Query psy1618
Match_columns 178
No_of_seqs 117 out of 1056
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 22:48:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztp_A Nucleoside diphosphate 100.0 2.2E-46 7.4E-51 290.6 7.6 130 47-178 2-134 (142)
2 4hr2_A Nucleoside diphosphate 100.0 3E-46 1E-50 290.6 7.8 128 46-178 5-135 (145)
3 3evo_A NDP kinase, NDK, nucleo 100.0 4.7E-45 1.6E-49 284.2 8.1 127 47-178 5-135 (146)
4 3mpd_A Nucleoside diphosphate 100.0 4.7E-45 1.6E-49 285.7 7.5 127 47-178 4-133 (151)
5 1k44_A Nucleoside diphosphate 100.0 8.3E-45 2.8E-49 279.9 8.3 126 48-178 2-131 (136)
6 3fkb_A NDP kinase, NDK, nucleo 100.0 7.4E-45 2.5E-49 285.6 7.7 128 46-178 6-136 (155)
7 3q8u_A Nucleoside diphosphate 100.0 7.5E-45 2.6E-49 286.0 7.5 126 48-178 1-129 (157)
8 4fkx_A NDK B, nucleoside dipho 100.0 8.5E-45 2.9E-49 286.6 7.8 127 47-178 10-139 (161)
9 1wkj_A Nucleoside diphosphate 100.0 8.5E-45 2.9E-49 280.1 7.5 126 48-178 1-129 (137)
10 1nhk_R Nucleoside diphosphate 100.0 1.3E-44 4.5E-49 281.2 8.1 126 48-178 2-130 (144)
11 2hur_A NDK, nucleoside diphosp 100.0 1.3E-44 4.3E-49 280.7 7.9 126 48-178 2-130 (142)
12 3r9l_A Nucleoside diphosphate 100.0 9E-45 3.1E-49 285.1 6.6 127 47-178 6-135 (155)
13 3l7u_A Nucleoside diphosphate 100.0 2.1E-44 7.1E-49 287.0 7.3 127 47-178 23-152 (172)
14 2vu5_A Nucleoside diphosphate 100.0 2.8E-44 9.7E-49 280.4 7.0 126 48-178 1-129 (148)
15 1xiq_A Nucleoside diphosphate 100.0 4.7E-44 1.6E-48 281.5 8.3 127 47-178 8-137 (157)
16 1pku_A Nucleoside diphosphate 100.0 4.5E-44 1.5E-48 279.9 7.5 126 48-178 2-130 (150)
17 1s57_A Nucleoside diphosphate 100.0 6.3E-44 2.1E-48 279.9 8.0 127 47-178 4-133 (153)
18 1u8w_A Nucleoside diphosphate 100.0 5E-44 1.7E-48 279.3 7.3 126 48-178 1-129 (149)
19 1ehw_A NDPK H4, nucleoside dip 100.0 8.8E-44 3E-48 281.2 8.2 128 46-178 22-152 (162)
20 3bbb_A Nucleoside diphosphate 100.0 7.9E-44 2.7E-48 278.7 7.8 127 47-178 2-131 (151)
21 1w7w_A Nucleoside diphosphate 100.0 7.7E-44 2.6E-48 286.1 7.5 140 34-178 18-160 (182)
22 1nb2_A Nucleoside diphosphate 100.0 3.9E-44 1.3E-48 280.2 5.1 126 48-178 2-130 (150)
23 3b54_A NDK, NDP kinase, nucleo 100.0 7.7E-44 2.6E-48 281.3 6.7 128 46-178 11-141 (161)
24 3js9_A Nucleoside diphosphate 100.0 1.4E-43 4.7E-48 278.6 7.6 127 47-178 8-137 (156)
25 2dxe_A Nucleoside diphosphate 100.0 2.2E-43 7.7E-48 278.5 8.0 126 48-178 7-138 (160)
26 1zs6_A Nucleoside diphosphate 100.0 2.9E-43 1E-47 279.9 7.6 128 46-178 19-149 (169)
27 2az3_A Nucleoside diphosphate 100.0 1.9E-42 6.3E-47 274.2 8.4 127 47-178 7-138 (164)
28 4dz6_A Nucleoside diphosphate 100.0 1.2E-42 4.2E-47 280.6 5.8 129 47-178 25-169 (190)
29 1xqi_A Nucleoside diphosphate 100.0 2.4E-40 8.3E-45 268.4 3.9 129 47-178 14-186 (195)
30 3bh7_B Protein XRP2; protein-p 100.0 9.6E-29 3.3E-33 215.8 9.3 106 46-178 233-341 (352)
31 3p04_A Uncharacterized BCR; SE 71.7 3.5 0.00012 28.6 3.3 45 49-95 4-48 (87)
32 3bbn_F Ribosomal protein S6; s 43.5 25 0.00087 27.1 4.1 72 11-82 27-103 (168)
33 3vyw_A MNMC2; tRNA wobble urid 24.5 16 0.00055 30.8 0.0 56 28-83 188-248 (308)
No 1
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=2.2e-46 Score=290.63 Aligned_cols=130 Identities=35% Similarity=0.557 Sum_probs=126.4
Q ss_pred cceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEee
Q psy1618 47 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 124 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g 124 (178)
.+|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||. +|++++||++|++||+||||++|+|.|
T Consensus 2 ~~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~--~~~~kpff~~Lv~~mtSGPvva~vl~g 79 (142)
T 3ztp_A 2 AVERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYY--VHRERPFFQELVEFMSSGPVVAAVLEG 79 (142)
T ss_dssp CEEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEE
T ss_pred ccceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHH--HhcCCchHHHHHHHhcCCCEEEEEEeC
Confidence 3699999999999986 699999999999999999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 125 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 125 ~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
+|||+.||+++|||||..|+...|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 80 ~naV~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~ 134 (142)
T 3ztp_A 80 EDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPESAQYEICF 134 (142)
T ss_dssp ETHHHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCSHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999863
No 2
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=3e-46 Score=290.57 Aligned_cols=128 Identities=27% Similarity=0.387 Sum_probs=124.1
Q ss_pred ccceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEe
Q psy1618 46 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 123 (178)
Q Consensus 46 ~~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~ 123 (178)
+.+|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||. +|++++||++|++||+||||+||+|.
T Consensus 5 m~~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvva~vle 82 (145)
T 4hr2_A 5 MALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYA--VHAERPFFKDLVEFMISGPVMIQVLE 82 (145)
T ss_dssp CCEEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred chHHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHH--HHhcCchHHHHHHHhcCCCEEEEEEE
Confidence 45799999999999987 699999999999999999999999999999999 99999999999999999999999999
Q ss_pred ecchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 124 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 124 g~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|+|||+.||+++|||||..| .|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 83 g~~aV~~~R~l~G~tdp~~A---~pgtIR~~fg~~~~~N~vHgSDs~e~A~rEi~~ 135 (145)
T 4hr2_A 83 GEDAILKNRDLMGATDPKKA---EKGTIRADFADSIDANAVHGSDAPETARVEIAF 135 (145)
T ss_dssp EETHHHHHHHHHCCSSTTTS---CTTSHHHHHCSBTTBCSEEECCSHHHHHHHHHH
T ss_pred cCCcHhHHhhccCCCCcccC---CCCCcHHHhcCCcCccceECCCCHHHHHHHHHH
Confidence 99999999999999999999 799999999999999999999999 99999863
No 3
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=4.7e-45 Score=284.25 Aligned_cols=127 Identities=24% Similarity=0.321 Sum_probs=123.0
Q ss_pred cceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeec-CHHHHHHhcccccccCCCcccccceeeecCcEEEEEEe
Q psy1618 47 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKF-TPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 123 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~l-s~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~ 123 (178)
.+|+||+|||||++.+ +|+||++|+++||.|+++||++| |+++|++||. +|++++||+.|++||+||||++|+|.
T Consensus 5 ~~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vle 82 (146)
T 3evo_A 5 GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYK--EHSEQSYFNDNCDFMVSGPIISIVYE 82 (146)
T ss_dssp -CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred cceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHH--HHcCCccHHHHHHHHhcCCeEEEEEe
Confidence 3799999999999986 69999999999999999999999 9999999999 99999999999999999999999999
Q ss_pred ecchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 124 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 124 g~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|+|||+.||+++|||||..| .|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 83 g~naV~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~ 135 (146)
T 3evo_A 83 GTDAISKIRRLQGNTNPLAS---APGTIRGDLANDIRENLIHASDSEDSAVDEISI 135 (146)
T ss_dssp ETTHHHHHHHHHCCSSTTTC---CTTSHHHHHCCSSSCCSEEECCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCCcccC---CCCChHHHhCCCccceeEEeCCCHHHHHHHHHH
Confidence 99999999999999999999 999999999999999999999999 99999863
No 4
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=4.7e-45 Score=285.66 Aligned_cols=127 Identities=25% Similarity=0.296 Sum_probs=122.9
Q ss_pred cceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEee
Q psy1618 47 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 124 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g 124 (178)
.+|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||. +|++++||++|++||+||||++|+|.|
T Consensus 4 ~~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg 81 (151)
T 3mpd_A 4 SMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYS--HLSSMPFFSEMVEDMMSGMVLAMVWVG 81 (151)
T ss_dssp -CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred ceEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHH--HHcCCccHHHHHHHhcCCCEEEEEEeC
Confidence 4799999999999986 699999999999999999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 125 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 125 ~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
+|||+.||+++|||||..| .|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 82 ~naV~~~R~l~G~t~p~~a---~PgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~ 133 (151)
T 3mpd_A 82 KDAVSIGRKLIGETNPQAA---SVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKL 133 (151)
T ss_dssp TTHHHHHHHHHCCSSTTTS---CTTSHHHHHCCSSTTCSEEECSSHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCChhhc---CCCChhHHhCCCccceeEEeCCCHHHHHHHHHH
Confidence 9999999999999999988 899999999999999999999999 99999864
No 5
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=8.3e-45 Score=279.89 Aligned_cols=126 Identities=26% Similarity=0.380 Sum_probs=122.8
Q ss_pred ceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
+|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||. +|++++||+.|++||+|||+++|+|.|+
T Consensus 2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vl~g~ 79 (136)
T 1k44_A 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYA--EHEGKPFFGSLLEFITSGPVVAAIVEGT 79 (136)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHTTTSCEEEEEEEET
T ss_pred ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhccCCEEEEEEeCC
Confidence 589999999999987 799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChh-hhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPD-KAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~-~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||+.||+++||++|. .| .|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 80 ~aV~~~R~l~G~t~p~~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~ 131 (136)
T 1k44_A 80 RAIAAVRQLAGGTDPVQAA---APGTIRGDFALETQFNLVHGSDSAESAQREIAL 131 (136)
T ss_dssp THHHHHHHHHCCSSTTTTS---CTTSHHHHHCCCSTTCCEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCccccC---CCCCcHHHhcCCccceEEEeCCCHHHHHHHHHH
Confidence 9999999999999999 88 899999999999999999999999 99999963
No 6
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=7.4e-45 Score=285.59 Aligned_cols=128 Identities=26% Similarity=0.334 Sum_probs=123.9
Q ss_pred ccceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEe
Q psy1618 46 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 123 (178)
Q Consensus 46 ~~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~ 123 (178)
...|+||+|||||++.+ +|+||++|+++||.|+++||++|++++|++||. +|++++||++|++||+||||++|+|.
T Consensus 6 ~~~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvle 83 (155)
T 3fkb_A 6 VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYA--EHKERPFFGGLVSFITSGPVVAMVFE 83 (155)
T ss_dssp CTTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred cccceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HhcCCchHHHHHHHhcCCCEEEEEEe
Confidence 45799999999999986 699999999999999999999999999999999 99999999999999999999999999
Q ss_pred ecchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 124 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 124 g~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|+|||+.||+++||+||..| .|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 84 g~naV~~~R~l~G~t~p~~a---~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~ 136 (155)
T 3fkb_A 84 GKGVVASARLMIGVTNPLAS---APGSIRGDFGVDVGRNIIGGSDSVESANREIAL 136 (155)
T ss_dssp STTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCChhhc---CCCChhHHhCCCccceeEEeCCCHHHHHHHHHH
Confidence 99999999999999999988 899999999999999999999999 99999864
No 7
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=7.5e-45 Score=286.04 Aligned_cols=126 Identities=25% Similarity=0.389 Sum_probs=122.6
Q ss_pred ceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
+|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||. ++++++||+.|++||+||||++|+|.|+
T Consensus 1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg~ 78 (157)
T 3q8u_A 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYG--EHQGKPFYNDLISFITSAPVFAMVVEGE 78 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHCCCccHHHHHHHhcCCCEEEEEEeCC
Confidence 489999999999986 699999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||+.||+++|||||..| .|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 79 naV~~~R~l~GpTdp~~A---~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~ 129 (157)
T 3q8u_A 79 DAVNVSRHIIGSTNPSEA---SPGSIRGDLGLTVGRNIIHGSDSLESAEREINL 129 (157)
T ss_dssp THHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCChhhc---CCCChHHHhCCCCCCeeEEeCCCHHHHHHHHHH
Confidence 999999999999999999 899999999999999999999999 99999863
No 8
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=8.5e-45 Score=286.62 Aligned_cols=127 Identities=25% Similarity=0.366 Sum_probs=123.3
Q ss_pred cceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEee
Q psy1618 47 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 124 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g 124 (178)
..|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||. ++++++||++|++||+||||+||+|.|
T Consensus 10 ~~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvleg 87 (161)
T 4fkx_A 10 PSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYI--DLASKPFYSGLVSYFSSGPIVGMVWEG 87 (161)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred CcccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCccHHHHHHHHhCCCcEEEEEec
Confidence 4689999999999986 699999999999999999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 125 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 125 ~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
+|||+.||+++|||||..| .|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 88 ~naV~~~R~l~GpTdp~~A---~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~ 139 (161)
T 4fkx_A 88 LGVVKGGRVLLGATNPADS---LPGTIRGDFAVDVGRNVCHGSDSVESAKREIAF 139 (161)
T ss_dssp TTHHHHHHHHHCCSSGGGC---CTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHH
T ss_pred cChHHHHHHHhcCCChhhc---CCCChhHhhCCCccceeEEeCCCHHHHHHHHHH
Confidence 9999999999999999988 899999999999999999999999 99999964
No 9
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=8.5e-45 Score=280.12 Aligned_cols=126 Identities=29% Similarity=0.448 Sum_probs=122.6
Q ss_pred ceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
+|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||. +|++++||+.|++||+|||+++|+|.|+
T Consensus 1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtsGPvva~vl~g~ 78 (137)
T 1wkj_A 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYA--EHREKPFFPGLVRFITSGPVVAMVLEGP 78 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGSSSSSHHHHHHHHTSSCEEEEEEEST
T ss_pred CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhcCCCEEEEEEeCC
Confidence 489999999999987 799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||+.||+++||++|..| +|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 79 ~aV~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~ 129 (137)
T 1wkj_A 79 GVVAEVRKMMGATHPKDA---LPGTIRGDFATTIDENVIHGSATLEDAQREIAL 129 (137)
T ss_dssp THHHHHHHHHCCSSTTTC---CTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCCCCcC---CCCcchHHhCCCcccceEEecCCHHHHHHHHHH
Confidence 999999999999999999 899999999999999999999999 99999863
No 10
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=1.3e-44 Score=281.16 Aligned_cols=126 Identities=25% Similarity=0.372 Sum_probs=122.9
Q ss_pred ceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
+|+||+|||||++.+ +|+||++|+++||.|+++||++|++++|++||. +|++++||+.|++||+|||+++|+|.|+
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vl~g~ 79 (144)
T 1nhk_R 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYA--VHKARPFFKDLVQFMISGPVVLMVLEGE 79 (144)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhccCCEEEEEEecc
Confidence 589999999999987 799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||+.||+++|||+|..| .|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 80 ~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~ 130 (144)
T 1nhk_R 80 NAVLANRDIMGATNPAQA---AEGTIRKDFATSIDKNTVHGSDSLENAKIEIAY 130 (144)
T ss_dssp THHHHHHHHHCCSSGGGC---CTTSHHHHHCCSSSSCSEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCCCcC---CCCcchHHhCCCCcceeEEeCCCHHHHHHHHHH
Confidence 999999999999999999 899999999999999999999999 99999863
No 11
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=1.3e-44 Score=280.68 Aligned_cols=126 Identities=31% Similarity=0.473 Sum_probs=122.9
Q ss_pred ceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
+|+||+|||||++.+ +|+||++|+++||.|+++||++|++++|++||. +|++++||+.|++||+|||+++|+|.|+
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vl~g~ 79 (142)
T 2hur_A 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYA--EHDGKPFFDGLVEFMTSGPIVVSVLEGE 79 (142)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HhcCCCchHHHHHHhcCCCEEEEEEecc
Confidence 589999999999987 799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||+.||+++||++|..| .|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 80 ~aV~~~R~l~G~t~p~~A---~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~ 130 (142)
T 2hur_A 80 NAVQRHRDLLGATNPANA---LAGTLRADYADSLTENGTHGSDSVESAAREIAY 130 (142)
T ss_dssp THHHHHHHHHCCSSTTTS---CTTSHHHHHCSSSTTCSEEECSSHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCCcccC---CCCcchHHhCCCcccceEEeCCCHHHHHHHHHH
Confidence 999999999999999998 899999999999999999999999 99999863
No 12
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=9e-45 Score=285.09 Aligned_cols=127 Identities=24% Similarity=0.347 Sum_probs=96.5
Q ss_pred cceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEee
Q psy1618 47 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 124 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g 124 (178)
.+|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||. +|++++||+.|++||+||||++|+|.|
T Consensus 6 ~~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg 83 (155)
T 3r9l_A 6 ARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYK--EHAARPFFAGLCKFLSSGPVCAMVWEG 83 (155)
T ss_dssp CSCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC-----------------------------CCSCCEEEEEES
T ss_pred chheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HhcCCccHHHHHHHhcCCCEEEEEEeC
Confidence 4799999999999986 799999999999999999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 125 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 125 ~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
+|||+.||+++|||||..| .|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 84 ~naV~~~R~l~G~t~p~~a---~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~ 135 (155)
T 3r9l_A 84 ANVVSISRTMMGVTKPAES---APGTIRGDFGIDVGRNIIHGSANLDDAAREIAL 135 (155)
T ss_dssp TTHHHHHHHHHCCSCTTTC---CTTSHHHHHCCSSTTCCEEECSSHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCCChhhc---CCCChhHHhCCCccceeEEeCCCHHHHHHHHHH
Confidence 9999999999999999988 899999999999999999999999 99999863
No 13
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-44 Score=286.99 Aligned_cols=127 Identities=24% Similarity=0.364 Sum_probs=123.4
Q ss_pred cceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEee
Q psy1618 47 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 124 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g 124 (178)
.+|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||. ++++++||++|++||+||||+||+|.|
T Consensus 23 ~~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg 100 (172)
T 3l7u_A 23 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYV--DLKDRPFFAGLVKYMHSGPVVAMVWEG 100 (172)
T ss_dssp GGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHHSSCEEEEEEES
T ss_pred hhceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHH--HhcCCchHHHHHHHHhcCCeEEEEEeC
Confidence 4899999999999986 699999999999999999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 125 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 125 ~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
+|||+.||+++|||||..| .|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 101 ~naV~~~R~l~GpTdp~~A---~PgTIR~~fg~~~~~N~VHgSDs~esA~rEI~~ 152 (172)
T 3l7u_A 101 LNVVKTGRVMLGETNPADS---KPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGL 152 (172)
T ss_dssp TTHHHHHHHHHCCSSTTTC---CTTSHHHHHCCCGGGCCEEECSSHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCChhhc---CCCChhHHhcCCCCCcEEEeCCCHHHHHHHHHH
Confidence 9999999999999999998 899999999999999999999999 99999863
No 14
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=2.8e-44 Score=280.44 Aligned_cols=126 Identities=28% Similarity=0.445 Sum_probs=122.4
Q ss_pred ceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
+|+||+|||||++.+ +|+||++|+++||.|+++||++|++++|++||. +|++++||+.|++||+|||+++|+|.|+
T Consensus 1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vleg~ 78 (148)
T 2vu5_A 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYA--EHEEKPFFGELVDFITSGPVFAMVWQGE 78 (148)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGG--GTTTCTHHHHHHHHHTTCCEEEEEEEST
T ss_pred CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhcCCCEEEEEEecc
Confidence 489999999999987 799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||+.||+++||++|..| +|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 79 ~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~ 129 (148)
T 2vu5_A 79 GVVDTARNMMGKTRPHEA---APGTIRGDFGVTVAKNIIHGSDSLESAEREIGI 129 (148)
T ss_dssp THHHHHHHHHCCSSTTTS---CTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHH
T ss_pred ChHHHHHHHhCCCCcccc---CCCChHHHhcCCcccceEEeCCCHHHHHHHHHH
Confidence 999999999999999998 899999999999999999999999 99999863
No 15
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=4.7e-44 Score=281.52 Aligned_cols=127 Identities=22% Similarity=0.339 Sum_probs=123.2
Q ss_pred cceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEee
Q psy1618 47 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 124 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g 124 (178)
.+|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||. ++++++||++|++||+||||++|+|.|
T Consensus 8 ~~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvleg 85 (157)
T 1xiq_A 8 HMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYK--ELSDQPFFKNLVAYISKGPVVAMVWEG 85 (157)
T ss_dssp -CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGSSSSSCTTHHHHHTTSCEEEEEEES
T ss_pred hhheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHHcCCCEEEEEEec
Confidence 5899999999999997 699999999999999999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 125 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 125 ~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
+|||+.||+++|||||..| .|+|||+.||.+..+|+|||||++ +|+|||++
T Consensus 86 ~naV~~~R~l~G~T~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~ 137 (157)
T 1xiq_A 86 VDMVKQGRKLIGETNPLTS---NTGTIRGDFCLEVSKNVIHGSDSVASANKEINI 137 (157)
T ss_dssp TTHHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHH
T ss_pred ccchHHHHHHcCCCCCCcC---CCCChHHHhCCCCCceeEEeCCCHHHHHHHHHH
Confidence 9999999999999999999 899999999999999999999999 99999863
No 16
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=4.5e-44 Score=279.86 Aligned_cols=126 Identities=26% Similarity=0.384 Sum_probs=122.8
Q ss_pred ceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
+|+||+|||||++.+ +|+||++|+++||.|+++||++|++++|++||. +|++++||+.|++||+|||+++|+|.|+
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vleg~ 79 (150)
T 1pku_A 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYA--DLSDKPFFPGLVEYIISGPVVAMVWEGK 79 (150)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSG--GGTTSTTHHHHHHHHHSSCEEEEEEEST
T ss_pred ceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HhcCCCccHHHHHHhcCCCEEEEEEecc
Confidence 589999999999987 699999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||+.||+++||++|..| .|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 80 ~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~ 130 (150)
T 1pku_A 80 DVVATGRRIIGATRPWEA---APGTIRADYAVEVGRNVIHGSDSVDNGKKEIAL 130 (150)
T ss_dssp THHHHHHHHHCCSSGGGS---CTTSHHHHHCSBTTBCSEEECSSHHHHHHHHHH
T ss_pred chHHHHHHHhCCCCcccC---CCCChHHHhCCCccceeEEeCCCHHHHHHHHHH
Confidence 999999999999999999 899999999999999999999999 99999863
No 17
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=6.3e-44 Score=279.85 Aligned_cols=127 Identities=27% Similarity=0.357 Sum_probs=123.5
Q ss_pred cceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEee
Q psy1618 47 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 124 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g 124 (178)
..|+||+|||||++.+ +|+||++|+++||.|+++||++|++++|++||. +|++++||++|++||+||||++|+|.|
T Consensus 4 ~~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvleg 81 (153)
T 1s57_A 4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYK--DLSAKSFFPNLIEYITSGPVVCMAWEG 81 (153)
T ss_dssp CCEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSSSHHHHHHHHTSSCEEEEEEEE
T ss_pred ccceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHH--HhcCCCcchhHHHHhcCCCEEEEEEec
Confidence 4699999999999987 799999999999999999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 125 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 125 ~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
+|||+.||+++||+||..| .|+|||+.||.+..+|+|||||++ +|+|||++
T Consensus 82 ~~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~ 133 (153)
T 1s57_A 82 VGVVASARKLIGKTDPLQA---EPGTIRGDLAVQTGRNIVHGSDSPENGKREIGL 133 (153)
T ss_dssp TTHHHHHHHHHCCSSTTTS---CTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCCcccc---CCcchHHHhcCCCcCceEEcCCCHHHHHHHHHH
Confidence 9999999999999999999 799999999999999999999999 99999863
No 18
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=5e-44 Score=279.30 Aligned_cols=126 Identities=21% Similarity=0.347 Sum_probs=122.6
Q ss_pred ceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
+|+||+|||||++.+ +|+||++|+++||.|+++||++|++++|++||. +|++++||++|++||+||||++|+|.|+
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~--~~~~kpff~~Lv~~mtSGPvva~vleg~ 78 (149)
T 1u8w_A 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYE--DLSSKSFFSGLVDYIVSGPVVAMIWEGK 78 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTC--TTSSSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCcchhHHhHhcCCCEEEEEEecC
Confidence 489999999999997 699999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||+.||+++||++|..| +|+|||+.||.+..+|+|||||++ +|+|||.+
T Consensus 79 ~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~ 129 (149)
T 1u8w_A 79 NVVLTGRKIIGATNPAAS---EPGTIRGDFAIDIGRNVIHGSDSVESARKEIAL 129 (149)
T ss_dssp THHHHHHHHHCCSSTTTC---CTTSHHHHHCCSTTSCSEEECSSHHHHHHHHHH
T ss_pred CchHHHHHHhCCCCcccC---CCCCcHHHHCCCCcCceEEecCCHHHHHHHHHH
Confidence 999999999999999999 899999999999999999999999 99999863
No 19
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=8.8e-44 Score=281.20 Aligned_cols=128 Identities=30% Similarity=0.400 Sum_probs=123.8
Q ss_pred ccceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEe
Q psy1618 46 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 123 (178)
Q Consensus 46 ~~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~ 123 (178)
+..|+||+|||||++.+ +|+||++|+++||.|+++||++|++++|++||. ++++++||+.|++||+||||++|+|.
T Consensus 22 ~~~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvle 99 (162)
T 1ehw_A 22 GTRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQ--DLRRKPFYPALIRYMSSGPVVAMVWE 99 (162)
T ss_dssp GGGCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred chhceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCcchHHHHHHHcCCCEEEEEEe
Confidence 34799999999999987 699999999999999999999999999999999 99999999999999999999999999
Q ss_pred ecchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 124 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 124 g~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|+|||+.||+++|||+|..| +|+|||++||.+..+|+|||||++ +|+|||.+
T Consensus 100 g~naV~~~R~l~G~T~p~~A---~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~ 152 (162)
T 1ehw_A 100 GYNVVRASRAMIGHTDSAEA---APGTIRGDFSVHISRNVIHASDSVEGAQREIQL 152 (162)
T ss_dssp STTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCCSSCCSEEECSSHHHHHHHHHH
T ss_pred chhHHHHHHHHhCCCCCCCC---CCCChHHHhCCCCCCeEEEECCCHHHHHHHHHH
Confidence 99999999999999999998 899999999999999999999999 99999863
No 20
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=7.9e-44 Score=278.73 Aligned_cols=127 Identities=26% Similarity=0.406 Sum_probs=123.1
Q ss_pred cceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEee
Q psy1618 47 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 124 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g 124 (178)
.+|+||+|||||++.+ +|+||++|+++||.|+++||+++++++|++||. +|++++||+.|++||+||||++|+|.|
T Consensus 2 ~~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg 79 (151)
T 3bbb_A 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYI--DLKDRPFFPGLVKYMNSGPVVAMVWEG 79 (151)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred CcceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HhcCCCchHHHHHHHccCCEEEEEEec
Confidence 3689999999999987 699999999999999999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 125 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 125 ~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
+|||+.||+++|||||..| .|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 80 ~~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~ 131 (151)
T 3bbb_A 80 LNVVKTGRVMLGETNPADS---KPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISL 131 (151)
T ss_dssp TTHHHHHHHHHCCSSGGGC---CTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCcccC---CCCCcHHHhcCCcccceEEecCCHHHHHHHHHH
Confidence 9999999999999999998 699999999999999999999999 99999863
No 21
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=7.7e-44 Score=286.13 Aligned_cols=140 Identities=23% Similarity=0.247 Sum_probs=124.2
Q ss_pred CCCcccccccccccceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCccccccee
Q psy1618 34 GDEVPAPIVQNLHCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCY 111 (178)
Q Consensus 34 ~D~~~~~~~~~~~~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~ 111 (178)
.|-||.+.-.....+|+||+|||||++.+ +|+||++|+++||.|+++||++|++++|++||. ++++++||+.|++|
T Consensus 18 ~~~~f~~~~~~~~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~--~h~~kpff~~Lv~~ 95 (182)
T 1w7w_A 18 ENLYFQGAMDPEAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYH--DLKERPFFNGLCDF 95 (182)
T ss_dssp ------------CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHH
T ss_pred hhhhcCCCccccchhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCcchHHHHHH
Confidence 44555443233345899999999999987 699999999999999999999999999999999 99999999999999
Q ss_pred eecCcEEEEEEeecchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 112 MVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 112 mtsGpvval~L~g~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|+||||++|+|.|+|||+.||+++|||+|..| +|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 96 mtSGPvvamvleG~naV~~~R~l~G~T~p~~A---~PgTIR~~fg~~~~~N~vHgSDs~esA~rEi~~ 160 (182)
T 1w7w_A 96 LSSGPVIAMVWEGEGVITYGRKLIGATDPQKS---APGTIRGDLAVVVGRNIIHGSDGPETAKDEIKL 160 (182)
T ss_dssp HTSSCEEEEEEESTTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHH
T ss_pred HcCCCEEEEEEecccHHHHHHHHhCCCCCCCC---CCCChHHHhCCCccceeEEeCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999 899999999999999999999999 99999963
No 22
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=3.9e-44 Score=280.21 Aligned_cols=126 Identities=25% Similarity=0.313 Sum_probs=122.6
Q ss_pred ceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
+|+||+|||||++.+ +|+||++|+++||.|+++||++|++++|++||. +|++++||+.|++||+|||+++|+|.|+
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~--~h~~kpff~~Lv~~mtSGPvva~vl~g~ 79 (150)
T 1nb2_A 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYA--ELGGGPFFGGLVGGATSGPVFAMVWEGL 79 (150)
T ss_dssp CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTC--TTSSSTTHHHHHHHHTSSCCBEEEEEST
T ss_pred ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhcCCCEEEEEEecC
Confidence 589999999999987 799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|||+.||+++||++|..| .|+|||++||.+..+|+|||||++ +|+|||++
T Consensus 80 naV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~ 130 (150)
T 1nb2_A 80 NAAATARQILGATNPSDA---APGTIRGDFGVSAGRNAIHGSDSAGSAAKEIGA 130 (150)
T ss_dssp THHHHHHHHHCCSSTTSS---CTTSHHHHSCSCSSSCSEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCcccC---CCCChHHHhcCCccceeEEeCCCHHHHHHHHHH
Confidence 999999999999999998 899999999999999999999999 99999863
No 23
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-44 Score=281.35 Aligned_cols=128 Identities=23% Similarity=0.371 Sum_probs=117.0
Q ss_pred ccceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEe
Q psy1618 46 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 123 (178)
Q Consensus 46 ~~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~ 123 (178)
+..|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||. ++++++||++|++||+||||++|+|.
T Consensus 11 ~~~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvle 88 (161)
T 3b54_A 11 SQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYA--EHVGKPFFPKMVSFMKSGPILATVWE 88 (161)
T ss_dssp CCCCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC---------CHHHHHHHHSSCEEEEEEE
T ss_pred cccceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCcchHHHHHHhcCCCEEEEEEe
Confidence 35899999999999987 799999999999999999999999999999999 99999999999999999999999999
Q ss_pred ecchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 124 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 124 g~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|+|||+.||+++|||+|..| +|+|||+.||.+..+|+|||||++ +|+|||++
T Consensus 89 g~naV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~ 141 (161)
T 3b54_A 89 GKDVVRQGRTILGATNPLGS---APGTIRGDFGIDLGRNVCHGSDSVDSAEREINL 141 (161)
T ss_dssp STTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHH
T ss_pred ccChHHHHHHHhCCCCcccC---CCCChHHHhcCCCCCceEEeCCCHHHHHHHHHH
Confidence 99999999999999999998 899999999999999999999999 99999863
No 24
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=1.4e-43 Score=278.57 Aligned_cols=127 Identities=23% Similarity=0.319 Sum_probs=123.0
Q ss_pred cceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEee
Q psy1618 47 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 124 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g 124 (178)
.+|+|++|||||++.+ +|+||++|+++||.|+++||++||+++|++||. ++++++||++|++||+||||++|+|.|
T Consensus 8 ~~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~--~h~~kpff~~Lv~fmtSGPvvamvleg 85 (156)
T 3js9_A 8 HMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYC--EHKDKPFFKDLCDFISHGPVFCMIWEG 85 (156)
T ss_dssp -CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHHHCCEEEEEEEE
T ss_pred chhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHH--HhcCCccHHHHHHHHhcCCCEEEEEec
Confidence 5899999999999986 799999999999999999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 125 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 125 ~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
+|||++||+++|||||..| .|+|||+.||.+..+|+|||||++ +|+|||++
T Consensus 86 ~naV~~~R~l~G~T~p~~A---~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~ 137 (156)
T 3js9_A 86 PEAIKIGRNLVGLTSPVES---AAGTIRGDFGVVKNFNIVHASSSAEDAARECAL 137 (156)
T ss_dssp TTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCcccc---CCCCHHHHhCCCCCceeEEcCCCHHHHHHHHHH
Confidence 9999999999999999998 899999999999999999999999 99999864
No 25
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=2.2e-43 Score=278.50 Aligned_cols=126 Identities=28% Similarity=0.400 Sum_probs=122.8
Q ss_pred ceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEeec
Q psy1618 48 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAKQ 125 (178)
Q Consensus 48 ~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g~ 125 (178)
.|+||+|||||++.+ +|+||++|+++||.|+++||+++|+++|++||. +|++++||+.|++||+||||++|+|.|+
T Consensus 7 ~erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~--~h~~kpff~~Lv~~mtSGPvvamvleg~ 84 (160)
T 2dxe_A 7 TERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYE--EHREKPFFKALIDYITKTPVVVMVLEGR 84 (160)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred CCeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhcCCCEEEEEEecc
Confidence 699999999999987 799999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chhHHHHhhcCCCChhhhhhcCCCChhhccccCCCc---eEEeeCCCc-ccccccCC
Q psy1618 126 KAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIM---NGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 126 nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~---NavH~Sd~~-~~~re~~l 178 (178)
|||+.||+++|||||..| +|+|||++||.+..+ |+|||||++ +|+|||++
T Consensus 85 ~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~~~~N~vHgSDs~esA~rEi~~ 138 (160)
T 2dxe_A 85 YAVEVVRKMAGATDPKDA---APGTIRGDFGLEVSDAICNVIHASDSKESAEREISL 138 (160)
T ss_dssp THHHHHHHHHCCSSGGGS---CTTSHHHHHCCCCSSSCCCSEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCCCcC---CCCChHHHhcCCcccCcCceEEcCCCHHHHHHHHHH
Confidence 999999999999999998 899999999999999 999999999 99999863
No 26
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=2.9e-43 Score=279.93 Aligned_cols=128 Identities=29% Similarity=0.383 Sum_probs=124.2
Q ss_pred ccceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEe
Q psy1618 46 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 123 (178)
Q Consensus 46 ~~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~ 123 (178)
..+|+||+|||||++.+ +|+||++|+++||.|+++||++|++++|++||. +|++++||++|++||+||||++|+|.
T Consensus 19 ~~~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvle 96 (169)
T 1zs6_A 19 GAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYA--ELRERPFYGRLVKYMASGPVVAMVWQ 96 (169)
T ss_dssp GGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred hhhccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCCchHHHHHHhcCCCEEEEEEe
Confidence 45899999999999987 699999999999999999999999999999999 99999999999999999999999999
Q ss_pred ecchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 124 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 124 g~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|+|||+.||+++||+||..| +|+|||++||.+..+|+|||||++ +|+|||.+
T Consensus 97 g~~aV~~~R~l~G~t~p~~A---~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~ 149 (169)
T 1zs6_A 97 GLDVVRTSRALIGATNPADA---PPGTIRGDFCIEVGKNLIHGSDSVESARREIAL 149 (169)
T ss_dssp STTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCSGGGCSEEECSSHHHHHHHHHH
T ss_pred cCCchHHHHHHhCCCCcccC---CCCChHHHHcCCCcCceEEecCCHHHHHHHHHH
Confidence 99999999999999999999 899999999999999999999999 99999863
No 27
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=1.9e-42 Score=274.16 Aligned_cols=127 Identities=30% Similarity=0.407 Sum_probs=122.6
Q ss_pred cceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEee
Q psy1618 47 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLAK 124 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~g 124 (178)
..|+||+|||||++.+ +|+||++|+++||.|+++||++|++++|++||. +|++++||++|++||+||||++|+|.|
T Consensus 7 ~~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~--~h~~kpff~~Lv~~mtSGPvvamvleg 84 (164)
T 2az3_A 7 HDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYA--EHEDKPFFDGLVSFITSGPVFAMVWEG 84 (164)
T ss_dssp CCCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTG--GGTTSTTHHHHHHHHTSSCEEEEEEES
T ss_pred ccceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHH--HHcCCcchHHHHHHHcCCCEEEEEEcc
Confidence 3799999999999997 799999999999999999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc---ccccccCC
Q psy1618 125 QKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL---TKQKEFTL 178 (178)
Q Consensus 125 ~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~---~~~re~~l 178 (178)
+|||+.||+++|||+|..| +|+|||+.||.+..+|+|||||++ +|+|||.+
T Consensus 85 ~~aV~~~R~l~G~t~p~~a---~pgtIR~~fg~~~~~N~vHgSDs~e~gsA~rEi~~ 138 (164)
T 2az3_A 85 ADATRQVRQLMGATDAQDA---APGTIRGDYGNDLGHNLIHGSDHEDEGANEREIAL 138 (164)
T ss_dssp TTHHHHHHHHHCCSSGGGS---CTTSHHHHHCCCSSSCSEEECCTTSTTHHHHHHHH
T ss_pred ccHHHHHHHHhCCCCcccc---CCCcchhhhcccccCceEEecCCcchhhHHHHHHH
Confidence 9999999999999999998 899999999999999999999999 69999863
No 28
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=1.2e-42 Score=280.64 Aligned_cols=129 Identities=19% Similarity=0.312 Sum_probs=123.6
Q ss_pred cceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccc---cccCCCcccccceeeecCcEEEEE
Q psy1618 47 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITR---EERDPVKVPRLVCYMVSGPVRVMV 121 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~---~~~~~~~~~~lv~~mtsGpvval~ 121 (178)
..|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||.++ ++++++||+.|++||+||||++|+
T Consensus 25 ~~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvvamv 104 (190)
T 4dz6_A 25 LLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTFV 104 (190)
T ss_dssp TEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEEEEE
T ss_pred hhhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCCCEEEEE
Confidence 4799999999999986 79999999999999999999999999999999854 788999999999999999999999
Q ss_pred EeecchhHHHHhhcCCCChhhhhhcCCCChhhccccCC----------CceEEeeCCCc-ccccccCC
Q psy1618 122 LAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVND----------IMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 122 L~g~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~----------~~NavH~Sd~~-~~~re~~l 178 (178)
|.|+|||+.||+++|||||..| .|+|||++||.+. .+|+|||||++ +|+|||.+
T Consensus 105 leG~naV~~~R~l~GpTdP~~A---~PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSDS~esA~rEI~~ 169 (190)
T 4dz6_A 105 VEGVESIEVVRKLCGATEPKLA---IPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADAMREIPI 169 (190)
T ss_dssp EEEETHHHHHHHHHCCSSGGGS---CTTSHHHHHCCCCHHHHHHHTCCCCCSEEECCSHHHHHHHHHH
T ss_pred EecCCHHHHHHHHcCCCChhhc---CCCChHHHhcCChhhhccccccccceeEEcCCCHHHHHHHHHH
Confidence 9999999999999999999999 8999999999999 99999999999 99999864
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=2.4e-40 Score=268.43 Aligned_cols=129 Identities=30% Similarity=0.438 Sum_probs=121.6
Q ss_pred cceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhccc-----------c----------------
Q psy1618 47 CYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFIT-----------R---------------- 97 (178)
Q Consensus 47 ~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~-----------~---------------- 97 (178)
..|+||+|||||++.+ +|+||++|.++||.|+++||+++++++|++||.+ .
T Consensus 14 ~~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 93 (195)
T 1xqi_A 14 PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIG 93 (195)
T ss_dssp CCCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHS
T ss_pred hhhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhc
Confidence 4799999999999987 6999999999999999999999999999999932 1
Q ss_pred ----cccCCCcccccceeeecCcEEEEEEeecchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCc----------eE
Q psy1618 98 ----EERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIM----------NG 163 (178)
Q Consensus 98 ----~~~~~~~~~~lv~~mtsGpvval~L~g~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~----------Na 163 (178)
.+.+++||+.|++||+||||++|++.|+|||+.||+++|||||..| .|+|||+.||.+..+ |+
T Consensus 94 ~~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A---~pgTIRg~fg~~~~~~~~~~~~~~~N~ 170 (195)
T 1xqi_A 94 TDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSA---PPGTIRGDYSIDSPDLAAEEGRVVFNL 170 (195)
T ss_dssp CCCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGS---CTTSHHHHHCCCCHHHHHHTTSCCCCS
T ss_pred cccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcC---CCCchhHhhcCchhhhccccccccceE
Confidence 4677899999999999999999999999999999999999999999 899999999999999 99
Q ss_pred EeeCCCc-ccccccCC
Q psy1618 164 SWVLQIL-TKQKEFTL 178 (178)
Q Consensus 164 vH~Sd~~-~~~re~~l 178 (178)
|||||++ +|+|||.+
T Consensus 171 vHgSDS~esA~rEi~~ 186 (195)
T 1xqi_A 171 VHASDSPSEAEREIRF 186 (195)
T ss_dssp EEECSSHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHH
Confidence 9999999 99999863
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.95 E-value=9.6e-29 Score=215.78 Aligned_cols=106 Identities=17% Similarity=0.239 Sum_probs=100.1
Q ss_pred ccceEEEEEEeCccccc--hhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcccccccCCCcccccceeeecCcEEEEEEe
Q psy1618 46 HCYEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA 123 (178)
Q Consensus 46 ~~~E~Tl~lIKPdav~~--~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~~~~~~~~~~~~~lv~~mtsGpvval~L~ 123 (178)
+..|+||+|||||++.+ +|+||++|+++||.|+++||++|++++|++||. +|+ ++|++||+|||+++|+|.
T Consensus 233 ~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~--~h~-----~~Lv~~mtsGPvva~vle 305 (352)
T 3bh7_B 233 SSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFR--EKA-----PDFLPLLNKGPVIALEFN 305 (352)
T ss_dssp SCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHG--GGG-----GGTGGGGGGSCEEEEEEE
T ss_pred ccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHH--HHH-----HHHHHHhccCCEEEEEEE
Confidence 45799999999999998 899999999999999999999999999999999 887 679999999999999999
Q ss_pred ecchhHHHHhhcCCCChhhhhhcCCCChhhccccCCCceEEeeCCCc-ccccccCC
Q psy1618 124 KQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL-TKQKEFTL 178 (178)
Q Consensus 124 g~nAV~~~r~l~Gp~dp~~A~~~~P~sLRa~yG~~~~~NavH~Sd~~-~~~re~~l 178 (178)
|+|||+.||+++|+++| .|+|||||++ +|+|||.+
T Consensus 306 G~~av~~~R~l~g~t~p--------------------gN~vHgSds~esA~~Ei~~ 341 (352)
T 3bh7_B 306 GDGAVEVCQLIVNEIFN--------------------GTKMFVSESKETASGDVDS 341 (352)
T ss_dssp STTHHHHHHHHHHHHCT--------------------TSCEEECSCHHHHHHHHHH
T ss_pred CcCHHHHHHHHhcCCCC--------------------CceEEecCCHHHHHHHHHH
Confidence 99999999999999985 2999999999 99999964
No 31
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=71.66 E-value=3.5 Score=28.62 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=38.9
Q ss_pred eEEEEEEeCccccchhHHHHHHHHcCCeEEEEEeeecCHHHHHHhcc
Q psy1618 49 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFI 95 (178)
Q Consensus 49 E~Tl~lIKPdav~~~g~II~~i~~~Gf~Iv~~k~~~ls~e~a~~~y~ 95 (178)
...+++++|..+....+|.+.|++..-.|++.. .|+.++|+++.-
T Consensus 4 ~~~Ivv~~P~sy~Da~~I~d~Lr~~~~VvvNL~--~ld~~~AqRivD 48 (87)
T 3p04_A 4 QSTIVPVELHSFEDAQVIGGAFRDGDAVVFDMS--LLSREEARRIVD 48 (87)
T ss_dssp CCSCEEEECSSGGGHHHHHHHHHTTCCEEEECT--TSCHHHHHHHHH
T ss_pred CcEEEEEecCcHHHHHHHHHHHHCCCEEEEECC--CCCHHHHHHHHH
Confidence 346899999999999999999999888888877 568999998865
No 32
>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=43.54 E-value=25 Score=27.11 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=26.8
Q ss_pred hhhhhhccchhhhhcccccceecCCCcccccccccccceEEEEEEeCcccc-----chhHHHHHHHHcCCeEEEEEe
Q psy1618 11 TFLEHEYEGEEEERSEAESVKLDGDEVPAPIVQNLHCYEYTLALVKPHAFR-----HVEDIEQTIQEKGFTIVKKKT 82 (178)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~E~Tl~lIKPdav~-----~~g~II~~i~~~Gf~Iv~~k~ 82 (178)
+|.|--+.+-+++.+.+.--.....+-..|.|...+..=.+++|++|+.-. -+..+-..|.++|-.|.....
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Mr~YE~m~IlrPdl~eeev~alver~~~iI~~~GG~I~~ve~ 103 (168)
T 3bbn_F 27 SFFEGGFGGLDEDPPSTPPAGLAVEEKPEPQCPPGLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFN 103 (168)
T ss_dssp -----------------------------------CEEEEEEEEECTTSCHHHHHSTTHHHHHHHTTTSCEEEEEEE
T ss_pred ceeeccCCCcccCCCCCCCCCccccccccccCCCCCCceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 455555555333333333333445555566666654445678888998543 257778888889988887664
No 33
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=24.51 E-value=16 Score=30.77 Aligned_cols=56 Identities=11% Similarity=0.214 Sum_probs=37.6
Q ss_pred ccceecC-CCcccccccccccceEEEEEEeCcccc----chhHHHHHHHHcCCeEEEEEee
Q psy1618 28 ESVKLDG-DEVPAPIVQNLHCYEYTLALVKPHAFR----HVEDIEQTIQEKGFTIVKKKTF 83 (178)
Q Consensus 28 ~~~~~~~-D~~~~~~~~~~~~~E~Tl~lIKPdav~----~~g~II~~i~~~Gf~Iv~~k~~ 83 (178)
.-++||| .+--.|.+|+..-.+.-.-+.+|++.- ..|.|-+.|+++||.|...+=+
T Consensus 188 Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaag~VRR~L~~aGF~V~k~~G~ 248 (308)
T 3vyw_A 188 DAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSSLSVRKSLLTLGFKVGSSREI 248 (308)
T ss_dssp EEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCCHHHHHHHHHTTCEEEEEECC
T ss_pred eEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCcHHHHHHHHHCCCEEEecCCC
Confidence 3456663 344445577764445555566777764 3699999999999999877643
Done!