119, endoglucanase.
Length = 489
Score = 29.5 bits (66), Expect = 0.70
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 12 CWPRPESITTPATT 25
CW RPE +TTP T+
Sbjct: 153 CWMRPEDMTTPRTS 166
>gnl|CDD|166650 PLN03009, PLN03009, cellulase.
Length = 495
Score = 29.2 bits (65), Expect = 0.79
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 12 CWPRPESITTPATTLSLELP 31
CW RPE + TP T ++ P
Sbjct: 149 CWERPEDMDTPRTVYAVNAP 168
>gnl|CDD|215194 PLN02340, PLN02340, endoglucanase.
Length = 614
Score = 29.1 bits (65), Expect = 0.95
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 11 LCWPRPESITTPATTLSLE 29
CW R E +TTP T L+
Sbjct: 151 YCWERAEDMTTPRTAYKLD 169
>gnl|CDD|178497 PLN02909, PLN02909, Endoglucanase.
Length = 486
Score = 27.5 bits (61), Expect = 2.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 12 CWPRPESITTPATTLSLE 29
CW RPE++ TP T L ++
Sbjct: 156 CWVRPENMKTPRTVLEID 173
>gnl|CDD|177832 PLN02175, PLN02175, endoglucanase.
Length = 484
Score = 27.4 bits (60), Expect = 3.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 12 CWPRPESITTPATTLSL 28
CW RPE + TP T S+
Sbjct: 145 CWERPEDMDTPRTVYSV 161
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 27.3 bits (60), Expect = 4.1
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 88 YRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
+ ++++E AML TG+HH N E G R +++I GD+ ++
Sbjct: 1035 WEEAQLEMEAMLEDTGLHH--KRNEEAQDLSGGMQRKLSVAIAFVGDAKVV 1083
>gnl|CDD|224789 COG1877, OtsB, Trehalose-6-phosphatase [Carbohydrate transport
and metabolism].
Length = 266
Score = 26.2 bits (58), Expect = 6.1
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 53 TLSKLFRNQEMEIHL--CLSFLSKM--QCPNSVWVLSC 86
TL+++ + E + LS L + N V ++S
Sbjct: 28 TLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISG 65
>gnl|CDD|215331 PLN02613, PLN02613, endoglucanase.
Length = 498
Score = 26.4 bits (58), Expect = 6.8
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 12 CWPRPESITTPATTLSL 28
CW RPE + TP T +
Sbjct: 148 CWERPEDMDTPRTLYKI 164
>gnl|CDD|235038 PRK02436, xerD, site-specific tyrosine recombinase XerD-like
protein; Reviewed.
Length = 245
Score = 26.1 bits (58), Expect = 7.8
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 36 TSIARISNKVLVLKTIITLSKLFR 59
SI ++ L LK+ +TL K ++
Sbjct: 223 KSIYELARL-LGLKSPVTLEKYYK 245
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.134 0.413
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,925,125
Number of extensions: 570323
Number of successful extensions: 386
Number of sequences better than 10.0: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 20
Length of query: 145
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 57
Effective length of database: 7,034,450
Effective search space: 400963650
Effective search space used: 400963650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.7 bits)