BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16184
(363 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P17133|RU17_DROME U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila
melanogaster GN=snRNP-U1-70K PE=1 SV=2
Length = 448
Score = 300 bits (769), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 169/211 (80%), Positives = 194/211 (91%)
Query: 1 MTQFLPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKDTPPPTRVE 60
MTQ+LPPNLLALFA R+P+P++PPV+KLPHEKK+ GY G+A F+ +FEDPKDTP P VE
Sbjct: 1 MTQYLPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKDTPLPKTVE 60
Query: 61 TREERLERRRRERAEQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRR 120
TR+ERLERRRRE+AEQVAYKLE+EIALWDP NAT DPF+TLFIAR+NYDTSESKLRR
Sbjct: 61 TRQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRR 120
Query: 121 EFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180
EFE YGPIKKIV++H++ +GKP+GYAFIEYEHERDMH+AYKHADGKKID +RVLVDVER+
Sbjct: 121 EFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERA 180
Query: 181 RTVKGWLPRRLGGGLGGTRRGGPDVNLKHSG 211
RTVKGWLPRRLGGGLGGTRRGG DVN+KHSG
Sbjct: 181 RTVKGWLPRRLGGGLGGTRRGGNDVNIKHSG 211
>sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus
GN=Snrnp70 PE=1 SV=2
Length = 448
Score = 284 bits (727), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 169/222 (76%), Positives = 193/222 (86%), Gaps = 1/222 (0%)
Query: 1 MTQFLPPNLLALFAPRDPVPYLPPVEKLPHEK-KTHGYSGIAAFLNEFEDPKDTPPPTRV 59
MTQFLPPNLLALFAPRDP+PYLPP+EKLPHEK Y GIA ++ EFEDP+D PPPTR
Sbjct: 1 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA 60
Query: 60 ETREERLERRRRERAEQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
ETREER+ER+RRE+ E+ ++E E+ +WDP++ PNA D FKTLF+ARVNYDT+ESKLR
Sbjct: 61 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR 120
Query: 120 REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179
REFEVYGPIK+I MV++K +GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
Sbjct: 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180
Query: 180 SRTVKGWLPRRLGGGLGGTRRGGPDVNLKHSGREDNERERER 221
RTVKGW PRRLGGGLGGTRRGG DVN++HSGR+D R ER
Sbjct: 181 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDER 222
>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens
GN=SNRNP70 PE=1 SV=2
Length = 437
Score = 284 bits (727), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 169/222 (76%), Positives = 193/222 (86%), Gaps = 1/222 (0%)
Query: 1 MTQFLPPNLLALFAPRDPVPYLPPVEKLPHEK-KTHGYSGIAAFLNEFEDPKDTPPPTRV 59
MTQFLPPNLLALFAPRDP+PYLPP+EKLPHEK Y GIA ++ EFEDP+D PPPTR
Sbjct: 1 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA 60
Query: 60 ETREERLERRRRERAEQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
ETREER+ER+RRE+ E+ ++E E+ +WDP++ PNA D FKTLF+ARVNYDT+ESKLR
Sbjct: 61 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR 120
Query: 120 REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179
REFEVYGPIK+I MV++K +GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
Sbjct: 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180
Query: 180 SRTVKGWLPRRLGGGLGGTRRGGPDVNLKHSGREDNERERER 221
RTVKGW PRRLGGGLGGTRRGG DVN++HSGR+D R ER
Sbjct: 181 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDER 222
>sp|Q1RMR2|RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70
PE=2 SV=1
Length = 439
Score = 283 bits (725), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 169/222 (76%), Positives = 193/222 (86%), Gaps = 1/222 (0%)
Query: 1 MTQFLPPNLLALFAPRDPVPYLPPVEKLPHEKK-THGYSGIAAFLNEFEDPKDTPPPTRV 59
MTQFLPPNLLALFAPRDP+PYLPP+EKLPHEK Y GIA ++ EFEDP+D PPPTR
Sbjct: 1 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA 60
Query: 60 ETREERLERRRRERAEQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
ETREER+ER+RRE+ E+ ++E E+ +WDP++ PNA D FKTLF+ARVNYDT+ESKLR
Sbjct: 61 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR 120
Query: 120 REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179
REFEVYGPIK+I MV++K +GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
Sbjct: 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180
Query: 180 SRTVKGWLPRRLGGGLGGTRRGGPDVNLKHSGREDNERERER 221
RTVKGW PRRLGGGLGGTRRGG DVN++HSGR+D R ER
Sbjct: 181 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDER 222
>sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 167/218 (76%), Positives = 189/218 (86%), Gaps = 1/218 (0%)
Query: 1 MTQFLPPNLLALFAPRDPVPYLPPVEKLPHEKK-THGYSGIAAFLNEFEDPKDTPPPTRV 59
MTQFLPPNLLALFAPRDPVPYLPP++KLPHEK Y GIA ++ EFEDP+D PPPTR
Sbjct: 1 MTQFLPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA 60
Query: 60 ETREERLERRRRERAEQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
ETREER+ER+RRE+ E+ +E E+ +WDP++ NA D FKTLF+ARVNYDT+ESKLR
Sbjct: 61 ETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLR 120
Query: 120 REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179
REFEVYGPIK+I MV+NK +GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
Sbjct: 121 REFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180
Query: 180 SRTVKGWLPRRLGGGLGGTRRGGPDVNLKHSGREDNER 217
RTVKGW PRRLGGGLGGTRRGG DVN++HSGR+D R
Sbjct: 181 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSR 218
>sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 278 bits (710), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 166/221 (75%), Positives = 189/221 (85%), Gaps = 4/221 (1%)
Query: 1 MTQFLPPNLLALFAPRDPVPYLPPVEKLPHEKK-THGYSGIAAFLNEFEDPKDTPPPTRV 59
MTQFLPPNLLALFAPRDPVPYLPP++KLPHEK Y GIA ++ EFEDP+D PPPTR
Sbjct: 1 MTQFLPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA 60
Query: 60 ETREERLERRRRERAEQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
ETREER+ER+RRE+ E+ +E E+ +WDP++ NA D FKTLF+ARVNYDT+ESKLR
Sbjct: 61 ETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLR 120
Query: 120 REFEVYGPIKKIVMVHNKVT---GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
REFEVYGPIK+I +V+NK + GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD
Sbjct: 121 REFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 180
Query: 177 VERSRTVKGWLPRRLGGGLGGTRRGGPDVNLKHSGREDNER 217
VER RTVKGW PRRLGGGLGGTRRGG DVN++HSGR+D R
Sbjct: 181 VERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSR 221
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 232 bits (591), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/272 (49%), Positives = 175/272 (64%), Gaps = 14/272 (5%)
Query: 5 LPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKD---TPPPTRVET 61
L NLL LF PR P+ Y PP EK +K Y+G+A F++ F +P D PP VE
Sbjct: 42 LTNNLLKLFEPRPPLEYKPPPEK----RKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVEL 97
Query: 62 REERLERRRRERAEQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRRE 121
++ ER + R E+ K +++ +DPN+ PNAT DP+KTLF++R+NY++SESK++RE
Sbjct: 98 PSQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKRE 157
Query: 122 FEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSR 181
FE YGPIK++ +V +++T KP+GYAFIEY H RDM +AYK ADG+KIDGRRVLVDVER R
Sbjct: 158 FESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGR 217
Query: 182 TVKGWLPRRLGGGLGGTRRGGPDVNL---KHSGREDNERERERYRLERERELAGGPPRAR 238
TV W PRRLGGGLG +R GG + + + GR E R R ERE+ G R R
Sbjct: 218 TVPNWRPRRLGGGLGTSRVGGGEEIVGEQQPQGRTSQSEEPSRPREEREKSREKGKERER 277
Query: 239 SGSNDRERERERRRSRSRERKRRTSRSRSRDR 270
S RE E+ R RSR+R R R RD+
Sbjct: 278 S----RELSHEQPRERSRDRPREDKHHRDRDQ 305
>sp|Q55FQ0|RU17_DICDI U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium
discoideum GN=snrnp70 PE=3 SV=1
Length = 459
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 133/216 (61%), Gaps = 7/216 (3%)
Query: 4 FLPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKDTPPPTR--VET 61
FLPPNL +F PR P P P Y+G+ +L+ F DP + P + +E
Sbjct: 3 FLPPNLKIMFNPRHPPP----FLPPPPPSNLPPYTGLRDYLSIFTDPSNEEPFKKEHIEN 58
Query: 62 REERLERRRRERAEQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRRE 121
EE+ E++R+ + + ++ + + WDP S T DP+KT+F++R++Y T++ KL E
Sbjct: 59 LEEKREKKRKLKISENDERISKSLKAWDPYSNSETTGDPYKTIFVSRISYKTTQQKLEFE 118
Query: 122 FEVYGPIKKIVMVHNKVTG-KPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180
F +GPIK + +V + K GYAFIE+E ERDM +AYK ADG KID RR++VD+ER
Sbjct: 119 FGQFGPIKSLFLVKDSNNPEKHTGYAFIEFERERDMKAAYKQADGMKIDDRRIVVDIERG 178
Query: 181 RTVKGWLPRRLGGGLGGTRRGGPDVNLKHSGREDNE 216
R +K W PR+ GGGLG TR GG DVN SGRE +E
Sbjct: 179 RVIKNWKPRKFGGGLGNTRAGGVDVNQTFSGREMSE 214
>sp|O13829|RU17_SCHPO U1 small nuclear ribonucleoprotein 70 kDa homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=usp101 PE=1 SV=1
Length = 261
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/190 (48%), Positives = 127/190 (66%), Gaps = 2/190 (1%)
Query: 1 MTQFLPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKDTPPPTRVE 60
M + LP LLALFAPR P+ YLPP++ P ++ T SGIA +L + PT E
Sbjct: 1 MAEKLPAPLLALFAPRPPLRYLPPMDVPPEKRSTPRVSGIAKYLKYAQSHDQQYHPT--E 58
Query: 61 TREERLERRRRERAEQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRR 120
+ EE+ R R E+ +Q +L I +WDP+ + DP+KT+F++R++YDT ES + R
Sbjct: 59 SLEEKRLRLRDEKQKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIER 118
Query: 121 EFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180
EF YGPI++I +V NKVTGK GYAF+ +E ERD+ AYK + G ++GRR++VDVER
Sbjct: 119 EFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDVERG 178
Query: 181 RTVKGWLPRR 190
RTVKGWLPR+
Sbjct: 179 RTVKGWLPRK 188
>sp|Q1LZH0|U1SBP_BOVIN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos
taurus GN=SNRNP35 PE=2 SV=1
Length = 245
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+A + PN T DP TLF+AR+N T E KL+ F YG I+++ +V + VTG +G
Sbjct: 36 LARYTPNK--GVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKG 93
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVKGWLPR 189
YAFIEY+ ER + AY+ ADG ID + VD E RT+KGW+PR
Sbjct: 94 YAFIEYKDERSLLKAYRDADGLVIDQHEIFVDYELERTLKGWIPR 138
>sp|Q9D384|U1SBP_MOUSE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus
musculus GN=Snrnp35 PE=2 SV=1
Length = 244
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 63/96 (65%)
Query: 95 NATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHER 154
T DP TLF+AR+N T E KL+ F YG I+++ +V + VTG +GYAFIEY+ ER
Sbjct: 44 GVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEER 103
Query: 155 DMHSAYKHADGKKIDGRRVLVDVERSRTVKGWLPRR 190
+ AY+ ADG ID + VD E RT++GW+PRR
Sbjct: 104 ALMKAYRDADGLVIDQHEIFVDYELERTLRGWIPRR 139
>sp|Q16560|U1SBP_HUMAN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo
sapiens GN=SNRNP35 PE=1 SV=1
Length = 246
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+A + PN DP TLF+AR+N T E KL+ F YG I+++ +V + VTG +G
Sbjct: 36 LARYVPNK--GVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKG 93
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVKGWLPR 189
YAFIEY+ ER + AY+ ADG ID + VD E RT+KGW+PR
Sbjct: 94 YAFIEYKEERAVIKAYRDADGLVIDQHEIFVDYELERTLKGWIPR 138
>sp|Q5U1W5|U1SBP_RAT U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus
norvegicus GN=Snrnp35 PE=2 SV=1
Length = 244
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 63/96 (65%)
Query: 95 NATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHER 154
T DP TLF+AR+N T E KL+ F YG I+++ +V + VTG +GYAFIEY+ ER
Sbjct: 44 GVTGDPLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEER 103
Query: 155 DMHSAYKHADGKKIDGRRVLVDVERSRTVKGWLPRR 190
+ AY+ ADG ID + VD E RT++GW+PRR
Sbjct: 104 ALLKAYRDADGLVIDQHEIFVDYELERTLRGWIPRR 139
>sp|Q05AT9|U1SBP_XENLA U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Xenopus
laevis GN=snrnp35 PE=2 SV=1
Length = 272
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 81 LEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTG 140
L ++ + PN T DP TLF++R++ T+E KL+ F YG IK+I +V + +TG
Sbjct: 32 LRAMLSRYVPNK--GVTGDPHLTLFVSRLSPQTTEEKLKEVFSRYGDIKRIRLVRDFITG 89
Query: 141 KPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVKGWLPR 189
+GYAFIEY+ E + A++ A+ ID R V VD E R +KGW+PR
Sbjct: 90 FSKGYAFIEYKQENAIMKAHRDANKLVIDQREVFVDFELERNLKGWIPR 138
>sp|Q4KMD3|U1SBP_DANRE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio
rerio GN=snrnp35 PE=2 SV=1
Length = 208
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+A + PN DP TLF+AR+N T+E KLR F +G I+++ +V + VTG +
Sbjct: 35 LARYKPNR--GVCGDPDLTLFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKR 92
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVKGWLPRRL 191
YAFIEY+ ER + A++ A+ +D +LVDVE+ RT+ GW PRRL
Sbjct: 93 YAFIEYKEERSLKRAWRDANKLILDQYELLVDVEQERTLPGWRPRRL 139
>sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SNP1 PE=1
SV=1
Length = 300
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 21/190 (11%)
Query: 12 LFAPRDPVPYLPPVEKLPHEKKTH-GYSGIAAFLNEF------EDPKDTPPPTRVETREE 64
LF PR P+ Y P + +++T+ +G+A L+ E P+ +P
Sbjct: 15 LFKPRPPLSYKRPTDYPYAKRQTNPNITGVANLLSTSLKHYMEEFPEGSP--------NN 66
Query: 65 RLERRRRERAEQV--AYKLEQEIALWDPNSFPNAT-MDPFKTLFIARVNYDTSESKLRRE 121
L+R + ++ A L++ + W+PN P+ DP++T+FI R+ YD E +L++
Sbjct: 67 HLQRYEDIKLSKIKNAQLLDRRLQNWNPNVDPHIKDTDPYRTIFIGRLPYDLDEIELQKY 126
Query: 122 FEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD---GKKIDGRRVLVDVE 178
F +G I+KI +V +K+T K +GYAFI ++ A+K G +I R +VD+E
Sbjct: 127 FVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEIGVHRGIQIKDRICIVDIE 186
Query: 179 RSRTVKGWLP 188
R RTVK + P
Sbjct: 187 RGRTVKYFKP 196
>sp|Q2U256|PPIL4_ASPOR Peptidyl-prolyl cis-trans isomerase-like 4 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=cyp6 PE=3 SV=1
Length = 461
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 104/228 (45%), Gaps = 20/228 (8%)
Query: 63 EERLERRRRERAEQVAYKLEQEIALWDPNSFPNATMDPFK-TLFIARVNYDTSESKLRRE 121
EE +E+ RRER + Q + L P A + P + LF+ ++N T + L
Sbjct: 213 EESMEKLRREREARA-----QALTLEMVGDLPFAEVKPPENVLFVCKLNPVTQDEDLHLI 267
Query: 122 FEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER-- 179
F +G I ++ +K TG YAFIE+E+++D AY G ID R+ VD +
Sbjct: 268 FSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLIDDHRIHVDFSQSV 327
Query: 180 SRTVKGW----LPRRLG--GGLGGTRRGGPDVNLKHSGREDNERERER-YRLERERELAG 232
S+ + W + +R G GG GG + S DN RE+E Y L ++
Sbjct: 328 SKLSESWRNATISKRSGQRGGFGGVASLEKKRQYRAS---DNAREKENDYTLVFDKGDKA 384
Query: 233 GPPRARSGSNDRERERERRRSRS--RERKRRTSRSRSRDRRRRRSRER 278
R+ S S R R+RR SRS R+ R R R DR RS R
Sbjct: 385 PRRRSYSRSPQRSSNRDRRASRSPRRDSYRDPYRRRPGDRSHSRSPAR 432
>sp|Q4WAQ9|PPIL4_ASPFU Peptidyl-prolyl cis-trans isomerase-like 4 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=cyp6 PE=3 SV=1
Length = 459
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 63 EERLERRRRERAEQVAYKLEQEIALWDPNSFPNATMDPFK-TLFIARVNYDTSESKLRRE 121
EE +E+ RRER + Q + L P A + P + LF+ ++N T + L+
Sbjct: 213 EEAMEKLRREREARA-----QALTLEMVGDLPFAEVKPPENVLFVCKLNPVTQDEDLQLI 267
Query: 122 FEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER-- 179
F +GPI ++ +K TG YAFIE+E+++D AY G ID R+ VD +
Sbjct: 268 FSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLIDDHRIHVDFSQSV 327
Query: 180 SRTVKGWLPRRLG-----GGLGGT 198
S+ + W + GG GG
Sbjct: 328 SKLSESWRNATISKRSQRGGFGGV 351
>sp|Q5ARI5|PPIL4_EMENI Peptidyl-prolyl cis-trans isomerase-like 4 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=cyp6 PE=3 SV=1
Length = 461
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 110/263 (41%), Gaps = 43/263 (16%)
Query: 60 ETREERLERRRRERAEQVAYKLEQEIALWDPNSFPNATMDPFK-TLFIARVNYDTSESKL 118
E E+L R R RA+ + ++ ++ P A + P + LF+ ++N T + L
Sbjct: 213 EASMEKLRREREARAQALTLEMVGDL--------PFAEVKPPENVLFVCKLNPVTQDEDL 264
Query: 119 RREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178
F +G I ++ +K TG YAFIE+E ++D AY G ID R+ VD
Sbjct: 265 ELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKMQGVLIDDHRIHVDFS 324
Query: 179 RS----------RTVKGWLPRRLGGGLGGTRRGGPDVNLKHSGREDNERERERYRLERER 228
+S TVK +R GG GG G + ++ E N RER Y + ++
Sbjct: 325 QSVSKLSESWRDATVKKRSAQR--GGFGGV--AGLEKKRQYRASE-NARERANYNMVFDK 379
Query: 229 ELAGGPPRARSGSNDRERERERRRSRSRERKRRTSRSRSRDRRRRRSRERIRDDDIEEVE 288
N R RER SRS +R R SR RR R R D
Sbjct: 380 N-----------DNRRSAPRERSYSRSPQRNNYRDRRDSRSPRRDSYRSRYGD------- 421
Query: 289 FRPKDRSDRDRDRDRKRRREREN 311
R RS RDRDR R +N
Sbjct: 422 -RSNSRSPPLRDRDRIRTDYYDN 443
>sp|P19018|TRA2_DROME Transformer-2 sex-determining protein OS=Drosophila melanogaster
GN=tra2 PE=1 SV=1
Length = 264
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+ + + +N +TS+ K+R F YGPI++I MV + T + RG+ FI +E D +A
Sbjct: 97 RCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKD 156
Query: 162 HADGKKIDGRRVLVDVE 178
G ++DGRR+ VD
Sbjct: 157 SCSGIEVDGRRIRVDFS 173
>sp|Q8WUA2|PPIL4_HUMAN Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens GN=PPIL4
PE=1 SV=1
Length = 492
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 13/144 (9%)
Query: 50 PKDTPPPTRVETREERL---------ERRRRERAEQVAYKLE---QEIALWDPNSFPNAT 97
P +P PTR + R+ + R E E++ + E Q I L P+A
Sbjct: 175 PDRSPEPTREQLDSGRIGADEEIDDFKGRSAEEVEEIKAEKEAKTQAILLEMVGDLPDAD 234
Query: 98 MDP-FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156
+ P LF+ ++N T++ L F +GPI+ ++ + TG+ YAFIE+E E D
Sbjct: 235 IKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDC 294
Query: 157 HSAYKHADGKKIDGRRVLVDVERS 180
A+ D ID RR+ VD +S
Sbjct: 295 EKAFFKMDNVLIDDRRIHVDFSQS 318
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGP+ + +V+++ TG+ RG+AF+ +E D
Sbjct: 111 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 170
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 171 SKEAMERANGMELDGRRIRVD 191
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGP+ + +V+++ TG+ RG+AF+ +E D
Sbjct: 113 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 172
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 173 SKEAMERANGMELDGRRIRVD 193
>sp|Q9CXG3|PPIL4_MOUSE Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus musculus GN=Ppil4
PE=2 SV=2
Length = 492
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 83 QEIALWDPNSFPNATMDP-FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGK 141
Q I L P+A + P LF+ ++N T++ L F +GPI+ ++ + TG+
Sbjct: 220 QAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGE 279
Query: 142 PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180
YAFIE+E E D A+ D ID RR+ VD +S
Sbjct: 280 SLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQS 318
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2
SV=1
Length = 379
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +TSE L F +G I +++++ ++ T K RG+AF+ YE+ D A +
Sbjct: 10 LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREM 69
Query: 164 DGKKIDGRRVLV 175
+GK +DG+ + V
Sbjct: 70 NGKPLDGKPIKV 81
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +N++T E L F +GPI ++V+V ++ T + RG+ FI + + A +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 164 DGKKIDGRRVLVD 176
+G+ +DGR++ VD
Sbjct: 68 NGESLDGRQIRVD 80
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P +D TL + + Y TS LRR FE YG + + + T PRG+AF+ +
Sbjct: 6 PPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDR 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG ++DGR + V V R
Sbjct: 66 RDAQDAEAAMDGAELDGRELRVQVAR 91
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
+L + + +D + LR+ FE +GP+K I + + TG PRG+ F+++ D A H
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 163 ADGKKIDGRRVLV 175
DG + GR + V
Sbjct: 97 MDGYLLLGRELTV 109
>sp|P0C196|PPIL4_USTMA Peptidyl-prolyl cis-trans isomerase-like 4 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=CYP6 PE=3 SV=1
Length = 551
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 108/304 (35%), Gaps = 57/304 (18%)
Query: 47 FEDPKDTPPPTRVETREERL----------------ERRRRERAEQVAYKLEQEIALWDP 90
F P +P PT + R RL E RR A LE
Sbjct: 196 FCAPSRSPSPTPCQVRALRLADDEDVHSDVDPASKEEMRRNADTNAAALTLEM------V 249
Query: 91 NSFPNATM-DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIE 149
P A + P LF+ ++N T L F +G I ++ +K TG YAFIE
Sbjct: 250 GDLPFAEIRPPENILFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIE 309
Query: 150 YEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVKGWLPRRLGGGLGGTRRGGPDVNLKH 209
++ + D AY +D RR+ VD +S + RL G R G D H
Sbjct: 310 FDKKDDAERAYFKMQNVLVDDRRIWVDFSQSVS-------RLHGDWVKKRNAGSDAPRAH 362
Query: 210 SGREDNERERERYRLERERELAGG--------------PPRARSGSNDRERERERRRSRS 255
+E+ + YR AGG P AR D R+ S
Sbjct: 363 YQSGADEQSVDSYRPN-----AGGYQKRGDDRRHDRRDQPTAR---GDTSSWHSRQDS-- 412
Query: 256 RERKRRTSRSRSRDRRRRRSRERIRDDDIEEVEFRPKDRSDRDRDRDRKRRRERENSEDR 315
ER R S +RDR +RSR DD+ + +R D RD +R D
Sbjct: 413 -ERSYRESNDDTRDRSNKRSRR--HHDDVPQQSRSRSERHDSHRDHERHHLSRHVRPSDE 469
Query: 316 NERK 319
E K
Sbjct: 470 GESK 473
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSA 159
P +LF+ V DT LRREF YGPI + + + T +PRG+A++++E RD A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 160 YKHADGKKIDGRRVLV 175
+ D K I GR++ +
Sbjct: 68 LHNLDRKWICGRQIEI 83
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSA 159
P +LF+ V DT LRREF YGPI + + + T +PRG+A++++E RD A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 160 YKHADGKKIDGRRVLV 175
+ D K I GR++ +
Sbjct: 68 LHNLDRKWICGRQIEI 83
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 55 PPTRVETREERLERR-RRERAEQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDT 113
P T+V+ E ER + AE+V++ E + + W +F+ + Y+
Sbjct: 3 PLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAW---------------IFLGGLPYEL 47
Query: 114 SESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 173
+E + F YG I I +V +K TGK +G+ F+ YE +R A + +G KI GR +
Sbjct: 48 TEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTI 107
Query: 174 LVD 176
VD
Sbjct: 108 RVD 110
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 15/103 (14%)
Query: 74 AEQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVM 133
AE+V++ E + + W +F+ + Y+ +E + F YG I I +
Sbjct: 23 AEKVSWHSEYKHSAW---------------IFVGGLPYELTEGDIICVFSQYGEIVNINL 67
Query: 134 VHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
V +K TGK +G+ F+ YE +R A + +G KI GR + VD
Sbjct: 68 VRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVD 110
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 55 PPTRVETREERLERR-RRERAEQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDT 113
P T+V+ E ER + A++V++ E + + W +F+ + Y+
Sbjct: 3 PLTKVKLINELNEREVQLGVADKVSWHSEYKDSAW---------------IFLGGLPYEL 47
Query: 114 SESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 173
+E + F YG I I +V +K TGK +G+ F+ YE +R A + +G KI GR +
Sbjct: 48 TEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTI 107
Query: 174 LVD 176
VD
Sbjct: 108 RVD 110
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C OS=Homo
sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L+ F +GPI +++++ ++ T K RG+AFI +E+ D +A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 164 DGKKIDGRRVLVD 176
+GK + G+ + V+
Sbjct: 69 NGKSLHGKAIKVE 81
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo
sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L+ F +GPI +++++ ++ T K RG+AFI +E+ D +A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 164 DGKKIDGRRVLVD 176
+GK + G+ + V+
Sbjct: 69 NGKSLHGKAIKVE 81
>sp|O02008|TRA2_DROVI Transformer-2 sex-determining protein OS=Drosophila virilis GN=tra2
PE=3 SV=1
Length = 272
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+ + + +N +T++ K+R F +GPI++I MV + T + RG+ FI +E+ D A
Sbjct: 105 RCIGVFGLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFIYFENLGDARVAKD 164
Query: 162 HADGKKIDGRRVLVD 176
G ++DGRR+ VD
Sbjct: 165 ACTGMEVDGRRIRVD 179
>sp|Q6PG31|RNPS1_DANRE RNA-binding protein with serine-rich domain 1 OS=Danio rerio
GN=rnps1 PE=2 SV=1
Length = 283
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVM----VHNKVTGKPRGYAFIEYEHERDMHSA 159
L++ R+ + ++ ++ F YG IK I M +H V+ +GYA++EYE D A
Sbjct: 139 LYLGRLTRNVTKDHIQEIFATYGKIKMIDMPSDRLHPNVS---KGYAYVEYESPEDAQKA 195
Query: 160 YKHADGKKIDGRRVLV 175
KH DG +IDG+ +
Sbjct: 196 LKHMDGGQIDGQEITA 211
>sp|Q9XFD1|NCBP2_ARATH Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana
GN=CBP20 PE=1 SV=1
Length = 257
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
T++I V++ T+E +L F G IKKI+M +K T P G+ F+ + D A K+
Sbjct: 35 TVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKY 94
Query: 163 ADGKKIDGRRVLVDVE 178
G +D R + VD +
Sbjct: 95 ISGTILDDRPIRVDFD 110
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 122/282 (43%), Gaps = 33/282 (11%)
Query: 76 QVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVH 135
QV + E + + + S+ +A +F+ + YD +E L F YG + + +V
Sbjct: 11 QVINQKEALLGIGEDGSW-HAKFKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVR 69
Query: 136 NKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD-------VERSRTVKGWLP 188
+K TGK +G+AF+ YE +R A + +G K+ GR V VD E +
Sbjct: 70 DKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVDHVSKYKKKEEEDEEELQKK 129
Query: 189 RRLGGGLGGTRRG----GPDVNLKH-------SGREDNERERERYRLERERELAGGPPRA 237
R G ++G G H +G E + R+ +R E PP +
Sbjct: 130 REARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEESKARWEHDRHHE----PPMS 185
Query: 238 R-----SGSNDRERERERRRSRSRERKRRTSRS---RSRDRRRRRSRERIRDDDIEEVEF 289
S R +R + ++S R+ ++SRS + RD R R S +D D +
Sbjct: 186 HKKFPSSAGEQRFPDRAKEENKSTGREGQSSRSEAYKDRDSRLRHSDRGSKDHDRYRHDR 245
Query: 290 RP-KDRSDRDRDRDRKRRRERENSE-DRNERKRDRKERRKER 329
P + R DR R+ DR + E SE R+E K D ++++ R
Sbjct: 246 SPERSRGDRQRNNDRYAQGRDEKSERYRSEVKHDEGDQKRSR 287
>sp|Q4IE79|PPIL4_GIBZE Peptidyl-prolyl cis-trans isomerase-like 4 OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=CYP6 PE=3 SV=2
Length = 485
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 13/146 (8%)
Query: 50 PKDTPPPTRVETREERL------------ERRRRERAEQVAYKLEQEIALWDPNSFPNAT 97
P +PPPT + + R+ + ER + Q + L P A
Sbjct: 186 PSTSPPPTDQQLKTVRIADEAALHEDDNVDEEELERRRRNREAQAQALTLEMMGDLPFAE 245
Query: 98 MDPFK-TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156
+ P + LF+ ++N T + L F +G I ++ ++ TG YAFIEYE +
Sbjct: 246 VKPPENVLFVCKLNPVTGDEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASC 305
Query: 157 HSAYKHADGKKIDGRRVLVDVERSRT 182
+AY G ID RR+ VD +S +
Sbjct: 306 EAAYFKMQGVLIDDRRIHVDFSQSVS 331
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+++ + + +L R F YGP++ + + N P G+AF+E+E RD A +
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGL 67
Query: 164 DGKKIDGRRVLVDVERSRTVKGWLPRR 190
DGK I G RV V++ +PRR
Sbjct: 68 DGKVICGSRVRVELSTG------MPRR 88
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+++ + + +L R F YGP++ + + N P G+AF+E+E RD A +
Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGL 96
Query: 164 DGKKIDGRRVLVDVERSRTVKGWLPRR 190
DGK I G RV V++ +PRR
Sbjct: 97 DGKVICGSRVRVELSTG------MPRR 117
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7 PE=2
SV=1
Length = 235
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+++ + + +L R F YGP++ + + N P G+AF+E+E RD A +
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGL 67
Query: 164 DGKKIDGRRVLVDVERSRTVKGWLPRR 190
DGK I G RV V++ +PRR
Sbjct: 68 DGKVICGSRVRVELSTG------MPRR 88
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P ++ +L + + Y TS LRR FE YG + + + ++ T + RG+AF+ + +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG +DGR + V + R
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P ++ +L + + Y TS LRR FE YG + + + ++ T + RG+AF+ + +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG +DGR + V + R
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis
elegans GN=rsp-4 PE=3 SV=1
Length = 196
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMH 157
++ +L I ++Y T+ + LRR FE YG I + + +K + + +G+ F+ + RD
Sbjct: 15 INGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAE 74
Query: 158 SAYKHADGKKIDGRRVLVDVER 179
A DGK +DGR + V + +
Sbjct: 75 HALDRTDGKLVDGRELRVTLAK 96
>sp|P84104|SRSF3_MOUSE Serine/arginine-rich splicing factor 3 OS=Mus musculus GN=Srsf3
PE=1 SV=1
Length = 164
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+++ + + ++++L R F YGP++ + + N P G+AF+E+E RD A +
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVREL 66
Query: 164 DGKKIDGRRVLVDVE 178
DG+ + G RV V++
Sbjct: 67 DGRTLCGCRVRVELS 81
>sp|P84103|SRSF3_HUMAN Serine/arginine-rich splicing factor 3 OS=Homo sapiens GN=SRSF3
PE=1 SV=1
Length = 164
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+++ + + ++++L R F YGP++ + + N P G+AF+E+E RD A +
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVREL 66
Query: 164 DGKKIDGRRVLVDVE 178
DG+ + G RV V++
Sbjct: 67 DGRTLCGCRVRVELS 81
>sp|Q3SZR8|SRSF3_BOVIN Serine/arginine-rich splicing factor 3 OS=Bos taurus GN=SRSF3 PE=2
SV=1
Length = 164
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+++ + + ++++L R F YGP++ + + N P G+AF+E+E RD A +
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVREL 66
Query: 164 DGKKIDGRRVLVDVE 178
DG+ + G RV V++
Sbjct: 67 DGRTLCGCRVRVELS 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,177,199
Number of Sequences: 539616
Number of extensions: 7128935
Number of successful extensions: 119627
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2382
Number of HSP's successfully gapped in prelim test: 1895
Number of HSP's that attempted gapping in prelim test: 44730
Number of HSP's gapped (non-prelim): 30488
length of query: 363
length of database: 191,569,459
effective HSP length: 119
effective length of query: 244
effective length of database: 127,355,155
effective search space: 31074657820
effective search space used: 31074657820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)