BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16181
         (480 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BDL|A Chain A, Crystal Structure Of A Truncated Human Tudor-Sn
          Length = 570

 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 15/114 (13%)

Query: 372 KERAAVVLEIINGDGLVIKY-VGDTKEEKVFLSSIKPPRPDXXXXXXXXXXXXPVVRSKP 430
           K+  A V++++N D +V+K   GD K   + LSSI+PPR +               + +P
Sbjct: 23  KQFVAKVMQVLNADAIVVKLNSGDYK--TIHLSSIRPPRLEGENTQDKNK------KLRP 74

Query: 431 LYDVPWLYEAREFLRTRLIGKKVMVSEDY------AQDARDKFPEKKCVSVFVG 478
           LYD+P+++EAREFLR +LIGKKV V+ DY      A +    F E+ C +V +G
Sbjct: 75  LYDIPYMFEAREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIG 128



 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 164/393 (41%), Gaps = 88/393 (22%)

Query: 8   VIYRKGLVKFVNSGDSITL----ITDPKLRTEVTFLFTNVQAPKIARRPRADGPPSAQPE 63
           V+    +V  +NSGD  T+    I  P+L  E      N Q      RP  D P      
Sbjct: 32  VLNADAIVVKLNSGDYKTIHLSSIRPPRLEGE------NTQDKNKKLRPLYDIP------ 79

Query: 64  DEPYAWEAREFLRKLIIGKIVWYTAE--KPEGNRYYGTLFYPNQDDDITKRSCGIRRKSR 121
              Y +EAREFLRK +IGK V  T +  +P       T   P      ++R+C       
Sbjct: 80  ---YMFEAREFLRKKLIGKKVNVTVDYIRPASP---ATETVPA----FSERTC------- 122

Query: 122 KAIATMAHCSI-QTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEG 180
            A  T+   +I +  V KG  ++                         DDD         
Sbjct: 123 -ATVTIGGINIAEALVSKGLATVIRYR--------------------QDDD--------- 152

Query: 181 WVSLRSKNPD-LLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPEPKQVLDKFGKRI--V 237
               RS + D LL  E +A + GKG +S ++ P   V  I+ D +  +    F +R    
Sbjct: 153 ---QRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRS 209

Query: 238 KAVIDNINPGLTMRAFLLPDHYYVAFCLSGIK----------IVRENEEYGREVRQYLEE 287
           +AV++ +  G  ++ +L  +   + F L+GI+          +V+E E +  E   + +E
Sbjct: 210 EAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKE 269

Query: 288 RILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKL 347
            +LQR+V V +ES+    N I    L  +G  +++  LLV    +  +   +     K L
Sbjct: 270 LVLQREVEVEVESMDKAGNFI--GWLHIDGANLSV--LLVEHALSKVHFTAERSSYYKSL 325

Query: 348 REAEKLAQSERKRRWTNYTPKKPPKERAAVVLE 380
             AE+ A+ ++++ W +Y  ++ P E    VLE
Sbjct: 326 LSAEEAAKQKKEKVWAHY--EEQPVEEVMPVLE 356


>pdb|4A55|A Chain A, Crystal Structure Of P110alpha In Complex With Ish2 Of
           P85alpha And The Inhibitor Pik-108
          Length = 1096

 Score = 28.9 bits (63), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 254 LLPDHYYVAF-CLSGIKIVRENEEYGREVRQYLEERILQRDVNVIIESVQNEKNR 307
           LLP+   V   CL    +V    E  RE R+Y   ++LQ + + I  SV  E  R
Sbjct: 53  LLPNGMIVTLECLREATLVTIKHELFREARKYPLHQLLQDETSYIFVSVTQEAER 107


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,354,445
Number of Sequences: 62578
Number of extensions: 599056
Number of successful extensions: 1358
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1352
Number of HSP's gapped (non-prelim): 5
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)