Query psy16181
Match_columns 480
No_of_seqs 289 out of 1676
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 22:51:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bdl_A Staphylococcal nuclease 100.0 5.4E-58 1.9E-62 497.2 36.5 392 9-477 23-526 (570)
2 3bdl_A Staphylococcal nuclease 100.0 4.1E-30 1.4E-34 278.8 27.3 226 234-479 22-297 (570)
3 4eqp_A Thermonuclease; staphyl 99.9 7.8E-27 2.7E-31 211.5 15.3 131 235-369 8-141 (143)
4 4eqp_A Thermonuclease; staphyl 99.9 1.8E-22 6.1E-27 182.8 13.4 124 6-212 5-140 (143)
5 2wac_A CG7008-PA; unknown func 99.6 1.8E-14 6.1E-19 136.7 15.8 127 234-365 66-217 (218)
6 2wac_A CG7008-PA; unknown func 99.5 3.1E-13 1.1E-17 128.1 15.1 122 8-209 66-217 (218)
7 2hqx_A P100 CO-activator tudor 99.3 1E-12 3.5E-17 127.6 4.6 131 234-368 79-235 (246)
8 2hqx_A P100 CO-activator tudor 99.2 1.4E-11 4.6E-16 119.7 5.2 137 8-210 79-233 (246)
9 4b9w_A TDRD1, tudor domain-con 97.0 0.0049 1.7E-07 57.7 11.3 89 9-101 81-177 (201)
10 4b9w_A TDRD1, tudor domain-con 96.9 0.0089 3.1E-07 56.0 12.5 95 234-333 80-198 (201)
11 4b9x_A TDRD1, tudor domain-con 96.9 0.0072 2.5E-07 57.7 11.9 92 9-101 81-177 (226)
12 4b9x_A TDRD1, tudor domain-con 96.8 0.011 3.8E-07 56.4 12.2 97 234-335 80-200 (226)
13 3ntk_A Maternal protein tudor; 94.7 0.11 3.7E-06 47.3 8.6 84 234-326 62-166 (169)
14 3ntk_A Maternal protein tudor; 91.1 1 3.4E-05 40.8 9.4 88 8-103 62-158 (169)
15 1mhn_A SurviVal motor neuron p 61.4 18 0.00062 26.8 5.8 38 372-409 19-57 (59)
16 3s6w_A Tudor domain-containing 48.7 20 0.00069 26.0 4.1 36 372-407 17-53 (54)
17 3p8d_A Medulloblastoma antigen 41.7 25 0.00086 27.4 3.8 38 372-410 21-58 (67)
18 1g5v_A SurviVal motor neuron p 38.9 52 0.0018 26.7 5.5 39 372-410 26-65 (88)
19 4a4f_A SurviVal of motor neuro 37.0 46 0.0016 25.0 4.6 37 372-408 24-61 (64)
20 3qii_A PHD finger protein 20; 36.7 32 0.0011 28.1 3.8 39 372-411 36-74 (85)
21 3h8z_A FragIle X mental retard 31.3 67 0.0023 28.0 5.3 39 372-411 16-55 (128)
22 2d9t_A Tudor domain-containing 30.7 57 0.002 25.6 4.4 39 372-410 25-64 (78)
23 3pnw_C Tudor domain-containing 30.5 55 0.0019 25.7 4.2 38 372-409 33-71 (77)
24 3kdf_A Replication protein A 1 25.6 1.2E+02 0.0039 26.0 5.7 40 226-266 14-56 (121)
25 2equ_A PHD finger protein 20-l 23.8 56 0.0019 25.7 3.1 38 372-410 24-61 (74)
26 1mhn_A SurviVal motor neuron p 20.0 1.4E+02 0.0049 21.7 4.6 38 8-46 18-56 (59)
No 1
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=100.00 E-value=5.4e-58 Score=497.18 Aligned_cols=392 Identities=23% Similarity=0.283 Sum_probs=307.2
Q ss_pred ceeeEEEEEEeeCCEEEEEeCCCCCeeEEEEEeeecCCCCCCCCCCCCC-CCCCCCCChhHHHHHHHHHhhhCCCEEEEE
Q psy16181 9 IYRKGLVKFVNSGDSITLITDPKLRTEVTFLFTNVQAPKIARRPRADGP-PSAQPEDEPYAWEAREFLRKLIIGKIVWYT 87 (480)
Q Consensus 9 ~~~~g~V~~V~sGDti~v~~~~~~~~e~~v~l~~I~aP~~~~~~~~~~~-~~~~~~~ep~a~eAre~Lr~~~iGk~V~~~ 87 (480)
..+.|+|++|+|||||+|...+ ..+++|||++|+||++.+.++.+.+ ......++|||+||+||||++|+||+|+|.
T Consensus 23 ~~~~~~V~~V~DGDTi~v~~~~--g~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~gk~V~~~ 100 (570)
T 3bdl_A 23 KQFVAKVMQVLNADAIVVKLNS--GDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVT 100 (570)
T ss_dssp SEEEEEEEEEETTTEEEEECTT--SCEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEEEEEccCCEEEEECCC--CCEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhCCCEEEEE
Confidence 5788999999999999998532 3589999999999999754331100 000114699999999999999999999999
Q ss_pred Eeec-----------cCC-cEEEEEEccCCCCccccccccccccchhhhhhhcccccccccccCcccccccCcccchhhh
Q psy16181 88 AEKP-----------EGN-RYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFA 155 (480)
Q Consensus 88 ~~~~-----------~~~-r~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (480)
+++. .++ |.+++||+
T Consensus 101 ~~~~~~~~~~~~~~D~yg~R~la~v~~----------------------------------------------------- 127 (570)
T 3bdl_A 101 VDYIRPASPATETVPAFSERTCATVTI----------------------------------------------------- 127 (570)
T ss_dssp EEEEESSCCCSSCSSSSCCEEEEEEEE-----------------------------------------------------
T ss_pred EEeeccccccccccCCCCceEEEEEcc-----------------------------------------------------
Confidence 9972 256 88888887
Q ss_pred hhccccccCCCCCcccHHHHHHhcCCeEeEcc----------cchHHHHHHHHHHhCCCCCCCCCCCCccccccCCCCC-
Q psy16181 156 CMFLFLRTEFPPTDDDITKLLISEGWVSLRSK----------NPDLLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPE- 224 (480)
Q Consensus 156 ~~~~~~~~~~~~~~~nv~~~lv~~G~a~v~~~----------~~~l~~~E~~Ak~~~~Giws~~~~~~~~v~~i~~~~~- 224 (480)
++.|||++||++|||+|+++ ++.|++||++||++++|||+..+.+..++++++++..
T Consensus 128 ------------~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~GlW~~~~~~~~~~~d~~~~~~~ 195 (570)
T 3bdl_A 128 ------------GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISGDTQK 195 (570)
T ss_dssp ------------TTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTCGGGCCSCCCCCCCEECTTCHHH
T ss_pred ------------CCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCCCCCCCCCCCcceeeecCCchHH
Confidence 46899999999999999763 2379999999999999999997667788999998866
Q ss_pred chhhhhhhc-CcEEEEEEEEecCCCeEEEEecCCeEEEEEEEeeeccCC----------CCchhHHHHHHHHHHHhcCCe
Q psy16181 225 PKQVLDKFG-KRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVR----------ENEEYGREVRQYLEERILQRD 293 (480)
Q Consensus 225 ~~~~l~~~k-~k~l~aiVe~V~DGdtlrV~l~~~~~~I~V~LaGIdaPe----------~~ePfg~EAk~fl~~~LLqR~ 293 (480)
+++|++.++ ++.+.|+|++|.|||||+|.+++++..++|||+|||||+ ..+|||.||++|++++|++|+
T Consensus 196 ~~~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~r~ 275 (570)
T 3bdl_A 196 AKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQRE 275 (570)
T ss_dssp HHHHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCCCCCCCCccccChHHHHHHHHHHHHhcCCe
Confidence 899999877 899999999999999999998888999999999999997 368999999999999999999
Q ss_pred EEEEEeeeecCCCCeEEEEEEeCCCCCcHHHHHHhhCCeeeeeecCCCCCHHHHHHHHHHHHHcccccCCCCCCCCC---
Q psy16181 294 VNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKLREAEKLAQSERKRRWTNYTPKKP--- 370 (480)
Q Consensus 294 V~V~l~~~d~Dk~gr~lg~V~~~~~~~nIa~~LL~~GLA~v~~~~~~~~~~~~l~~AE~~AK~~k~GlW~~~~~~~~--- 370 (480)
|+|.+.+.|+ |||++|+|+++ +.||+++||++|||+++....+......|++||++||++++|||+.+.++..
T Consensus 276 V~~~~~~~D~--ygR~la~v~~~--~~~v~~~Lv~~GlA~~~~~~~~~~~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~ 351 (570)
T 3bdl_A 276 VEVEVESMDK--AGNFIGWLHID--GANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEV 351 (570)
T ss_dssp EEEEEEEECT--TSCEEEEEEET--TEEHHHHHHHTTSSEECGGGTTSTTHHHHHHHHHHHHHHTCGGGC----------
T ss_pred EEEEEEeEcC--CCCEEEEEEEC--CEEHHHHHHHcCCcEEEecCCCcchHHHHHHHHHHHHHhCCCCCcccccccchhc
Confidence 9999998766 99999999999 7899999999999999822223333489999999999999999998876521
Q ss_pred --------C--ceeeEEEEEEEeCCEEEEEEcCCCc--------eEE-----EEeccCCCCCCCCC-CCCC---------
Q psy16181 371 --------P--KERAAVVLEIINGDGLVIKYVGDTK--------EEK-----VFLSSIKPPRPDGA-AAGG--------- 417 (480)
Q Consensus 371 --------~--k~~~g~VveVisgd~l~V~~~~~g~--------~~r-----V~Lssir~pr~~~~-~~~~--------- 417 (480)
. ..+.+.|+.|.+.+.|+|+..++.. ... -.|..+..|+.++. .|++
T Consensus 352 ~~~~~~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~~~~l~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~d~~wyRa~ 431 (570)
T 3bdl_A 352 MPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFVDGEWYRAR 431 (570)
T ss_dssp CCCCCCSSCCCCCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECTTSCEEEEE
T ss_pred ccccccCCCCCcEEEEEEEEEECCCeEEEEECCcHHHHHHHHHHHHHHHhcCCCCCCCcCCCcCCEEEEEECCCCEEEEE
Confidence 1 3468999999999999999974321 000 01112234555532 2221
Q ss_pred -----------------CCCCCCCcccCCCC---C---------------------CchhHHHHHHHHHHhhcCCEEEEE
Q psy16181 418 -----------------GGEGKAPVVRSKPL---Y---------------------DVPWLYEAREFLRTRLIGKKVMVS 456 (480)
Q Consensus 418 -----------------g~~~~~~~~~~~~~---~---------------------~~~~~~eArEfLRk~lIGK~V~v~ 456 (480)
||...++..+++|| | +..|..+|.+||++.+.||.+.++
T Consensus 432 I~~v~~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La~v~pp~~~~w~~ea~~~f~~lv~~k~l~~~ 511 (570)
T 3bdl_A 432 VEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLN 511 (570)
T ss_dssp EEEEEETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEETTEECCSSHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEcCCCeEEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEECCeEcCCCCCCcHHHHHHHHHHhCCCEEEEE
Confidence 66555554444433 1 246999999999999999999999
Q ss_pred EeEeecCCCCCCCeeEEEEEe
Q psy16181 457 EDYAQDARDKFPEKKCVSVFV 477 (480)
Q Consensus 457 ~d~~~~~~~~~~~~~~~tv~~ 477 (480)
|.+.. +...+++++.
T Consensus 512 V~~~~------~~~~~V~L~~ 526 (570)
T 3bdl_A 512 VEHLS------AGCPHVTLQF 526 (570)
T ss_dssp EEECC------SSSCEEEEEE
T ss_pred EEEEe------CCcEEEEEEE
Confidence 98865 2345565553
No 2
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=278.78 Aligned_cols=226 Identities=21% Similarity=0.193 Sum_probs=184.9
Q ss_pred CcEEEEEEEEecCCCeEEEEecCCeEEEEEEEeeeccCCC----------------CchhHHHHHHHHHHHhcCCeEEEE
Q psy16181 234 KRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVRE----------------NEEYGREVRQYLEERILQRDVNVI 297 (480)
Q Consensus 234 ~k~l~aiVe~V~DGdtlrV~l~~~~~~I~V~LaGIdaPe~----------------~ePfg~EAk~fl~~~LLqR~V~V~ 297 (480)
...+.|+|.+|.|||||.|.. .++...+|||+||||||. .+|||.||++||+++|.++.|++.
T Consensus 22 ~~~~~~~V~~V~DGDTi~v~~-~~g~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~gk~V~~~ 100 (570)
T 3bdl_A 22 DKQFVAKVMQVLNADAIVVKL-NSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVT 100 (570)
T ss_dssp CSEEEEEEEEEETTTEEEEEC-TTSCEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEEEEEEccCCEEEEEC-CCCCEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhCCCEEEEE
Confidence 567899999999999999963 346678999999999994 479999999999999999999999
Q ss_pred Eeee--------ecCCCC-eEEEEEEeCCCCCcHHHHHHhhCCeeeeeec----CCCCCHHHHHHHHHHHHHcccccCCC
Q psy16181 298 IESV--------QNEKNR-IMNATLIHEGQKMNIGELLVREGFASCNTLL----QGVYDEKKLREAEKLAQSERKRRWTN 364 (480)
Q Consensus 298 l~~~--------d~Dk~g-r~lg~V~~~~~~~nIa~~LL~~GLA~v~~~~----~~~~~~~~l~~AE~~AK~~k~GlW~~ 364 (480)
++.. ..|+|| |++|+|+++ +.|||++||++|||+++... .....++.|.+||++||++++|||+.
T Consensus 101 ~~~~~~~~~~~~~~D~yg~R~la~v~~~--g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~GlW~~ 178 (570)
T 3bdl_A 101 VDYIRPASPATETVPAFSERTCATVTIG--GINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSK 178 (570)
T ss_dssp EEEEESSCCCSSCSSSSCCEEEEEEEET--TEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTCGGGCC
T ss_pred EEeeccccccccccCCCCceEEEEEccC--CccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCCCCCCC
Confidence 9975 457799 999999998 78999999999999998632 12223489999999999999999997
Q ss_pred CCCCCC-------C--------------ceeeEEEEEEEeCCEEEEEEcCCCceEEEEeccCCCCCCCCCCCCCCCCCCC
Q psy16181 365 YTPKKP-------P--------------KERAAVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKA 423 (480)
Q Consensus 365 ~~~~~~-------~--------------k~~~g~VveVisgd~l~V~~~~~g~~~rV~Lssir~pr~~~~~~~~g~~~~~ 423 (480)
..++.. + +.+.|+|+.|++||||.|....+|...+|.|+.|.+|....+. .+.
T Consensus 179 ~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~~~~-----~~~- 252 (570)
T 3bdl_A 179 KEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNL-----PGL- 252 (570)
T ss_dssp SCCCCCCCEECTTCHHHHHHHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCCEEE-----TTE-
T ss_pred CCCCcceeeecCCchHHHHHHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCCCCC-----CCC-
Confidence 543321 1 4679999999999999999866788999999999999754210 000
Q ss_pred CcccCCCCCCchhHHHHHHHHHHhhcCCEEEEEEeEeecCCCCCCCeeEEEEEeCC
Q psy16181 424 PVVRSKPLYDVPWLYEAREFLRTRLIGKKVMVSEDYAQDARDKFPEKKCVSVFVGQ 479 (480)
Q Consensus 424 ~~~~~~~~~~~~~~~eArEfLRk~lIGK~V~v~~d~~~~~~~~~~~~~~~tv~~~~ 479 (480)
.. ...||+.||++||++++.|+.|.+.++.. |.| .|..++|+++|
T Consensus 253 ----~~--~~~~~g~eA~~~l~~~l~~r~V~~~~~~~----D~y-gR~la~v~~~~ 297 (570)
T 3bdl_A 253 ----VQ--EGEPFSEEATLFTKELVLQREVEVEVESM----DKA-GNFIGWLHIDG 297 (570)
T ss_dssp ----EE--CCCTTHHHHHHHHHHHHTTCEEEEEEEEE----CTT-SCEEEEEEETT
T ss_pred ----cc--ccChHHHHHHHHHHHHhcCCeEEEEEEeE----cCC-CCEEEEEEECC
Confidence 00 13689999999999999999999998742 333 58889998865
No 3
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=99.94 E-value=7.8e-27 Score=211.45 Aligned_cols=131 Identities=21% Similarity=0.239 Sum_probs=110.0
Q ss_pred cEEEEEEEEecCCCeEEEEecCCeEEEEEEEeeeccCCCCchhHHHHHHHHHHHhc-CCeEEEEEee-eecCCCCeEEEE
Q psy16181 235 RIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVRENEEYGREVRQYLEERIL-QRDVNVIIES-VQNEKNRIMNAT 312 (480)
Q Consensus 235 k~l~aiVe~V~DGdtlrV~l~~~~~~I~V~LaGIdaPe~~ePfg~EAk~fl~~~LL-qR~V~V~l~~-~d~Dk~gr~lg~ 312 (480)
....|+|.+|+|||||+|.. ++..++|||+||||||..||||.+|++|++++|. +++|.|.++. ...|+|||++|+
T Consensus 8 ~~~~~~V~~V~DGDTi~v~~--~g~~~~VRL~gIDaPE~~q~~g~~A~~~l~~ll~~g~~V~~~~d~~~~~D~ygR~la~ 85 (143)
T 4eqp_A 8 HKEPATLIKAIDGDTVKLMY--KGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKDEVEFDKGQRTDKYGRGLAY 85 (143)
T ss_dssp CEEEEEEEEECSSSEEEEEE--TTEEEEEEETTEECCCTTSTTHHHHHHHHHHHHHHCSCEEEECCSSCSBCTTSCEEEE
T ss_pred ceeeEEEEEEECCCEEEEEe--CCcEEEEEEEeecCCCcCCchHHHHHHHHHHHHhcCCeEEEEEccccccCCCCCEEEE
Confidence 45789999999999999975 3567899999999999999999999999999999 6999999863 345679999999
Q ss_pred EEeCCCCCcHHHHHHhhCCeeee-eecCCCCCHHHHHHHHHHHHHcccccCCCCCCCC
Q psy16181 313 LIHEGQKMNIGELLVREGFASCN-TLLQGVYDEKKLREAEKLAQSERKRRWTNYTPKK 369 (480)
Q Consensus 313 V~~~~~~~nIa~~LL~~GLA~v~-~~~~~~~~~~~l~~AE~~AK~~k~GlW~~~~~~~ 369 (480)
|+.+ +.|||++||++|||+++ .+..+..+...|.+||++||++++|||+...|+.
T Consensus 86 v~~~--g~~vn~~lv~~GlA~v~~~~~~~~~~~~~~~~aE~~Ar~~k~GlW~~~~p~~ 141 (143)
T 4eqp_A 86 IYAD--GKMVNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWSEDNADS 141 (143)
T ss_dssp EEET--TEEHHHHHHHTTSSEECCCCTTSCTTHHHHHHHHHHHHHTTCGGGC------
T ss_pred EEEC--CchHHHHHHHCCCeEEEeecCCCcchHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 9987 78999999999999985 4555544458999999999999999999988753
No 4
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=99.88 E-value=1.8e-22 Score=182.82 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=101.5
Q ss_pred CCCceeeEEEEEEeeCCEEEEEeCCCCCeeEEEEEeeecCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhhhC-CCEE
Q psy16181 6 PPVIYRKGLVKFVNSGDSITLITDPKLRTEVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYAWEAREFLRKLII-GKIV 84 (480)
Q Consensus 6 ~~~~~~~g~V~~V~sGDti~v~~~~~~~~e~~v~l~~I~aP~~~~~~~~~~~~~~~~~~ep~a~eAre~Lr~~~i-Gk~V 84 (480)
+......|+|++|+|||||.|..+ + .+.+|||++|+||++ .+||+.+|++||+++|. |+.|
T Consensus 5 ~~~~~~~~~V~~V~DGDTi~v~~~--g-~~~~VRL~gIDaPE~---------------~q~~g~~A~~~l~~ll~~g~~V 66 (143)
T 4eqp_A 5 KKLHKEPATLIKAIDGDTVKLMYK--G-QPMTFRLLLVDTPEF---------------NEKYGPEASAFTKKMVENAKKD 66 (143)
T ss_dssp --CCEEEEEEEEECSSSEEEEEET--T-EEEEEEETTEECCCT---------------TSTTHHHHHHHHHHHHHHCSCE
T ss_pred CCCceeeEEEEEEECCCEEEEEeC--C-cEEEEEEEeecCCCc---------------CCchHHHHHHHHHHHHhcCCeE
Confidence 334578899999999999999863 2 578999999999986 37999999999999998 8999
Q ss_pred EEEEee----ccCCcEEEEEEccCCCCccccccccccccchhhhhhhcccccccccccCcccccccCcccchhhhhhccc
Q psy16181 85 WYTAEK----PEGNRYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLF 160 (480)
Q Consensus 85 ~~~~~~----~~~~r~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (480)
.|.++. ..++|.+++||+
T Consensus 67 ~~~~d~~~~~D~ygR~la~v~~---------------------------------------------------------- 88 (143)
T 4eqp_A 67 EVEFDKGQRTDKYGRGLAYIYA---------------------------------------------------------- 88 (143)
T ss_dssp EEECCSSCSBCTTSCEEEEEEE----------------------------------------------------------
T ss_pred EEEEccccccCCCCCEEEEEEE----------------------------------------------------------
Confidence 999863 247899999997
Q ss_pred cccCCCCCcccHHHHHHhcCCeEeEc-c------cchHHHHHHHHHHhCCCCCCCCCCC
Q psy16181 161 LRTEFPPTDDDITKLLISEGWVSLRS-K------NPDLLDLENKAKEAGKGKYSTRDEP 212 (480)
Q Consensus 161 ~~~~~~~~~~nv~~~lv~~G~a~v~~-~------~~~l~~~E~~Ak~~~~Giws~~~~~ 212 (480)
++.|||++||++|||+++. . .+.|.+||++||++++|||+...++
T Consensus 89 -------~g~~vn~~lv~~GlA~v~~~~~~~~~~~~~~~~aE~~Ar~~k~GlW~~~~p~ 140 (143)
T 4eqp_A 89 -------DGKMVNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWSEDNAD 140 (143)
T ss_dssp -------TTEEHHHHHHHTTSSEECCCCTTSCTTHHHHHHHHHHHHHTTCGGGC-----
T ss_pred -------CCchHHHHHHHCCCeEEEeecCCCcchHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 4679999999999999852 2 2478999999999999999987443
No 5
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=1.8e-14 Score=136.68 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=102.6
Q ss_pred CcEEEEEEEEecCCCeEEEEecCC----------------------eEEEEEEEeeeccCCCCchhHHHHHHHHHHHhcC
Q psy16181 234 KRIVKAVIDNINPGLTMRAFLLPD----------------------HYYVAFCLSGIKIVRENEEYGREVRQYLEERILQ 291 (480)
Q Consensus 234 ~k~l~aiVe~V~DGdtlrV~l~~~----------------------~~~I~V~LaGIdaPe~~ePfg~EAk~fl~~~LLq 291 (480)
+.-..|.|..|.+ +++.|++..- .+.+.++|+||++|+ .++|+.+|..++++++.+
T Consensus 66 ~~wyRa~V~~v~~-~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~-~~~w~~eA~~~l~~lv~~ 143 (218)
T 2wac_A 66 NQWYRAKVERVQG-SNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT-DNEDKEEALRAFSEDVLN 143 (218)
T ss_dssp CCEEEEEEEEEET-TEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS-SHHHHHHHHHHHHHHHBT
T ss_pred CeEEEEEEEEecC-CeEEEEEEecCCeEEEchHHcccCChhhccCCcceeEEEECCEECCC-CcchHHHHHHHHHHHhcC
Confidence 5678888888877 7787765421 245688999999998 789999999999999999
Q ss_pred CeEEEEEeeeecCCCCe-EEEEEEeCCCCCcHHHHHHhhCCeeeeeecCCCCCH--HHHHHHHHHHHHcccccCCCC
Q psy16181 292 RDVNVIIESVQNEKNRI-MNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDE--KKLREAEKLAQSERKRRWTNY 365 (480)
Q Consensus 292 R~V~V~l~~~d~Dk~gr-~lg~V~~~~~~~nIa~~LL~~GLA~v~~~~~~~~~~--~~l~~AE~~AK~~k~GlW~~~ 365 (480)
+.|.+.+...| +|+ .++.|+.+.++.||++.||++|||+++......... ..|.+||++||++|+|||+..
T Consensus 144 k~v~~~v~~~d---~g~~~~V~L~~~~~~~~in~~Lv~~G~A~~~~~~~~~~~~~~~~~~~~e~~Ar~~r~GlW~~g 217 (218)
T 2wac_A 144 HKVQLNVELKV---TGSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGERKLKELVDQYKAAQEAARVAHLAIWKYG 217 (218)
T ss_dssp CEEEEEEEECC---TTSCEEEEEECTTTCCBHHHHHHHTTSSEECCCCCGGGHHHHHHHHHHHHHHHHTTCGGGTTC
T ss_pred CEEEEEEEEEc---CCceEEEEEEeCCCCccHHHHHHHCCCcccccccchhHHHHHHHHHHHHHHHHHhcCCCcccC
Confidence 99999988865 688 999998853356999999999999986322222222 789999999999999999853
No 6
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=3.1e-13 Score=128.08 Aligned_cols=122 Identities=18% Similarity=0.125 Sum_probs=98.7
Q ss_pred CceeeEEEEEEeeCCEEEEEeCCCCCe---------------------eEEEEEeeecCCCCCCCCCCCCCCCCCCCCCh
Q psy16181 8 VIYRKGLVKFVNSGDSITLITDPKLRT---------------------EVTFLFTNVQAPKIARRPRADGPPSAQPEDEP 66 (480)
Q Consensus 8 ~~~~~g~V~~V~sGDti~v~~~~~~~~---------------------e~~v~l~~I~aP~~~~~~~~~~~~~~~~~~ep 66 (480)
..+.+|+|.+|.+ |++.|..-+.|.. -..++|++|++|+ +++
T Consensus 66 ~~wyRa~V~~v~~-~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~----------------~~~ 128 (218)
T 2wac_A 66 NQWYRAKVERVQG-SNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT----------------DNE 128 (218)
T ss_dssp CCEEEEEEEEEET-TEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS----------------SHH
T ss_pred CeEEEEEEEEecC-CeEEEEEEecCCeEEEchHHcccCChhhccCCcceeEEEECCEECCC----------------Ccc
Confidence 3588999999977 8888875443422 2366888888874 478
Q ss_pred hHHHHHHHHHhhhCCCEEEEEEeeccCCc-EEEEEEccCCCCccccccccccccchhhhhhhcccccccccccCcccccc
Q psy16181 67 YAWEAREFLRKLIIGKIVWYTAEKPEGNR-YYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFS 145 (480)
Q Consensus 67 ~a~eAre~Lr~~~iGk~V~~~~~~~~~~r-~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (480)
|+.+|+++|++++.|+.|.+.+.+...|+ .+++|+.+
T Consensus 129 w~~eA~~~l~~lv~~k~v~~~v~~~d~g~~~~V~L~~~------------------------------------------ 166 (218)
T 2wac_A 129 DKEEALRAFSEDVLNHKVQLNVELKVTGSPNLATLRDP------------------------------------------ 166 (218)
T ss_dssp HHHHHHHHHHHHHBTCEEEEEEEECCTTSCEEEEEECT------------------------------------------
T ss_pred hHHHHHHHHHHHhcCCEEEEEEEEEcCCceEEEEEEeC------------------------------------------
Confidence 99999999999999999999998865788 88888863
Q ss_pred cCcccchhhhhhccccccCCCCCcccHHHHHHhcCCeEeE-cc-------cchHHHHHHHHHHhCCCCCCCC
Q psy16181 146 CSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEGWVSLR-SK-------NPDLLDLENKAKEAGKGKYSTR 209 (480)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~lv~~G~a~v~-~~-------~~~l~~~E~~Ak~~~~Giws~~ 209 (480)
.++.||++.||++|||++. +. .+.|.++|++||++++|||+..
T Consensus 167 ---------------------~~~~~in~~Lv~~G~A~~~~~~~~~~~~~~~~~~~~e~~Ar~~r~GlW~~g 217 (218)
T 2wac_A 167 ---------------------TTKVDFGKQLVAEGLVLAEQRGERKLKELVDQYKAAQEAARVAHLAIWKYG 217 (218)
T ss_dssp ---------------------TTCCBHHHHHHHTTSSEECCCCCGGGHHHHHHHHHHHHHHHHTTCGGGTTC
T ss_pred ---------------------CCCccHHHHHHHCCCcccccccchhHHHHHHHHHHHHHHHHHhcCCCcccC
Confidence 1357899999999999996 21 1479999999999999999875
No 7
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=99.30 E-value=1e-12 Score=127.57 Aligned_cols=131 Identities=14% Similarity=0.198 Sum_probs=19.3
Q ss_pred CcEEEEEEEEecCCCeEEEEecC------------------------CeEEEEEEEeeeccCCCCchhHHHHHHHHHHHh
Q psy16181 234 KRIVKAVIDNINPGLTMRAFLLP------------------------DHYYVAFCLSGIKIVRENEEYGREVRQYLEERI 289 (480)
Q Consensus 234 ~k~l~aiVe~V~DGdtlrV~l~~------------------------~~~~I~V~LaGIdaPe~~ePfg~EAk~fl~~~L 289 (480)
+.-..|.|..|.+++++.|++.. ..+.+.++|+||+.|+. ++|+.+|..++.+++
T Consensus 79 ~~wyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v~~p~~-~~~~~eA~~~l~~lv 157 (246)
T 2hqx_A 79 GEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQD-DDARTDAVDSVVRDI 157 (246)
T ss_dssp SCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC-----------------------------
T ss_pred CCEEEEEEEEEcCCCeEEEEEEeCCCeEEEeHHHhhcCCHhHcCCCCchhhhhhhhhceecCCC-ccchHHHHHHHHHHh
Confidence 67788999998877888886532 13445789999999884 569999999999999
Q ss_pred cCCeEEEEEeeeecCCCCeEEEEEEeCCCCCcHHHHHHhhCCeeeeeecCC-CCC-HHHHHHHHHHHHHcccccCCCCCC
Q psy16181 290 LQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQG-VYD-EKKLREAEKLAQSERKRRWTNYTP 367 (480)
Q Consensus 290 LqR~V~V~l~~~d~Dk~gr~lg~V~~~~~~~nIa~~LL~~GLA~v~~~~~~-~~~-~~~l~~AE~~AK~~k~GlW~~~~~ 367 (480)
+++.+.+.++..+. |+.+++|+..+.+.||+++||++|||+++..... ... ...|.+||++||++|+|||+..++
T Consensus 158 ~~k~v~~~v~~~d~---g~~~v~L~~~~~~~~In~~LV~~GlA~~~~~~~~~~~~~~~~~~~~e~~Ar~~r~GlW~~gd~ 234 (246)
T 2hqx_A 158 QNTQCLLNVEHLSA---GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDF 234 (246)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCEEEEEEEEecC---CeEEEEEEeCCCCccHHHHHHHCCCEEecccchhhHHHHHHHHHHHHHHHHHhccCcccCCCC
Confidence 99999998887664 7788888874225689999999999999853221 111 278999999999999999986554
Q ss_pred C
Q psy16181 368 K 368 (480)
Q Consensus 368 ~ 368 (480)
.
T Consensus 235 ~ 235 (246)
T 2hqx_A 235 R 235 (246)
T ss_dssp -
T ss_pred C
Confidence 3
No 8
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=99.17 E-value=1.4e-11 Score=119.67 Aligned_cols=137 Identities=18% Similarity=0.107 Sum_probs=25.7
Q ss_pred CceeeEEEEEEeeCCEEEEEeCCCCCeeEEEEEeeecC----------CCCCCCCCCCCCCCCCCCCChhHHHHHHHHHh
Q psy16181 8 VIYRKGLVKFVNSGDSITLITDPKLRTEVTFLFTNVQA----------PKIARRPRADGPPSAQPEDEPYAWEAREFLRK 77 (480)
Q Consensus 8 ~~~~~g~V~~V~sGDti~v~~~~~~~~e~~v~l~~I~a----------P~~~~~~~~~~~~~~~~~~ep~a~eAre~Lr~ 77 (480)
..|.+|+|..|.+++++.|..-+.|. ...|.++.|+. |-.+...+-.+- ..+....|+-+|.++|++
T Consensus 79 ~~wyRa~V~~~~~~~~~~V~~vDyGn-~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v--~~p~~~~~~~eA~~~l~~ 155 (246)
T 2hqx_A 79 GEWYRARVEKVESPAKIHVFYIDYGN-REVLPSTRLGTLSPAFSTRVLPAQATEYAFAFI--QVPQDDDARTDAVDSVVR 155 (246)
T ss_dssp SCEEEEEEEEEEETTEEEEEETTTCC-EEEECGGGEECCCGGGSTTTSCCCC----------------------------
T ss_pred CCEEEEEEEEEcCCCeEEEEEEeCCC-eEEEeHHHhhcCCHhHcCCCCchhhhhhhhhce--ecCCCccchHHHHHHHHH
Confidence 35889999999999999998655553 23443333332 222211110000 001134699999999999
Q ss_pred hhCCCEEEEEEeeccCCcEEEEEEccCCCCccccccccccccchhhhhhhcccccccccccCcccccccCcccchhhhhh
Q psy16181 78 LIIGKIVWYTAEKPEGNRYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACM 157 (480)
Q Consensus 78 ~~iGk~V~~~~~~~~~~r~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (480)
++.|+.|.+.+++...++.+++||..
T Consensus 156 lv~~k~v~~~v~~~d~g~~~v~L~~~------------------------------------------------------ 181 (246)
T 2hqx_A 156 DIQNTQCLLNVEHLSAGCPHVTLQFA------------------------------------------------------ 181 (246)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCEEEEEEEEecCCeEEEEEEeC------------------------------------------------------
Confidence 99999999988875456667666653
Q ss_pred ccccccCCCCCcccHHHHHHhcCCeEeEcc--------cchHHHHHHHHHHhCCCCCCCCC
Q psy16181 158 FLFLRTEFPPTDDDITKLLISEGWVSLRSK--------NPDLLDLENKAKEAGKGKYSTRD 210 (480)
Q Consensus 158 ~~~~~~~~~~~~~nv~~~lv~~G~a~v~~~--------~~~l~~~E~~Ak~~~~Giws~~~ 210 (480)
.++.||++.||++|||++.+. .+.|.+||+.||++++|||+..+
T Consensus 182 ---------~~~~~In~~LV~~GlA~~~~~~~~~~~~~~~~~~~~e~~Ar~~r~GlW~~gd 233 (246)
T 2hqx_A 182 ---------DSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGD 233 (246)
T ss_dssp -------------------------------------------------------------
T ss_pred ---------CCCccHHHHHHHCCCEEecccchhhHHHHHHHHHHHHHHHHHhccCcccCCC
Confidence 135689999999999999753 23799999999999999998763
No 9
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=96.98 E-value=0.0049 Score=57.73 Aligned_cols=89 Identities=16% Similarity=0.093 Sum_probs=54.9
Q ss_pred ceeeEEEEEEeeCCEEEEEeCCCCCeeEEEEEeeecC--CCCCCCC------CCCCCCCCCCCCChhHHHHHHHHHhhhC
Q psy16181 9 IYRKGLVKFVNSGDSITLITDPKLRTEVTFLFTNVQA--PKIARRP------RADGPPSAQPEDEPYAWEAREFLRKLII 80 (480)
Q Consensus 9 ~~~~g~V~~V~sGDti~v~~~~~~~~e~~v~l~~I~a--P~~~~~~------~~~~~~~~~~~~ep~a~eAre~Lr~~~i 80 (480)
.|.+|+|.++.+.+.+.|..-+.|. ...|.+++|+. |++..-| .=.+ -.+.+..|..+|.+++++++.
T Consensus 81 ~wyRa~V~~~~~~~~~~V~~vDyG~-~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~---v~p~~~~w~~ea~~~f~~l~~ 156 (201)
T 4b9w_A 81 NWYRALVKEILPSGNVKVHFVDYGN-VEEVTTDQLQAILPQFLLLPFQGMQCWLVD---IQPPNKHWTKEATARFQACVV 156 (201)
T ss_dssp EEEEEEEEEECTTSCEEEEETTTCC-EEEECGGGEEECCGGGGSSCBCCEEEEESS---EECSSSSCCHHHHHHHHHHHT
T ss_pred eEEEEEEEEECCCCeEEEEEEccCC-EEEEEHHHhccChHhHcccchhhEEEEEcC---EEcCCCCCCHHHHHHHHHHHC
Confidence 5889999999988888887655553 33455555442 1121111 0000 001234588999999999999
Q ss_pred CCEEEEEEeeccCCcEEEEEE
Q psy16181 81 GKIVWYTAEKPEGNRYYGTLF 101 (480)
Q Consensus 81 Gk~V~~~~~~~~~~r~~g~v~ 101 (480)
||.+.+.+.....+.....++
T Consensus 157 ~k~l~~~V~~~~~~~~~V~L~ 177 (201)
T 4b9w_A 157 GLKLQARVVEITANGVGVELT 177 (201)
T ss_dssp TCCEEEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEEEeCCEEEEEEE
Confidence 999999887644443333444
No 10
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=96.92 E-value=0.0089 Score=55.96 Aligned_cols=95 Identities=13% Similarity=0.192 Sum_probs=71.5
Q ss_pred CcEEEEEEEEecCCCeEEEEecC----------------------CeEEEEEEEeeeccCCCCchhHHHHHHHHHHHhcC
Q psy16181 234 KRIVKAVIDNINPGLTMRAFLLP----------------------DHYYVAFCLSGIKIVRENEEYGREVRQYLEERILQ 291 (480)
Q Consensus 234 ~k~l~aiVe~V~DGdtlrV~l~~----------------------~~~~I~V~LaGIdaPe~~ePfg~EAk~fl~~~LLq 291 (480)
+.-..|+|..+.+.+.+.|++.. ..+-+.++|+||..+ ...|..+|..++++++.+
T Consensus 80 ~~wyRa~V~~~~~~~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea~~~f~~l~~~ 157 (201)
T 4b9w_A 80 GNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEATARFQACVVG 157 (201)
T ss_dssp TEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGEEECCGGGGSSCBCCEEEEESSEECS--SSSCCHHHHHHHHHHHTT
T ss_pred CeEEEEEEEEECCCCeEEEEEEccCCEEEEEHHHhccChHhHcccchhhEEEEEcCEEcC--CCCCCHHHHHHHHHHHCC
Confidence 56778999888887788886532 145678899999844 356999999999999999
Q ss_pred CeEEEEEeeeecCCCCeEEEEEEeCC--CCCcHHHHHHhhCCee
Q psy16181 292 RDVNVIIESVQNEKNRIMNATLIHEG--QKMNIGELLVREGFAS 333 (480)
Q Consensus 292 R~V~V~l~~~d~Dk~gr~lg~V~~~~--~~~nIa~~LL~~GLA~ 333 (480)
+.+.+.+.+.+. +.+.-.++... .+.+|+..|+++|||.
T Consensus 158 k~l~~~V~~~~~---~~~~V~L~d~~~~~~~~I~~~Lv~~gLA~ 198 (201)
T 4b9w_A 158 LKLQARVVEITA---NGVGVELTDLSTPYPKIISDVLIREQLVL 198 (201)
T ss_dssp CCEEEEEEEEET---TEEEEEEEECSSSSCEEHHHHHHHTTSSE
T ss_pred CEEEEEEEEEeC---CEEEEEEEECCCCCccchHHHHHHCcCee
Confidence 999999888765 33434455431 1347999999999994
No 11
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=96.91 E-value=0.0072 Score=57.69 Aligned_cols=92 Identities=14% Similarity=0.043 Sum_probs=56.8
Q ss_pred ceeeEEEEEEeeCCEEEEEeCCCCCeeEEEEEeeecCC--CCCCCCCCCCC---CCCCCCCChhHHHHHHHHHhhhCCCE
Q psy16181 9 IYRKGLVKFVNSGDSITLITDPKLRTEVTFLFTNVQAP--KIARRPRADGP---PSAQPEDEPYAWEAREFLRKLIIGKI 83 (480)
Q Consensus 9 ~~~~g~V~~V~sGDti~v~~~~~~~~e~~v~l~~I~aP--~~~~~~~~~~~---~~~~~~~ep~a~eAre~Lr~~~iGk~ 83 (480)
.|.+|+|..+.+.+.+.|..-+.|. ...|.+++|+.- ++..-|...-. ..-.+.+..|..+|.+++++++.||.
T Consensus 81 ~WyRa~V~~~~~~~~~~V~~vDyGn-~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~~~~w~~ea~~~f~~l~~~k~ 159 (226)
T 4b9x_A 81 NWYRALVKEILPSGNVKVHFVDYGN-VEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPPNKHWTKEATARFQACVVGLK 159 (226)
T ss_dssp EEEEEEEEEECSSSEEEEECTTTCC-EEEEEGGGEECCCGGGSSSCBCCEEEEESSEECSSSSCCHHHHHHHHHHHTTCC
T ss_pred eEEEEEEEEECCCCeEEEEEEecCC-EEEEEHHHhccChHHHcccccceEEEEEecEECCCCCCCHHHHHHHHHHHCCCe
Confidence 5889999999988888888655553 335666665531 22111100000 00001234588999999999999999
Q ss_pred EEEEEeeccCCcEEEEEE
Q psy16181 84 VWYTAEKPEGNRYYGTLF 101 (480)
Q Consensus 84 V~~~~~~~~~~r~~g~v~ 101 (480)
+.+.+.....+.....+|
T Consensus 160 l~~~V~~~~~~~~~V~L~ 177 (226)
T 4b9x_A 160 LQARVVEITANGVGVELT 177 (226)
T ss_dssp EEEEEEEECSSCEEEEEE
T ss_pred EEEEEEEEeCCeEEEEEE
Confidence 999887754444444444
No 12
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=96.79 E-value=0.011 Score=56.38 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=72.6
Q ss_pred CcEEEEEEEEecCCCeEEEEecC----------------------CeEEEEEEEeeeccCCCCchhHHHHHHHHHHHhcC
Q psy16181 234 KRIVKAVIDNINPGLTMRAFLLP----------------------DHYYVAFCLSGIKIVRENEEYGREVRQYLEERILQ 291 (480)
Q Consensus 234 ~k~l~aiVe~V~DGdtlrV~l~~----------------------~~~~I~V~LaGIdaPe~~ePfg~EAk~fl~~~LLq 291 (480)
+....|+|..+.+.+.+.|++.. ..+-+.++|+||..+ ...|..+|..++++++.+
T Consensus 80 ~~WyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea~~~f~~l~~~ 157 (226)
T 4b9x_A 80 GNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEATARFQACVVG 157 (226)
T ss_dssp TEEEEEEEEEECSSSEEEEECTTTCCEEEEEGGGEECCCGGGSSSCBCCEEEEESSEECS--SSSCCHHHHHHHHHHHTT
T ss_pred CeEEEEEEEEECCCCeEEEEEEecCCEEEEEHHHhccChHHHcccccceEEEEEecEECC--CCCCCHHHHHHHHHHHCC
Confidence 56778888888877788776532 145678999999844 356999999999999999
Q ss_pred CeEEEEEeeeecCCCCeEEEEEEeCCC--CCcHHHHHHhhCCeeee
Q psy16181 292 RDVNVIIESVQNEKNRIMNATLIHEGQ--KMNIGELLVREGFASCN 335 (480)
Q Consensus 292 R~V~V~l~~~d~Dk~gr~lg~V~~~~~--~~nIa~~LL~~GLA~v~ 335 (480)
+.+.+.+.+.+. +.+.-.++.... +.+|+..|+++|||...
T Consensus 158 k~l~~~V~~~~~---~~~~V~L~d~~~~~~~~I~~~Lv~~gla~~~ 200 (226)
T 4b9x_A 158 LKLQARVVEITA---NGVGVELTDLSTPYPKIISDVLIREQLVLRC 200 (226)
T ss_dssp CCEEEEEEEECS---SCEEEEEEECSSSSCEEHHHHHHHTTSSEEC
T ss_pred CeEEEEEEEEeC---CeEEEEEEECCCCCCccHHHHHHHCCCcccc
Confidence 999999988765 334334554321 34799999999999643
No 13
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=94.68 E-value=0.11 Score=47.34 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=65.1
Q ss_pred CcEEEEEEEEecCCCeEEEEecC--------------------CeEEEEEEEeeeccCCCCchhHHHHHHHHHHHhcCCe
Q psy16181 234 KRIVKAVIDNINPGLTMRAFLLP--------------------DHYYVAFCLSGIKIVRENEEYGREVRQYLEERILQRD 293 (480)
Q Consensus 234 ~k~l~aiVe~V~DGdtlrV~l~~--------------------~~~~I~V~LaGIdaPe~~ePfg~EAk~fl~~~LLqR~ 293 (480)
++...|.|..+.+++++.|++.. ..+-+.++|+||+.|.. ..+|..++++.++++.
T Consensus 62 ~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~lr~l~~~f~~lP~qA~~c~L~~v~~~~~----~~ea~~~f~~l~~~k~ 137 (169)
T 3ntk_A 62 EVFYRAQIRKVLDDGKCEVHFIDFGNNAVTQQFRQLPEELAKPARYSRHCELDASTISKC----DAALLQSFIDTRFSET 137 (169)
T ss_dssp TEEEEEEEEEECSTTCEEEEETTTTEEEEESCEECCCHHHHSSCCSSEEEEECGGGSCHH----HHHHHHHHHHTTTTSE
T ss_pred CcEEEEEEEEECCCCEEEEEEEecCCeEEhhhhhccCHHHhhCCceeEEEEECCcCCCCC----hHHHHHHHHHHhCCCe
Confidence 67788999998877777776532 13456788899986642 8899999999999999
Q ss_pred EEEEEeeeecCCCCeEE-EEEEeCCCCCcHHHHH
Q psy16181 294 VNVIIESVQNEKNRIMN-ATLIHEGQKMNIGELL 326 (480)
Q Consensus 294 V~V~l~~~d~Dk~gr~l-g~V~~~~~~~nIa~~L 326 (480)
+.+.++.... |... ..|+.+ +++||+.|
T Consensus 138 l~~~V~~~~~---~~~~~V~L~~~--~~~in~~L 166 (169)
T 3ntk_A 138 FQVEILATKG---TGTHVVRLFYQ--SKNISEKL 166 (169)
T ss_dssp EEEEEEEECT---TSCEEEEEEET--TEEHHHHC
T ss_pred EEEEEEEecC---CCCEEEEEEEC--CCCHHHHh
Confidence 9999988643 4444 788888 78999886
No 14
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=91.11 E-value=1 Score=40.81 Aligned_cols=88 Identities=9% Similarity=0.030 Sum_probs=56.1
Q ss_pred CceeeEEEEEEeeCCEEEEEeCCCCCeeEEEEEeeecC--------CCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhhh
Q psy16181 8 VIYRKGLVKFVNSGDSITLITDPKLRTEVTFLFTNVQA--------PKIARRPRADGPPSAQPEDEPYAWEAREFLRKLI 79 (480)
Q Consensus 8 ~~~~~g~V~~V~sGDti~v~~~~~~~~e~~v~l~~I~a--------P~~~~~~~~~~~~~~~~~~ep~a~eAre~Lr~~~ 79 (480)
..|++|+|.++.+++++.|..-..|+.+. ++.|+. |-.+.+++=.+ ..++. ...+|.+++++++
T Consensus 62 ~~wyRa~I~~~~~~~~~~V~fvDyGn~~~---v~~lr~l~~~f~~lP~qA~~c~L~~---v~~~~--~~~ea~~~f~~l~ 133 (169)
T 3ntk_A 62 EVFYRAQIRKVLDDGKCEVHFIDFGNNAV---TQQFRQLPEELAKPARYSRHCELDA---STISK--CDAALLQSFIDTR 133 (169)
T ss_dssp TEEEEEEEEEECSTTCEEEEETTTTEEEE---ESCEECCCHHHHSSCCSSEEEEECG---GGSCH--HHHHHHHHHHHTT
T ss_pred CcEEEEEEEEECCCCEEEEEEEecCCeEE---hhhhhccCHHHhhCCceeEEEEECC---cCCCC--ChHHHHHHHHHHh
Confidence 35889999999988878887665664443 355543 21111111000 00011 1789999999999
Q ss_pred CCCEEEEEEeeccCCcEE-EEEEcc
Q psy16181 80 IGKIVWYTAEKPEGNRYY-GTLFYP 103 (480)
Q Consensus 80 iGk~V~~~~~~~~~~r~~-g~v~~~ 103 (480)
.||++.+.+++...+-.+ ..+|.+
T Consensus 134 ~~k~l~~~V~~~~~~~~~~V~L~~~ 158 (169)
T 3ntk_A 134 FSETFQVEILATKGTGTHVVRLFYQ 158 (169)
T ss_dssp TTSEEEEEEEEECTTSCEEEEEEET
T ss_pred CCCeEEEEEEEecCCCCEEEEEEEC
Confidence 999999999985444445 788764
No 15
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=61.36 E-value=18 Score=26.81 Aligned_cols=38 Identities=24% Similarity=0.207 Sum_probs=32.2
Q ss_pred ceeeEEEEEEEe-CCEEEEEEcCCCceEEEEeccCCCCC
Q psy16181 372 KERAAVVLEIIN-GDGLVIKYVGDTKEEKVFLSSIKPPR 409 (480)
Q Consensus 372 k~~~g~VveVis-gd~l~V~~~~~g~~~rV~Lssir~pr 409 (480)
.=|.++|.+|.. ++++.|...+=|....|.++.||++.
T Consensus 19 ~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 19 CIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPI 57 (59)
T ss_dssp CEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTT
T ss_pred CEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCC
Confidence 468999999976 58899999855888999999999875
No 16
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=48.70 E-value=20 Score=25.99 Aligned_cols=36 Identities=36% Similarity=0.419 Sum_probs=28.5
Q ss_pred ceeeEEEEEEEe-CCEEEEEEcCCCceEEEEeccCCC
Q psy16181 372 KERAAVVLEIIN-GDGLVIKYVGDTKEEKVFLSSIKP 407 (480)
Q Consensus 372 k~~~g~VveVis-gd~l~V~~~~~g~~~rV~Lssir~ 407 (480)
+=|.++|.+|.. ++.+.|...+-|....|.++.|||
T Consensus 17 ~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lrp 53 (54)
T 3s6w_A 17 KFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKP 53 (54)
T ss_dssp EEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGGEEC
T ss_pred CEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHHEEE
Confidence 457999999975 577888888558888999999886
No 17
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=41.66 E-value=25 Score=27.37 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=32.9
Q ss_pred ceeeEEEEEEEeCCEEEEEEcCCCceEEEEeccCCCCCC
Q psy16181 372 KERAAVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPRP 410 (480)
Q Consensus 372 k~~~g~VveVisgd~l~V~~~~~g~~~rV~Lssir~pr~ 410 (480)
+-|.++|++|...+++.|... ||...++.++.|++...
T Consensus 21 ~yYpA~I~si~~~~~Y~V~F~-dG~~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 21 RFYPAKVTAVNKDGTYTVKFY-DGVVQTVKHIHVKAFSK 58 (67)
T ss_dssp CEEEEEEEEECTTSEEEEEET-TSCEEEEEGGGEEECC-
T ss_pred CEeeEEEEEECCCCeEEEEEe-CCceEEEeHHHcccCCc
Confidence 468999999999999999998 59999999999977654
No 18
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=38.94 E-value=52 Score=26.74 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=32.4
Q ss_pred ceeeEEEEEEEe-CCEEEEEEcCCCceEEEEeccCCCCCC
Q psy16181 372 KERAAVVLEIIN-GDGLVIKYVGDTKEEKVFLSSIKPPRP 410 (480)
Q Consensus 372 k~~~g~VveVis-gd~l~V~~~~~g~~~rV~Lssir~pr~ 410 (480)
.-|.++|.+|.. ++++.|...+=|....|.++.|||+-.
T Consensus 26 ~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~~~ 65 (88)
T 1g5v_A 26 CIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 65 (88)
T ss_dssp CEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCCC-
T ss_pred CEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccCCh
Confidence 468999999986 588999988558888999999998754
No 19
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=36.96 E-value=46 Score=25.04 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=31.0
Q ss_pred ceeeEEEEEEEe-CCEEEEEEcCCCceEEEEeccCCCC
Q psy16181 372 KERAAVVLEIIN-GDGLVIKYVGDTKEEKVFLSSIKPP 408 (480)
Q Consensus 372 k~~~g~VveVis-gd~l~V~~~~~g~~~rV~Lssir~p 408 (480)
+=|.++|.+|.. .+.+.|...+-|....|.+++||+.
T Consensus 24 ~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lrpl 61 (64)
T 4a4f_A 24 QCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPV 61 (64)
T ss_dssp SEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEECC
T ss_pred CEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcEeC
Confidence 467999999997 4788898885588889999999874
No 20
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=36.70 E-value=32 Score=28.08 Aligned_cols=39 Identities=18% Similarity=0.133 Sum_probs=33.3
Q ss_pred ceeeEEEEEEEeCCEEEEEEcCCCceEEEEeccCCCCCCC
Q psy16181 372 KERAAVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPRPD 411 (480)
Q Consensus 372 k~~~g~VveVisgd~l~V~~~~~g~~~rV~Lssir~pr~~ 411 (480)
+-|.++|++|...+++.|+.. ||....+..+.|+|...+
T Consensus 36 ~yYPAkI~sV~~~~~YtV~F~-DG~~etvk~~~IKp~~~~ 74 (85)
T 3qii_A 36 RFYPAKVTAVNKDGTYTVKFY-DGVVQTVKHIHVKAFSKD 74 (85)
T ss_dssp CEEEEEEEEECTTSEEEEEET-TSCEEEEEGGGEEECC--
T ss_pred CEeeEEEEEECCCCeEEEEEe-CCCeEEecHHHcccCChh
Confidence 468999999999999999998 599999999999876543
No 21
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=31.34 E-value=67 Score=27.97 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=30.7
Q ss_pred ceeeEEEEEEEeCCEEEEEEcCC-CceEEEEeccCCCCCCC
Q psy16181 372 KERAAVVLEIINGDGLVIKYVGD-TKEEKVFLSSIKPPRPD 411 (480)
Q Consensus 372 k~~~g~VveVisgd~l~V~~~~~-g~~~rV~Lssir~pr~~ 411 (480)
.=|.|+|..| ..|.+.|...++ ..+.+|.++.||+|.+.
T Consensus 16 ~~y~a~V~~v-~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~ 55 (128)
T 3h8z_A 16 AFYKGFVKDV-HEDSVTIFFENNWQSERQIPFGDVRLPPPA 55 (128)
T ss_dssp CEEEEEEEEE-CSSEEEEEETTCTTCCEEEEGGGEECCCCC
T ss_pred CEEEEEEEEE-eCCcEEEEEccccCcceEechhhEEcCCCc
Confidence 3579999885 688899999743 33799999999987754
No 22
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=30.66 E-value=57 Score=25.60 Aligned_cols=39 Identities=33% Similarity=0.359 Sum_probs=32.5
Q ss_pred ceeeEEEEEEEe-CCEEEEEEcCCCceEEEEeccCCCCCC
Q psy16181 372 KERAAVVLEIIN-GDGLVIKYVGDTKEEKVFLSSIKPPRP 410 (480)
Q Consensus 372 k~~~g~VveVis-gd~l~V~~~~~g~~~rV~Lssir~pr~ 410 (480)
+=|+++|++|.. ++.+.|+..+=|....|.++.||+...
T Consensus 25 ~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~ 64 (78)
T 2d9t_A 25 KFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQT 64 (78)
T ss_dssp CEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred CEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCH
Confidence 467999999986 578999998558899999999987654
No 23
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=30.47 E-value=55 Score=25.73 Aligned_cols=38 Identities=34% Similarity=0.387 Sum_probs=30.6
Q ss_pred ceeeEEEEEEEe-CCEEEEEEcCCCceEEEEeccCCCCC
Q psy16181 372 KERAAVVLEIIN-GDGLVIKYVGDTKEEKVFLSSIKPPR 409 (480)
Q Consensus 372 k~~~g~VveVis-gd~l~V~~~~~g~~~rV~Lssir~pr 409 (480)
.=|+++|++|.. ++.+.|...+-|....|.++.||+-.
T Consensus 33 ~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~ 71 (77)
T 3pnw_C 33 KFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQ 71 (77)
T ss_dssp EEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC-
T ss_pred CEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECC
Confidence 467999999975 56788888856888899999998754
No 24
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=25.60 E-value=1.2e+02 Score=26.01 Aligned_cols=40 Identities=15% Similarity=0.072 Sum_probs=31.1
Q ss_pred hhhhhhhcCcEEE--EEEEEec-CCCeEEEEecCCeEEEEEEEe
Q psy16181 226 KQVLDKFGKRIVK--AVIDNIN-PGLTMRAFLLPDHYYVAFCLS 266 (480)
Q Consensus 226 ~~~l~~~k~k~l~--aiVe~V~-DGdtlrV~l~~~~~~I~V~La 266 (480)
.++|.++.|+++. |.|+++. +|+++.+.. .++..|+|.|.
T Consensus 14 ~s~L~~fvgk~VrivGkV~~~~~~g~~~~l~s-~Dg~~Vtv~l~ 56 (121)
T 3kdf_A 14 AGMLAQFIDKPVCFVGRLEKIHPTGKMFILSD-GEGKNGTIELM 56 (121)
T ss_dssp GGGGGGGTTCEEEEEEEEEEECTTSSEEEEEC-TTSCEEEEECS
T ss_pred HHHHHhhCCCeEEEEEEEEEEcCCCCEEEEEe-CCCCEEEEEeC
Confidence 4678888888855 7799998 799998864 45678888774
No 25
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.83 E-value=56 Score=25.69 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=31.4
Q ss_pred ceeeEEEEEEEeCCEEEEEEcCCCceEEEEeccCCCCCC
Q psy16181 372 KERAAVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPRP 410 (480)
Q Consensus 372 k~~~g~VveVisgd~l~V~~~~~g~~~rV~Lssir~pr~ 410 (480)
.-|.++|.+|...++..|... |+....+.++.||+...
T Consensus 24 ~~Y~A~I~~v~~~~~~~V~f~-Dyn~e~v~~~~lrplp~ 61 (74)
T 2equ_A 24 RYYPAKIEAINKEGTFTVQFY-DGVIRCLKRMHIKAMPE 61 (74)
T ss_dssp SEEEEEEEEESTTSSEEEEET-TSCEEEECGGGEECCCG
T ss_pred CEEEEEEEEECCCCEEEEEEe-cCCeEEecHHHCeeCCh
Confidence 468999999977678888888 56888999999987654
No 26
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=20.05 E-value=1.4e+02 Score=21.74 Aligned_cols=38 Identities=3% Similarity=-0.006 Sum_probs=29.6
Q ss_pred CceeeEEEEEEee-CCEEEEEeCCCCCeeEEEEEeeecCC
Q psy16181 8 VIYRKGLVKFVNS-GDSITLITDPKLRTEVTFLFTNVQAP 46 (480)
Q Consensus 8 ~~~~~g~V~~V~s-GDti~v~~~~~~~~e~~v~l~~I~aP 46 (480)
..+.+|+|.+|.. ++++.|.....| ....|.+++|+.+
T Consensus 18 g~wYrA~I~~i~~~~~~~~V~f~DYG-n~e~v~~~~Lr~~ 56 (59)
T 1mhn_A 18 GCIYPATIASIDFKRETCVVVYTGYG-NREEQNLSDLLSP 56 (59)
T ss_dssp SCEEEEEEEEEETTTTEEEEEETTTT-EEEEEEGGGCBCT
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEcCC-CEEEEcHHHeeCC
Confidence 3588999999986 689999886656 4557888888754
Done!