Query psy1618
Match_columns 178
No_of_seqs 117 out of 1056
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 22:48:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04415 NDPk7A Nucleoside diph 100.0 7.2E-45 1.6E-49 279.7 8.3 128 49-178 1-129 (131)
2 cd04418 NDPk5 Nucleoside dipho 100.0 6.7E-44 1.5E-48 274.5 8.4 128 49-178 1-129 (132)
3 PRK14542 nucleoside diphosphat 100.0 1.5E-43 3.3E-48 274.3 8.5 126 48-178 1-129 (137)
4 PRK14541 nucleoside diphosphat 100.0 4.5E-43 9.7E-48 272.5 8.5 126 48-178 1-129 (140)
5 cd04412 NDPk7B Nucleoside diph 100.0 4.8E-43 1E-47 270.2 8.5 128 49-178 1-132 (134)
6 cd04414 NDPk6 Nucleoside dipho 100.0 6.1E-43 1.3E-47 270.1 8.7 128 49-178 1-132 (135)
7 COG0105 Ndk Nucleoside diphosp 100.0 1.3E-42 2.8E-47 264.6 9.3 126 48-178 2-130 (135)
8 PRK14540 nucleoside diphosphat 100.0 1.5E-42 3.2E-47 267.7 9.0 126 48-178 2-130 (134)
9 cd00595 NDPk Nucleoside diphos 100.0 1.3E-42 2.7E-47 267.1 8.5 128 49-178 1-131 (133)
10 cd04416 NDPk_TX NDP kinase dom 100.0 1E-42 2.3E-47 267.5 8.0 128 49-178 1-130 (132)
11 PLN02931 nucleoside diphosphat 100.0 1.3E-42 2.8E-47 279.0 8.7 132 45-178 26-160 (177)
12 PRK14545 nucleoside diphosphat 100.0 1.4E-42 3.1E-47 269.3 8.7 127 47-178 2-131 (139)
13 PTZ00093 nucleoside diphosphat 100.0 1.4E-42 3E-47 272.3 8.6 126 48-178 2-130 (149)
14 cd04413 NDPk_I Nucleoside diph 100.0 5.9E-42 1.3E-46 262.8 8.2 125 49-178 1-128 (130)
15 PRK00668 ndk mulitfunctional n 100.0 6.5E-42 1.4E-46 263.8 8.4 126 48-178 1-129 (134)
16 PF00334 NDK: Nucleoside dipho 100.0 4.1E-41 9E-46 258.7 6.9 125 49-178 1-128 (135)
17 PRK14543 nucleoside diphosphat 100.0 9.8E-41 2.1E-45 266.4 8.7 129 47-178 4-148 (169)
18 PLN02619 nucleoside-diphosphat 100.0 1.2E-40 2.6E-45 276.8 6.9 128 46-178 86-216 (238)
19 smart00562 NDK These are enzym 100.0 7.6E-40 1.6E-44 251.8 8.6 125 49-178 1-128 (135)
20 PRK14544 nucleoside diphosphat 100.0 2.7E-38 5.9E-43 255.0 8.9 129 47-178 2-174 (183)
21 KOG0888|consensus 100.0 8E-39 1.7E-43 251.6 2.3 129 48-178 5-136 (156)
22 COG1799 Uncharacterized protei 64.6 14 0.00031 29.7 4.7 47 47-95 71-117 (167)
23 PF14454 Prok_Ub: Prokaryotic 62.0 2.1 4.6E-05 29.2 -0.4 42 84-136 23-64 (65)
24 TIGR03738 PRTRC_C PRTRC system 55.3 12 0.00026 25.6 2.4 43 83-136 21-63 (66)
25 PF04472 DUF552: Protein of un 41.7 59 0.0013 21.9 4.2 42 52-95 1-42 (73)
26 PF05430 Methyltransf_30: S-ad 28.8 16 0.00035 27.6 -0.4 57 26-82 50-111 (124)
27 COG3473 Maleate cis-trans isom 26.6 89 0.0019 26.4 3.6 38 50-87 119-156 (238)
28 cd04905 ACT_CM-PDT C-terminal 25.7 1.8E+02 0.0039 19.4 4.5 34 51-84 3-36 (80)
29 cd04903 ACT_LSD C-terminal ACT 25.1 1.5E+02 0.0033 18.2 4.0 32 51-82 1-32 (71)
30 cd04906 ACT_ThrD-I_1 First of 23.7 1.3E+02 0.0029 20.5 3.6 39 50-93 41-80 (85)
31 COG1724 Predicted RNA binding 21.2 1.2E+02 0.0026 20.8 2.8 20 63-82 9-28 (66)
No 1
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=7.2e-45 Score=279.67 Aligned_cols=128 Identities=34% Similarity=0.559 Sum_probs=125.6
Q ss_pred eEEEEEEeCccccchhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeecchh
Q psy1618 49 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKAI 128 (178)
Q Consensus 49 E~Tl~lIKPdav~~~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~nAV 128 (178)
|+||+|||||+++++|+||++|+++||.|+++||++||+++|++||. +|++++||++|+++|+|||+++|+|.|+|||
T Consensus 1 erTl~iIKPdav~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~--~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav 78 (131)
T cd04415 1 EKTLALIKPDAYSKIGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYA--EHQSKPFYNELVQFMTSGPIVAMELVGDDAI 78 (131)
T ss_pred CeEEEEECcHHHHhHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhCCCCchHHHHHHHhcCCeEEEEEECCcHH
Confidence 68999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 129 RRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 129 ~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
++||+++||++|..|+...|+|||++||.+.++|+|||||++ +|+|||.+
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~a~~Ei~~ 129 (131)
T cd04415 79 SEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVASAARELEF 129 (131)
T ss_pred HHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999 99999864
No 2
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=6.7e-44 Score=274.50 Aligned_cols=128 Identities=42% Similarity=0.712 Sum_probs=125.5
Q ss_pred eEEEEEEeCccccchhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeecchh
Q psy1618 49 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKAI 128 (178)
Q Consensus 49 E~Tl~lIKPdav~~~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~nAV 128 (178)
|+||+|||||++.++|+||++|.++||.|+++||++||+++|++||. +|.+++||+.|+++|+|||+++|+|.|+|||
T Consensus 1 e~Tl~iIKPda~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~--~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV 78 (132)
T cd04418 1 ERTLAIIKPDAVHKAEEIEDIILESGFTIVQKRKLQLSPEQCSDFYA--EHYGKMFFPHLVAYMSSGPIVAMVLARHNAI 78 (132)
T ss_pred CeEEEEECcHHHhhHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhCCCccHHHHHHHHhcCCeEEEEEecCCHH
Confidence 68999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 129 RRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 129 ~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
++||+++||++|..|+...|+|||++||.+.++|+|||||++ +|+|||.+
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~~~a~~Ei~~ 129 (132)
T cd04418 79 SYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSFSSAEREIRF 129 (132)
T ss_pred HHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999 99999864
No 3
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.5e-43 Score=274.26 Aligned_cols=126 Identities=27% Similarity=0.437 Sum_probs=121.8
Q ss_pred ceEEEEEEeCcccc--chhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~--~~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
+|+||+|||||++. ++|+||++|+++||.|+++||++||+++|++||. +|++++||++|+++|+|||+++|+|.|+
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~--~~~~k~f~~~Lv~~m~sGp~va~~l~g~ 78 (137)
T PRK14542 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYK--VHSARPFYNDLCNYMSSGPIVAAALERD 78 (137)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhcCCccHHHHHHHHhcCCeEEEEEeCC
Confidence 48999999999995 4799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||++||+++||+||..| .|+|||++||.+.++|+|||||++ +|+|||.+
T Consensus 79 nav~~~R~l~Gpt~p~~A---~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~ 129 (137)
T PRK14542 79 NAVLHWREVIGATDPKEA---AAGTIRALYAESKEANAVHGSDSDANAALEISF 129 (137)
T ss_pred CHHHHHHHHhCCCCchhC---CCCCchHHhcCcccceeEECCCCHHHHHHHHHH
Confidence 999999999999999999 699999999999999999999999 99999864
No 4
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=4.5e-43 Score=272.50 Aligned_cols=126 Identities=29% Similarity=0.392 Sum_probs=121.6
Q ss_pred ceEEEEEEeCcccc--chhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~--~~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
+|+||+|||||++. ++|+||++|+++||.|+++||++||+++|++||. +|++++||++|++||+|||+++|+|.|+
T Consensus 1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~--~~~~k~ff~~Lv~~m~sgp~va~~l~g~ 78 (140)
T PRK14541 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYA--VHRERPFYGELVEFMSSGPCVPMILEKE 78 (140)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HHcCCccHHHHHHHHhcCCeEEEEEecC
Confidence 47999999999995 4799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||++||+++||++|..| .|+|||++||++.++|+|||||++ +|+|||.+
T Consensus 79 nav~~~R~l~Gpt~p~~A---~p~siR~~yg~~~~~N~vHgSds~e~A~~Ei~~ 129 (140)
T PRK14541 79 NAVADFRTLIGATDPAEA---AEGTVRKLYADSKGENIVHGSDSAENAAIEAGF 129 (140)
T ss_pred cHHHHHHHHhCCCCchhC---CCCCchHHhcccccceeEECCCCHHHHHHHHHH
Confidence 999999999999999999 699999999999999999999999 99999863
No 5
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=4.8e-43 Score=270.23 Aligned_cols=128 Identities=30% Similarity=0.548 Sum_probs=125.0
Q ss_pred eEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCC-CcccccceeeecCcEEEEEEeec
Q psy1618 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDP-VKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 49 E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~-~~~~~lv~~mtsGpvval~L~g~ 125 (178)
++||+|||||++.+ +|+||++|.++||.|+++||++||+++|++||. .++++ +||+.|+++|+|||+++|+|.|+
T Consensus 1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~--~~~~~~~~~~~l~~~m~sGp~val~l~g~ 78 (134)
T cd04412 1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLE--VYKGVVPELPAMVDELTSGPCIALEIAGE 78 (134)
T ss_pred CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHH--HHcCccchHHHHHHHHhcCCeEEEEEECC
Confidence 57999999999998 899999999999999999999999999999999 99999 99999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||++||+++||++|..|+..+|+|||++||++.++|+|||||++ +|+|||.+
T Consensus 79 nav~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds~~~A~~e~~~ 132 (134)
T cd04412 79 NAVKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDLPEDGPLELKF 132 (134)
T ss_pred cHHHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999 99999864
No 6
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=6.1e-43 Score=270.08 Aligned_cols=128 Identities=39% Similarity=0.644 Sum_probs=123.7
Q ss_pred eEEEEEEeCccccc---hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 49 EYTLALVKPHAFRH---VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 49 E~Tl~lIKPdav~~---~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
|+||+|||||++.+ .|.|++.|.++||.|+++||++||+++|++||. +|.+++||++|+++|+|||+++|+|.|+
T Consensus 1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~--~~~~~~f~~~Lv~~m~sgp~val~l~~~ 78 (135)
T cd04414 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYA--EHKGKFFYDRLVSFMTSGPSWALILAHE 78 (135)
T ss_pred CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhCCCCchHHHHHHHhcCCeEEEEEEcC
Confidence 68999999999988 578888899999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||++||+++||++|..|+...|+|||++||++.++|+|||||++ +|+|||.+
T Consensus 79 naV~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~ 132 (135)
T cd04414 79 NAIKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSPASAQREIAL 132 (135)
T ss_pred CHHHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999 99999864
No 7
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-42 Score=264.58 Aligned_cols=126 Identities=29% Similarity=0.427 Sum_probs=123.7
Q ss_pred ceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
+|+||++||||++.+ +|+||++++++||+|+++||+++++++|..||. .|+++|||++|++||+|||+++++|.|+
T Consensus 2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~--~h~~kpFf~~Lv~fitSgPvv~~VleGe 79 (135)
T COG0105 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYA--EHKGKPFFGELVEFITSGPVVAMVLEGE 79 (135)
T ss_pred cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHH--HHcCCCccHHHHhheecCcEEEEEEecH
Confidence 789999999999997 699999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||+.+|.++|+|||..| +|+|||+.||.+..+|.|||||++ +|+|||.+
T Consensus 80 ~ai~~~R~l~GaTnp~~A---~pGTIRgdfa~~~~~N~vHgSDs~esA~rEIa~ 130 (135)
T COG0105 80 NAISVVRKLMGATNPANA---APGTIRGDFALSVGENVVHGSDSPESAEREIAL 130 (135)
T ss_pred hHHHHHHHHHCCCCcccC---CCCeEeeehhcccCcceEEccCCHHHHhHHhhh
Confidence 999999999999999999 999999999999999999999999 99999975
No 8
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.5e-42 Score=267.69 Aligned_cols=126 Identities=29% Similarity=0.450 Sum_probs=121.9
Q ss_pred ceEEEEEEeCcccc--chhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~--~~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
.|+||+|||||++. ++|+||++|.++||.|+++||++||+++|++||. +|++++||+.|+++|+|||+++|+|.|+
T Consensus 2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~--~~~~k~f~~~L~~~m~sgp~val~l~g~ 79 (134)
T PRK14540 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYE--EHKGKEFYERLINFMTSGRIVAMVIEGE 79 (134)
T ss_pred ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHH--HhCCCccHHHHHHHHccCCeEEEEEeCC
Confidence 68999999999995 4799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||++||+++||++|..| .|+|||+.||.+.++|++||||++ +|.|||.+
T Consensus 80 nav~~~R~l~Gpt~p~~a---~p~siR~~fg~~~~~N~vH~Sds~~~a~~E~~~ 130 (134)
T PRK14540 80 NAISTVRKMIGKTNPAEA---EPGTIRGDFGLYTPANIIHASDSKESAEREIKL 130 (134)
T ss_pred ChHHHHHHHhCCCCcccC---CCCcchhhhcccccceeEECCCCHHHHHHHHHH
Confidence 999999999999999988 799999999999999999999999 99999864
No 9
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=1.3e-42 Score=267.12 Aligned_cols=128 Identities=37% Similarity=0.637 Sum_probs=124.5
Q ss_pred eEEEEEEeCcccc--chhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeecc
Q psy1618 49 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQK 126 (178)
Q Consensus 49 E~Tl~lIKPdav~--~~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~n 126 (178)
|+||+|||||++. ++|+||++|.++||.|+++||+.|++++|++||. .+.+++||++++++|+|||+++|+|.|+|
T Consensus 1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~--~~~~~~~~~~lv~~m~sGp~v~l~l~g~~ 78 (133)
T cd00595 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYV--EHKGRPFFPDLVQFMSSGPVVAMILEKDN 78 (133)
T ss_pred CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHH--HhcCCchHHHHHHHHhcCCeEEEEEecCC
Confidence 5899999999998 5799999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 127 AIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 127 AV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
||++||+++||+||..|+...|+|||++||.+.++|+|||||++ +|.|||.+
T Consensus 79 av~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd~~~~a~~Ei~~ 131 (133)
T cd00595 79 AVGEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSVESAAREIAF 131 (133)
T ss_pred hHHHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 99999863
No 10
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=1e-42 Score=267.52 Aligned_cols=128 Identities=39% Similarity=0.634 Sum_probs=124.4
Q ss_pred eEEEEEEeCccccc-hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeecch
Q psy1618 49 EYTLALVKPHAFRH-VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKA 127 (178)
Q Consensus 49 E~Tl~lIKPdav~~-~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~nA 127 (178)
|+||+|||||++.+ +|+|+++|.++||.|++.||++||+++|++||. .|.+++||++|+++|+|||+++|+|.|+||
T Consensus 1 e~Tl~iIKPdav~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~--~~~~~~~~~~lv~~m~sgp~v~l~l~~~~a 78 (132)
T cd04416 1 EYTLALIKPDAVAEKKDEILEKIKEAGFEILAQKEMVLTEEQAREFYK--EHEEEDYFEDLVEFMTSGPSLILVLSKENA 78 (132)
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhcCCccHHHHHHHHhcCCeEEEEEeCCCH
Confidence 68999999999965 899999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 128 IRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 128 V~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|++||+++||++|..|+...|+|||++||.+.++|++||||++ +|+|||.+
T Consensus 79 v~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sds~~~a~~Ei~~ 130 (132)
T cd04416 79 VEEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSAEEAEKEIDF 130 (132)
T ss_pred HHHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 99999863
No 11
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=1.3e-42 Score=278.99 Aligned_cols=132 Identities=37% Similarity=0.544 Sum_probs=127.2
Q ss_pred cccceEEEEEEeCcccc--chhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEE
Q psy1618 45 LHCYEYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVL 122 (178)
Q Consensus 45 ~~~~E~Tl~lIKPdav~--~~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L 122 (178)
.+..|+||+|||||++. ++|+||++|+++||.|+++||++||+++|++||. +|++++||++|+++|+|||+++|+|
T Consensus 26 ~~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~--~h~gk~ff~~Lv~~mtSGP~vam~L 103 (177)
T PLN02931 26 ASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYA--EHSSRSFFPSLVKYMTSGPVLVMVL 103 (177)
T ss_pred CCcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHH--HhCCCccHHHHHHHHHhCCeEEEEE
Confidence 35689999999999995 4799999999999999999999999999999999 9999999999999999999999999
Q ss_pred eecchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 123 AKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 123 ~g~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
.|+|||++||+++||++|..|+..+|+|||++||.+.++|+|||||++ +|+|||.+
T Consensus 104 ~g~naV~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSDs~e~A~~Ei~~ 160 (177)
T PLN02931 104 EKENAVSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSPESAEREISF 160 (177)
T ss_pred ecCCHHHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 99999863
No 12
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.4e-42 Score=269.33 Aligned_cols=127 Identities=26% Similarity=0.349 Sum_probs=122.4
Q ss_pred cceEEEEEEeCcccc--chhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEee
Q psy1618 47 CYEYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 124 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~--~~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g 124 (178)
..|+||+|||||++. ++|+||++|+++||.|+++||++||+++|++||. +|++++||++|+++|+|||+++|+|.|
T Consensus 2 ~~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~--~~~~k~ff~~Lv~~m~sGp~va~~l~g 79 (139)
T PRK14545 2 AGNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYA--VHAERPFYGELVEFMSRGPIVAAILEK 79 (139)
T ss_pred CcceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHH--HhCCCCchHHHHHHHhcCCEEEEEEec
Confidence 468999999999995 4799999999999999999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 125 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 125 ~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
+|||++||+++||++|..| .|+|||++||++.++|+|||||++ +|.|||.+
T Consensus 80 ~nav~~~R~l~Gpt~p~~A---~p~siR~~yg~~~~~N~vH~Sds~e~A~~Ei~~ 131 (139)
T PRK14545 80 ENAVEDFRTLIGATNPADA---AEGTIRKKYAKSIGENAVHGSDSDENAQIEGAF 131 (139)
T ss_pred CCHHHHHHHHhCCCCcccC---CCCChhHHhcccccceeEECCCCHHHHHHHHHH
Confidence 9999999999999999999 699999999999999999999999 99999863
No 13
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=1.4e-42 Score=272.27 Aligned_cols=126 Identities=29% Similarity=0.443 Sum_probs=121.8
Q ss_pred ceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
.|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||. .|++++||++|+++|+|||+++|++.|+
T Consensus 2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~--~~~gk~ff~~Lv~~m~sGp~val~l~g~ 79 (149)
T PTZ00093 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYK--EHKGKPFFPGLVKYISSGPVVCMVWEGK 79 (149)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHH--HhcCCchHHHHHHHHhcCCEEEEEEeCC
Confidence 689999999999964 799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||++||.++||++|..| .|+|||++||++.++|+|||||++ +|.|||.+
T Consensus 80 nav~~~R~l~Gpt~p~~a---~p~siR~~fg~~~~~NavH~Sds~e~A~~Ei~~ 130 (149)
T PTZ00093 80 NVVKQGRKLLGATNPLES---APGTIRGDFCVDVGRNVIHGSDSVESAKREIAL 130 (149)
T ss_pred CHHHHHHHHhCCCCcccc---CCCcchhhhccccccceeecCCCHHHHHHHHHH
Confidence 999999999999999987 899999999999999999999999 99999863
No 14
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=5.9e-42 Score=262.80 Aligned_cols=125 Identities=30% Similarity=0.472 Sum_probs=120.7
Q ss_pred eEEEEEEeCcccc--chhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeecc
Q psy1618 49 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQK 126 (178)
Q Consensus 49 E~Tl~lIKPdav~--~~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~n 126 (178)
|+||+|||||++. ++|+||++|.++||.|+++||++|++++|++||. ++.+++||++|+++|+|||+++|+|.|+|
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~--~~~~k~~~~~l~~~m~sgp~~al~l~~~n 78 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYA--EHKGKPFFPELVEFMTSGPVVAMVLEGEN 78 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhh--hhcCCchHHHHHHHHhcCCEEEEEEeCCc
Confidence 6899999999995 4799999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 127 AIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 127 AV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
||++||+++||++|+.+ .|+|||++||++.++|+|||||++ +|.|||.+
T Consensus 79 av~~~r~l~Gp~~~~~a---~p~slR~~~G~~~~~NavH~sd~~~~a~~E~~~ 128 (130)
T cd04413 79 AVKTVRKLMGATNPADA---APGTIRGDFALSIGRNIVHGSDSVESAEREIAL 128 (130)
T ss_pred HHHHHHHHhCCCCcccc---CCCCchhhhcccccccceECCCCHHHHHHHHHh
Confidence 99999999999999977 899999999999999999999999 99999864
No 15
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=6.5e-42 Score=263.81 Aligned_cols=126 Identities=29% Similarity=0.443 Sum_probs=121.2
Q ss_pred ceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
+|+||+|||||++.+ +|+||++|.++||.|+++||++||+++|++||. ++.+++||++|+++|+|||+++|+|.|+
T Consensus 1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~--~~~~k~f~~~Lv~~m~sgp~~al~l~g~ 78 (134)
T PRK00668 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYA--EHKEKPFFGELVEFMTSGPVVVMVLEGE 78 (134)
T ss_pred CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHH--HhcCCchHHHHHHHhccCCeEEEEEeCc
Confidence 479999999999954 799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||++||+++||++|..+ .|+|||++||.+.++|+|||||++ +|.|||.+
T Consensus 79 nav~~~r~l~Gp~~p~~a---~p~siR~~~g~~~~~N~vH~sds~~~a~~Ei~~ 129 (134)
T PRK00668 79 NAIAKVRELMGATNPAEA---APGTIRGDFALSIGENVVHGSDSPESAAREIAL 129 (134)
T ss_pred hHHHHHHHHhCCCCcccc---CCCcchhhhccccccccEECCCCHHHHHHHHHH
Confidence 999999999999999877 899999999999999999999999 99999864
No 16
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=4.1e-41 Score=258.68 Aligned_cols=125 Identities=38% Similarity=0.609 Sum_probs=114.1
Q ss_pred eEEEEEEeCcccc--chhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeecc
Q psy1618 49 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQK 126 (178)
Q Consensus 49 E~Tl~lIKPdav~--~~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~n 126 (178)
|+||+|||||++. +.|+||++|.++||.|+++||++|++++|++||. .+.++++|+.++++|+||||++|+|.|+|
T Consensus 1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~--~~~~~~~~~~lv~~m~sgp~v~l~l~g~~ 78 (135)
T PF00334_consen 1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYE--EHKGKPFFDALVDFMSSGPSVALVLEGEN 78 (135)
T ss_dssp EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTG--GGTTSTTHHHHHHHHTSSEEEEEEEESTT
T ss_pred CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEE--eecCCcceecccceeecCCcEEEEeecch
Confidence 7899999999997 4799999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 127 AIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 127 AV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
||++||+++||+||+.| .|+|||++||.+.++|++||||++ +|.|||.+
T Consensus 79 av~~~r~l~Gp~dp~~a---~p~slR~~~g~~~~~N~vH~sd~~~~a~rE~~~ 128 (135)
T PF00334_consen 79 AVEKWRQLCGPTDPEEA---APGSLRARYGTDIIRNAVHGSDSPEDAEREIAF 128 (135)
T ss_dssp HHHHHHHHH--SSGGGS---STTSHHHHH-SSSTG-SEEE-SSHHHHHHHHHH
T ss_pred hhHHHHHhcCCcchhhh---ccccchhceeecCCCCeEECCCCHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999999 99999863
No 17
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=9.8e-41 Score=266.39 Aligned_cols=129 Identities=18% Similarity=0.314 Sum_probs=120.9
Q ss_pred cceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhccc---ccccCCCcccccceeeecCcEEEEE
Q psy1618 47 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFIT---REERDPVKVPRLVCYMVSGPVRVMV 121 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~---~~~~~~~~~~~lv~~mtsGpvval~ 121 (178)
..|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||.+ .+|.+++||++|+++|+|||+++|+
T Consensus 4 ~~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~valv 83 (169)
T PRK14543 4 LIQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVFV 83 (169)
T ss_pred ccceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEEEE
Confidence 4799999999999964 7999999999999999999999999999999942 1689999999999999999999999
Q ss_pred EeecchhHHHHhhcCCCChhhhhhcCCCChhhccccC----------CCceEEeeCCCc-ccccccCC
Q psy1618 122 LAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVN----------DIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 122 L~g~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~----------~~~NavH~Sd~~-~~~re~~l 178 (178)
|.|+|||++||+++||++|..| .|+|||+.||.+ .++|+|||||++ +|+|||.+
T Consensus 84 l~g~naI~~~R~l~Gpt~p~~a---~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SDs~esA~rEi~~ 148 (169)
T PRK14543 84 VEGVESVEVVRKFCGSTEPKLA---IPGTIRGDFSYHSFNYANEKGFSVYNVIHASANEDDALREIPI 148 (169)
T ss_pred EECCCHHHHHHHHhCCCCcccc---CCCcchhhhcccccccccccccceeeEEECCCCHHHHHHHHHH
Confidence 9999999999999999999877 899999999997 799999999999 99999863
No 18
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=1.2e-40 Score=276.82 Aligned_cols=128 Identities=25% Similarity=0.303 Sum_probs=123.7
Q ss_pred ccceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEe
Q psy1618 46 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 123 (178)
Q Consensus 46 ~~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~ 123 (178)
...|+||+|||||++.+ +|+||++|+++||.|+++||++|++++|++||. +|++++||++|++||+|||+++|+|.
T Consensus 86 ~~~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~--ehkgKpFf~~Lv~fMtSGPvvamvL~ 163 (238)
T PLN02619 86 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYH--DLKERPFFNGLCDFLSSGPVVAMVWE 163 (238)
T ss_pred chhceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHH--HhcCCCcHHHHHHHHhcCCeEEEEEE
Confidence 35899999999999997 799999999999999999999999999999999 99999999999999999999999999
Q ss_pred ecchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 124 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 124 g~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|+|+|++||+++||++|..+ .|+|||++||.+.++|+|||||++ +|+|||.+
T Consensus 164 GenaV~~~R~LiGpTdP~~A---~PgTIRg~fG~~~~rNaVHgSDS~EsA~rEI~~ 216 (238)
T PLN02619 164 GEGVIKYGRKLIGATDPQKS---EPGTIRGDLAVVVGRNIIHGSDGPETAKDEINL 216 (238)
T ss_pred CCcHHHHHHHHhCCCCcccc---CCCcchhhhcccccceeeecCCCHHHHHHHHHH
Confidence 99999999999999999977 899999999999999999999999 99999863
No 19
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=7.6e-40 Score=251.82 Aligned_cols=125 Identities=36% Similarity=0.584 Sum_probs=119.6
Q ss_pred eEEEEEEeCcccc--chhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeecc
Q psy1618 49 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQK 126 (178)
Q Consensus 49 E~Tl~lIKPdav~--~~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~n 126 (178)
|+||+|||||++. ++|+||++|.++||.|++.||+.|++++|++||. .+.++++|+.++++|+|||+++|+|.|+|
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~--~~~~~~~~~~lv~~m~sgp~~~l~l~g~n 78 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYA--EHKGKPFFNDLVEFMTSGPVVAMVLEGED 78 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHH--HhcCCchHHHHHHHhhcCCeEEEEEecCC
Confidence 6899999999995 4799999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 127 AIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 127 AV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
||++||+++||++|..+ .|+|||++||.+.++|+|||||++ ++.||+.+
T Consensus 79 av~~~r~l~Gp~~~~~~---~p~slR~~~G~~~~~N~vH~sd~~~~a~~e~~~ 128 (135)
T smart00562 79 AVKTWRTLMGPTDPREA---APGTIRGDFGLDIGRNAVHGSDSPESAEREIAL 128 (135)
T ss_pred HHHHHHHHhCCCChhhc---CCcchHHhhcccccceeEECCCCHHHHHHHHHH
Confidence 99999999999998665 899999999999999999999999 99999863
No 20
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.7e-38 Score=254.97 Aligned_cols=129 Identities=32% Similarity=0.481 Sum_probs=119.2
Q ss_pred cceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccc---------------------------
Q psy1618 47 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITR--------------------------- 97 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~--------------------------- 97 (178)
..|+||+|||||++.+ +|+||++|.++||.|+++||+++|+++|++||...
T Consensus 2 ~~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 81 (183)
T PRK14544 2 PIERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLG 81 (183)
T ss_pred CcceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccccccc
Confidence 4789999999999964 79999999999999999999999999999999821
Q ss_pred ----cccCCCcccccceeeecCcEEEEEEeecchhHHHHhhcCCCChhhhhhcCCCChhhccccCC----------CceE
Q psy1618 98 ----EERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVND----------IMNG 163 (178)
Q Consensus 98 ----~~~~~~~~~~lv~~mtsGpvval~L~g~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~----------~~Na 163 (178)
.+.+++||+.|++||+||||++|+|.|+|||++||.++||++|..| .|+|||+.||.+. ++|+
T Consensus 82 ~~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A---~P~TIR~~fg~~~~~~~~~~~~~~~Na 158 (183)
T PRK14544 82 TDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKA---PPGTIRGDYSIDSPDLAAEEGRVVYNL 158 (183)
T ss_pred cccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCcccc---CCCCchhhhcccccccccccccceeeE
Confidence 2267889999999999999999999999999999999999999888 8999999999874 8999
Q ss_pred EeeCCCc-ccccccCC
Q psy1618 164 SWVLQIL-TKQKEFTL 178 (178)
Q Consensus 164 vH~Sd~~-~~~re~~l 178 (178)
|||||++ +|+|||.+
T Consensus 159 vH~Sds~e~A~rEi~~ 174 (183)
T PRK14544 159 VHASDSPEEAEREIKF 174 (183)
T ss_pred EECCCCHHHHHHHHHH
Confidence 9999999 99999864
No 21
>KOG0888|consensus
Probab=100.00 E-value=8e-39 Score=251.57 Aligned_cols=129 Identities=32% Similarity=0.548 Sum_probs=126.0
Q ss_pred ceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
+|+||++||||++.+ +++||.++.++||.|++.|++.++++++++||. ++++++||+.|+.||+|||++||++.|.
T Consensus 5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~--~~~~~~Ff~~Lv~~m~SGPvvamv~~g~ 82 (156)
T KOG0888|consen 5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYS--DLKSKPFFPGLVEYMSSGPVVAMVLEGD 82 (156)
T ss_pred hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHH--HhcCCccHHHHHHHHhcCcceehhhcCC
Confidence 789999999999976 699999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||+.||+++||++|..|+...|+|||++||.+.++|++||||+. +|+|||.|
T Consensus 83 ~~V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~~sA~rEi~~ 136 (156)
T KOG0888|consen 83 NVVQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSVESAEREIKL 136 (156)
T ss_pred CHHHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999 99999975
No 22
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.56 E-value=14 Score=29.69 Aligned_cols=47 Identities=13% Similarity=0.331 Sum_probs=39.6
Q ss_pred cceEEEEEEeCccccchhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcc
Q psy1618 47 CYEYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFI 95 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~~~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~ 95 (178)
....++++++|..++...+|.+.|+.....++++.. |++++|+++--
T Consensus 71 ~~~s~iv~~ePr~yeda~~ia~~lk~~k~Vvinl~~--m~~~qArRivD 117 (167)
T COG1799 71 QDSSKIVLLEPRKYEDAQEIADYLKNRKAVVINLQR--MDPAQARRIVD 117 (167)
T ss_pred CCceEEEEecCccHHHHHHHHHHHhcCceEEEEeee--CCHHHHHHHHH
Confidence 356899999999999999999999988877777665 58999998754
No 23
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=61.97 E-value=2.1 Score=29.17 Aligned_cols=42 Identities=24% Similarity=0.491 Sum_probs=29.5
Q ss_pred ecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeecchhHHHHhhcC
Q psy1618 84 KFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMG 136 (178)
Q Consensus 84 ~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~nAV~~~r~l~G 136 (178)
.|++++++.||+ . .||+|...-..||.+ .|+.++-.++.-+|
T Consensus 23 ~~spe~V~~~ya--~-----~YPeL~tA~v~gP~v----~~~~~vY~f~~~~G 64 (65)
T PF14454_consen 23 SLSPEEVRDFYA--A-----QYPELTTAEVEGPEV----KGDVAVYTFRRAVG 64 (65)
T ss_pred CCCHHHHHHHHh--h-----hChhhheeeecCCeE----eCCEEEEEEEeccc
Confidence 579999999998 3 489998888888865 45554444444333
No 24
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=55.30 E-value=12 Score=25.60 Aligned_cols=43 Identities=26% Similarity=0.425 Sum_probs=31.1
Q ss_pred eecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeecchhHHHHhhcC
Q psy1618 83 FKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMG 136 (178)
Q Consensus 83 ~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~nAV~~~r~l~G 136 (178)
-.|++++++.||+ . .||+|...-.+||.+ .++.++-+++.-+|
T Consensus 21 p~~spe~V~dfYs--~-----~YPeLttA~v~gP~~----~~~~~~Y~F~~~~G 63 (66)
T TIGR03738 21 PAMSPEQVRDFYS--A-----QYPELLNAEVEGPVV----KGGVQTYTFRRAVG 63 (66)
T ss_pred CCCCHHHHHHHHh--c-----cCchheeeeeeCCeE----eCCEEEEEEEEeec
Confidence 3579999999998 3 489998888888865 45555555555444
No 25
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=41.70 E-value=59 Score=21.92 Aligned_cols=42 Identities=19% Similarity=0.382 Sum_probs=29.4
Q ss_pred EEEEeCccccchhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcc
Q psy1618 52 LALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFI 95 (178)
Q Consensus 52 l~lIKPdav~~~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~ 95 (178)
+++++|.-+....+|.+.|++....|++. -.|+.+.++++..
T Consensus 1 I~v~~p~~~~D~~~i~~~l~~g~~Vivnl--~~l~~~~~~Ri~D 42 (73)
T PF04472_consen 1 IVVFEPKSFEDAREIVDALREGKIVIVNL--ENLDDEEAQRILD 42 (73)
T ss_dssp -EEEE-SSGGGHHHHHHHHHTT--EEEE---TTS-HHHHHHHHH
T ss_pred CEEEeeCCHHHHHHHHHHHHcCCEEEEEC--CCCCHHHHHHHHH
Confidence 36889999998999999999876666555 5667888888765
No 26
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=28.78 E-value=16 Score=27.64 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=37.7
Q ss_pred ccccceecC-CCcccccccccccceEEEEEEeCcccc----chhHHHHHHHHcCCeEEEEEe
Q psy1618 26 EAESVKLDG-DEVPAPIVQNLHCYEYTLALVKPHAFR----HVEDIEQTIQEKGFTIVKKKT 82 (178)
Q Consensus 26 ~~~~~~~~~-D~~~~~~~~~~~~~E~Tl~lIKPdav~----~~g~II~~i~~~Gf~Iv~~k~ 82 (178)
...-+++|+ .+.-.|.+|+......-.-+.+|++.- ..+.|-+.|.++||.|....-
T Consensus 50 ~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a~~Vr~~L~~aGF~v~~~~g 111 (124)
T PF05430_consen 50 RFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSAGAVRRALQQAGFEVEKVPG 111 (124)
T ss_dssp -EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--BHHHHHHHHHCTEEEEEEE-
T ss_pred cCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeechHHHHHHHHHcCCEEEEcCC
Confidence 445677884 566667788875445455566777664 258999999999999987653
No 27
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.56 E-value=89 Score=26.42 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=31.4
Q ss_pred EEEEEEeCccccchhHHHHHHHHcCCeEEEEEeeecCH
Q psy1618 50 YTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTP 87 (178)
Q Consensus 50 ~Tl~lIKPdav~~~g~II~~i~~~Gf~Iv~~k~~~ls~ 87 (178)
+.+.++.|....--...++-|..+||.|+..+-+-++.
T Consensus 119 ~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~d 156 (238)
T COG3473 119 QRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITD 156 (238)
T ss_pred ceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcc
Confidence 67889999887666888999999999999988765543
No 28
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=25.68 E-value=1.8e+02 Score=19.36 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=26.6
Q ss_pred EEEEEeCccccchhHHHHHHHHcCCeEEEEEeee
Q psy1618 51 TLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFK 84 (178)
Q Consensus 51 Tl~lIKPdav~~~g~II~~i~~~Gf~Iv~~k~~~ 84 (178)
++.+.-||-...+.+|++.+.++|..|..+....
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p 36 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRP 36 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEE
Confidence 5666667765567899999999999999986543
No 29
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.14 E-value=1.5e+02 Score=18.19 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=23.8
Q ss_pred EEEEEeCccccchhHHHHHHHHcCCeEEEEEe
Q psy1618 51 TLALVKPHAFRHVEDIEQTIQEKGFTIVKKKT 82 (178)
Q Consensus 51 Tl~lIKPdav~~~g~II~~i~~~Gf~Iv~~k~ 82 (178)
|+.+.-+|-..-+++|.+.|.++|..|..+..
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~ 32 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRV 32 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEE
Confidence 34555566544568999999999999987764
No 30
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.71 E-value=1.3e+02 Score=20.52 Aligned_cols=39 Identities=10% Similarity=0.261 Sum_probs=26.7
Q ss_pred EEEEEEeCcc-ccchhHHHHHHHHcCCeEEEEEeeecCHHHHHHh
Q psy1618 50 YTLALVKPHA-FRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEF 93 (178)
Q Consensus 50 ~Tl~lIKPda-v~~~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~ 93 (178)
..++.|.=.. ..+...+++.|.++|+.+.. ++..++..+
T Consensus 41 ~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~-----~~~~~~~~~ 80 (85)
T cd04906 41 HIFVGVSVANGAEELAELLEDLKSAGYEVVD-----LSDDELAKT 80 (85)
T ss_pred EEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE-----CCCCHHHHH
Confidence 4455566444 66789999999999998764 455554433
No 31
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=21.19 E-value=1.2e+02 Score=20.76 Aligned_cols=20 Identities=20% Similarity=0.647 Sum_probs=17.8
Q ss_pred hhHHHHHHHHcCCeEEEEEe
Q psy1618 63 VEDIEQTIQEKGFTIVKKKT 82 (178)
Q Consensus 63 ~g~II~~i~~~Gf~Iv~~k~ 82 (178)
..++|..|+..||..+++|=
T Consensus 9 ~ke~ik~Le~~Gf~~vrqkG 28 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQKG 28 (66)
T ss_pred HHHHHHHHHhCCcEEEEeec
Confidence 47899999999999998875
Done!