RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16181
         (480 letters)



>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 136

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 13/133 (9%)

Query: 237 VKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIK------IVRENEEYGREVRQYLEERIL 290
           +   ID    G T++  L+     + F L  +         +  E+YG E   + ++ + 
Sbjct: 9   LIKAID----GDTVK--LMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVE 62

Query: 291 QRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTL-LQGVYDEKKLRE 349
                 +        ++              + E LVR+G A    +       E+ LR+
Sbjct: 63  NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRK 122

Query: 350 AEKLAQSERKRRW 362
           +E  A+ E+   W
Sbjct: 123 SEAQAKKEKLNIW 135



 Score = 29.5 bits (65), Expect = 0.41
 Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 18/97 (18%)

Query: 376 AVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKAPVVRSKPLYDVP 435
           A +++ I+GD + + Y    +     L  +                  P  +        
Sbjct: 7   ATLIKAIDGDTVKLMY--KGQPMTFRLLLV----------------DTPETKHPKKGVEK 48

Query: 436 WLYEAREFLRTRLIGKKVMVSEDYAQDARDKFPEKKC 472
           +  EA  F +  +   K +  E       DK+     
Sbjct: 49  YGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLA 85


>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein
           TDRKH {Human (Homo sapiens) [TaxId: 9606]}
          Length = 97

 Score = 26.0 bits (57), Expect = 3.8
 Identities = 8/36 (22%), Positives = 13/36 (36%)

Query: 376 AVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPRPD 411
           A VL  +    L + +V         L  ++  R D
Sbjct: 45  ARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSD 80


>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 60

 Score = 24.8 bits (54), Expect = 4.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 374 RAAVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPRPDG 412
           RA V     +G   V+K+      E+V LS+IKP + + 
Sbjct: 21  RAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTEA 59


>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP
           {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
          Length = 171

 Score = 26.2 bits (57), Expect = 7.6
 Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 1/81 (1%)

Query: 163 TEFPPTDDDITKLLISEGWVSLRSKNPDLLDLENKAKEAGKGKYSTRDEPSAHVRSINWD 222
           T+F   + D  KL I   W   +        L  +              P+   +SI   
Sbjct: 1   TDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTD-KKSITDF 59

Query: 223 PEPKQVLDKFGKRIVKAVIDN 243
             P+Q L +    + +     
Sbjct: 60  GSPEQFLSQVDYLLGRQAYSG 80


>d1p5dx1 c.84.1.1 (X:9-154) Phosphomannomutase/phosphoglucomutase
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 146

 Score = 25.5 bits (55), Expect = 8.8
 Identities = 20/68 (29%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 233 GKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLS-------GIKIVRENEEYGREVRQYL 285
               V  V     P L   A +L     V    S       G KIV   E    E  Q L
Sbjct: 67  CGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGSHNPPDYNGFKIVVAGETLANEQIQAL 126

Query: 286 EERILQRD 293
            ERI + D
Sbjct: 127 RERIEKND 134


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,854,818
Number of extensions: 91549
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 8
Length of query: 480
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 391
Effective length of database: 1,185,626
Effective search space: 463579766
Effective search space used: 463579766
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)