RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1618
(178 letters)
>gnl|CDD|239880 cd04418, NDPk5, Nucleoside diphosphate kinase homolog 5 (NDP kinase
homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced
apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is
almost exclusively found in testis, especially in the
flagella of spermatids and spermatozoa, in association
with axoneme microtubules, and may play a role in
spermatogenesis by increasing the ability of late-stage
spermatids to eliminate reactive oxygen species. It
belongs to the nm23 Group II genes and appears to differ
from the other human NDPks in that it lacks two
important catalytic site residues, and thus does not
appear to possess NDP kinase activity. NDPk5 confers
protection from cell death by Bax and alters the
cellular levels of several antioxidant enzymes,
including glutathione peroxidase 5 (Gpx5).
Length = 132
Score = 118 bits (297), Expect = 1e-34
Identities = 53/115 (46%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 49 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 108
E TLA++KP A E+IE I E GFTIV+K+ + +PEQ ++F+ E + P L
Sbjct: 1 ERTLAIIKPDAVHKAEEIEDIILESGFTIVQKRKLQLSPEQCSDFYA--EHYGKMFFPHL 58
Query: 109 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNG 163
V YM SGP+ MVLA+ AI W L+GP + KAK +P SLRA YG +D+ N
Sbjct: 59 VAYMSSGPIVAMVLARHNAISYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNA 113
>gnl|CDD|238335 cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks):
NDP kinases, responsible for the synthesis of nucleoside
triphosphates (NTPs), are involved in numerous
regulatory processes associated with proliferation,
development, and differentiation. They are vital for
DNA/RNA synthesis, cell division, macromolecular
metabolism and growth. The enzymes generate NTPs or
their deoxy derivatives by terminal (gamma)
phosphotransfer from an NTP such as ATP or GTP to any
nucleoside diphosphate (NDP) or its deoxy derivative.
The sequence of NDPk has been highly conserved through
evolution. There is a single histidine residue conserved
in all known NDK isozymes, which is involved in the
catalytic mechanism. The first confirmed metastasis
suppressor gene was the NDP kinase protein encoded by
the nm23 gene. Unicellular organisms generally possess
only one gene encoding NDP kinase, while most
multicellular organisms possess not only an ortholog
that provides most of the NDP kinase enzymatic activity
but also multiple divergent paralogous genes. The human
genome codes for at least nine NDP kinases and can be
classified into two groups, Groups I and II, according
to their genomic architecture and distinct enzymatic
activity. Group I isoforms (A-D) are well-conserved,
catalytically active, and share 58-88% identity between
each other, while Group II are more divergent, with only
NDPk6 shown to be active. NDP kinases exist in two
different quaternary structures; all known eukaryotic
enzymes are hexamers, while some bacterial enzymes are
tetramers, as in Myxococcus. The hexamer can be viewed
as trimer of dimers, while tetramers are dimers of
dimers, with the dimerization interface conserved.
Length = 133
Score = 112 bits (282), Expect = 2e-32
Identities = 46/116 (39%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E TLAL+KP A + +I I++ GF IV K T EQA EF++ + R P
Sbjct: 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRP--FFP 58
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 162
LV +M SGPV M+L K A+ W ++GP +P+ A+ + P SLRA +G + + N
Sbjct: 59 DLVQFMSSGPVVAMILEKDNAVGEWREMLGPTNPEIARHLAPGSLRADFGTDVLRN 114
>gnl|CDD|197791 smart00562, NDK, Enzymes that catalyze nonsubstrate specific
conversions of nucleoside diphosphates to nucleoside
triphosphates. These enzymes play important roles in
bacterial growth, signal transduction and pathogenicity.
Length = 135
Score = 105 bits (264), Expect = 1e-29
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E TLA++KP A + + +I + KGF IV K + T EQA EF+ E +
Sbjct: 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEEQAEEFYAEHEGKP--FFN 58
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 162
LV +M SGPV MVL + A++ W LMGP DP +A P ++R +G++ N
Sbjct: 59 DLVEFMTSGPVVAMVLEGEDAVKTWRTLMGPTDPREAA---PGTIRGDFGLDIGRN 111
>gnl|CDD|239879 cd04416, NDPk_TX, NDP kinase domain of thioredoxin
domain-containing proteins (TXNDC3 and TXNDC6): Txl-2
(TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of
Group II N-terminal thioredoxin domains followed by one
or three NDP kinase domains, respectively. Sptrx-2,
which has a tissue specific distribution in human
testis, has been considered as a member of the nm23
family (nm23-H8) and exhibits a high homology with sea
urchin IC1 (intermediate chain-1) protein, a component
of the sperm axonemal outer dynein arm complex. Txl-2 is
mainly represented in close association with
microtubules within tissues with cilia and flagella such
as seminiferous epithelium (spermatids) and lung airway
epithelium, suggesting possible role in control of
microtubule stability and maintenance.
Length = 132
Score = 103 bits (259), Expect = 7e-29
Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 49 EYTLALVKPHAFR-HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPR 107
EYTLAL+KP A ++I + I+E GF I+ +K T EQA EF+ EE D
Sbjct: 1 EYTLALIKPDAVAEKKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEED--YFED 58
Query: 108 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 162
LV +M SGP ++VL+K+ A+ W LMGP DP++AK P SLRA++ + + N
Sbjct: 59 LVEFMTSGPSLILVLSKENAVEEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSN 113
>gnl|CDD|239877 cd04414, NDPk6, Nucleoside diphosphate kinase 6 (NDP kinase 6,
NDPk6, NM23-H6; NME6; Inhibitor of p53-induced
apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding
NDPk6 is expressed mainly in mitochondria, but also
found at a lower level in most tissues. NDPk6 has all
nine residues considered crucial for enzyme structure
and activity, and has been found to have NDP kinase
activity. It may play a role in cell growth and cell
cycle progression. The nm23-H6 gene locus has been
implicated in a variety of malignant tumors.
Length = 135
Score = 103 bits (258), Expect = 9e-29
Identities = 47/119 (39%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 49 EYTLALVKPHAFRH---VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKV 105
+ TLAL+KP A H +E + Q I GFTIV+KK ++T E A F+ E +
Sbjct: 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFY--AEHKGKFFY 58
Query: 106 PRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGS 164
RLV +M SGP ++LA + AI+ W LMGP +A+ P S+R YG+ D N +
Sbjct: 59 DRLVSFMTSGPSWALILAHENAIKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNAT 117
>gnl|CDD|201162 pfam00334, NDK, Nucleoside diphosphate kinase.
Length = 135
Score = 101 bits (253), Expect = 7e-28
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 49 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E TL ++KP A + +I ++KGF IV K + T EQA E + + + P
Sbjct: 1 ERTLVIIKPDAVQRGLIGEIISRFEKKGFKIVALKMLQLTREQAEEHYAEHKGKP--FFP 58
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 162
LV +M SGPV MVL + A+ LMG +P +A P ++R + V+ N
Sbjct: 59 GLVEFMTSGPVVAMVLEGENAVSVVRELMGATNPAEAA---PGTIRGDFAVSIGRN 111
>gnl|CDD|215503 PLN02931, PLN02931, nucleoside diphosphate kinase family protein.
Length = 177
Score = 86.8 bits (215), Expect = 7e-22
Identities = 47/112 (41%), Positives = 66/112 (58%), Gaps = 4/112 (3%)
Query: 49 EYTLALVKPHAF--RHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E TLA++KP + E I++ I E GF+IVK+ T + ++A+ F+ R P
Sbjct: 30 ERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRS--FFP 87
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVN 158
LV YM SGPV VMVL K+ A+ W L+GP D KAK +P S+RA G++
Sbjct: 88 SLVKYMTSGPVLVMVLEKENAVSDWRTLIGPTDARKAKISHPNSIRAMCGLD 139
>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 134
Score = 85.0 bits (211), Expect = 1e-21
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 51 TLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKV-PR 107
T+ ++KPHA H + +I Q I ++GF I + F T A EF + V P
Sbjct: 3 TVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVY--KGVVPELPA 60
Query: 108 LVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNG 163
+V + SGP + +A + A++ + GP DP+ AK++ P +LRA+YG + + N
Sbjct: 61 MVDELTSGPCIALEIAGENAVKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNA 116
>gnl|CDD|239878 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 domain A (NDPk7A):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 131
Score = 81.7 bits (202), Expect = 2e-20
Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 49 EYTLALVKPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 108
E TLAL+KP A+ + I Q I++ GFTI K K K + ++A +F+ E + L
Sbjct: 1 EKTLALIKPDAYSKIGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYA--EHQSKPFYNEL 58
Query: 109 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 162
V +M SGP+ M L AI W L+GP + A+ P S+RA +G + N
Sbjct: 59 VQFMTSGPIVAMELVGDDAISEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRN 112
>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved
proteins from bacteria to humans that generally catalyze
the transfer of gamma-phosphates of a nucleoside
triphosphate (NTP) donor onto a nucleoside diphosphate
(NDP) acceptor through a phosphohistidine intermediate.
The mammalian nm23/NDP kinase gene family can be divided
into two distinct groups. The group I genes encode
proteins that generally have highly homologous
counterparts in other organisms and possess the classic
enzymatic activity of a kinase. This group includes
vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its
counterparts in bacteria, archea and other eukaryotes.
NDP kinases exist in two different quaternary
structures; all known eukaryotic enzymes are hexamers,
while some bacterial enzymes are tetramers, as in
Myxococcus. They possess the NDP kinase active site
motif (NXXH[G/A]SD) and the nine residues that are most
essential for catalysis.
Length = 130
Score = 79.8 bits (198), Expect = 1e-19
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 49 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E TL ++KP + + +I + KG IV K + T E A E + + + P P
Sbjct: 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGK-PFF-P 58
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 162
LV +M SGPV MVL + A++ LMG +P A P ++R + ++ N
Sbjct: 59 ELVEFMTSGPVVAMVLEGENAVKTVRKLMGATNPADAA---PGTIRGDFALSIGRN 111
>gnl|CDD|179085 PRK00668, ndk, mulitfunctional nucleoside diphosphate
kinase/apyrimidinic endonuclease/3'-; Validated.
Length = 134
Score = 70.9 bits (175), Expect = 3e-16
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 7/112 (6%)
Query: 49 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E T +++KP A + + +I ++KG IV K + + E A + +E+ P
Sbjct: 2 ERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEK-PF-FG 59
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVN 158
LV +M SGPV VMVL + AI + LMG +P +A P ++R + ++
Sbjct: 60 ELVEFMTSGPVVVMVLEGENAIAKVRELMGATNPAEAA---PGTIRGDFALS 108
>gnl|CDD|223183 COG0105, Ndk, Nucleoside diphosphate kinase [Nucleotide transport
and metabolism].
Length = 135
Score = 67.6 bits (166), Expect = 5e-15
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 49 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E TL+++KP A + + +I ++KG IV K + + E A + + + P
Sbjct: 3 ERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGK-PFF-G 60
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGV 157
LV ++ SGPV MVL + AI LMG +P A P ++R + +
Sbjct: 61 ELVEFITSGPVVAMVLEGENAISVVRKLMGATNPANAA---PGTIRGDFAL 108
>gnl|CDD|173010 PRK14544, PRK14544, nucleoside diphosphate kinase; Provisional.
Length = 183
Score = 57.1 bits (138), Expect = 1e-10
Identities = 44/145 (30%), Positives = 62/145 (42%), Gaps = 36/145 (24%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREE------- 99
E TL ++KP A + V +I ++ G IV K K TPEQ F+ + EE
Sbjct: 4 ERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGN 63
Query: 100 -------------------RDPVKVPR-----LVCYMVSGPVRVMVLAKQKAIRRWLHLM 135
DPV+V + LV YM SGP+ MVL +A+ L+
Sbjct: 64 KLLKAYQELGIDPRARLGTDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLV 123
Query: 136 GPVDPDKAKRIYPLSLRAKYGVNDI 160
GP P KA P ++R Y ++
Sbjct: 124 GPTSPHKAP---PGTIRGDYSIDSP 145
>gnl|CDD|173008 PRK14542, PRK14542, nucleoside diphosphate kinase; Provisional.
Length = 137
Score = 55.8 bits (134), Expect = 1e-10
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 49 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
T ++KP + HV +I Q I+++GF I+ K K + E A +F+ R P
Sbjct: 2 SRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSAR-PF-YN 59
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAK 144
L YM SGP+ L + A+ W ++G DP +A
Sbjct: 60 DLCNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAA 97
>gnl|CDD|173007 PRK14541, PRK14541, nucleoside diphosphate kinase; Provisional.
Length = 140
Score = 52.6 bits (126), Expect = 3e-09
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E TL ++KP R + + I+ GF +V K + T E A EF+ ER P
Sbjct: 2 ERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRER-PF-YG 59
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGS 164
LV +M SGP M+L K+ A+ + L+G DP +A L A +I++GS
Sbjct: 60 ELVEFMSSGPCVPMILEKENAVADFRTLIGATDPAEAAEGTVRKLYADSKGENIVHGS 117
>gnl|CDD|184733 PRK14540, PRK14540, nucleoside diphosphate kinase; Provisional.
Length = 134
Score = 49.4 bits (118), Expect = 4e-08
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E T +KP A + I Q + KGF IV+ K K T E A E++ E +
Sbjct: 3 ERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYY--EEHKGKEFYE 60
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYG 156
RL+ +M SG + MV+ + AI ++G +P +A+ P ++R +G
Sbjct: 61 RLINFMTSGRIVAMVIEGENAISTVRKMIGKTNPAEAE---PGTIRGDFG 107
>gnl|CDD|184734 PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional.
Length = 139
Score = 48.4 bits (115), Expect = 1e-07
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 51 TLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 108
T ++KP A H+ I I GF IV K + T A F+ ER P L
Sbjct: 6 TFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAER-PF-YGEL 63
Query: 109 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKA 143
V +M GP+ +L K+ A+ + L+G +P A
Sbjct: 64 VEFMSRGPIVAAILEKENAVEDFRTLIGATNPADA 98
>gnl|CDD|173387 PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic;
Provisional.
Length = 149
Score = 40.5 bits (95), Expect = 9e-05
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E T +VKP + V +I + ++KG+ +V K + TPE A E + + + P P
Sbjct: 3 ERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGK-PF-FP 60
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVN---DIMNG 163
LV Y+ SGPV MV + +++ L+G +P ++ P ++R + V+ ++++G
Sbjct: 61 GLVKYISSGPVVCMVWEGKNVVKQGRKLLGATNPLESA---PGTIRGDFCVDVGRNVIHG 117
Query: 164 S 164
S
Sbjct: 118 S 118
>gnl|CDD|178228 PLN02619, PLN02619, nucleoside-diphosphate kinase.
Length = 238
Score = 31.4 bits (71), Expect = 0.17
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E T +KP + + +I + KGF +V K + E A + + +ER P
Sbjct: 89 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKER-PF-FN 146
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGV---NDIMNG 163
L ++ SGPV MV + I+ L+G DP K++ P ++R V +I++G
Sbjct: 147 GLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSE---PGTIRGDLAVVVGRNIIHG 203
Query: 164 S 164
S
Sbjct: 204 S 204
>gnl|CDD|112775 pfam03976, PPK2, Polyphosphate kinase 2 (PPK2). Inorganic
polyphosphate (polyP) plays a role in metabolism and
regulation and has been proposed to serve as a energy
source in a pre-ATP world. In prokaryotes, the synthesis
and utilisation of polyP are catalyzed by PPK1, PPK2 and
polyphosphatases. Proteins with a single PPK2 domain
catalyze polyP-dependent phosphorylation of ADP to ATP,
whereas proteins containing 2 fused PPK2 domains
phosphorylate AMP to ADP. The structure of PPK2 from
Pseudomonas aeruginosa has revealed a a 3-layer
alpha/beta/alpha sandwich fold with an alpha-helical lid
similar to the structures of microbial thymidylate
kinases.
Length = 229
Score = 28.5 bits (64), Expect = 1.6
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 59 AFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVK 104
R + + E+ + E G +V K + E+ E F R DP+K
Sbjct: 119 FLREIPEFERMLTESGIRVV-KFWLSISDEEQLERFKERRN-DPLK 162
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel,
four-helix bundle structure with a large hydrophobic
patch in which 23 residues of one monomer form van der
Waals contacts with the other monomer. This CENP-B
dimer configuration may be suitable for capturing two
distant CENP-B boxes during centromeric heterochromatin
formation.
Length = 101
Score = 27.0 bits (59), Expect = 2.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 14 EHEYEGEEEERSEAESVKLDGDEVPAP 40
E E + +E+E + E D DEVP P
Sbjct: 18 EEEDDDDEDEEDDDEDDDEDDDEVPVP 44
>gnl|CDD|99793 cd06196, FNR_like_1, Ferredoxin reductase-like proteins catalyze
electron transfer between an NAD(P)-binding domain of
the alpha/beta class and a discrete (usually
N-terminal) domain which varies in orientation with
respect to the NAD(P) binding domain. The N-terminal
region may contain a flavin prosthetic group (as in
flavoenzymes) or use flavin as a substrate. Ferredoxin
is reduced in the final stage of photosystem I. The
flavoprotein Ferredoxin-NADP+ reductase transfers
electrons from reduced ferredoxin to FAD (forming FADH2
via a semiquinone intermediate) which then transfers a
hydride ion to convert NADP+ to NADPH.
Length = 218
Score = 27.2 bits (61), Expect = 3.9
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 75 FTIVKKKTFKFTPEQAAEFFITRE 98
K + + FTP QA E I +
Sbjct: 18 LRFDKPEGYDFTPGQATEVAIDKP 41
>gnl|CDD|226845 COG4421, COG4421, Capsular polysaccharide biosynthesis protein
[Carbohydrate transport and metabolism].
Length = 368
Score = 27.5 bits (61), Expect = 4.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 64 EDIEQTIQEKGFTIVKKKTFKFTPEQAAEF 93
E++E+ +Q G TIV+ +T EQA F
Sbjct: 244 EEVERLLQRSGLTIVRPETL-GPREQARLF 272
>gnl|CDD|239569 cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases
(RTs) in bacterial retrotransposons or retrons. The
polymerase reaction of this enzyme leads to the
production of a unique RNA-DNA complex called msDNA
(multicopy single-stranded (ss)DNA) in which a small
ssDNA branches out from a small ssRNA molecule via a
2'-5'phosphodiester linkage. Bacterial retron RTs
produce cDNA corresponding to only a small portion of
the retron genome.
Length = 214
Score = 26.8 bits (60), Expect = 6.1
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 56 KPHAFRHVEDIEQTIQEKGFTIVKKKTFKFTP 87
K + +E I + E+GF I K KT +
Sbjct: 153 KEALDKLLEIIRSILSEEGFKINKSKTRISSK 184
>gnl|CDD|204159 pfam09179, TilS, TilS substrate binding domain. This domain is
found in the tRNA(Ile) lysidine synthetase (TilS)
protein.
Length = 69
Score = 24.9 bits (55), Expect = 7.8
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 122 LAKQKA-IRRWLHLMGPVDPDKA--KRIYPLSLRAK 154
A+Q+ +R WL +G P +A + I L AK
Sbjct: 11 PARQRNLLRYWLAQLGLPMPSQAQLEEILRQLLLAK 46
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 26.2 bits (58), Expect = 8.7
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 113 VSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSL 151
+ PV V+ ++K +AI R + V + YP L
Sbjct: 115 IEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHL 153
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.396
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,285,949
Number of extensions: 863345
Number of successful extensions: 1036
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1008
Number of HSP's successfully gapped: 38
Length of query: 178
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 87
Effective length of database: 6,901,388
Effective search space: 600420756
Effective search space used: 600420756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)