BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16181
(480 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZT42|SND1_DANRE Staphylococcal nuclease domain-containing protein 1 OS=Danio rerio
GN=snd1 PE=2 SV=1
Length = 897
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 193/343 (56%), Gaps = 44/343 (12%)
Query: 168 TDDDITKLLISEGWV-----SLRSKNPD---LLDLENKAKEAGKGKYSTRDEPSAHVRSI 219
+ ++I + L++EG +R NP+ L DLE++AK + KG +S S +R +
Sbjct: 119 SGENIAESLVAEGLAMVRREGIRGNNPEQVRLCDLEDQAKSSKKGLWS-EGGGSHTIRDL 177
Query: 220 NWDPE-PKQVLDKFGKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIK---IVREN- 274
+ E P+ +D ++ V A+I+++ G +RA LLPD+Y V LSGIK RE
Sbjct: 178 KYTIENPRNFVDSLHQKPVNAIIEHVRDGCMVRALLLPDYYLVTVMLSGIKSPTFKREAD 237
Query: 275 -----EEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVRE 329
E + E + + E R+LQRDV +I+ES N+ ++ T++H NI ELL++E
Sbjct: 238 GSETPEPFAAEAKFFTESRLLQRDVQIILESCPNQ---VILGTILHPNG--NITELLLKE 292
Query: 330 GFASCNTLLQGVYDE--KKLREAEKLAQSERKRRWTNY---TPKKPPKER--AAVVLEII 382
GFA C VY + +KLR AE+ A+ + R W +Y T K+R A V++++
Sbjct: 293 GFARCVDWSMAVYTQGAEKLRAAERSAKERKVRIWKDYVAPTANLDQKDRQFVAKVMQVV 352
Query: 383 NGDGLVIKYVGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKAPVVRSKPLYDVPWLYEARE 442
N D +V+K + + + + LSSI+PPR +G + K R +PLYD+P+++EARE
Sbjct: 353 NADAIVVK-LNSGEYKTIHLSSIRPPRLEGEE-----KNKDKDKRFRPLYDIPYMFEARE 406
Query: 443 FLRTRLIGKKVMVSEDYAQDARD-------KFPEKKCVSVFVG 478
FLR +LIGKKV V+ DY + A + FPE+ C +V +G
Sbjct: 407 FLRKKLIGKKVNVTVDYIRAATNAMEMGVPAFPERTCATVTIG 449
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 137/332 (41%), Gaps = 66/332 (19%)
Query: 64 DEPYAWEAREFLRKLIIGKIVWYTAEKPEGNRYYGTLFYPNQDDDITKRSCGIRRKSRKA 123
D PY +EAREFLRK +IGK V T + + P +R+C A
Sbjct: 397 DIPYMFEAREFLRKKLIGKKVNVTVDYIRAATNAMEMGVPA----FPERTC--------A 444
Query: 124 IATMAHCSI-QTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEGWV 182
T+ +I + V KG ++ DDD
Sbjct: 445 TVTIGGINIAEALVSKGLATVIRYR--------------------QDDD----------- 473
Query: 183 SLRSKNPD-LLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPEPKQVLDKFGKRI--VKA 239
RS + D LL E +A + GKG +S ++ P V I+ + + + F +R +A
Sbjct: 474 -QRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISGETQKAKQFFPFLQRAGRSEA 532
Query: 240 VIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVREN----------EEYGREVRQYLEERI 289
V++ + G ++ ++ + + F L+GI+ R + E Y E + +E +
Sbjct: 533 VVEYVFSGSRLKLYMPKETCLITFLLAGIECPRGSRNMPGGMQVAEPYSEEAMLFTKELV 592
Query: 290 LQRDVNVIIESVQNEKNRIMNATLIH-EGQKMNIGELLVREGFASCNTLLQGVYDEKKLR 348
LQR+V V +ES+ N I +H +G +N+ LV + + + K L
Sbjct: 593 LQREVEVEVESMDIAGNFI---DWLHIDG--VNLSVALVENALSKVHFTAERSSYYKTLV 647
Query: 349 EAEKLAQSERKRRWTNYTPKKPPKERAAVVLE 380
AE+ A+ +++ W NY K P E A V E
Sbjct: 648 SAEESARQRKEKLWANYEEK--PNEEVAQVTE 677
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 11 RKGLVKFVNSGDSITLITDPKLRT--EVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYA 68
++G+VK V SG +I + P+ E +N++A +ARR P + DEP+A
Sbjct: 20 QRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQPDTKDTPDEPWA 79
Query: 69 WEAREFLRKLIIGKIVWYTAEK--PEGNRYYGTLF 101
++AREF+RK +IGK V +T E P+G R YG ++
Sbjct: 80 FQAREFMRKKVIGKEVCFTVENKTPQG-REYGMVY 113
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 10/86 (11%)
Query: 371 PKERAAVVLEIINGDGLVIK---YVGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKAPVVR 427
P+ + +V +++G ++++ G E ++ LS+I+ GA A +G+ P +
Sbjct: 17 PQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRA----GALARRAIQGQ-PDTK 71
Query: 428 SKPLYDVPWLYEAREFLRTRLIGKKV 453
P D PW ++AREF+R ++IGK+V
Sbjct: 72 DTP--DEPWAFQAREFMRKKVIGKEV 95
>sp|Q66X93|SND1_RAT Staphylococcal nuclease domain-containing protein 1 OS=Rattus
norvegicus GN=Snd1 PE=2 SV=1
Length = 909
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 188/340 (55%), Gaps = 45/340 (13%)
Query: 170 DDITKLLISEGWVS----LRSKNPD---LLDLENKAKEAGKGKYSTRDEPSAHVRSINWD 222
++I + L++EG S +R+ NP+ L + E +AK + KG +S + S +R + +
Sbjct: 120 ENIAESLVAEGLASRREGMRANNPEQNRLSECEEQAKASKKGMWSEGN-GSHTIRDLKYT 178
Query: 223 PE-PKQVLDKFGKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIK---IVREN---- 274
E P+ +D ++ V A+I+++ G +RA LLPDHY V LSGIK RE
Sbjct: 179 IENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDHYLVTVMLSGIKCPTFRRETDGSE 238
Query: 275 --EEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFA 332
E + E + + E R+LQRDV +I+ES N+ + T++H NI ELL++EGFA
Sbjct: 239 TPEPFAAEAKFFTESRLLQRDVQIILESCHNQN---ILGTILHPNG--NITELLLKEGFA 293
Query: 333 SCNTLLQGVYDE--KKLREAEKLAQSERKRRWTNYTP-----KKPPKERAAVVLEIINGD 385
C VY +KLR AE+ A+ R R W +Y P + K+ A V++++N D
Sbjct: 294 RCVDWSIAVYTRGAEKLRAAERFAKERRLRIWRDYVPPTANLDQKDKQFVAKVMQVLNAD 353
Query: 386 GLVIKY-VGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKAPVVRSKPLYDVPWLYEAREFL 444
+V+K GD K + LSSI+PPR +G + + +PLYD+P+++EAREFL
Sbjct: 354 AIVVKLNSGDYK--TIHLSSIRPPRLEGDNIQDKNK------KLRPLYDIPYMFEAREFL 405
Query: 445 RTRLIGKKVMVSEDY------AQDARDKFPEKKCVSVFVG 478
R +LIGKKV V+ DY A + F E+ C +V +G
Sbjct: 406 RKKLIGKKVSVTVDYIRPASPATETVPAFSERTCATVTIG 445
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 164/393 (41%), Gaps = 88/393 (22%)
Query: 8 VIYRKGLVKFVNSGDSITL----ITDPKLRTEVTFLFTNVQAPKIARRPRADGPPSAQPE 63
V+ +V +NSGD T+ I P+L + N+Q RP D P
Sbjct: 349 VLNADAIVVKLNSGDYKTIHLSSIRPPRLEGD------NIQDKNKKLRPLYDIP------ 396
Query: 64 DEPYAWEAREFLRKLIIGKIVWYTAE--KPEGNRYYGTLFYPNQDDDITKRSCGIRRKSR 121
Y +EAREFLRK +IGK V T + +P T P ++R+C
Sbjct: 397 ---YMFEAREFLRKKLIGKKVSVTVDYIRPASP---ATETVPA----FSERTC------- 439
Query: 122 KAIATMAHCSI-QTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEG 180
A T+ +I + V KG ++ DDD
Sbjct: 440 -ATVTIGGINIAEALVSKGLATVIRYR--------------------QDDD--------- 469
Query: 181 WVSLRSKNPD-LLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPEPKQVLDKFGKRI--V 237
RS + D LL E +A + GKG +S ++ P V I+ D + + F +R
Sbjct: 470 ---QRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRS 526
Query: 238 KAVIDNINPGLTMRAFLLPDHYYVAFCLSGIK----------IVRENEEYGREVRQYLEE 287
+AV++ + G ++ +L + + F L+GI+ +V+E E + E + +E
Sbjct: 527 EAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKE 586
Query: 288 RILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKL 347
+LQR+V V +ES+ N I L +G +++ LLV + + + K L
Sbjct: 587 LVLQREVEVEVESMDKAGNFI--GWLHMDGANLSV--LLVEHALSKVHFTAERSAYYKPL 642
Query: 348 REAEKLAQSERKRRWTNYTPKKPPKERAAVVLE 380
AE+ A+ +++ W +Y ++ P E VLE
Sbjct: 643 LSAEEAAKQRKEKVWAHY--EEQPVEEVMPVLE 673
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 11 RKGLVKFVNSGDSITLITDPKLRT--EVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYA 68
++G+VK V SG +I + P+ E +N++A +ARR A P DEP+A
Sbjct: 19 QRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDGKDTPDEPWA 78
Query: 69 WEAREFLRKLIIGKIVWYTAEK--PEGNRYYGTLF 101
+ AREFLRK +IGK V +T E P+G R YG ++
Sbjct: 79 FPAREFLRKKLIGKEVCFTIENKTPQG-REYGMIY 112
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 371 PKERAAVVLEIINGDGLVIK---YVGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKAPVVR 427
P + +V +++G ++++ G E ++ LS+I+ AA +GK
Sbjct: 16 PTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDGK----- 70
Query: 428 SKPLYDVPWLYEAREFLRTRLIGKKV 453
P D PW + AREFLR +LIGK+V
Sbjct: 71 DTP--DEPWAFPAREFLRKKLIGKEV 94
>sp|Q863B3|SND1_BOVIN Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus
GN=SND1 PE=1 SV=1
Length = 910
Score = 176 bits (446), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 187/340 (55%), Gaps = 45/340 (13%)
Query: 170 DDITKLLISEGWVS----LRSKNPD---LLDLENKAKEAGKGKYSTRDEPSAHVRSINWD 222
++I + L++EG + +R+ NP+ L + E +AK + KG +S + S +R + +
Sbjct: 121 ENIAESLVAEGLATRREGMRANNPEQNRLAECEEQAKASKKGMWSEGN-GSHTIRDLKYT 179
Query: 223 PE-PKQVLDKFGKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIK---IVREN---- 274
E P+ +D ++ V A+I+++ G +RA LLPD+Y V LSGIK RE
Sbjct: 180 IENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREADGSE 239
Query: 275 --EEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFA 332
E + E + + E R+LQRDV +I+ES N+ + T++H NI ELL++EGFA
Sbjct: 240 TPEPFAAEAKFFTESRLLQRDVQIILESCHNQN---ILGTILHPNG--NITELLLKEGFA 294
Query: 333 SCNTLLQGVYDE--KKLREAEKLAQSERKRRWTNYTP-----KKPPKERAAVVLEIINGD 385
C VY +KLR AE+ A+ R R W +Y + K+ A V++++N D
Sbjct: 295 RCVDWSIAVYTRGAEKLRAAERFAKERRLRIWRDYVAPTANLDQKDKQFVAKVMQVLNAD 354
Query: 386 GLVIKY-VGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKAPVVRSKPLYDVPWLYEAREFL 444
+V+K GD K + LSSI+PPR +G + + +PLYD+P+++EAREFL
Sbjct: 355 AIVVKLNSGDYK--TIHLSSIRPPRLEGENTQDKNK------KLRPLYDIPYMFEAREFL 406
Query: 445 RTRLIGKKVMVSEDY------AQDARDKFPEKKCVSVFVG 478
R +LIGKKV V+ DY A D F E+ C +V +G
Sbjct: 407 RKKLIGKKVNVTVDYIRPASPATDTVPAFSERTCATVTIG 446
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 163/393 (41%), Gaps = 88/393 (22%)
Query: 8 VIYRKGLVKFVNSGDSITL----ITDPKLRTEVTFLFTNVQAPKIARRPRADGPPSAQPE 63
V+ +V +NSGD T+ I P+L E N Q RP D P
Sbjct: 350 VLNADAIVVKLNSGDYKTIHLSSIRPPRLEGE------NTQDKNKKLRPLYDIP------ 397
Query: 64 DEPYAWEAREFLRKLIIGKIVWYTAEKPEGNRYYGTLFYPNQDD--DITKRSCGIRRKSR 121
Y +EAREFLRK +IGK V T + Y P D ++R+C
Sbjct: 398 ---YMFEAREFLRKKLIGKKVNVTVD-------YIRPASPATDTVPAFSERTC------- 440
Query: 122 KAIATMAHCSI-QTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEG 180
A T+ +I + V KG ++ DDD
Sbjct: 441 -ATVTIGGINIAEALVSKGLATVIRYR--------------------QDDD--------- 470
Query: 181 WVSLRSKNPD-LLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPEPKQVLDKFGKRI--V 237
RS + D LL E +A + GKG +S ++ P V I+ D + + F +R
Sbjct: 471 ---QRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRS 527
Query: 238 KAVIDNINPGLTMRAFLLPDHYYVAFCLSGIK----------IVRENEEYGREVRQYLEE 287
+AV++ + G ++ +L + + F L+GI+ +V+E E + E + +E
Sbjct: 528 EAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKE 587
Query: 288 RILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKL 347
+LQR+V V +ES+ N I L +G +++ LLV + + + K L
Sbjct: 588 LVLQREVEVEVESMDKAGNFI--GWLHIDGANLSV--LLVEHALSKVHFTAERSAYYKSL 643
Query: 348 REAEKLAQSERKRRWTNYTPKKPPKERAAVVLE 380
AE+ A+ ++++ W +Y ++ P E VLE
Sbjct: 644 LSAEEAAKQKKEKVWAHY--EEQPVEELMPVLE 674
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 15/142 (10%)
Query: 11 RKGLVKFVNSGDSITLITDPKLRT--EVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYA 68
++G+VK V SG +I + P+ E +N++A +ARR P + DEP+A
Sbjct: 20 QRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWA 79
Query: 69 WEAREFLRKLIIGKIVWYTAEK--PEGNRYYGTLFY------PNQDDDITKRSCGIRRKS 120
+ AREFLRK +IGK V +T E P+G R YG ++ N + + RR+
Sbjct: 80 FPAREFLRKKLIGKEVCFTIENKTPQG-REYGMIYLGKDTNGENIAESLVAEGLATRREG 138
Query: 121 RKA----IATMAHCSIQTKVRK 138
+A +A C Q K K
Sbjct: 139 MRANNPEQNRLAECEEQAKASK 160
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 15/95 (15%)
Query: 367 PKKPPKERAAVVLEIINGDGLVIK---YVGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKA 423
P P +R V + +++G ++++ G E ++ LS+I+ G +A
Sbjct: 14 PAVPTVQRGIVKM-VLSGCAIIVRGQPRGGPPPERQINLSNIR---------AGNLARRA 63
Query: 424 PVVR--SKPLYDVPWLYEAREFLRTRLIGKKVMVS 456
V + +K D PW + AREFLR +LIGK+V +
Sbjct: 64 AVAQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFT 98
>sp|Q78PY7|SND1_MOUSE Staphylococcal nuclease domain-containing protein 1 OS=Mus musculus
GN=Snd1 PE=1 SV=1
Length = 910
Score = 176 bits (445), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 187/340 (55%), Gaps = 45/340 (13%)
Query: 170 DDITKLLISEGWVS----LRSKNPD---LLDLENKAKEAGKGKYSTRDEPSAHVRSINWD 222
++I + L++EG + +R+ NP+ L + E +AK + KG +S + S +R + +
Sbjct: 121 ENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKASKKGMWSEGN-GSHTIRDLKYT 179
Query: 223 PE-PKQVLDKFGKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIK---IVREN---- 274
E P+ +D ++ V A+I+++ G +RA LLP H+ V LSGIK RE
Sbjct: 180 IENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPGHHLVTVMLSGIKCPTFRRETDGSE 239
Query: 275 --EEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFA 332
E + E + + E R+LQRDV +I+ES N+ + T++H NI ELL++EGFA
Sbjct: 240 TPEPFAAEAKFFTESRLLQRDVQIILESCHNQN---LLGTILHPNG--NITELLLKEGFA 294
Query: 333 SCNTLLQGVYDE--KKLREAEKLAQSERKRRWTNYTP-----KKPPKERAAVVLEIINGD 385
C VY +KLR AE+ A+ R R W +Y P + K+ A V++++N D
Sbjct: 295 RCVDWSIAVYTRGAEKLRAAERFAKERRLRIWRDYVPPTANLDQKDKQFVAKVMQVLNAD 354
Query: 386 GLVIKY-VGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKAPVVRSKPLYDVPWLYEAREFL 444
+V+K GD K + LSSI+PPR +G + + +PLYD+P+++EAREFL
Sbjct: 355 AIVVKLNSGDYK--TIHLSSIRPPRLEGDNIQDKNK------KLRPLYDIPYMFEAREFL 406
Query: 445 RTRLIGKKVMVSEDY------AQDARDKFPEKKCVSVFVG 478
R +LIGKKV V+ DY A + F E+ C +V +G
Sbjct: 407 RKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIG 446
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 164/393 (41%), Gaps = 88/393 (22%)
Query: 8 VIYRKGLVKFVNSGDSITL----ITDPKLRTEVTFLFTNVQAPKIARRPRADGPPSAQPE 63
V+ +V +NSGD T+ I P+L + N+Q RP D P
Sbjct: 350 VLNADAIVVKLNSGDYKTIHLSSIRPPRLEGD------NIQDKNKKLRPLYDIP------ 397
Query: 64 DEPYAWEAREFLRKLIIGKIVWYTAE--KPEGNRYYGTLFYPNQDDDITKRSCGIRRKSR 121
Y +EAREFLRK +IGK V T + +P T P ++R+C
Sbjct: 398 ---YMFEAREFLRKKLIGKKVNVTVDYIRPASP---ATETVPA----FSERTC------- 440
Query: 122 KAIATMAHCSI-QTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEG 180
A T+ +I + V KG ++ DDD
Sbjct: 441 -ATVTIGGINIAEALVSKGLATVIRYR--------------------QDDD--------- 470
Query: 181 WVSLRSKNPD-LLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPEPKQVLDKFGKRI--V 237
RS + D LL E +A + GKG +S ++ P V I+ D + + F +R
Sbjct: 471 ---QRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRS 527
Query: 238 KAVIDNINPGLTMRAFLLPDHYYVAFCLSGIK----------IVRENEEYGREVRQYLEE 287
+AV++ + G ++ +L + + F L+GI+ +V+E E + E + +E
Sbjct: 528 EAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKE 587
Query: 288 RILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKL 347
+LQR+V V +ES+ N I L +G +++ LLV + + + + K L
Sbjct: 588 LVLQREVEVEVESMDKAGNFI--GWLHMDGANLSV--LLVEQALSKVHFTAERSAYYKPL 643
Query: 348 REAEKLAQSERKRRWTNYTPKKPPKERAAVVLE 380
AE+ A+ +++ W +Y + P E VLE
Sbjct: 644 LSAEEAAKQRKEKVWAHYEER--PVEEVMPVLE 674
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 15/142 (10%)
Query: 11 RKGLVKFVNSGDSITLITDPKLRT--EVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYA 68
++G+VK V SG +I + P+ E +N++A +ARR A P DEP+A
Sbjct: 20 QRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDGKDTPDEPWA 79
Query: 69 WEAREFLRKLIIGKIVWYTAEK--PEGNRYYGTLFY------PNQDDDITKRSCGIRRKS 120
+ AREFLRK +IGK V +T E P+G R YG ++ N + + RR+
Sbjct: 80 FPAREFLRKKLIGKEVCFTIENKTPQG-REYGMIYLGKDTNGENIAESLVAEGLATRREG 138
Query: 121 RKA----IATMAHCSIQTKVRK 138
+A ++ C Q K K
Sbjct: 139 MRANNPEQNRLSECEEQAKASK 160
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 371 PKERAAVVLEIINGDGLVIK---YVGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKAPVVR 427
P + +V +++G ++++ G E ++ LS+I+ AA +GK
Sbjct: 17 PTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDGK----- 71
Query: 428 SKPLYDVPWLYEAREFLRTRLIGKKV 453
P D PW + AREFLR +LIGK+V
Sbjct: 72 DTP--DEPWAFPAREFLRKKLIGKEV 95
>sp|Q7KZF4|SND1_HUMAN Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens
GN=SND1 PE=1 SV=1
Length = 910
Score = 175 bits (444), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 187/340 (55%), Gaps = 45/340 (13%)
Query: 170 DDITKLLISEGWVS----LRSKNPD---LLDLENKAKEAGKGKYSTRDEPSAHVRSINWD 222
++I + L++EG + +R+ NP+ L + E +AK A KG +S + S +R + +
Sbjct: 121 ENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAKKGMWSEGN-GSHTIRDLKYT 179
Query: 223 PE-PKQVLDKFGKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIK---IVREN---- 274
E P+ +D ++ V A+I+++ G +RA LLPD+Y V LSGIK RE
Sbjct: 180 IENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREADGSE 239
Query: 275 --EEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFA 332
E + E + + E R+LQRDV +I+ES N+ + T++H NI ELL++EGFA
Sbjct: 240 TPEPFAAEAKFFTESRLLQRDVQIILESCHNQN---ILGTILHPNG--NITELLLKEGFA 294
Query: 333 SCNTLLQGVYDE--KKLREAEKLAQSERKRRWTNYTP-----KKPPKERAAVVLEIINGD 385
C VY +KLR AE+ A+ R R W +Y + K+ A V++++N D
Sbjct: 295 RCVDWSIAVYTRGAEKLRAAERFAKERRLRIWRDYVAPTANLDQKDKQFVAKVMQVLNAD 354
Query: 386 GLVIKY-VGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKAPVVRSKPLYDVPWLYEAREFL 444
+V+K GD K + LSSI+PPR +G + + +PLYD+P+++EAREFL
Sbjct: 355 AIVVKLNSGDYK--TIHLSSIRPPRLEGENTQDKNK------KLRPLYDIPYMFEAREFL 406
Query: 445 RTRLIGKKVMVSEDY------AQDARDKFPEKKCVSVFVG 478
R +LIGKKV V+ DY A + F E+ C +V +G
Sbjct: 407 RKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIG 446
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 164/393 (41%), Gaps = 88/393 (22%)
Query: 8 VIYRKGLVKFVNSGDSITL----ITDPKLRTEVTFLFTNVQAPKIARRPRADGPPSAQPE 63
V+ +V +NSGD T+ I P+L E N Q RP D P
Sbjct: 350 VLNADAIVVKLNSGDYKTIHLSSIRPPRLEGE------NTQDKNKKLRPLYDIP------ 397
Query: 64 DEPYAWEAREFLRKLIIGKIVWYTAE--KPEGNRYYGTLFYPNQDDDITKRSCGIRRKSR 121
Y +EAREFLRK +IGK V T + +P T P ++R+C
Sbjct: 398 ---YMFEAREFLRKKLIGKKVNVTVDYIRPASP---ATETVPA----FSERTC------- 440
Query: 122 KAIATMAHCSI-QTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEG 180
A T+ +I + V KG ++ DDD
Sbjct: 441 -ATVTIGGINIAEALVSKGLATVIRYR--------------------QDDD--------- 470
Query: 181 WVSLRSKNPD-LLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPEPKQVLDKFGKRI--V 237
RS + D LL E +A + GKG +S ++ P V I+ D + + F +R
Sbjct: 471 ---QRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRS 527
Query: 238 KAVIDNINPGLTMRAFLLPDHYYVAFCLSGIK----------IVRENEEYGREVRQYLEE 287
+AV++ + G ++ +L + + F L+GI+ +V+E E + E + +E
Sbjct: 528 EAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKE 587
Query: 288 RILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKL 347
+LQR+V V +ES+ N I L +G +++ LLV + + + K L
Sbjct: 588 LVLQREVEVEVESMDKAGNFI--GWLHIDGANLSV--LLVEHALSKVHFTAERSSYYKSL 643
Query: 348 REAEKLAQSERKRRWTNYTPKKPPKERAAVVLE 380
AE+ A+ ++++ W +Y ++ P E VLE
Sbjct: 644 LSAEEAAKQKKEKVWAHY--EEQPVEEVMPVLE 674
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 11 RKGLVKFVNSGDSITLITDPKLRT--EVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYA 68
++G++K V SG +I + P+ E +N++A +ARR A P + DEP+A
Sbjct: 20 QRGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWA 79
Query: 69 WEAREFLRKLIIGKIVWYTAEK--PEGNRYYGTLF 101
+ AREFLRK +IGK V +T E P+G R YG ++
Sbjct: 80 FPAREFLRKKLIGKEVCFTIENKTPQG-REYGMIY 113
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 367 PKKPPKERAAVVLEIINGDGLVIK---YVGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKA 423
P P +R + + +++G ++++ G E ++ LS+I+ AA
Sbjct: 14 PAVPTVQRGIIKM-VLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAA-----TQ 67
Query: 424 PVVRSKPLYDVPWLYEAREFLRTRLIGKKV 453
P + P D PW + AREFLR +LIGK+V
Sbjct: 68 PDAKDTP--DEPWAFPAREFLRKKLIGKEV 95
>sp|Q5REU4|SND1_PONAB Staphylococcal nuclease domain-containing protein 1 OS=Pongo abelii
GN=SND1 PE=2 SV=1
Length = 910
Score = 175 bits (444), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 187/340 (55%), Gaps = 45/340 (13%)
Query: 170 DDITKLLISEGWVS----LRSKNPD---LLDLENKAKEAGKGKYSTRDEPSAHVRSINWD 222
++I + L++EG + +R+ NP+ L + E +AK A KG +S + S +R + +
Sbjct: 121 ENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAKKGMWSEGN-GSHTIRDLKYT 179
Query: 223 PE-PKQVLDKFGKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIK---IVREN---- 274
E P+ +D ++ V A+I+++ G +RA LLPD+Y V LSGIK RE
Sbjct: 180 IENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREADGSE 239
Query: 275 --EEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFA 332
E + E + + E R+LQRDV +I+ES N+ + T++H NI ELL++EGFA
Sbjct: 240 TPEPFAAEAKFFTESRLLQRDVQIILESCHNQN---ILGTILHPNG--NITELLLKEGFA 294
Query: 333 SCNTLLQGVYDE--KKLREAEKLAQSERKRRWTNYTP-----KKPPKERAAVVLEIINGD 385
C VY +KLR AE+ A+ R R W +Y + K+ A V++++N D
Sbjct: 295 RCVDWSIAVYTRGAEKLRAAERFAKERRLRIWRDYVAPTANLDQKDKQFVAKVMQVLNAD 354
Query: 386 GLVIKY-VGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKAPVVRSKPLYDVPWLYEAREFL 444
+V+K GD K + LSSI+PPR +G + + +PLYD+P+++EAREFL
Sbjct: 355 AIVVKLNSGDYK--TIHLSSIRPPRLEGENTQDKNK------KLRPLYDIPYMFEAREFL 406
Query: 445 RTRLIGKKVMVSEDY------AQDARDKFPEKKCVSVFVG 478
R +LIGKKV V+ DY A + F E+ C +V +G
Sbjct: 407 RKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIG 446
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 164/393 (41%), Gaps = 88/393 (22%)
Query: 8 VIYRKGLVKFVNSGDSITL----ITDPKLRTEVTFLFTNVQAPKIARRPRADGPPSAQPE 63
V+ +V +NSGD T+ I P+L E N Q RP D P
Sbjct: 350 VLNADAIVVKLNSGDYKTIHLSSIRPPRLEGE------NTQDKNKKLRPLYDIP------ 397
Query: 64 DEPYAWEAREFLRKLIIGKIVWYTAE--KPEGNRYYGTLFYPNQDDDITKRSCGIRRKSR 121
Y +EAREFLRK +IGK V T + +P T P ++R+C
Sbjct: 398 ---YMFEAREFLRKKLIGKKVNVTVDYIRPASP---ATETVPA----FSERTC------- 440
Query: 122 KAIATMAHCSI-QTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEG 180
A T+ +I + V KG ++ DDD
Sbjct: 441 -ATVTIGGINIAEALVSKGLATVIRYR--------------------QDDD--------- 470
Query: 181 WVSLRSKNPD-LLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPEPKQVLDKFGKRI--V 237
RS + D LL E +A + GKG +S ++ P V I+ D + + F +R
Sbjct: 471 ---QRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRS 527
Query: 238 KAVIDNINPGLTMRAFLLPDHYYVAFCLSGIK----------IVRENEEYGREVRQYLEE 287
+AV++ + G ++ +L + + F L+GI+ +V+E E + E + +E
Sbjct: 528 EAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKE 587
Query: 288 RILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKL 347
+LQR+V V +ES+ N I L +G +++ LLV + + + K L
Sbjct: 588 LVLQREVEVEVESMDKAGNFI--GWLHIDGANLSV--LLVEHALSKVHFTAERSSYYKSL 643
Query: 348 REAEKLAQSERKRRWTNYTPKKPPKERAAVVLE 380
AE+ A+ ++++ W +Y ++ P E VLE
Sbjct: 644 LSAEEAAKQKKEKVWAHY--EEQPVEEVMPVLE 674
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 11 RKGLVKFVNSGDSITLITDPKLRT--EVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYA 68
++G+VK V SG +I + P+ E +N++A +ARR A P + DEP+A
Sbjct: 20 QRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWA 79
Query: 69 WEAREFLRKLIIGKIVWYTAEK--PEGNRYYGTLF 101
+ AREFLRK +IGK V +T E P+G R YG ++
Sbjct: 80 FPAREFLRKKLIGKEVCFTIENKTPQG-REYGMIY 113
Score = 35.4 bits (80), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 367 PKKPPKERAAVVLEIINGDGLVIK---YVGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKA 423
P P +R V + +++G ++++ G E ++ LS+I+ AA
Sbjct: 14 PAVPTVQRGIVKM-VLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAA-----TQ 67
Query: 424 PVVRSKPLYDVPWLYEAREFLRTRLIGKKVMVS 456
P + P D PW + AREFLR +LIGK+V +
Sbjct: 68 PDAKDTP--DEPWAFPAREFLRKKLIGKEVCFT 98
>sp|Q9Y7U7|SND1_SCHPO Staphylococcal nuclease domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snd1 PE=1 SV=1
Length = 878
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 140/334 (41%), Gaps = 59/334 (17%)
Query: 171 DITKLLISEGWVSLR---------SKNPDLLDLENKAKEAGKGKYSTRDEPSAHVRSINW 221
D+ + L+ EG LR S+N + LE A + K V +
Sbjct: 93 DLAESLLREGLAKLRPEATRNEGTSENSYFVSLEEAQDHAQQYKLGIWGPSDDVVVTEKA 152
Query: 222 DP-EPKQVLDKFGKRIVKAVIDNINPG--LTMRAFLLP-DHYYVAFCLSGIKIVR----- 272
+P P + L + + +++ I G + +R FL P H V L+G++ R
Sbjct: 153 NPANPAKFLKAHKGKKLNGIVETIRNGDQVRVRLFLSPKQHQLVTISLAGVRCPRSTFTA 212
Query: 273 --------ENEEYGREVRQYLEERILQRDVNVIIESVQNEKNRI-MNATLIHEGQKMNIG 323
E E G E +Q++ R+LQR NV+IE + N + ++H NI
Sbjct: 213 TSPEQTSSEQEPCGDEAKQFVVTRLLQR--NVVIELLDLAPNGVSFLGNVLHPAG--NIA 268
Query: 324 ELLVREGF---ASCNTLLQGVYDEKKLREAEKLAQSERKRRWTNYTPKKPP------KER 374
L+ G A + G + LR E+ A+ R W N + P K+
Sbjct: 269 TFLLSSGLGRVADNHISALGPETMQSLRTIERKAKISRLGIWKNISVSIPDINSLSLKDY 328
Query: 375 AAVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKAPVVRSKPLYDV 434
+AVV +I+ D L ++ + E ++ LSSI+ PRP +
Sbjct: 329 SAVVSRVISTDTLEVRK-DNGVECRIQLSSIRHPRPSNEK------------------EA 369
Query: 435 PWLYEAREFLRTRLIGKKVMVSEDYAQDARDKFP 468
P+ EAREFLR ++IGK+V VS D+ + ++ P
Sbjct: 370 PYQLEAREFLRKKIIGKRVQVSLDFIRPGQNDLP 403
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 130/337 (38%), Gaps = 70/337 (20%)
Query: 50 RRPRADGPPSAQPEDEPYAWEAREFLRKLIIGKIVWYTAEKPEGNRYYGTLFYPNQDDDI 109
R PR PS + E PY EAREFLRK IIGK V + + P Q+D
Sbjct: 359 RHPR----PSNEKE-APYQLEAREFLRKKIIGKRVQVSLD----------FIRPGQNDLP 403
Query: 110 TKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTD 169
+C ++ +A M V+ G ++ +R D
Sbjct: 404 AINNCTVKLSDGTNVALMV-------VKSGYATV-----------------IRYRMDSVD 439
Query: 170 DDITKLLISEGWVSLRSKNPD-LLDLENKAKEAGKGKYSTRDEPSAH-VRSINWDPEPKQ 227
RS D L++ E A+E KG +S + + V + +Q
Sbjct: 440 ---------------RSPIYDFLIEAEKAAQEGRKGMWSGKKPAYENIVNASESSLRSRQ 484
Query: 228 VLDKFGK-RIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGI---KIVRENEEYGR---E 280
L + R + +I+N+ G R F ++ Y F +GI + R ++E G E
Sbjct: 485 YLSSLQRTRKLSVIIENVISGSRFRCFCPKENCYFMFACAGIRTPRTARNDQEKGEPFAE 544
Query: 281 VRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLL-Q 339
L + +LQ D V I SV N + + + H+ N L+ +G A C Q
Sbjct: 545 ESLSLAKSLLQHDAQVEILSVDNNGCFLGDIYVNHD---TNFALKLLSQGLAWCQGYASQ 601
Query: 340 GVYDEKKLREAEKLAQSERKRRWTNYTPKKPPKERAA 376
+ + E A+ ++ W +Y PP+++AA
Sbjct: 602 SNVQYSQYHDTEAAAKEQKVGMWHDYV---PPEKKAA 635
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 10 YRKGLVKFVNSGDSITLIT--DPKLRTEVTFLFTNVQAPKIARRPRADGPPSAQPEDEPY 67
Y ++K+ SGDS ++ + K TE F V+ P+ R DEP+
Sbjct: 4 YVSSMIKYAQSGDSFNILIKDNAKKITEKQFSLAYVECPRFRREG-----------DEPF 52
Query: 68 AWEAREFLRKLIIGK 82
A+EA+EF R+L++G+
Sbjct: 53 AFEAQEFSRRLVVGR 67
>sp|B2VE90|SYH_ERWT9 Histidine--tRNA ligase OS=Erwinia tasmaniensis (strain DSM 17950 /
Et1/99) GN=hisS PE=3 SV=1
Length = 425
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 20/167 (11%)
Query: 84 VWYTA-----EKPEGNRY-----YGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQ 133
+WY E+P+ RY G + Q DI + + KA+ H S++
Sbjct: 105 LWYIGPMFRYERPQKGRYRQFHQIGAEVFGLQGPDIDAELIMMTARWWKALGIADHVSLE 164
Query: 134 TKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEGWVSLRSKNPDLLD 193
SI S A++ Y + FL D+D + + S L SKNPD+
Sbjct: 165 LN------SIGSLEARAN-YRNALVAFLEQHIEVLDEDCKRRMYSNPLRVLDSKNPDIQA 217
Query: 194 LENKAKEAGKGKYSTRDEPSAHVRSINWDPEPKQVLDKFGKRIVKAV 240
L N A G DE H + + + + +R+V+ +
Sbjct: 218 LLNDAPALGD---YLDDESREHFAGLCHQLDAAGIAYRVNQRLVRGL 261
>sp|B1VKD7|RK2_CRYJA 50S ribosomal protein L2, chloroplastic OS=Cryptomeria japonica
GN=rpl2 PE=3 SV=1
Length = 277
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 417 GGGEGKAPVVRSKPLYDVPWLYEA 440
GGGEG+AP+ R KPL PW Y A
Sbjct: 235 GGGEGRAPIGRKKPL--TPWGYSA 256
>sp|A2T375|RK2_ANGEV 50S ribosomal protein L2, chloroplastic OS=Angiopteris evecta
GN=rpl2 PE=3 SV=1
Length = 277
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 417 GGGEGKAPVVRSKPLYDVPWLYEA 440
GGGEG+AP+ R KPL PW Y A
Sbjct: 233 GGGEGRAPIGREKPL--TPWGYTA 254
>sp|P27603|PHEA_PSEST P-protein OS=Pseudomonas stutzeri GN=pheA PE=4 SV=2
Length = 365
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 158 FLFLRT-EFPPTDDDITKLLIS---------EGWVSLRSKNPDLLDLENKAKEAGKGKYS 207
FL + + E PPT DD T +++S E + S DL +E + +GK Y
Sbjct: 267 FLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELLMPFHSNGIDLTRIETRPSRSGKWTYV 326
Query: 208 TRDEPSAHVRSINWDPEPKQVLDKFGKRIV 237
+ H + DP K VL+K G V
Sbjct: 327 FFIDCMGH----HQDPLIKNVLEKIGHEAV 352
>sp|Q2URN2|LCL3_ASPOR Probable endonuclease lcl3 OS=Aspergillus oryzae (strain ATCC 42149
/ RIB 40) GN=lcl3 PE=3 SV=1
Length = 277
Score = 32.3 bits (72), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 272 RENEEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEG-------QKMNIGE 324
R + Y RE ++L +L R V V++ Q++ R++ + + ++ ++
Sbjct: 145 RPEQPYAREAHEWLTSYVLNRRVRVLVHR-QDQYQRVVASAYVRRAIDFPIPFRRRDVSY 203
Query: 325 LLVREGFAS-----CNTLLQGVYDEKKLREAEKLAQSERKRRWTNY 365
++ G A+ + G E+K REAE +A+ + W Y
Sbjct: 204 EMLTRGLATVYEAKAGSEFGGPELERKYREAESIAKRKGTGLWKGY 249
>sp|B8MY73|LCL3_ASPFN Probable endonuclease lcl3 OS=Aspergillus flavus (strain ATCC
200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)
GN=lcl3 PE=3 SV=1
Length = 277
Score = 32.3 bits (72), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 272 RENEEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEG-------QKMNIGE 324
R + Y RE ++L +L R V V++ Q++ R++ + + ++ ++
Sbjct: 145 RPEQPYAREAHEWLTSYVLNRRVRVLVHR-QDQYQRVVASAYVRRAIDFPIPFRRRDVSY 203
Query: 325 LLVREGFAS-----CNTLLQGVYDEKKLREAEKLAQSERKRRWTNY 365
++ G A+ + G E+K REAE +A+ + W Y
Sbjct: 204 EMLTRGLATVYEAKAGSEFGGPELERKYREAESIAKRKGTGLWKGY 249
>sp|P11534|RK2_WHEAT 50S ribosomal protein L2, chloroplastic OS=Triticum aestivum
GN=rpl2-A PE=3 SV=2
Length = 273
Score = 32.0 bits (71), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 417 GGGEGKAPVVRSKPLYDVPWLYEA 440
GGGEGKAP+ R KP PW Y A
Sbjct: 231 GGGEGKAPIGRKKP--TTPWGYPA 252
>sp|O13821|VPS27_SCHPO Vacuolar protein sorting-associated protein 27
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sst4 PE=3 SV=1
Length = 610
Score = 32.0 bits (71), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 193 DLENKAKE---AGKGKYSTRDEPSAHVRSINWDPEPKQVLDKFGKRIVKAVIDNINPGLT 249
D+E E AG + S E S +RS + DP KF RI+K+ ID+ NP +
Sbjct: 14 DIEKATSETLPAGSEEISLYLEISDQIRSKSVDP-------KFAMRILKSRIDHSNPNVQ 66
Query: 250 MRAFLLPD 257
+ A L D
Sbjct: 67 IMALKLTD 74
>sp|P31163|RK2_PEA 50S ribosomal protein L2, chloroplastic OS=Pisum sativum GN=rpl2
PE=3 SV=1
Length = 273
Score = 32.0 bits (71), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 10/46 (21%)
Query: 417 GGGEGKAPVVRSKPLYDVPWLYEAREFLRTRLIGKKVMVSEDYAQD 462
GGGEG+AP+ R KP PW Y A +G++ S Y+ +
Sbjct: 230 GGGEGRAPIGRKKP--STPWGYPA--------LGRRTRKSNKYSDN 265
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,348,798
Number of Sequences: 539616
Number of extensions: 8423651
Number of successful extensions: 24127
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 24018
Number of HSP's gapped (non-prelim): 91
length of query: 480
length of database: 191,569,459
effective HSP length: 121
effective length of query: 359
effective length of database: 126,275,923
effective search space: 45333056357
effective search space used: 45333056357
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)