Query psy16181
Match_columns 480
No_of_seqs 289 out of 1676
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 22:50:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2039|consensus 100.0 1.1E-38 2.4E-43 359.6 20.5 377 9-478 3-412 (875)
2 smart00318 SNc Staphylococcal 99.9 2.7E-25 5.7E-30 199.3 17.2 125 236-364 2-138 (138)
3 cd00175 SNc Staphylococcal nuc 99.9 8.4E-25 1.8E-29 193.7 14.7 117 243-364 1-129 (129)
4 smart00318 SNc Staphylococcal 99.9 3.1E-22 6.7E-27 179.5 17.2 127 10-207 2-137 (138)
5 PRK06518 hypothetical protein; 99.9 4.6E-22 1E-26 187.5 15.7 127 232-364 19-156 (177)
6 cd00175 SNc Staphylococcal nuc 99.9 2.4E-21 5.1E-26 171.7 15.1 121 17-208 1-129 (129)
7 KOG2039|consensus 99.9 2.7E-21 5.8E-26 219.1 19.3 377 10-456 320-794 (875)
8 PRK06518 hypothetical protein; 99.8 4E-20 8.7E-25 174.3 16.8 129 9-209 22-157 (177)
9 PF00565 SNase: Staphylococcal 99.8 7.1E-21 1.5E-25 162.5 10.6 101 262-364 1-108 (108)
10 COG1525 Micrococcal nuclease ( 99.8 5.6E-19 1.2E-23 167.8 14.2 122 237-365 42-172 (192)
11 PF00565 SNase: Staphylococcal 99.7 6.1E-17 1.3E-21 138.2 9.6 98 37-208 1-108 (108)
12 COG1525 Micrococcal nuclease ( 99.7 2.2E-16 4.7E-21 150.1 14.3 124 12-209 43-172 (192)
13 COG5618 Predicted periplasmic 65.0 55 0.0012 31.5 9.3 88 372-467 91-194 (206)
14 smart00743 Agenet Tudor-like d 63.4 15 0.00033 28.1 4.6 38 373-410 19-58 (61)
15 cd04508 TUDOR Tudor domains ar 44.9 38 0.00082 24.3 3.9 36 372-407 13-48 (48)
16 PRK12442 translation initiatio 41.6 62 0.0013 27.7 5.1 31 373-404 8-38 (87)
17 smart00333 TUDOR Tudor domain. 38.2 50 0.0011 24.6 3.8 38 372-409 17-54 (57)
18 COG0361 InfA Translation initi 37.4 79 0.0017 26.3 5.0 32 372-404 7-38 (75)
19 TIGR00008 infA translation ini 35.7 95 0.0021 25.3 5.1 31 373-404 6-36 (68)
20 TIGR00008 infA translation ini 26.5 1.7E+02 0.0038 23.8 5.2 53 236-303 6-60 (68)
21 PF01176 eIF-1a: Translation i 25.2 2E+02 0.0044 22.6 5.4 31 373-404 4-34 (65)
22 PRK12442 translation initiatio 25.1 1.8E+02 0.0039 24.9 5.2 54 236-303 8-62 (87)
23 PF14468 DUF4427: Protein of u 25.0 1.2E+02 0.0026 27.7 4.4 50 306-357 35-90 (132)
24 smart00743 Agenet Tudor-like d 22.0 1.5E+02 0.0032 22.5 3.9 38 8-45 17-55 (61)
No 1
>KOG2039|consensus
Probab=100.00 E-value=1.1e-38 Score=359.56 Aligned_cols=377 Identities=34% Similarity=0.549 Sum_probs=331.9
Q ss_pred ceeeEEEEEEeeCCEEEEEeCCCC--CeeEEEEEeeecCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEE
Q psy16181 9 IYRKGLVKFVNSGDSITLITDPKL--RTEVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYAWEAREFLRKLIIGKIVWY 86 (480)
Q Consensus 9 ~~~~g~V~~V~sGDti~v~~~~~~--~~e~~v~l~~I~aP~~~~~~~~~~~~~~~~~~ep~a~eAre~Lr~~~iGk~V~~ 86 (480)
.+..|.|+.|.|||.+.|+..+.. +++..++|+++.+|++.+++. + .|+||+|++++|+|+.++||.|.|
T Consensus 3 ~~~~~~v~~v~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g------~d~p~~~~~~~~~~~~~~~k~~~v 74 (875)
T KOG2039|consen 3 QRLVGYVKAVLSGDAFVIRGSPRAGPPPEFQINLSNVKAPNEARRDK--G------VDEPFAWESREFLRKSEIGKEVAV 74 (875)
T ss_pred eEEeeeEEEEeccCccEEEcccccCCCCCceEEEeecCCccccccCC--C------CCCCcChhhHHHHHHHhccceeee
Confidence 356799999999999999975433 679999999999999998752 1 289999999999999999999999
Q ss_pred EEee-c-cCCcEEEEEEccCCCCccccccccccccchhhhhhhcccccccccccCcccccccCcccchhhhhhccccccC
Q psy16181 87 TAEK-P-EGNRYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTE 164 (480)
Q Consensus 87 ~~~~-~-~~~r~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (480)
+.++ . ..+|.+|.++++
T Consensus 75 ~~~~~~~~~~~e~~~~~~~------------------------------------------------------------- 93 (875)
T KOG2039|consen 75 TRDQMSANNGREVGFIYLG------------------------------------------------------------- 93 (875)
T ss_pred EEeeeccccccccceeecC-------------------------------------------------------------
Confidence 9999 3 467999999983
Q ss_pred CCCCcccHHHHHHhcCCeEeEccc-------chHHHHHHHHHHhCCCCCCCCCCCCccccccCCCCC-chhhhhhhcCcE
Q psy16181 165 FPPTDDDITKLLISEGWVSLRSKN-------PDLLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPE-PKQVLDKFGKRI 236 (480)
Q Consensus 165 ~~~~~~nv~~~lv~~G~a~v~~~~-------~~l~~~E~~Ak~~~~Giws~~~~~~~~v~~i~~~~~-~~~~l~~~k~k~ 236 (480)
+.++++.|+.+||+++++.. ..+.+.|..|++.++|+|+.. .+.++++.++.. ++.++..+.+++
T Consensus 94 ----~~~~a~~lv~~g~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~g~w~~~---~~~~~~~~~~~~~p~~~~~~~~~~~ 166 (875)
T KOG2039|consen 94 ----DENSAESLVKEGLLDVRDEGVRNSSYFKTLDEVEVQAKQSGRGIWSKL---DHFIRNLKDSALNPAELVDAVGGKP 166 (875)
T ss_pred ----cchhHHHHHhccCCcccccccccchhhhhhhhhhhhhhhhcccccccc---ccceeeccccccccHHHHHhcCCce
Confidence 36899999999999998652 268899999999999999933 456788888876 899999999999
Q ss_pred EEEEEEEecCCC-eEEEEecCCeEEEEEEEeeeccCCC----------CchhHHHHHHHHHHHhcCCeEEEEEeeeecCC
Q psy16181 237 VKAVIDNINPGL-TMRAFLLPDHYYVAFCLSGIKIVRE----------NEEYGREVRQYLEERILQRDVNVIIESVQNEK 305 (480)
Q Consensus 237 l~aiVe~V~DGd-tlrV~l~~~~~~I~V~LaGIdaPe~----------~ePfg~EAk~fl~~~LLqR~V~V~l~~~d~Dk 305 (480)
+.|+|++|++|+ +.|+++.+.+..++++|+|+.||.. .+||+.+|+.|++.++++|++.+.+++...
T Consensus 167 ~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s~~~~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~-- 244 (875)
T KOG2039|consen 167 VNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPSDGSPSVPDPFADEAKLFSEDRLLQRAVAIPLESEEN-- 244 (875)
T ss_pred eeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCCCCCCCCCCcHHHHHHHhcccchhhhceeeeeccccc--
Confidence 999999999999 6888777778889999999999952 378999999999999999999999999887
Q ss_pred CCeEEEEEEeCCCCCcHHHHHHhhCCeeeeeecCCCCCH---HHHHHHHHHHHHccccc-CCCCCCCCCC------ceee
Q psy16181 306 NRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDE---KKLREAEKLAQSERKRR-WTNYTPKKPP------KERA 375 (480)
Q Consensus 306 ~gr~lg~V~~~~~~~nIa~~LL~~GLA~v~~~~~~~~~~---~~l~~AE~~AK~~k~Gl-W~~~~~~~~~------k~~~ 375 (480)
+..++|.++++ +++|++.|+.+|++++++|+...... ..++.+|..++..+..+ |+++.++... +.|.
T Consensus 245 ~~~~~g~v~~~--~~~i~~~~~~~~~~k~v~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~ 322 (875)
T KOG2039|consen 245 YVFFVGDVLYP--DGNIALELLSEGLAKCVDWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFS 322 (875)
T ss_pred ccccccccccc--ccceeeehhccchHHHHHhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeecccccc
Confidence 56789999999 77999999999999999999776654 66999999999999999 9999987653 5788
Q ss_pred EEEEEEEeCCEEEEEEcCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCCCchhHHHHHHHHHHhhcCCEEEE
Q psy16181 376 AVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKAPVVRSKPLYDVPWLYEAREFLRTRLIGKKVMV 455 (480)
Q Consensus 376 g~VveVisgd~l~V~~~~~g~~~rV~Lssir~pr~~~~~~~~g~~~~~~~~~~~~~~~~~~~~eArEfLRk~lIGK~V~v 455 (480)
+.|+++..+|++.+...+ |.+.++++++|+.||.++ +.+..+| +..||+++|+||+|++.||+.|.+
T Consensus 323 ~~v~e~~~~d~~~~~~~s-g~~~~~~~~~i~~pr~~~-----------~~~~~~p-~~~~~q~~a~~~~~~~~i~~~v~~ 389 (875)
T KOG2039|consen 323 GKVVEVLVSDCVLVALDS-GSENKLFLSSIRLPRAGE-----------PGRSLKP-YISPVQLVAREFLRKKLIGKRVIL 389 (875)
T ss_pred ceeeeeeccCceEEecCC-CCceEEEeeeccCccccc-----------cccccCC-ccccHHHHhhhhhhhhccCceeeE
Confidence 899999999999999984 889999999999999321 3466778 889999999999999999999999
Q ss_pred EEeEeecCCCCCCCeeEEEEEeC
Q psy16181 456 SEDYAQDARDKFPEKKCVSVFVG 478 (480)
Q Consensus 456 ~~d~~~~~~~~~~~~~~~tv~~~ 478 (480)
.++|.++.+++++++.|+....+
T Consensus 390 ~~~~~~~~~~~~~~~~c~~~~~~ 412 (875)
T KOG2039|consen 390 QMDVIRPRRENVPTKVCALPLGG 412 (875)
T ss_pred eeecccccccccccccccccCCC
Confidence 99999999999999999887655
No 2
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.93 E-value=2.7e-25 Score=199.33 Aligned_cols=125 Identities=28% Similarity=0.417 Sum_probs=110.0
Q ss_pred EEEEEEEEecCCCeEEEEecCCeEEEEEEEeeeccCCCC----------chhHHHHHHHHHHHhcCCeEEEEEeeeecCC
Q psy16181 236 IVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVREN----------EEYGREVRQYLEERILQRDVNVIIESVQNEK 305 (480)
Q Consensus 236 ~l~aiVe~V~DGdtlrV~l~~~~~~I~V~LaGIdaPe~~----------ePfg~EAk~fl~~~LLqR~V~V~l~~~d~Dk 305 (480)
.+.|+|.+|+|||||+|.+++ +..++|+|+|||||+.. +|||.+|++||+++|++++|.+.+.+.|+
T Consensus 2 ~~~~~V~~V~DGDT~~v~~~~-~~~~~vrL~gIdaPe~~~~~~~~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~~D~-- 78 (138)
T smart00318 2 EIRGVVERVLDGDTIRVRLPK-NKLITIRLSGIDAPETARPNKGDGTTDEPFGEEAKEFLKKLLLGKKVQVEVDSKDR-- 78 (138)
T ss_pred ceeEEEEEEecCCEEEEEeCC-CCEEEEEEEeccCCccCCCCCCCccccCcHHHHHHHHHHHHhCCCEEEEEEeccCC--
Confidence 578999999999999998755 36789999999999853 89999999999999999999999998665
Q ss_pred CCeEEEEEEeCCCCCcHHHHHHhhCCeeeeeecCCCCCH--HHHHHHHHHHHHcccccCCC
Q psy16181 306 NRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDE--KKLREAEKLAQSERKRRWTN 364 (480)
Q Consensus 306 ~gr~lg~V~~~~~~~nIa~~LL~~GLA~v~~~~~~~~~~--~~l~~AE~~AK~~k~GlW~~ 364 (480)
|||++|+|++.+ +.||+++||++|||+++....+.... ..|.+||++||++++|||++
T Consensus 79 ~gr~~a~v~~~~-~~~l~~~Lv~~G~A~~~~~~~~~~~~~~~~l~~ae~~Ar~~~~GlW~~ 138 (138)
T smart00318 79 YGRFLGTVYLNG-GNNIAEELVKEGLAKVYRYADKDEYRVYDELLEAEEAAKKARKGLWSD 138 (138)
T ss_pred CCCEEEEEEECC-CCcHHHHHHhcCCEEEEEecCccccHhHHHHHHHHHHHHHhCcCCCCC
Confidence 999999999973 34699999999999999876554433 79999999999999999983
No 3
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.92 E-value=8.4e-25 Score=193.73 Aligned_cols=117 Identities=29% Similarity=0.419 Sum_probs=104.5
Q ss_pred EecCCCeEEEEecCCeEEEEEEEeeeccCCC----------CchhHHHHHHHHHHHhcCCeEEEEEeeeecCCCCeEEEE
Q psy16181 243 NINPGLTMRAFLLPDHYYVAFCLSGIKIVRE----------NEEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNAT 312 (480)
Q Consensus 243 ~V~DGdtlrV~l~~~~~~I~V~LaGIdaPe~----------~ePfg~EAk~fl~~~LLqR~V~V~l~~~d~Dk~gr~lg~ 312 (480)
+|.|||||+|..++. ..++|+|+||+||+. .+|||.+|++|++++|++++|.|.+.+.|. |||++|+
T Consensus 1 rV~dGDt~~v~~~~~-~~~~vrL~gId~Pe~~~~~~~~~~~~~~~g~~A~~~l~~~l~~~~V~i~~~~~d~--~gr~la~ 77 (129)
T cd00175 1 RVIDGDTIRVRLPPG-PLITVRLSGIDAPETARPNKGKSETDEPFGEEAKEFLKKLLLGKKVQVEVDSKDR--YGRTLGT 77 (129)
T ss_pred CeecCcEEEEEeCCC-CEEEEEEEeecCccccCCccCCCCCCCchHHHHHHHHHHHhCCCEEEEEEccCCC--CCCEEEE
Confidence 589999999987654 678999999999996 789999999999999999999999998655 9999999
Q ss_pred EEeCCCC-CcHHHHHHhhCCeeeeeecCCCCCH-HHHHHHHHHHHHcccccCCC
Q psy16181 313 LIHEGQK-MNIGELLVREGFASCNTLLQGVYDE-KKLREAEKLAQSERKRRWTN 364 (480)
Q Consensus 313 V~~~~~~-~nIa~~LL~~GLA~v~~~~~~~~~~-~~l~~AE~~AK~~k~GlW~~ 364 (480)
|++. + .||+++||++|||+++......... ..|..||++||++++|||++
T Consensus 78 v~~~--~~~~v~~~Lv~~G~A~~~~~~~~~~~~~~~l~~ae~~Ak~~k~GiW~~ 129 (129)
T cd00175 78 VYLN--GGENIAEELVKEGLARVYRYYPDDSEYYDELLEAEEAAKKARKGLWSD 129 (129)
T ss_pred EEeC--CCCcHHHHHHhcCCEEEEEECCCCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 9998 5 7999999999999999876654223 89999999999999999974
No 4
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.89 E-value=3.1e-22 Score=179.48 Aligned_cols=127 Identities=32% Similarity=0.524 Sum_probs=108.0
Q ss_pred eeeEEEEEEeeCCEEEEEeCCCCCeeEEEEEeeecCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEEEe
Q psy16181 10 YRKGLVKFVNSGDSITLITDPKLRTEVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYAWEAREFLRKLIIGKIVWYTAE 89 (480)
Q Consensus 10 ~~~g~V~~V~sGDti~v~~~~~~~~e~~v~l~~I~aP~~~~~~~~~~~~~~~~~~ep~a~eAre~Lr~~~iGk~V~~~~~ 89 (480)
.+.|+|+.|+|||||.|...+ + ...+|+|++|+||+..+.+... ....+|||.+|++||+++|.|+.|+|.++
T Consensus 2 ~~~~~V~~V~DGDT~~v~~~~-~-~~~~vrL~gIdaPe~~~~~~~~-----~~~~~~~g~~A~~~l~~~l~g~~V~~~~~ 74 (138)
T smart00318 2 EIRGVVERVLDGDTIRVRLPK-N-KLITIRLSGIDAPETARPNKGD-----GTTDEPFGEEAKEFLKKLLLGKKVQVEVD 74 (138)
T ss_pred ceeEEEEEEecCCEEEEEeCC-C-CEEEEEEEeccCCccCCCCCCC-----ccccCcHHHHHHHHHHHHhCCCEEEEEEe
Confidence 357999999999999999743 2 5789999999999998654311 12469999999999999999999999998
Q ss_pred ec-cCCcEEEEEEccCCCCccccccccccccchhhhhhhcccccccccccCcccccccCcccchhhhhhccccccCCCCC
Q psy16181 90 KP-EGNRYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPT 168 (480)
Q Consensus 90 ~~-~~~r~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (480)
.. .++|.+++||+. +
T Consensus 75 ~~D~~gr~~a~v~~~----------------------------------------------------------------~ 90 (138)
T smart00318 75 SKDRYGRFLGTVYLN----------------------------------------------------------------G 90 (138)
T ss_pred ccCCCCCEEEEEEEC----------------------------------------------------------------C
Confidence 84 578999999984 4
Q ss_pred cccHHHHHHhcCCeEeEcc---c-----chHHHHHHHHHHhCCCCCC
Q psy16181 169 DDDITKLLISEGWVSLRSK---N-----PDLLDLENKAKEAGKGKYS 207 (480)
Q Consensus 169 ~~nv~~~lv~~G~a~v~~~---~-----~~l~~~E~~Ak~~~~Giws 207 (480)
+.||+++||++|||+++.. . +.|.+||++||++++|||+
T Consensus 91 ~~~l~~~Lv~~G~A~~~~~~~~~~~~~~~~l~~ae~~Ar~~~~GlW~ 137 (138)
T smart00318 91 GNNIAEELVKEGLAKVYRYADKDEYRVYDELLEAEEAAKKARKGLWS 137 (138)
T ss_pred CCcHHHHHHhcCCEEEEEecCccccHhHHHHHHHHHHHHHhCcCCCC
Confidence 5689999999999999764 1 3799999999999999997
No 5
>PRK06518 hypothetical protein; Provisional
Probab=99.88 E-value=4.6e-22 Score=187.46 Aligned_cols=127 Identities=14% Similarity=0.159 Sum_probs=106.9
Q ss_pred hcCcEEEEEEEEecCCCeEEEEecC--CeEEEEEEEeeeccCCCCc---------hhHHHHHHHHHHHhcCCeEEEEEee
Q psy16181 232 FGKRIVKAVIDNINPGLTMRAFLLP--DHYYVAFCLSGIKIVRENE---------EYGREVRQYLEERILQRDVNVIIES 300 (480)
Q Consensus 232 ~k~k~l~aiVe~V~DGdtlrV~l~~--~~~~I~V~LaGIdaPe~~e---------Pfg~EAk~fl~~~LLqR~V~V~l~~ 300 (480)
.....+.|.| .|.|||||++.... .+..++|||+|||+||..| |||.+|+++|..+++++.|.+...+
T Consensus 19 ~~~~~~~G~v-~V~DGDTl~l~~~~~~~~~~~~VRL~GIDAPE~~Q~c~~~~~~wp~G~~A~~~L~~li~gk~V~~~~~~ 97 (177)
T PRK06518 19 NNVVIFHGRA-QVTSGVTFKLIADGWRKEITRDIRLYGVDTCAPRQKARLGDQEWPCGAVATAWLVTKTLNKWLSCRQAR 97 (177)
T ss_pred cccccccceE-EEEcCCEEEEeeccccCCCCeEEEEEEEcCCCCCCcccCCCCCCcHHHHHHHHHHHHHCCCeEEEEEec
Confidence 3456788988 79999999995221 1235789999999999766 9999999999999999999998755
Q ss_pred eecCCCCeEEEEEEeCCCCCcHHHHHHhhCCeeeeeecCCCCCHHHHHHHHHHHHHcccccCCC
Q psy16181 301 VQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKLREAEKLAQSERKRRWTN 364 (480)
Q Consensus 301 ~d~Dk~gr~lg~V~~~~~~~nIa~~LL~~GLA~v~~~~~~~~~~~~l~~AE~~AK~~k~GlW~~ 364 (480)
|+|||++|++++. +.|||++||++|||+++....+......|..||++||++++|||+.
T Consensus 98 ---D~ygR~lA~~~~~--g~dln~~mV~~G~A~ay~~~~~~~~~~~y~~aE~~AR~~k~GLW~~ 156 (177)
T PRK06518 98 ---MENGVHYAQCFVD--GVDIAALGLAEGMAVLSKDDHEDPGPAQYASLEEKARKAYRGLWSS 156 (177)
T ss_pred ---ccCCCEEEEEEEC--CEEHHHHHHhCCCEEEEeeccCCCCHHHHHHHHHHHHHhCCCCCCC
Confidence 5599999999998 7899999999999999875444433478999999999999999995
No 6
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.87 E-value=2.4e-21 Score=171.65 Aligned_cols=121 Identities=32% Similarity=0.505 Sum_probs=102.5
Q ss_pred EEeeCCEEEEEeCCCCCeeEEEEEeeecCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEEEeec-cCCc
Q psy16181 17 FVNSGDSITLITDPKLRTEVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYAWEAREFLRKLIIGKIVWYTAEKP-EGNR 95 (480)
Q Consensus 17 ~V~sGDti~v~~~~~~~~e~~v~l~~I~aP~~~~~~~~~~~~~~~~~~ep~a~eAre~Lr~~~iGk~V~~~~~~~-~~~r 95 (480)
+|+|||||.|...+. ...+|+|++|+||++...+. ......+|||.+|++||++++.|+.|.|.++.. .+||
T Consensus 1 rV~dGDt~~v~~~~~--~~~~vrL~gId~Pe~~~~~~-----~~~~~~~~~g~~A~~~l~~~l~~~~V~i~~~~~d~~gr 73 (129)
T cd00175 1 RVIDGDTIRVRLPPG--PLITVRLSGIDAPETARPNK-----GKSETDEPFGEEAKEFLKKLLLGKKVQVEVDSKDRYGR 73 (129)
T ss_pred CeecCcEEEEEeCCC--CEEEEEEEeecCccccCCcc-----CCCCCCCchHHHHHHHHHHHhCCCEEEEEEccCCCCCC
Confidence 489999999997532 57899999999999986432 112458999999999999999999999999874 4789
Q ss_pred EEEEEEccCCCCccccccccccccchhhhhhhcccccccccccCcccccccCcccchhhhhhccccccCCCCCcccHHHH
Q psy16181 96 YYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKL 175 (480)
Q Consensus 96 ~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~ 175 (480)
.+++||+. ++.||+++
T Consensus 74 ~la~v~~~----------------------------------------------------------------~~~~v~~~ 89 (129)
T cd00175 74 TLGTVYLN----------------------------------------------------------------GGENIAEE 89 (129)
T ss_pred EEEEEEeC----------------------------------------------------------------CCCcHHHH
Confidence 99999984 34799999
Q ss_pred HHhcCCeEeEcc-------cchHHHHHHHHHHhCCCCCCC
Q psy16181 176 LISEGWVSLRSK-------NPDLLDLENKAKEAGKGKYST 208 (480)
Q Consensus 176 lv~~G~a~v~~~-------~~~l~~~E~~Ak~~~~Giws~ 208 (480)
||++|||+++.. .+.|.+||++||++++|||+.
T Consensus 90 Lv~~G~A~~~~~~~~~~~~~~~l~~ae~~Ak~~k~GiW~~ 129 (129)
T cd00175 90 LVKEGLARVYRYYPDDSEYYDELLEAEEAAKKARKGLWSD 129 (129)
T ss_pred HHhcCCEEEEEECCCCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 999999999864 237999999999999999973
No 7
>KOG2039|consensus
Probab=99.87 E-value=2.7e-21 Score=219.06 Aligned_cols=377 Identities=24% Similarity=0.344 Sum_probs=285.0
Q ss_pred eeeEEEEEEeeCCEEEEEeCCCCCeeEEEEEeeecCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEEEe
Q psy16181 10 YRKGLVKFVNSGDSITLITDPKLRTEVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYAWEAREFLRKLIIGKIVWYTAE 89 (480)
Q Consensus 10 ~~~g~V~~V~sGDti~v~~~~~~~~e~~v~l~~I~aP~~~~~~~~~~~~~~~~~~ep~a~eAre~Lr~~~iGk~V~~~~~ 89 (480)
.+.+.|.+++.+|++.+..++ | .+.++.++.|+-|+.+...+... +..-||+.+|++||++..+|+.|++.++
T Consensus 320 ~~~~~v~e~~~~d~~~~~~~s-g-~~~~~~~~~i~~pr~~~~~~~~~-----p~~~~~q~~a~~~~~~~~i~~~v~~~~~ 392 (875)
T KOG2039|consen 320 GFSGKVVEVLVSDCVLVALDS-G-SENKLFLSSIRLPRAGEPGRSLK-----PYISPVQLVAREFLRKKLIGKRVILQMD 392 (875)
T ss_pred cccceeeeeeccCceEEecCC-C-CceEEEeeeccCccccccccccC-----CccccHHHHhhhhhhhhccCceeeEeee
Confidence 345679999999999999865 3 47899999999999332111111 1368999999999999999999999999
Q ss_pred eccCCcEEEEEEccCCCCccccccccccccchhhhhhhcccccccccccCcccccccCcccchhhhhhccccccCCCCCc
Q psy16181 90 KPEGNRYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTD 169 (480)
Q Consensus 90 ~~~~~r~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (480)
+....|+ +++.+.| .+.. ..+
T Consensus 393 ~~~~~~~-----------~~~~~~c----------------~~~~--------------------------------~~~ 413 (875)
T KOG2039|consen 393 VIRPRRE-----------NVPTKVC----------------ALPL--------------------------------GGG 413 (875)
T ss_pred ccccccc-----------ccccccc----------------cccC--------------------------------CCc
Confidence 9543231 0111222 1000 135
Q ss_pred ccHHHHHHhcCCeEeEcc----------cchHHHHHHHHHHhCCCCCCCCCCCCccccccCCCCC--chhhhhhhc-CcE
Q psy16181 170 DDITKLLISEGWVSLRSK----------NPDLLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPE--PKQVLDKFG-KRI 236 (480)
Q Consensus 170 ~nv~~~lv~~G~a~v~~~----------~~~l~~~E~~Ak~~~~Giws~~~~~~~~v~~i~~~~~--~~~~l~~~k-~k~ 236 (480)
.|+++.++..|++++.++ ++.|+.+|+.|...+.|+|+.+..+...+++++.+.. ...|++.+. +..
T Consensus 414 ~~~a~~~~~kg~~~~v~~~~~~~~~s~~~d~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~n~~~~~~~~~~~~~ 493 (875)
T KOG2039|consen 414 KNVAELLVKKGLATVVRKRQDDEQRSSHYDLLLVAEAIAIKGKKGCHSKKLDPTLRITDLTVDIVRNKVQFLPSLDRGNR 493 (875)
T ss_pred ceeeEEEecccchhhhhhHhhhhhhcchhhhhhcchHHHHhhhhhhcccCCCcceeechhhhhhhcCcEEeehhhccccc
Confidence 899999999999999776 3579999999999999999998555677888887664 447888877 789
Q ss_pred EEEEEEEecCCCeEEEEecCCeEEEEEEEeeeccCC-------CCchhHHHHHHHHHHHhcCCeEEEEEeeeecCCCCeE
Q psy16181 237 VKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVR-------ENEEYGREVRQYLEERILQRDVNVIIESVQNEKNRIM 309 (480)
Q Consensus 237 l~aiVe~V~DGdtlrV~l~~~~~~I~V~LaGIdaPe-------~~ePfg~EAk~fl~~~LLqR~V~V~l~~~d~Dk~gr~ 309 (480)
+.++|+.+++|+.++++++...+.+++.++|++||+ ..+||+.+|..|...+++++++++.++.++. .|++
T Consensus 494 ~~~~v~~~~~gs~~~~~~pk~~~~~~~~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~--~~~~ 571 (875)
T KOG2039|consen 494 VEAIVEAVISGSRLRLYIPKETCYCQFALAGIDCPSGARNDVQEGEPFSEEAIEFTRSLVLQREVELEVEITDK--NGNF 571 (875)
T ss_pred eeeeeeeeeccccceeccCCcceeEEEeeccccCcccccccccccCCccHHHHHHhhhheeccceEEEEeeecc--Cccc
Confidence 999999999999999999998999999999999997 5899999999999999999999999999998 6799
Q ss_pred EEEEEeCCCCCcHHHHHHhhCCeeeeeecCCCC-CHHHHHHHHHHHH-HcccccCCCCCCCCCC------------ceee
Q psy16181 310 NATLIHEGQKMNIGELLVREGFASCNTLLQGVY-DEKKLREAEKLAQ-SERKRRWTNYTPKKPP------------KERA 375 (480)
Q Consensus 310 lg~V~~~~~~~nIa~~LL~~GLA~v~~~~~~~~-~~~~l~~AE~~AK-~~k~GlW~~~~~~~~~------------k~~~ 375 (480)
+|..+... +.+++..+++.||+.++ +..... ....|..+|..|+ ..+.++|.++..+... ..+.
T Consensus 572 l~~~~~~~-~~~~s~~~~e~~L~~~~-~~~e~~~~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~ 649 (875)
T KOG2039|consen 572 LGSLYEDS-KTNLSLKLLEQGLAPEH-FAAERSSEYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTL 649 (875)
T ss_pred cccccccc-cccchhhhhhhhcCccc-hhhhhhhhccchhhhhhccccchhcceeecccccchhhheecccccccccccc
Confidence 99888763 56899999999999998 433322 2378999999999 9999999999877321 1334
Q ss_pred EEEEEEEeC-CEEEEEEcCCCc-----------eEEEEeccCC--CCCCCCC-CCCC-----------------------
Q psy16181 376 AVVLEIING-DGLVIKYVGDTK-----------EEKVFLSSIK--PPRPDGA-AAGG----------------------- 417 (480)
Q Consensus 376 g~VveVisg-d~l~V~~~~~g~-----------~~rV~Lssir--~pr~~~~-~~~~----------------------- 417 (480)
-.|+..+.. ..|+++..+++. ...-.+.+.. .|+.++. -|+|
T Consensus 650 ~~~~~~i~p~~~F~~q~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~~~~~~~V~ 729 (875)
T KOG2039|consen 650 KVVVTEITPGKGFYVQSISDGSKITKIMTNLSQLVELKPPSSGSYTPKRGDLCVAKYSLDGQWYRALIVEVLDPESMEVF 729 (875)
T ss_pred eeeEeeecCCCcceeecccchHHHHHHHHHHHHHhhhcccccCCCCCCCCCeeeeeeccccceeeeeeeeeccCcceeEE
Confidence 444444554 779998876531 1111222221 2333321 1122
Q ss_pred ----CCCCCCCcccCCCC---C---------------C----chhHHHHHHHHHHhhcCCEEEEE
Q psy16181 418 ----GGEGKAPVVRSKPL---Y---------------D----VPWLYEAREFLRTRLIGKKVMVS 456 (480)
Q Consensus 418 ----g~~~~~~~~~~~~~---~---------------~----~~~~~eArEfLRk~lIGK~V~v~ 456 (480)
||..+.|..+++|+ + . ..+..+|..+|.+-..|++++++
T Consensus 730 yiDygn~E~lp~~~l~~lp~~~~~~p~~a~~~~L~~ik~~~~~~~~e~~i~~l~~~~~~~~~~~~ 794 (875)
T KOG2039|consen 730 YIDYGNIETLPFVRLKPLPPHFSLLPPVAQECGLAGIKEPQLEDLKEEAIRYLDEDTLGHKCQVN 794 (875)
T ss_pred EEecCcccccccccccCCChHHhcCchHHhhhhhhcccCCcccchHHHHHHHHHHHhhcccceee
Confidence 77777787666665 1 2 45999999999999999988887
No 8
>PRK06518 hypothetical protein; Provisional
Probab=99.84 E-value=4e-20 Score=174.34 Aligned_cols=129 Identities=22% Similarity=0.281 Sum_probs=106.4
Q ss_pred ceeeEEEEEEeeCCEEEEEeCC-CCCeeEEEEEeeecCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEE
Q psy16181 9 IYRKGLVKFVNSGDSITLITDP-KLRTEVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYAWEAREFLRKLIIGKIVWYT 87 (480)
Q Consensus 9 ~~~~g~V~~V~sGDti~v~~~~-~~~~e~~v~l~~I~aP~~~~~~~~~~~~~~~~~~ep~a~eAre~Lr~~~iGk~V~~~ 87 (480)
..+.|+| .|+|||||+|.... .....++|||.+||||+++..+..+ ...+|||.+|++||+.++.|+.|.|.
T Consensus 22 ~~~~G~v-~V~DGDTl~l~~~~~~~~~~~~VRL~GIDAPE~~Q~c~~~------~~~wp~G~~A~~~L~~li~gk~V~~~ 94 (177)
T PRK06518 22 VIFHGRA-QVTSGVTFKLIADGWRKEITRDIRLYGVDTCAPRQKARLG------DQEWPCGAVATAWLVTKTLNKWLSCR 94 (177)
T ss_pred ccccceE-EEEcCCEEEEeeccccCCCCeEEEEEEEcCCCCCCcccCC------CCCCcHHHHHHHHHHHHHCCCeEEEE
Confidence 3567998 79999999997421 0123679999999999998755422 25799999999999999999999999
Q ss_pred EeeccCCcEEEEEEccCCCCccccccccccccchhhhhhhcccccccccccCcccccccCcccchhhhhhccccccCCCC
Q psy16181 88 AEKPEGNRYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPP 167 (480)
Q Consensus 88 ~~~~~~~r~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (480)
.....++|.++.+|+
T Consensus 95 ~~~D~ygR~lA~~~~----------------------------------------------------------------- 109 (177)
T PRK06518 95 QARMENGVHYAQCFV----------------------------------------------------------------- 109 (177)
T ss_pred EecccCCCEEEEEEE-----------------------------------------------------------------
Confidence 766557899999887
Q ss_pred CcccHHHHHHhcCCeEeEccc------chHHHHHHHHHHhCCCCCCCC
Q psy16181 168 TDDDITKLLISEGWVSLRSKN------PDLLDLENKAKEAGKGKYSTR 209 (480)
Q Consensus 168 ~~~nv~~~lv~~G~a~v~~~~------~~l~~~E~~Ak~~~~Giws~~ 209 (480)
++.|||++||++|||+++..+ ..|..+|+.|+++++|||+..
T Consensus 110 ~g~dln~~mV~~G~A~ay~~~~~~~~~~~y~~aE~~AR~~k~GLW~~~ 157 (177)
T PRK06518 110 DGVDIAALGLAEGMAVLSKDDHEDPGPAQYASLEEKARKAYRGLWSST 157 (177)
T ss_pred CCEEHHHHHHhCCCEEEEeeccCCCCHHHHHHHHHHHHHhCCCCCCCC
Confidence 357999999999999997642 369999999999999999965
No 9
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.84 E-value=7.1e-21 Score=162.53 Aligned_cols=101 Identities=28% Similarity=0.411 Sum_probs=87.2
Q ss_pred EEEEeeeccCCCC------chhHHHHHHHHHHHhcCCeEEEEEeeeecCCCCeEEEEEEeCCCCCcHHHHHHhhCCeeee
Q psy16181 262 AFCLSGIKIVREN------EEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCN 335 (480)
Q Consensus 262 ~V~LaGIdaPe~~------ePfg~EAk~fl~~~LLqR~V~V~l~~~d~Dk~gr~lg~V~~~~~~~nIa~~LL~~GLA~v~ 335 (480)
+|+|+|||||+.. +|||.+|++|++++|++++|.+.+.+...|++|+++|+|+++ +.|||++||++|||+++
T Consensus 1 ~vrL~gI~~Pe~~~~~~~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~d~~gr~~~~v~~~--~~~in~~Ll~~GlA~v~ 78 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPDKPEEPYGQEAKEFLRELLLGRQVVVEVDDIKQDKYGRLLAYVYVD--GEDINEELLEEGLARVY 78 (108)
T ss_dssp EEEETTEE-SSSTCCCTTTSTTHHHHHHHHHHHHHTCSCEEEEEESSBSTTSCEEEEEEET--TEEHHHHHHHTTSSEE-
T ss_pred CEEEEEEECCCCCCCCCccchHHHHHHHHHHHHhCCCeeeecccccCCCCCCceeEEEEEe--chhhhHHHHhCCeEEEE
Confidence 5899999999865 899999999999999999999999988556699999999999 88999999999999998
Q ss_pred eecCC-CCCHHHHHHHHHHHHHcccccCCC
Q psy16181 336 TLLQG-VYDEKKLREAEKLAQSERKRRWTN 364 (480)
Q Consensus 336 ~~~~~-~~~~~~l~~AE~~AK~~k~GlW~~ 364 (480)
..... ......|.+||++||++++|||++
T Consensus 79 ~~~~~~~~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 79 RRYPSNSEYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp CGBTTBCTTHHHHHHHHHHHHHTT-GGGCT
T ss_pred EecCCCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 74432 333499999999999999999985
No 10
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.80 E-value=5.6e-19 Score=167.81 Aligned_cols=122 Identities=20% Similarity=0.259 Sum_probs=105.6
Q ss_pred EEEEEEEecCCCeEEEEecCCeEEEEEEEeeeccCCCC--------chhHHHHHHHHHHHhcC-CeEEEEEeeeecCCCC
Q psy16181 237 VKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVREN--------EEYGREVRQYLEERILQ-RDVNVIIESVQNEKNR 307 (480)
Q Consensus 237 l~aiVe~V~DGdtlrV~l~~~~~~I~V~LaGIdaPe~~--------ePfg~EAk~fl~~~LLq-R~V~V~l~~~d~Dk~g 307 (480)
..+.|.+|.||||+.+.... ...++|||+|||+||.. +|||.+|++|++++|++ +.|++.+.. ..|+||
T Consensus 42 ~~~~v~~v~dGDT~~v~~~~-~~~~~iRl~gIdaPe~~~~~~~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~-~~d~y~ 119 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGEG-GQAVKIRLAGIDAPETKQTCAGGKSQPCGEEAREFLRNLLLGRRTVECDLAD-RKDRYG 119 (192)
T ss_pred CCCceEEecCCCeEEEecCC-CceeEEEEeccCCCcccccCCcccccchHHHHHHHHHHHhcCCceEEEecCC-cccCCC
Confidence 56789999999999997544 57789999999999975 89999999999999997 566666555 477899
Q ss_pred eEEEEEEeCCCCCcHHHHHHhhCCeeeeeecCCCCCHHHHHHHHHHHHHcccccCCCC
Q psy16181 308 IMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKLREAEKLAQSERKRRWTNY 365 (480)
Q Consensus 308 r~lg~V~~~~~~~nIa~~LL~~GLA~v~~~~~~~~~~~~l~~AE~~AK~~k~GlW~~~ 365 (480)
|++|+++.. +.|+|++||++|||+++. +......|..||+.||++++|||+..
T Consensus 120 R~la~v~~~--~~~v~~~lV~~G~A~~~~---~~~~~~~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 120 RLLAYVTVD--GTDVNLELVKEGLARVYY---NSEYGGEYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred cEEEEEEEC--CEEHHHHHHhCCCEEEec---cccchHHHHHHHHHHHHcccCccCCC
Confidence 999999976 789999999999999987 33334899999999999999999985
No 11
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.70 E-value=6.1e-17 Score=138.24 Aligned_cols=98 Identities=29% Similarity=0.510 Sum_probs=83.0
Q ss_pred EEEEeeecCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEEEEeec---cCCcEEEEEEccCCCCcccccc
Q psy16181 37 TFLFTNVQAPKIARRPRADGPPSAQPEDEPYAWEAREFLRKLIIGKIVWYTAEKP---EGNRYYGTLFYPNQDDDITKRS 113 (480)
Q Consensus 37 ~v~l~~I~aP~~~~~~~~~~~~~~~~~~ep~a~eAre~Lr~~~iGk~V~~~~~~~---~~~r~~g~v~~~~~~~~~~~~~ 113 (480)
+|+|+||+||+..+.+ ...+||+.+|++||++++.|+.|.+.+... ..+|.+|+||++
T Consensus 1 ~vrL~gI~~Pe~~~~~---------~~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~d~~gr~~~~v~~~---------- 61 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPD---------KPEEPYGQEAKEFLRELLLGRQVVVEVDDIKQDKYGRLLAYVYVD---------- 61 (108)
T ss_dssp EEEETTEE-SSSTCCC---------TTTSTTHHHHHHHHHHHHHTCSCEEEEEESSBSTTSCEEEEEEET----------
T ss_pred CEEEEEEECCCCCCCC---------CccchHHHHHHHHHHHHhCCCeeeecccccCCCCCCceeEEEEEe----------
Confidence 6999999999987543 258999999999999999999999998874 478999999983
Q ss_pred ccccccchhhhhhhcccccccccccCcccccccCcccchhhhhhccccccCCCCCcccHHHHHHhcCCeEeEcc------
Q psy16181 114 CGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEGWVSLRSK------ 187 (480)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~lv~~G~a~v~~~------ 187 (480)
+.|||+.||++|||.|+..
T Consensus 62 -------------------------------------------------------~~~in~~Ll~~GlA~v~~~~~~~~~ 86 (108)
T PF00565_consen 62 -------------------------------------------------------GEDINEELLEEGLARVYRRYPSNSE 86 (108)
T ss_dssp -------------------------------------------------------TEEHHHHHHHTTSSEE-CGBTTBCT
T ss_pred -------------------------------------------------------chhhhHHHHhCCeEEEEEecCCCcH
Confidence 5799999999999999753
Q ss_pred -cchHHHHHHHHHHhCCCCCCC
Q psy16181 188 -NPDLLDLENKAKEAGKGKYST 208 (480)
Q Consensus 188 -~~~l~~~E~~Ak~~~~Giws~ 208 (480)
...|++||++||++++|||+.
T Consensus 87 ~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 87 YYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp THHHHHHHHHHHHHTT-GGGCT
T ss_pred HHHHHHHHHHHHHHhCcCCCCC
Confidence 248999999999999999984
No 12
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.70 E-value=2.2e-16 Score=150.11 Aligned_cols=124 Identities=23% Similarity=0.322 Sum_probs=105.3
Q ss_pred eEEEEEEeeCCEEEEEeCCCCCeeEEEEEeeecCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhhhCC-CEEEEEEee
Q psy16181 12 KGLVKFVNSGDSITLITDPKLRTEVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYAWEAREFLRKLIIG-KIVWYTAEK 90 (480)
Q Consensus 12 ~g~V~~V~sGDti~v~~~~~~~~e~~v~l~~I~aP~~~~~~~~~~~~~~~~~~ep~a~eAre~Lr~~~iG-k~V~~~~~~ 90 (480)
.+.|..|.|||||.+.... ....+|||.+|+||+.+..+ .....+||+.+|++||++++.| +.|.|....
T Consensus 43 ~~~v~~v~dGDT~~v~~~~--~~~~~iRl~gIdaPe~~~~~-------~~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~ 113 (192)
T COG1525 43 DSTVVRVIDGDTLKVRGEG--GQAVKIRLAGIDAPETKQTC-------AGGKSQPCGEEAREFLRNLLLGRRTVECDLAD 113 (192)
T ss_pred CCceEEecCCCeEEEecCC--CceeEEEEeccCCCcccccC-------CcccccchHHHHHHHHHHHhcCCceEEEecCC
Confidence 4789999999999999863 35789999999999998643 1235799999999999999997 777777665
Q ss_pred -c-cCCcEEEEEEccCCCCccccccccccccchhhhhhhcccccccccccCcccccccCcccchhhhhhccccccCCCCC
Q psy16181 91 -P-EGNRYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPT 168 (480)
Q Consensus 91 -~-~~~r~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (480)
. +++|..+.+|. +
T Consensus 114 ~~d~y~R~la~v~~-----------------------------------------------------------------~ 128 (192)
T COG1525 114 RKDRYGRLLAYVTV-----------------------------------------------------------------D 128 (192)
T ss_pred cccCCCcEEEEEEE-----------------------------------------------------------------C
Confidence 2 36788888885 5
Q ss_pred cccHHHHHHhcCCeEeEc---ccchHHHHHHHHHHhCCCCCCCC
Q psy16181 169 DDDITKLLISEGWVSLRS---KNPDLLDLENKAKEAGKGKYSTR 209 (480)
Q Consensus 169 ~~nv~~~lv~~G~a~v~~---~~~~l~~~E~~Ak~~~~Giws~~ 209 (480)
+.|+|++||++|||.++. +.+.|.++|+.|+.+++|||+..
T Consensus 129 ~~~v~~~lV~~G~A~~~~~~~~~~~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 129 GTDVNLELVKEGLARVYYNSEYGGEYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred CEEHHHHHHhCCCEEEeccccchHHHHHHHHHHHHcccCccCCC
Confidence 789999999999999987 25699999999999999999986
No 13
>COG5618 Predicted periplasmic lipoprotein [General function prediction only]
Probab=64.99 E-value=55 Score=31.48 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=53.5
Q ss_pred ceeeEEEEEEEeC---CEEEEEEcCCCceEEEEeccC-CCCCCCCCCCCCCCCCCCCcccCCCCCCchhHHHHHHH----
Q psy16181 372 KERAAVVLEIING---DGLVIKYVGDTKEEKVFLSSI-KPPRPDGAAAGGGGEGKAPVVRSKPLYDVPWLYEAREF---- 443 (480)
Q Consensus 372 k~~~g~VveVisg---d~l~V~~~~~g~~~rV~Lssi-r~pr~~~~~~~~g~~~~~~~~~~~~~~~~~~~~eArEf---- 443 (480)
-.|+|+|+.+..- +.+-|..++||...||++-++ |.--.-|. .+.+...+++ -+..|+.-++-|
T Consensus 91 vrftGkVvaaetksr~g~v~vd~dgdga~~RvQiGPavrGtaiRDa------~~fiqFndFk--NQIeyaq~gkAln~~a 162 (206)
T COG5618 91 VRFTGKVVAAETKSREGLVRVDIDGDGADARVQIGPAVRGTAIRDA------LDFIQFNDFK--NQIEYAQFGKALNLRA 162 (206)
T ss_pred EEEeeEEEEeeeccccceEEEecCCCcceEEEEeccccccceeccc------cceeehhhhh--hHHHHHHHHHHHHHHH
Confidence 3789999976552 335566666777889998763 32221111 1111111111 156677666544
Q ss_pred --------HHHhhcCCEEEEEEeEeecCCCCC
Q psy16181 444 --------LRTRLIGKKVMVSEDYAQDARDKF 467 (480)
Q Consensus 444 --------LRk~lIGK~V~v~~d~~~~~~~~~ 467 (480)
=|..|+||+|.|.=-|.-+....+
T Consensus 163 ~k~Vl~klp~e~l~Gktv~vlga~tl~~~~~~ 194 (206)
T COG5618 163 LKEVLKKLPRESLIGKTVEVLGAYTLTPTSLL 194 (206)
T ss_pred HHHHHhhCChhhccCceEEEEEEEEccCCcce
Confidence 257799999999999988776554
No 14
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=63.39 E-value=15 Score=28.12 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=31.4
Q ss_pred eeeEEEEEEEeCCEEEEEEcC--CCceEEEEeccCCCCCC
Q psy16181 373 ERAAVVLEIINGDGLVIKYVG--DTKEEKVFLSSIKPPRP 410 (480)
Q Consensus 373 ~~~g~VveVisgd~l~V~~~~--~g~~~rV~Lssir~pr~ 410 (480)
=+.|+|+++..++.+.|...+ .+....+..+.|||..+
T Consensus 19 W~~a~V~~~~~~~~~~V~~~~~~~~~~e~v~~~~LRp~~~ 58 (61)
T smart00743 19 WWEAVVTKVLGDGKYLVRYLTESEPLKETVDWSDLRPHPP 58 (61)
T ss_pred EEEEEEEEECCCCEEEEEECCCCcccEEEEeHHHcccCCC
Confidence 468999999998889999986 66788889888887653
No 15
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=44.89 E-value=38 Score=24.34 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=29.0
Q ss_pred ceeeEEEEEEEeCCEEEEEEcCCCceEEEEeccCCC
Q psy16181 372 KERAAVVLEIINGDGLVIKYVGDTKEEKVFLSSIKP 407 (480)
Q Consensus 372 k~~~g~VveVisgd~l~V~~~~~g~~~rV~Lssir~ 407 (480)
+=+.++|+++...+.+.|...+-|....|.++.||+
T Consensus 13 ~wyra~V~~~~~~~~~~V~f~DyG~~~~v~~~~l~~ 48 (48)
T cd04508 13 KWYRAKITSILSDGKVEVFFVDYGNTEVVPLSDLRP 48 (48)
T ss_pred eEEEEEEEEECCCCcEEEEEEcCCCcEEEeHHHcCC
Confidence 357999999998888888888448888888887764
No 16
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=41.63 E-value=62 Score=27.67 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=27.1
Q ss_pred eeeEEEEEEEeCCEEEEEEcCCCceEEEEecc
Q psy16181 373 ERAAVVLEIINGDGLVIKYVGDTKEEKVFLSS 404 (480)
Q Consensus 373 ~~~g~VveVisgd~l~V~~~~~g~~~rV~Lss 404 (480)
++.|+|+++..++.|.|+++ +|.+..-++|.
T Consensus 8 e~~G~V~e~Lp~~~frV~Le-nG~~vla~isG 38 (87)
T PRK12442 8 ELDGIVDEVLPDSRFRVTLE-NGVEVGAYASG 38 (87)
T ss_pred EEEEEEEEECCCCEEEEEeC-CCCEEEEEecc
Confidence 67999999999999999998 78777777775
No 17
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=38.19 E-value=50 Score=24.57 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=30.9
Q ss_pred ceeeEEEEEEEeCCEEEEEEcCCCceEEEEeccCCCCC
Q psy16181 372 KERAAVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPR 409 (480)
Q Consensus 372 k~~~g~VveVisgd~l~V~~~~~g~~~rV~Lssir~pr 409 (480)
.=|+++|+++.+.+.+.|...+.|....|..+.||+-.
T Consensus 17 ~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l~ 54 (57)
T smart00333 17 EWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPLP 54 (57)
T ss_pred CEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecCC
Confidence 35799999998878888888845888899999887643
No 18
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=37.37 E-value=79 Score=26.29 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=28.7
Q ss_pred ceeeEEEEEEEeCCEEEEEEcCCCceEEEEecc
Q psy16181 372 KERAAVVLEIINGDGLVIKYVGDTKEEKVFLSS 404 (480)
Q Consensus 372 k~~~g~VveVisgd~l~V~~~~~g~~~rV~Lss 404 (480)
-++.|+|++...++.|.|+.. ||.++.-+++.
T Consensus 7 ~e~~g~V~e~L~~~~f~v~~e-dg~~~~ahI~G 38 (75)
T COG0361 7 IEMEGTVIEMLPNGRFRVELE-NGHERLAHISG 38 (75)
T ss_pred cEEEEEEEEecCCCEEEEEec-CCcEEEEEccC
Confidence 478999999999999999998 89888888875
No 19
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=35.71 E-value=95 Score=25.30 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=27.7
Q ss_pred eeeEEEEEEEeCCEEEEEEcCCCceEEEEecc
Q psy16181 373 ERAAVVLEIINGDGLVIKYVGDTKEEKVFLSS 404 (480)
Q Consensus 373 ~~~g~VveVisgd~l~V~~~~~g~~~rV~Lss 404 (480)
++.|+|++...++.|.|++. ||.+..-++|.
T Consensus 6 e~~G~V~e~L~~~~f~V~l~-ng~~vla~i~G 36 (68)
T TIGR00008 6 EMEGKVTESLPNAMFRVELE-NGHEVLAHISG 36 (68)
T ss_pred EEEEEEEEECCCCEEEEEEC-CCCEEEEEecC
Confidence 57999999999999999998 78888888875
No 20
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=26.52 E-value=1.7e+02 Score=23.78 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=34.9
Q ss_pred EEEEEEEEecCCCeEEEEecCCeEEEEEEEee-eccCCCCchhHHHHHHHHHHH-hcCCeEEEEEeeeec
Q psy16181 236 IVKAVIDNINPGLTMRAFLLPDHYYVAFCLSG-IKIVRENEEYGREVRQYLEER-ILQRDVNVIIESVQN 303 (480)
Q Consensus 236 ~l~aiVe~V~DGdtlrV~l~~~~~~I~V~LaG-IdaPe~~ePfg~EAk~fl~~~-LLqR~V~V~l~~~d~ 303 (480)
.+.|+|..++.++.|+|.+.. +..+.-+++| ++.. +-+ +.+-.|.|++-..|.
T Consensus 6 e~~G~V~e~L~~~~f~V~l~n-g~~vla~i~GKmr~~--------------rI~I~~GD~V~Ve~spyd~ 60 (68)
T TIGR00008 6 EMEGKVTESLPNAMFRVELEN-GHEVLAHISGKIRMH--------------YIRILPGDKVKVELSPYDL 60 (68)
T ss_pred EEEEEEEEECCCCEEEEEECC-CCEEEEEecCcchhc--------------cEEECCCCEEEEEECcccC
Confidence 578999999999999998754 4455566666 1111 112 235567777776654
No 21
>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.
Probab=25.22 E-value=2e+02 Score=22.64 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=26.7
Q ss_pred eeeEEEEEEEeCCEEEEEEcCCCceEEEEecc
Q psy16181 373 ERAAVVLEIINGDGLVIKYVGDTKEEKVFLSS 404 (480)
Q Consensus 373 ~~~g~VveVisgd~l~V~~~~~g~~~rV~Lss 404 (480)
+..|+|++...++.|.|... ||.....+|+.
T Consensus 4 e~~~~V~~~lG~~~~~V~~~-dg~~~l~~i~g 34 (65)
T PF01176_consen 4 EVIGRVTEMLGNNLFEVECE-DGEERLARIPG 34 (65)
T ss_dssp EEEEEEEEEESSSEEEEEET-TSEEEEEEE-H
T ss_pred EEEEEEEEECCCCEEEEEeC-CCCEEEEEecc
Confidence 57899999999999999998 88888888774
No 22
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=25.10 E-value=1.8e+02 Score=24.90 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=36.4
Q ss_pred EEEEEEEEecCCCeEEEEecCCeEEEEEEEee-eccCCCCchhHHHHHHHHHHHhcCCeEEEEEeeeec
Q psy16181 236 IVKAVIDNINPGLTMRAFLLPDHYYVAFCLSG-IKIVRENEEYGREVRQYLEERILQRDVNVIIESVQN 303 (480)
Q Consensus 236 ~l~aiVe~V~DGdtlrV~l~~~~~~I~V~LaG-IdaPe~~ePfg~EAk~fl~~~LLqR~V~V~l~~~d~ 303 (480)
.+.|+|+.++.++.|+|.+.. +..+.-.++| ++- +--..+.+-.|.|++...|-
T Consensus 8 e~~G~V~e~Lp~~~frV~Len-G~~vla~isGKmR~-------------~rIrIl~GD~V~VE~spYDl 62 (87)
T PRK12442 8 ELDGIVDEVLPDSRFRVTLEN-GVEVGAYASGRMRK-------------HRIRILAGDRVTLELSPYDL 62 (87)
T ss_pred EEEEEEEEECCCCEEEEEeCC-CCEEEEEeccceee-------------eeEEecCCCEEEEEECcccC
Confidence 578999999999999998754 4455556665 221 01112446678888887775
No 23
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=25.04 E-value=1.2e+02 Score=27.66 Aligned_cols=50 Identities=18% Similarity=0.150 Sum_probs=33.4
Q ss_pred CCeEEEEEEeCCCCCcHHHHHHhhCCeeeeeec-----CCCCCH-HHHHHHHHHHHHc
Q psy16181 306 NRIMNATLIHEGQKMNIGELLVREGFASCNTLL-----QGVYDE-KKLREAEKLAQSE 357 (480)
Q Consensus 306 ~gr~lg~V~~~~~~~nIa~~LL~~GLA~v~~~~-----~~~~~~-~~l~~AE~~AK~~ 357 (480)
+|+ ++||+.++.-.+--.||+.|+..+..-. .+..+. --|+++|+-||.-
T Consensus 35 ~G~--~wvWi~DN~~~~vRALl~~grV~v~~eGRYLl~l~~~~s~~plr~kE~~ak~v 90 (132)
T PF14468_consen 35 FGN--AWVWIHDNQSEVVRALLQAGRVKVNKEGRYLLDLDLFDSDWPLRKKEAMAKHV 90 (132)
T ss_pred cCc--eEEEEecCcCHHHHHHHHcCceeeccCceeeeecccccCCCchHHHHHHHHHH
Confidence 566 5777764334599999999999987422 222222 5688888888763
No 24
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=22.03 E-value=1.5e+02 Score=22.55 Aligned_cols=38 Identities=8% Similarity=-0.004 Sum_probs=28.4
Q ss_pred CceeeEEEEEEeeCCEEEEEeCCC-CCeeEEEEEeeecC
Q psy16181 8 VIYRKGLVKFVNSGDSITLITDPK-LRTEVTFLFTNVQA 45 (480)
Q Consensus 8 ~~~~~g~V~~V~sGDti~v~~~~~-~~~e~~v~l~~I~a 45 (480)
..++.|+|+.|..++.+.|..... .+.+.++..++|+.
T Consensus 17 ~~W~~a~V~~~~~~~~~~V~~~~~~~~~~e~v~~~~LRp 55 (61)
T smart00743 17 DSWWEAVVTKVLGDGKYLVRYLTESEPLKETVDWSDLRP 55 (61)
T ss_pred CEEEEEEEEEECCCCEEEEEECCCCcccEEEEeHHHccc
Confidence 458899999999989999988641 23566777777754
Done!