RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1618
(178 letters)
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 86.2 bits (213), Expect = 1e-22
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E T +KP + V +I + ++KGF +V K + + E + +I + +D P
Sbjct: 4 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYI--DLKDRPFFP 61
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 162
LV YM SGPV MV ++ ++G +P +K P ++R + + N
Sbjct: 62 GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRN 114
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 85.4 bits (211), Expect = 2e-22
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E TL L+KP + +I I+ KG TI + + E A++ + E
Sbjct: 2 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHY--AEHEGKPFFG 59
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 162
L+ ++ SGPV ++ +AI L G DP +A P ++R + + N
Sbjct: 60 SLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAA--PGTIRGDFALETQFN 113
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 85.8 bits (212), Expect = 2e-22
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 48 YEYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKV 105
+E T VKP + V +I + + KGF +V K + + E E + E R+
Sbjct: 4 HERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHY--AELRERPFY 61
Query: 106 PRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNG 163
RLV YM SGPV MV +R L+G +P A P ++R + + N
Sbjct: 62 GRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAP---PGTIRGDFCIEVGKNL 116
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 83.6 bits (206), Expect = 3e-21
Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 36/155 (23%)
Query: 49 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKV- 105
E TL ++KP A V++I ++ G IV K K +PE+ F+ + EE
Sbjct: 3 EKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQ 62
Query: 106 ------------------------------PRLVCYMVSGPVRVMVLAKQKAIRRWLHLM 135
LV YM SGP VMVL +A+ L+
Sbjct: 63 KLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLV 122
Query: 136 GPVDPDKAKRIYPLSLRAKYGVNDIMNGSWVLQIL 170
GP P A P ++R Y ++ + +++
Sbjct: 123 GPTSPHSAP---PGTIRGDYSIDSPDLAAEEGRVV 154
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human
(Homo sapiens), NDK4 [TaxId: 9606]}
Length = 143
Score = 82.0 bits (202), Expect = 5e-21
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E TL VKP + V D+ Q + +GFT+V K + AE + ++ R P
Sbjct: 6 ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHY--QDLRRKPFYP 63
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 162
L+ YM SGPV MV +R ++G D +A P ++R + V+ N
Sbjct: 64 ALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAA---PGTIRGDFSVHISRN 116
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 81.2 bits (200), Expect = 1e-20
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E T +VKP + + DI ++ KG +V K + E A E + E D
Sbjct: 3 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHY--AEHEDKPFFD 60
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 162
LV ++ SGPV MV A R+ LMG D A P ++R YG + N
Sbjct: 61 GLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAA---PGTIRGDYGNDLGHN 113
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
3702]}
Length = 153
Score = 79.7 bits (196), Expect = 4e-20
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 49 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E T +VKP + V +I ++KGF ++ K F+ E A E + ++ P
Sbjct: 6 EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHY--KDLSAKSFFP 63
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 162
L+ Y+ SGPV M + L+G DP +A+ P ++R V N
Sbjct: 64 NLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAE---PGTIRGDLAVQTGRN 116
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK
{Myxococcus xanthus [TaxId: 34]}
Length = 143
Score = 78.5 bits (193), Expect = 1e-19
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E TL+++KP + I +EKG V + + QA F+ + R
Sbjct: 3 ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARP--FFK 60
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 162
LV +M+SGPV +MVL + A+ +MG +P +A ++R + + N
Sbjct: 61 DLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQA---AEGTIRKDFATSIDKN 113
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 78.1 bits (192), Expect = 1e-19
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E T ++KP R V +I + KGF I K + + E A + E R+ P
Sbjct: 2 ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHY--AEHREKPFFP 59
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 162
LV ++ SGPV MVL + +MG P A P ++R + N
Sbjct: 60 GLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDAL---PGTIRGDFATTIDEN 112
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 78.1 bits (192), Expect = 2e-19
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 49 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E T +KP + + +I + KGF +V K T + A + + +ER
Sbjct: 4 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPF--FN 61
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNG 163
L ++ SGPV MV + I L+G DP K+ P ++R V N
Sbjct: 62 GLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSA---PGTIRGDLAVVVGRNI 115
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 76.2 bits (187), Expect = 1e-18
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E T VKP V +I ++KGF +V K T + A + +ER
Sbjct: 4 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 63
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 162
++ SGPV MV + + ++G +P + P S+R +GV+ N
Sbjct: 64 V--SFITSGPVVAMVFEGKGVVASARLMIGVTNPLASA---PGSIRGDFGVDVGRN 114
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 149
Score = 75.4 bits (185), Expect = 2e-18
Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 49 EYTLALVKPHAFR--HVEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E + ++KP + V I + ++KG+ ++ K T E E + +E D
Sbjct: 2 EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHY--KELSDQPFFK 59
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 162
LV Y+ GPV MV +++ L+G +P + ++R + + N
Sbjct: 60 NLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSN---TGTIRGDFCLEVSKN 112
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus
halodenitrificans [TaxId: 1482]}
Length = 149
Score = 73.6 bits (180), Expect = 1e-17
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 7/119 (5%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E T +VKP + V ++ + + KG + K + + AA +
Sbjct: 2 ERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPF--FG 59
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSW 165
LV SGPV MV A ++G +P A P ++R +GV+ N
Sbjct: 60 GLVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAA---PGTIRGDFGVSAGRNAIH 115
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 71.6 bits (175), Expect = 4e-17
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E T ++KP + + ++ ++KGFT+ K A + + +
Sbjct: 2 EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSF--FS 59
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNGSW 165
LV Y+VSGPV M+ + + ++G +P ++ P ++R + ++ N
Sbjct: 60 GLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASE---PGTIRGDFAIDIGRNVIH 115
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
{Mimivirus [TaxId: 315393]}
Length = 128
Score = 67.8 bits (165), Expect = 1e-15
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
Query: 51 TLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVPRL 108
TL L+KP AF V +I I++K F IV K + P E +E +
Sbjct: 3 TLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHY-KEHSEQSYFNDN 61
Query: 109 VCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMN 162
+MVSGP+ +V AI + L G + P ++R + N
Sbjct: 62 CDFMVSGPIISIVYEGTDAISKIRRLQGN-------ILTPGTIRGDLANDIREN 108
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 153
Score = 67.4 bits (164), Expect = 2e-15
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 4/117 (3%)
Query: 49 EYTLALVKPHAFRH--VEDIEQTIQEKGFTIVKKKTFKFTPEQAAEFFITREERDPVKVP 106
E TL ++KP A + +I ++KG IV K E A + + E R+
Sbjct: 3 ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHY--EEHREKPFFK 60
Query: 107 RLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLSLRAKYGVNDIMNG 163
L+ Y+ PV VMVL + A+ + G DP A + I N
Sbjct: 61 ALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNV 117
>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose
pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 292
Score = 25.8 bits (56), Expect = 2.7
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 84 KFTPEQAAEFFITREERDPVKVPRLVCYMVSGPVRVMVLA-KQKAIRRWLHLMGPVDPD 141
++ P AA+ ITR +RD + + VSG + +A K+K W G VDP
Sbjct: 106 RWGPNHAADPIITRWKRDSSGN--KIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPG 162
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 131
Score = 24.9 bits (54), Expect = 4.4
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 15/115 (13%)
Query: 64 EDIEQTIQEKGFTIVKKK--TFKFTPE------QAAEFFITREERDPVKVPRLVCYMVSG 115
+++ + + +K K + + E + VKV + G
Sbjct: 17 AELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDG 76
Query: 116 PVRVMVLAKQKAIRRWLHLM---GPVDPDKA----KRIYPLSLRAKYGVNDIMNG 163
V + L K + W L+ ++ K ++ L + V+ +G
Sbjct: 77 KVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVSGPSSG 131
>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal
domain {Clostridium symbiosum [TaxId: 1512]}
Length = 375
Score = 25.0 bits (53), Expect = 5.7
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 60 FRHVEDIEQTIQEKGFTIVKKKTFKFTP--------EQAAEFFITREE 99
FR ++D+E TI+E ++ + K T + E IT EE
Sbjct: 315 FRDMQDMEFTIEEGKLYFLQTRNGKRTAPAALQIACDLVDEGMITEEE 362
>d2o0qa1 d.166.1.7 (A:2-114) Hypothetical protein CC0527
{Caulobacter crescentus [TaxId: 155892]}
Length = 113
Score = 24.0 bits (52), Expect = 6.4
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 133 HLMGPVDPDKAKRIYPLSLRA 153
HL P+ + R L L A
Sbjct: 82 HLYRPLLVSEVTREADLDLDA 102
>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 194
Score = 24.8 bits (54), Expect = 6.4
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 127 AIRR----WLHLMGPVDPDKAKRIYPLSLRAKYG 156
IRR +L L+GP P K+ I +R
Sbjct: 43 GIRRDVEVYLLLLGPPSPPKSILIKGDEVRRMSP 76
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa
(LmjF30.0810) {Leishmania major [TaxId: 5664]}
Length = 254
Score = 24.6 bits (52), Expect = 7.0
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 57 PHAFRHVEDIEQTIQEKGFTIVKKKTFKFTPEQ 89
R ++ E G +VK+ + P
Sbjct: 212 SSLTRSDIHYKRLFNESGVRVVKEAFQEEWPTD 244
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 24.5 bits (52), Expect = 7.5
Identities = 10/66 (15%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 21 EEERSEAESVKLDGDEVPAPIVQNLHCYEYTLA---LVKPHAFRHVEDIEQTIQEKGFTI 77
++ R + K++ +++ ++++ Y +TL F + + G ++
Sbjct: 145 KQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSL 204
Query: 78 VKKKTF 83
V++K F
Sbjct: 205 VERKGF 210
>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur
protein, N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 106
Score = 23.7 bits (51), Expect = 7.9
Identities = 11/56 (19%), Positives = 18/56 (32%)
Query: 95 ITREERDPVKVPRLVCYMVSGPVRVMVLAKQKAIRRWLHLMGPVDPDKAKRIYPLS 150
I +E+DP R C + + + + + P K I PL
Sbjct: 40 IQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLP 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.396
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 682,964
Number of extensions: 31502
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 33
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)