RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16179
(145 letters)
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 97
Score = 80.6 bits (199), Expect = 1e-21
Identities = 33/53 (62%), Positives = 43/53 (81%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSM 141
RKSE+EYYAML+KT V+++ G N ELGTA GK FRV +SI +AGDSDI+ ++
Sbjct: 44 RKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTL 96
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e)
{Archaeon Thermococcus celer [TaxId: 2264]}
Length = 98
Score = 75.9 bits (187), Expect = 1e-19
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
K +IEYYA L+ V+ + G ++ELGT G+ V L++ D G+S I+
Sbjct: 45 IKEDIEYYARLSGIAVYEFEGTSVELGTLLGRPHTVSALAVVDPGESRIL 94
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e)
{Archaeon Thermococcus celer [TaxId: 2264]}
Length = 100
Score = 74.0 bits (182), Expect = 7e-19
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSE 144
RK ++EYYA L+ T V+ + G N+ELGTA GK V +SI DAG+S I+ E
Sbjct: 45 RKEDLEYYARLSGTPVYEFEGTNVELGTAVGKPHTVSVVSILDAGESRILALGGKE 100
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix
[TaxId: 56636]}
Length = 124
Score = 60.2 bits (146), Expect = 3e-13
Identities = 9/50 (18%), Positives = 18/50 (36%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDII 138
K + Y + LG A G +++I + GD++ +
Sbjct: 58 EIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAIIEPGDAETL 107
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 113
Score = 46.7 bits (111), Expect = 3e-08
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSD 136
+ + + Y + +LG A G + +I + G+
Sbjct: 52 IVAHLPLLCEEKNV-PYIYVKSKNDLGRAVGIEVPCASAAIINEGELR 98
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium
parvum [TaxId: 5807]}
Length = 115
Score = 46.4 bits (110), Expect = 4e-08
Identities = 10/54 (18%), Positives = 17/54 (31%)
Query: 88 YRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSM 141
K + + + + LG ACG V +IT S + +
Sbjct: 53 LEILLHLPLVCEDKNTPYVFVRSKVALGRACGVSRPVIAAAITSKDGSSLSSQI 106
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 119
Score = 45.6 bits (108), Expect = 9e-08
Identities = 10/48 (20%), Positives = 16/48 (33%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSD 136
K + +LG A G ++TDAG++D
Sbjct: 58 EIVMHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAAVTDAGEAD 105
>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 115
Score = 42.5 bits (100), Expect = 1e-06
Identities = 9/52 (17%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 94 EYYAMLAKTGVHH-YTGNNIELGTACGKYFRVCTLSITDAGDSDIIRSMPSE 144
+ + G+ + Y + +LG A G +++I + GD++ ++ + +
Sbjct: 59 HLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEGDAEELKVLIEK 110
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 40.3 bits (94), Expect = 1e-05
Identities = 10/49 (20%), Positives = 15/49 (30%)
Query: 89 RKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDI 137
K + + + LG ACG V S+T S +
Sbjct: 61 EIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQL 109
>d2alea1 d.79.3.1 (A:1-126) Small nuclear
ribonucleoprotein-associated protein 1, Snu13p
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 126
Score = 31.4 bits (71), Expect = 0.016
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 96 YAMLAKTGVHHYTGNNIELGTACGKYFRVCTLSITDAGDSDI 137
K + + + + LG ACG V SIT S I
Sbjct: 69 LLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAI 110
>d2iafa1 d.81.2.1 (A:4-148) L-serine dehydratase SdhL, N-terminal
domain {Legionella pneumophila [TaxId: 446]}
Length = 145
Score = 26.1 bits (57), Expect = 1.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 92 EIEYYAMLAKTGVHHYTGNNIELG 115
++E Y LA TG H T I G
Sbjct: 31 KVELYGSLALTGKGHGTDKAILNG 54
>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein
kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 26.1 bits (57), Expect = 1.8
Identities = 7/65 (10%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 34 VWTSIARISNKVLVLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVLSCVYRKSEI 93
V + +++ +K + + N+ + +S++ P V + ++
Sbjct: 24 VVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKL 83
Query: 94 EYYAM 98
Y+ +
Sbjct: 84 -YFGL 87
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria
meningitidis [TaxId: 487]}
Length = 282
Score = 24.5 bits (52), Expect = 6.0
Identities = 11/69 (15%), Positives = 21/69 (30%)
Query: 43 NKVLVLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVLSCVYRKSEIEYYAMLAKT 102
V+ + L+ LF+ + +F+ + W S + +
Sbjct: 181 KDVMQYQDQDILNGLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPV 240
Query: 103 GVHHYTGNN 111
V HY G
Sbjct: 241 AVSHYCGPA 249
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 309
Score = 24.2 bits (52), Expect = 7.7
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 34 VWTSIARISNKVLVLKTIITLSKLFRNQEMEIHLCLSFLSKMQCPNSVWVLSCVYRKSEI 93
V+ + +++V+ +K + K + +I + FL K++ PN++ C R+
Sbjct: 31 VYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTA 90
Query: 94 EYYAM 98
+ M
Sbjct: 91 -WLVM 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.413
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 524,459
Number of extensions: 20588
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 15
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (22.9 bits)