Query psy16184
Match_columns 363
No_of_seqs 427 out of 3469
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 22:55:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0113|consensus 100.0 5.4E-44 1.2E-48 314.3 22.1 200 1-200 1-200 (335)
2 TIGR01659 sex-lethal sex-letha 99.9 7.1E-23 1.5E-27 193.8 9.3 151 7-182 122-276 (346)
3 KOG0107|consensus 99.9 1.2E-20 2.6E-25 155.1 13.8 79 100-183 9-87 (195)
4 KOG0148|consensus 99.8 4.9E-22 1.1E-26 173.5 5.1 160 8-182 78-239 (321)
5 TIGR01645 half-pint poly-U bin 99.8 2.2E-21 4.8E-26 193.1 7.2 166 7-187 122-290 (612)
6 KOG4207|consensus 99.8 3.5E-20 7.5E-25 156.1 13.2 83 99-181 11-93 (256)
7 PLN03134 glycine-rich RNA-bind 99.8 7.8E-20 1.7E-24 152.2 14.8 84 100-183 33-116 (144)
8 TIGR01622 SF-CC1 splicing fact 99.8 4.7E-20 1E-24 183.0 6.4 161 7-180 104-265 (457)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.9E-20 4.1E-25 179.6 3.3 82 101-182 269-350 (352)
10 KOG0127|consensus 99.7 8.1E-19 1.8E-23 166.5 5.4 172 7-182 20-197 (678)
11 KOG0415|consensus 99.7 1.8E-17 3.8E-22 149.9 12.7 91 98-188 236-326 (479)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.2E-18 2.7E-23 167.0 4.2 150 7-181 18-171 (352)
13 KOG0121|consensus 99.7 1.3E-17 2.9E-22 130.2 8.1 80 101-180 36-115 (153)
14 TIGR01628 PABP-1234 polyadenyl 99.7 5.3E-18 1.1E-22 172.4 6.0 164 7-181 193-364 (562)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.7 3.6E-17 7.7E-22 164.5 8.8 149 31-180 219-374 (509)
16 KOG0145|consensus 99.7 6.1E-18 1.3E-22 147.2 2.7 155 2-181 46-209 (360)
17 KOG0147|consensus 99.7 2.2E-17 4.7E-22 157.5 5.1 164 6-180 193-357 (549)
18 TIGR01628 PABP-1234 polyadenyl 99.7 1.8E-17 3.9E-22 168.6 4.5 151 6-180 14-166 (562)
19 KOG0117|consensus 99.7 2.8E-17 6E-22 152.9 3.9 170 2-181 93-331 (506)
20 KOG0122|consensus 99.7 3.2E-16 7E-21 135.6 9.5 83 99-181 187-269 (270)
21 KOG4205|consensus 99.7 1.7E-16 3.8E-21 146.3 8.4 158 6-183 20-178 (311)
22 PF00076 RRM_1: RNA recognitio 99.7 5.9E-16 1.3E-20 112.4 9.4 70 104-174 1-70 (70)
23 TIGR01659 sex-lethal sex-letha 99.7 3.8E-16 8.3E-21 148.0 10.7 83 98-180 104-186 (346)
24 TIGR01645 half-pint poly-U bin 99.6 2.6E-15 5.6E-20 150.0 15.2 80 100-179 106-185 (612)
25 KOG0149|consensus 99.6 5.7E-16 1.2E-20 133.6 7.1 79 101-180 12-90 (247)
26 TIGR01648 hnRNP-R-Q heterogene 99.6 6.5E-16 1.4E-20 154.0 8.2 77 100-184 232-310 (578)
27 KOG0145|consensus 99.6 2.6E-16 5.7E-21 137.0 3.8 80 101-180 278-357 (360)
28 KOG0131|consensus 99.6 3.1E-15 6.8E-20 124.1 9.3 149 7-183 24-179 (203)
29 KOG0127|consensus 99.6 9.4E-16 2E-20 145.9 5.4 81 101-181 292-378 (678)
30 KOG0124|consensus 99.6 2E-15 4.3E-20 137.2 6.9 158 8-180 129-289 (544)
31 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.4E-16 3E-21 160.2 -0.8 171 7-180 310-501 (509)
32 KOG0126|consensus 99.6 1.6E-16 3.4E-21 131.6 -0.5 81 100-180 34-114 (219)
33 KOG0105|consensus 99.6 1.1E-14 2.4E-19 121.0 10.0 80 100-182 5-84 (241)
34 PLN03120 nucleic acid binding 99.6 1.1E-14 2.4E-19 129.8 10.2 76 101-180 4-79 (260)
35 KOG0130|consensus 99.6 5.9E-15 1.3E-19 116.5 7.4 84 99-182 70-153 (170)
36 PF14259 RRM_6: RNA recognitio 99.6 1.2E-14 2.6E-19 105.8 8.6 70 104-174 1-70 (70)
37 KOG0111|consensus 99.5 5.2E-15 1.1E-19 126.0 4.8 85 99-183 8-92 (298)
38 PLN03213 repressor of silencin 99.5 2.6E-14 5.6E-19 134.6 9.7 77 100-180 9-87 (759)
39 KOG0144|consensus 99.5 1.2E-14 2.5E-19 135.0 6.5 147 7-183 49-208 (510)
40 KOG0125|consensus 99.5 4.5E-14 9.7E-19 127.1 9.3 82 98-181 93-174 (376)
41 KOG0123|consensus 99.5 1.1E-14 2.5E-19 138.8 5.5 141 5-181 11-153 (369)
42 KOG0131|consensus 99.5 2.2E-14 4.8E-19 119.1 6.2 82 98-179 6-87 (203)
43 KOG0148|consensus 99.5 5E-14 1.1E-18 123.7 8.2 82 101-182 62-143 (321)
44 PLN03121 nucleic acid binding 99.5 1.2E-13 2.6E-18 121.3 10.5 76 101-180 5-80 (243)
45 smart00362 RRM_2 RNA recogniti 99.5 1.8E-13 3.9E-18 98.8 9.6 72 103-176 1-72 (72)
46 TIGR01648 hnRNP-R-Q heterogene 99.5 1.2E-13 2.6E-18 137.9 10.7 79 99-178 56-135 (578)
47 TIGR01622 SF-CC1 splicing fact 99.5 1.4E-13 3E-18 136.6 10.9 80 100-180 88-167 (457)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.3E-14 2.7E-19 144.7 3.1 152 7-181 17-174 (481)
49 KOG0109|consensus 99.5 9.9E-15 2.1E-19 129.3 1.7 133 7-182 17-151 (346)
50 KOG0117|consensus 99.5 1.5E-13 3.3E-18 128.3 9.0 83 97-179 79-162 (506)
51 PF12220 U1snRNP70_N: U1 small 99.5 2E-13 4.3E-18 104.8 8.2 93 1-93 1-93 (94)
52 smart00360 RRM RNA recognition 99.5 4.1E-13 8.9E-18 96.6 8.7 71 106-176 1-71 (71)
53 COG0724 RNA-binding proteins ( 99.4 5.3E-13 1.1E-17 122.1 10.2 79 101-179 115-193 (306)
54 KOG0114|consensus 99.4 9.7E-13 2.1E-17 99.3 8.9 79 99-180 16-94 (124)
55 cd00590 RRM RRM (RNA recogniti 99.4 2E-12 4.4E-17 93.8 10.1 74 103-177 1-74 (74)
56 KOG0108|consensus 99.4 5.6E-13 1.2E-17 128.4 8.2 81 102-182 19-99 (435)
57 KOG0124|consensus 99.4 2.8E-13 6.1E-18 123.3 5.7 77 101-177 113-189 (544)
58 KOG4676|consensus 99.4 5E-13 1.1E-17 122.7 7.1 79 102-180 8-89 (479)
59 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 2.3E-12 5.1E-17 128.4 11.0 78 99-181 273-351 (481)
60 KOG0123|consensus 99.3 1.2E-12 2.5E-17 125.1 5.4 167 5-182 180-350 (369)
61 smart00361 RRM_1 RNA recogniti 99.3 7.8E-12 1.7E-16 91.0 8.4 61 115-175 2-69 (70)
62 KOG0110|consensus 99.3 1.6E-13 3.5E-18 134.7 -1.4 163 4-181 527-693 (725)
63 KOG0146|consensus 99.3 1.4E-12 3.1E-17 114.3 4.5 86 97-182 281-366 (371)
64 KOG0144|consensus 99.3 7.5E-12 1.6E-16 116.5 8.5 82 100-181 33-117 (510)
65 PF13893 RRM_5: RNA recognitio 99.3 1.6E-11 3.5E-16 85.2 8.1 56 118-178 1-56 (56)
66 KOG0109|consensus 99.3 4.4E-12 9.5E-17 112.6 6.3 72 102-181 3-74 (346)
67 KOG4661|consensus 99.2 3.8E-11 8.2E-16 115.1 10.7 83 101-183 405-487 (940)
68 KOG4212|consensus 99.2 6.3E-11 1.4E-15 110.5 8.7 79 101-180 44-123 (608)
69 KOG4208|consensus 99.1 9.1E-11 2E-15 99.8 7.0 81 101-181 49-130 (214)
70 KOG4676|consensus 99.1 1.8E-11 3.9E-16 112.7 1.0 69 102-175 152-220 (479)
71 KOG4206|consensus 99.1 2.8E-10 6.1E-15 98.3 8.2 81 99-182 7-91 (221)
72 KOG0116|consensus 99.1 5.5E-10 1.2E-14 107.2 10.8 83 101-184 288-370 (419)
73 KOG4205|consensus 99.0 1.3E-10 2.9E-15 107.5 4.1 82 100-182 5-86 (311)
74 KOG0132|consensus 99.0 6.3E-10 1.4E-14 110.5 8.7 77 101-183 421-497 (894)
75 KOG0153|consensus 99.0 1.6E-09 3.4E-14 98.8 7.8 75 100-180 227-302 (377)
76 KOG0106|consensus 98.9 1.2E-09 2.5E-14 95.4 6.0 72 102-181 2-73 (216)
77 KOG0110|consensus 98.9 2.2E-09 4.8E-14 106.0 8.1 78 102-179 516-596 (725)
78 KOG1548|consensus 98.9 3.8E-09 8.2E-14 96.3 8.9 85 98-183 131-223 (382)
79 KOG4209|consensus 98.9 2.5E-09 5.3E-14 95.6 7.0 83 98-181 98-180 (231)
80 KOG4212|consensus 98.9 3E-09 6.5E-14 99.5 6.9 75 99-178 534-608 (608)
81 KOG0226|consensus 98.9 2.8E-09 6.1E-14 93.3 5.8 78 101-178 190-267 (290)
82 KOG0147|consensus 98.9 2.5E-09 5.4E-14 103.0 5.8 76 99-179 441-526 (549)
83 KOG0533|consensus 98.9 1E-08 2.2E-13 91.4 9.1 81 101-182 83-163 (243)
84 KOG0106|consensus 98.9 1.2E-09 2.6E-14 95.3 2.8 141 7-175 16-165 (216)
85 KOG0146|consensus 98.8 1.3E-08 2.9E-13 89.6 6.7 80 100-180 18-100 (371)
86 KOG1457|consensus 98.8 6.1E-08 1.3E-12 83.5 10.5 84 100-183 33-120 (284)
87 KOG4454|consensus 98.7 3.2E-09 7E-14 91.0 1.9 78 101-180 9-86 (267)
88 KOG0151|consensus 98.7 4.4E-08 9.6E-13 96.7 7.6 84 98-181 171-257 (877)
89 PF04059 RRM_2: RNA recognitio 98.7 2.2E-07 4.8E-12 71.3 9.4 79 102-180 2-86 (97)
90 KOG1995|consensus 98.6 1.1E-07 2.4E-12 87.6 7.8 86 98-183 63-156 (351)
91 KOG4660|consensus 98.6 3.9E-08 8.4E-13 95.1 5.1 77 93-174 67-143 (549)
92 KOG0120|consensus 98.6 6.1E-08 1.3E-12 94.4 5.1 82 99-180 287-368 (500)
93 KOG4206|consensus 98.5 8.7E-08 1.9E-12 83.1 3.2 162 8-179 29-220 (221)
94 KOG4210|consensus 98.4 9E-08 1.9E-12 88.4 2.5 84 99-183 182-266 (285)
95 KOG4211|consensus 98.3 2.1E-06 4.5E-11 82.1 8.4 78 101-182 10-87 (510)
96 COG5175 MOT2 Transcriptional r 98.3 6.2E-06 1.3E-10 75.3 9.9 93 88-180 101-202 (480)
97 KOG4849|consensus 98.3 1.9E-06 4E-11 78.9 6.4 75 102-176 81-157 (498)
98 KOG0120|consensus 98.2 6.3E-07 1.4E-11 87.5 2.9 170 8-179 305-490 (500)
99 KOG1190|consensus 98.2 4.4E-06 9.5E-11 78.1 8.2 77 101-182 297-374 (492)
100 KOG1548|consensus 98.2 1.5E-05 3.3E-10 73.1 11.5 99 79-181 243-352 (382)
101 KOG2416|consensus 98.2 1.8E-06 3.9E-11 84.1 5.5 78 98-181 441-522 (718)
102 KOG1457|consensus 98.2 1.8E-06 3.8E-11 74.6 4.4 65 100-168 209-273 (284)
103 KOG2202|consensus 98.1 1E-05 2.3E-10 71.5 7.4 64 117-181 84-148 (260)
104 PF11608 Limkain-b1: Limkain b 98.0 1.2E-05 2.7E-10 58.9 5.8 68 102-179 3-75 (90)
105 KOG4211|consensus 97.9 3.5E-05 7.6E-10 73.9 8.0 79 100-180 102-181 (510)
106 PF08777 RRM_3: RNA binding mo 97.9 1.4E-05 3E-10 62.7 4.2 70 102-177 2-76 (105)
107 KOG0129|consensus 97.9 4.7E-05 1E-09 73.5 8.0 69 94-162 363-432 (520)
108 KOG0128|consensus 97.8 7.4E-06 1.6E-10 83.1 2.2 135 5-180 680-814 (881)
109 KOG1365|consensus 97.8 5.1E-05 1.1E-09 70.6 6.1 79 101-180 280-361 (508)
110 KOG0112|consensus 97.7 5.4E-05 1.2E-09 77.4 5.9 78 97-180 451-530 (975)
111 KOG2314|consensus 97.6 0.00015 3.3E-09 70.6 7.6 76 101-177 58-140 (698)
112 KOG3152|consensus 97.6 3.9E-05 8.5E-10 67.8 3.2 72 101-172 74-157 (278)
113 KOG0105|consensus 97.6 0.00057 1.2E-08 57.7 9.9 61 102-169 116-176 (241)
114 KOG1855|consensus 97.5 8.2E-05 1.8E-09 70.2 4.0 70 98-167 228-310 (484)
115 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00025 5.5E-09 48.2 5.0 52 102-160 2-53 (53)
116 PF08952 DUF1866: Domain of un 97.4 0.00081 1.8E-08 55.2 7.9 74 98-180 24-106 (146)
117 KOG1190|consensus 97.4 0.00035 7.5E-09 65.7 6.3 79 98-180 411-490 (492)
118 KOG4307|consensus 97.4 0.00068 1.5E-08 67.7 8.3 75 103-177 869-943 (944)
119 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0011 2.3E-08 51.3 7.3 77 101-179 6-90 (100)
120 KOG1456|consensus 97.3 0.0013 2.8E-08 61.3 9.0 81 97-182 283-364 (494)
121 KOG0129|consensus 97.3 0.00043 9.3E-09 67.1 5.6 63 101-164 259-327 (520)
122 KOG1456|consensus 97.2 0.0013 2.8E-08 61.2 7.7 77 100-181 119-199 (494)
123 COG0724 RNA-binding proteins ( 97.1 4.5E-05 9.8E-10 69.3 -2.5 154 5-161 128-285 (306)
124 KOG2068|consensus 97.0 0.0006 1.3E-08 62.9 3.3 86 96-181 72-163 (327)
125 KOG1996|consensus 96.9 0.0027 5.8E-08 57.4 7.0 64 116-179 301-365 (378)
126 KOG2253|consensus 96.8 0.0022 4.7E-08 64.1 5.5 70 100-178 39-108 (668)
127 KOG2193|consensus 96.6 0.0019 4.1E-08 61.1 3.8 73 102-181 2-76 (584)
128 KOG4368|consensus 96.6 0.0026 5.7E-08 62.4 4.8 8 32-39 351-358 (757)
129 KOG0112|consensus 96.5 0.00087 1.9E-08 68.9 0.9 79 100-179 371-449 (975)
130 KOG0115|consensus 96.5 0.0036 7.7E-08 55.7 4.5 78 102-180 32-113 (275)
131 PF10309 DUF2414: Protein of u 96.5 0.022 4.8E-07 39.8 7.4 55 101-163 5-62 (62)
132 KOG0128|consensus 96.4 0.00018 3.9E-09 73.4 -4.5 67 102-168 668-734 (881)
133 PF08675 RNA_bind: RNA binding 96.3 0.015 3.2E-07 42.9 6.0 54 102-164 10-63 (87)
134 KOG4207|consensus 96.3 0.00061 1.3E-08 58.5 -1.5 62 4-67 25-88 (256)
135 KOG0113|consensus 96.2 0.015 3.2E-07 52.9 6.5 37 5-43 114-150 (335)
136 KOG1365|consensus 96.1 0.017 3.6E-07 54.3 6.6 72 103-176 163-238 (508)
137 KOG4454|consensus 95.8 0.0013 2.9E-08 57.0 -1.5 65 103-168 82-150 (267)
138 PF15023 DUF4523: Protein of u 95.8 0.053 1.1E-06 44.2 7.6 76 96-179 81-160 (166)
139 KOG4307|consensus 95.7 0.013 2.8E-07 58.9 4.4 78 100-178 433-511 (944)
140 KOG2135|consensus 95.6 0.0079 1.7E-07 57.9 2.6 73 102-181 373-446 (526)
141 PF03880 DbpA: DbpA RNA bindin 95.1 0.11 2.4E-06 37.8 6.7 67 103-178 2-74 (74)
142 KOG0149|consensus 95.0 0.0027 5.9E-08 55.8 -2.2 60 7-68 27-87 (247)
143 PF03467 Smg4_UPF3: Smg-4/UPF3 95.0 0.023 5.1E-07 48.9 3.5 80 101-180 7-97 (176)
144 PF07576 BRAP2: BRCA1-associat 95.0 0.26 5.6E-06 38.8 8.9 75 101-177 13-91 (110)
145 KOG2548|consensus 94.8 0.0071 1.5E-07 58.8 -0.2 10 151-160 235-244 (653)
146 KOG4574|consensus 94.8 0.094 2E-06 54.1 7.6 74 103-182 300-375 (1007)
147 KOG4285|consensus 94.5 0.12 2.5E-06 47.3 6.7 66 104-177 200-266 (350)
148 KOG4660|consensus 94.4 0.067 1.4E-06 52.7 5.3 81 100-180 387-472 (549)
149 KOG2888|consensus 94.2 0.011 2.3E-07 54.4 -0.5 9 143-151 160-168 (453)
150 PLN03134 glycine-rich RNA-bind 94.2 0.0035 7.7E-08 52.1 -3.5 39 6-46 48-86 (144)
151 KOG4210|consensus 93.7 0.055 1.2E-06 50.2 3.1 82 100-181 87-168 (285)
152 KOG0122|consensus 93.6 0.019 4.1E-07 50.8 -0.0 39 6-46 203-241 (270)
153 PF04847 Calcipressin: Calcipr 93.6 0.25 5.4E-06 42.8 6.8 61 114-180 8-70 (184)
154 KOG2591|consensus 93.6 0.08 1.7E-06 52.2 4.1 68 101-175 175-246 (684)
155 KOG2548|consensus 93.4 0.033 7.1E-07 54.3 1.1 18 9-26 73-90 (653)
156 PLN03213 repressor of silencin 93.2 0.015 3.3E-07 56.2 -1.5 61 6-72 24-88 (759)
157 KOG2318|consensus 92.8 0.53 1.1E-05 46.8 8.3 80 98-177 171-302 (650)
158 KOG2888|consensus 92.4 0.04 8.6E-07 50.8 0.1 10 116-125 172-181 (453)
159 KOG0151|consensus 92.2 0.15 3.3E-06 51.7 3.9 12 167-178 632-643 (877)
160 PRK11634 ATP-dependent RNA hel 92.1 1.6 3.5E-05 45.4 11.4 69 104-181 489-563 (629)
161 KOG0125|consensus 91.7 0.0086 1.9E-07 55.1 -5.0 59 6-68 110-170 (376)
162 KOG0108|consensus 91.6 0.01 2.2E-07 58.0 -5.0 65 7-73 33-99 (435)
163 KOG2193|consensus 91.3 0.0093 2E-07 56.6 -5.3 76 101-179 80-155 (584)
164 KOG0804|consensus 90.3 0.93 2E-05 43.9 6.9 68 101-170 74-142 (493)
165 KOG0111|consensus 89.6 0.07 1.5E-06 46.5 -1.0 57 9-67 27-85 (298)
166 KOG0126|consensus 88.5 0.052 1.1E-06 46.0 -2.5 61 5-67 48-110 (219)
167 PF11767 SET_assoc: Histone ly 88.0 3.2 7E-05 29.4 6.7 55 112-175 11-65 (66)
168 smart00361 RRM_1 RNA recogniti 87.3 0.031 6.7E-07 40.1 -4.0 40 7-47 3-48 (70)
169 KOG0835|consensus 86.6 1.2 2.6E-05 41.5 4.9 6 146-151 176-181 (367)
170 KOG4483|consensus 84.0 8.2 0.00018 37.0 9.1 56 100-162 390-446 (528)
171 KOG0107|consensus 80.8 4.5 9.7E-05 34.4 5.6 12 101-112 37-48 (195)
172 KOG4410|consensus 78.9 7.9 0.00017 35.4 6.9 46 102-153 331-377 (396)
173 COG5638 Uncharacterized conser 77.4 10 0.00022 36.4 7.5 74 98-171 143-286 (622)
174 smart00360 RRM RNA recognition 77.3 0.53 1.1E-05 32.3 -0.8 38 7-46 11-48 (71)
175 PF07530 PRE_C2HC: Associated 76.0 4.1 8.8E-05 29.1 3.5 62 116-180 2-64 (68)
176 KOG4019|consensus 75.9 3.1 6.7E-05 35.5 3.3 75 100-180 9-89 (193)
177 smart00596 PRE_C2HC PRE_C2HC d 69.6 6.8 0.00015 27.9 3.3 61 116-179 2-63 (69)
178 KOG2295|consensus 68.1 0.7 1.5E-05 45.8 -2.6 74 100-173 230-303 (648)
179 KOG4213|consensus 66.9 4.8 0.0001 34.3 2.5 55 102-162 112-169 (205)
180 PF03468 XS: XS domain; Inter 65.7 17 0.00037 28.9 5.3 56 103-161 10-75 (116)
181 KOG2891|consensus 65.2 9.3 0.0002 34.8 4.1 68 100-167 148-246 (445)
182 KOG4246|consensus 64.3 4.5 9.7E-05 42.3 2.1 11 101-111 145-155 (1194)
183 KOG4208|consensus 62.8 2.1 4.5E-05 37.3 -0.4 39 6-46 63-102 (214)
184 KOG1295|consensus 61.4 8.9 0.00019 36.6 3.4 68 101-168 7-77 (376)
185 PF09707 Cas_Cas2CT1978: CRISP 59.8 18 0.00038 27.2 4.1 48 101-151 25-72 (86)
186 KOG4246|consensus 58.0 4.9 0.00011 42.0 1.2 8 142-149 157-164 (1194)
187 KOG4008|consensus 57.2 18 0.00039 32.3 4.4 34 99-132 38-71 (261)
188 KOG4365|consensus 56.5 1.4 3E-05 42.5 -2.7 78 102-180 4-81 (572)
189 PF10567 Nab6_mRNP_bdg: RNA-re 56.3 23 0.0005 32.7 5.0 79 101-179 15-106 (309)
190 PLN03121 nucleic acid binding 55.5 0.95 2.1E-05 40.6 -3.8 53 6-63 19-72 (243)
191 PLN03120 nucleic acid binding 53.8 1.3 2.8E-05 40.3 -3.3 36 6-46 18-53 (260)
192 PRK11558 putative ssRNA endonu 51.6 25 0.00055 26.9 3.9 49 101-152 27-75 (97)
193 KOG0226|consensus 45.3 31 0.00067 31.3 4.0 74 102-176 97-173 (290)
194 KOG3702|consensus 41.5 12 0.00026 38.3 0.9 71 103-174 513-583 (681)
195 PF15513 DUF4651: Domain of un 40.1 61 0.0013 22.6 4.0 18 116-133 9-26 (62)
196 TIGR01873 cas_CT1978 CRISPR-as 38.8 25 0.00055 26.4 2.1 49 101-152 25-74 (87)
197 KOG4840|consensus 34.2 77 0.0017 28.4 4.7 74 101-179 37-116 (299)
198 KOG0116|consensus 33.2 5.8 0.00012 38.9 -2.7 44 3-48 299-342 (419)
199 PF05189 RTC_insert: RNA 3'-te 32.4 1E+02 0.0022 23.6 4.7 49 103-151 12-65 (103)
200 KOG1049|consensus 32.2 66 0.0014 32.3 4.4 9 145-153 181-189 (538)
201 KOG0130|consensus 32.0 3.5 7.5E-05 33.5 -3.6 37 5-43 85-121 (170)
202 PF11823 DUF3343: Protein of u 31.7 58 0.0013 23.2 3.1 29 144-172 2-30 (73)
203 KOG4388|consensus 31.3 82 0.0018 32.3 4.8 59 100-164 788-852 (880)
204 KOG0156|consensus 31.3 70 0.0015 32.2 4.6 61 103-173 34-97 (489)
205 COG0030 KsgA Dimethyladenosine 31.1 65 0.0014 29.5 3.9 33 102-134 96-128 (259)
206 PF03439 Spt5-NGN: Early trans 30.3 1E+02 0.0022 22.7 4.2 37 127-168 33-69 (84)
207 PRK11901 hypothetical protein; 28.9 1.3E+02 0.0028 28.5 5.4 60 101-165 245-306 (327)
208 COG3254 Uncharacterized conser 26.9 2.2E+02 0.0047 22.2 5.4 43 116-161 27-69 (105)
209 KOG0415|consensus 25.5 22 0.00048 33.7 -0.1 35 7-43 254-288 (479)
210 COG5193 LHP1 La protein, small 24.7 31 0.00067 33.3 0.7 47 115-161 196-244 (438)
211 PF02714 DUF221: Domain of unk 24.1 90 0.0019 29.2 3.7 36 146-183 1-36 (325)
212 PF00403 HMA: Heavy-metal-asso 23.0 2.4E+02 0.0052 18.8 5.3 54 103-162 1-58 (62)
213 CHL00123 rps6 ribosomal protei 22.5 2.9E+02 0.0063 21.0 5.6 58 103-162 10-81 (97)
214 COG0150 PurM Phosphoribosylami 22.5 45 0.00098 31.6 1.3 48 115-166 275-322 (345)
215 PF07292 NID: Nmi/IFP 35 domai 22.1 1.4E+02 0.003 22.5 3.6 32 146-178 1-34 (88)
216 PF15063 TC1: Thyroid cancer p 21.1 66 0.0014 23.4 1.6 25 105-129 29-53 (79)
217 PF00398 RrnaAD: Ribosomal RNA 20.6 64 0.0014 29.4 1.9 23 101-123 97-119 (262)
218 smart00195 DSPc Dual specifici 20.2 2.2E+02 0.0049 22.5 4.9 72 103-178 7-86 (138)
No 1
>KOG0113|consensus
Probab=100.00 E-value=5.4e-44 Score=314.31 Aligned_cols=200 Identities=73% Similarity=1.239 Sum_probs=194.6
Q ss_pred CCCCCChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHH
Q psy16184 1 MTQFLPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKDTPPPTRVETREERLERRRRERAEQVAYK 80 (363)
Q Consensus 1 ~~~~~p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (363)
||++|||+|+.||+|.|||+++||+..+|+.+++..|+||..|+..++.+.++++++.++.....++.....+.++...+
T Consensus 1 M~~~lp~nllaLF~pRpPl~y~pP~d~~p~kr~~~~~tGvA~~~~~~~~~~d~p~~~p~~t~~e~~er~~~~k~e~~~~~ 80 (335)
T KOG0113|consen 1 MTQFLPPNLLALFAPRPPLPYLPPTDKLPHKRKTNPYTGVAQYLSTFEDPKDAPPKFPVETPEEPLERGRREKTEKIPHK 80 (335)
T ss_pred CCccCCccHHHhcCCCCCcccCCccccChhhccCCCcccHHHHHHhhcCcccCCCcCcccchhhHHHhhhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHH
Q psy16184 81 LEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAY 160 (363)
Q Consensus 81 ~~~~~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai 160 (363)
+...++.|+|..++++..+|.+||||+-|+++++|..|+..|..||.|+.|.|+.|+.||+++|||||+|+++.++..|+
T Consensus 81 ~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AY 160 (335)
T KOG0113|consen 81 LERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAY 160 (335)
T ss_pred HHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceeCCEEEEEEeecccCCCCCCCCCCCCCCCCCCC
Q psy16184 161 KHADGKKIDGRRVLVDVERSRTVKGWLPRRLGGGLGGTRR 200 (363)
Q Consensus 161 ~~l~g~~i~g~~i~V~~a~~~~~~~~~~~~~~g~~g~~~~ 200 (363)
...+|..|+|+.|.|.+....++++|.|++.|||.||...
T Consensus 161 K~adG~~Idgrri~VDvERgRTvkgW~PRRLGGGLGg~r~ 200 (335)
T KOG0113|consen 161 KDADGIKIDGRRILVDVERGRTVKGWLPRRLGGGLGGRRY 200 (335)
T ss_pred HhccCceecCcEEEEEecccccccccccccccCCcCCccc
Confidence 9999999999999999999999999999999999998764
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.88 E-value=7.1e-23 Score=193.76 Aligned_cols=151 Identities=19% Similarity=0.340 Sum_probs=121.9
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRERAEQVAYKLEQE 84 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363)
.+|..+|..+++|..| -|+.++.|++++|| +||.|.++.+ .+...+....+..+.+.+...+
T Consensus 122 ~~L~~lF~~~G~V~~v-~i~~d~~tg~srGy-aFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~-------------- 185 (346)
T TIGR01659 122 RELYALFRTIGPINTC-RIMRDYKTGYSFGY-AFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR-------------- 185 (346)
T ss_pred HHHHHHHHhcCCEEEE-EEEecCCCCccCcE-EEEEEccHHHHHHHHHHcCCCccCCceeeeeccc--------------
Confidence 3589999999999888 46778899999999 9999977544 2333456666666555443211
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy16184 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 85 ~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
| .......++|||+|||+.+|+++|+++|.+||.|..|.|+.++.|++++|||||+|.+.++|++||..||
T Consensus 186 -----p----~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 256 (346)
T TIGR01659 186 -----P----GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN 256 (346)
T ss_pred -----c----cccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 0 0011234689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeCC--EEEEEEeecccC
Q psy16184 165 GKKIDG--RRVLVDVERSRT 182 (363)
Q Consensus 165 g~~i~g--~~i~V~~a~~~~ 182 (363)
++.|.+ +.|.|.++....
T Consensus 257 g~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 257 NVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CCccCCCceeEEEEECCccc
Confidence 999876 789999987643
No 3
>KOG0107|consensus
Probab=99.85 E-value=1.2e-20 Score=155.13 Aligned_cols=79 Identities=30% Similarity=0.640 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
-.++||||||+..+++.+|+.+|..||.|..|+|..+ +.|||||+|+++.+|+.|+.+|+|..|+|..|.|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3679999999999999999999999999999999775 47999999999999999999999999999999999997
Q ss_pred ccCC
Q psy16184 180 SRTV 183 (363)
Q Consensus 180 ~~~~ 183 (363)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 7554
No 4
>KOG0148|consensus
Probab=99.85 E-value=4.9e-22 Score=173.54 Aligned_cols=160 Identities=21% Similarity=0.342 Sum_probs=129.0
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 8 NLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRERAEQVAYKLEQEI 85 (363)
Q Consensus 8 ~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (363)
.|...|+|++-|..+. |.+|++|++++|| |||.|....+ .+...|...-+-.+.++...+.++-.+.-...+.
T Consensus 78 ~lr~aF~pFGevS~ak-virD~~T~KsKGY-gFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~lt--- 152 (321)
T KOG0148|consen 78 KLREAFAPFGEVSDAK-VIRDMNTGKSKGY-GFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLT--- 152 (321)
T ss_pred HHHHHhccccccccce-EeecccCCcccce-eEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCcc---
Confidence 5888999999999995 7779999999999 9999988655 5677888999988888877643322100000000
Q ss_pred hhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q psy16184 86 ALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADG 165 (363)
Q Consensus 86 ~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g 165 (363)
-...-+...+.+++||||||+..+|++.|+..|+.||.|.+|.|..+ +|||||.|.+.|.|..||..||+
T Consensus 153 ----fdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNn 222 (321)
T KOG0148|consen 153 ----FDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNN 222 (321)
T ss_pred ----HHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcC
Confidence 00112334556889999999999999999999999999999999887 49999999999999999999999
Q ss_pred ceeCCEEEEEEeecccC
Q psy16184 166 KKIDGRRVLVDVERSRT 182 (363)
Q Consensus 166 ~~i~g~~i~V~~a~~~~ 182 (363)
..|.|..+++.|-+...
T Consensus 223 tei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 223 TEIGGQLVRCSWGKEGD 239 (321)
T ss_pred ceeCceEEEEeccccCC
Confidence 99999999999987643
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.84 E-value=2.2e-21 Score=193.12 Aligned_cols=166 Identities=17% Similarity=0.250 Sum_probs=130.0
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRERAEQVAYKLEQE 84 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363)
.+|..+|.++|+|..+ -++.++.|++++|| +||.|.+... .+...+....+.++.+.+......
T Consensus 122 e~Lr~lF~~fG~I~sV-~I~~D~~TgkskGf-AFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~------------ 187 (612)
T TIGR01645 122 DTIRRAFDPFGPIKSI-NMSWDPATGKHKGF-AFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM------------ 187 (612)
T ss_pred HHHHHHHHccCCEEEE-EEeecCCCCCcCCe-EEEEeCcHHHHHHHHHhcCCeEEecceeeecccccc------------
Confidence 4689999999999988 46778999999999 9999988655 333456777777777665421000
Q ss_pred HhhcCCC-CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHh
Q psy16184 85 IALWDPN-SFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163 (363)
Q Consensus 85 ~~~~~p~-~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l 163 (363)
....+. ..........++|||+||++.+++++|+.+|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|
T Consensus 188 -p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~am 266 (612)
T TIGR01645 188 -PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 266 (612)
T ss_pred -cccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHh
Confidence 000000 000111224579999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeCCEEEEEEeecccCCCCCC
Q psy16184 164 DGKKIDGRRVLVDVERSRTVKGWL 187 (363)
Q Consensus 164 ~g~~i~g~~i~V~~a~~~~~~~~~ 187 (363)
|+..|+|+.|.|.++...+...+.
T Consensus 267 Ng~elgGr~LrV~kAi~pP~~~~~ 290 (612)
T TIGR01645 267 NLFDLGGQYLRVGKCVTPPDALLQ 290 (612)
T ss_pred CCCeeCCeEEEEEecCCCccccCC
Confidence 999999999999999875544443
No 6
>KOG4207|consensus
Probab=99.84 E-value=3.5e-20 Score=156.07 Aligned_cols=83 Identities=31% Similarity=0.615 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
+...+|.|-||.+.|+.++|..+|++||.|-+|.|+.|+.|..++|||||-|....+|+.|+++|+|.+|+|+.|.|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy16184 179 RSR 181 (363)
Q Consensus 179 ~~~ 181 (363)
+..
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 753
No 7
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.84 E-value=7.8e-20 Score=152.18 Aligned_cols=84 Identities=26% Similarity=0.576 Sum_probs=80.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
..++|||+||++.+|+++|+++|.+||.|..|.|+.++.|++++|||||+|.+.++|+.||..||+..|+|+.|.|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccCC
Q psy16184 180 SRTV 183 (363)
Q Consensus 180 ~~~~ 183 (363)
.+..
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6554
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.80 E-value=4.7e-20 Score=182.97 Aligned_cols=161 Identities=17% Similarity=0.347 Sum_probs=123.6
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC-CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE-DPKDTPPPTRVETREERLERRRRERAEQVAYKLEQEI 85 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (363)
.+|..+|..+|+|..+ -++.+..+++++|| +||.|.+... ..+..+....+.+..+.++....++... ...
T Consensus 104 ~~l~~~F~~~G~v~~v-~i~~d~~~~~skg~-afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~------~~~ 175 (457)
T TIGR01622 104 RDLYEFFSKVGKVRDV-QCIKDRNSRRSKGV-AYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRA------AKA 175 (457)
T ss_pred HHHHHHHHhcCCeeEE-EEeecCCCCCcceE-EEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhh------hhc
Confidence 4689999999999887 45668889999999 9999988544 2233455566666555443321111100 000
Q ss_pred hhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q psy16184 86 ALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADG 165 (363)
Q Consensus 86 ~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g 165 (363)
.. ......+..++|||+|||..+|+++|.++|.+||.|..|.|+.+..+|.++|||||+|.+.++|..||..|||
T Consensus 176 ~~-----~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g 250 (457)
T TIGR01622 176 AT-----HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNG 250 (457)
T ss_pred cc-----ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCC
Confidence 00 0011122368999999999999999999999999999999999998999999999999999999999999999
Q ss_pred ceeCCEEEEEEeecc
Q psy16184 166 KKIDGRRVLVDVERS 180 (363)
Q Consensus 166 ~~i~g~~i~V~~a~~ 180 (363)
..|.|+.|.|.|+..
T Consensus 251 ~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 251 FELAGRPIKVGYAQD 265 (457)
T ss_pred cEECCEEEEEEEccC
Confidence 999999999999763
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.80 E-value=1.9e-20 Score=179.55 Aligned_cols=82 Identities=18% Similarity=0.374 Sum_probs=78.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
+.+|||+|||+.+++++|.++|++||.|..|.|+.|..|+.++|||||+|.+.++|..||..|||..|+|+.|.|.|+..
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cC
Q psy16184 181 RT 182 (363)
Q Consensus 181 ~~ 182 (363)
+.
T Consensus 349 ~~ 350 (352)
T TIGR01661 349 KA 350 (352)
T ss_pred CC
Confidence 53
No 10
>KOG0127|consensus
Probab=99.75 E-value=8.1e-19 Score=166.47 Aligned_cols=172 Identities=23% Similarity=0.367 Sum_probs=121.2
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRERAEQVAYKLEQE 84 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363)
.+|..+|+..+||..| .|...+.+..++|| |||+|.-... .+........++++.+.+..++.....+...+. +.
T Consensus 20 ~qL~e~FS~vGPik~~-~vVt~~gs~~~RGf-gfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~-e~ 96 (678)
T KOG0127|consen 20 EQLEEFFSYVGPIKHA-VVVTNKGSSEKRGF-GFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKG-EN 96 (678)
T ss_pred hHHHHhhhcccCccee-EEecCCCcccccCc-cceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccc-cc
Confidence 4689999999999999 45557888999999 9999854332 222233444556655554432222111100000 00
Q ss_pred HhhcCCCC--CCCC--CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHH
Q psy16184 85 IALWDPNS--FPNA--TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAY 160 (363)
Q Consensus 85 ~~~~~p~~--~~~~--~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai 160 (363)
.+...|.. .+.. ...+...|+|.||||.|...+|+.+|+.||.|..|.|+..+ .|+.+|||||+|....+|..||
T Consensus 97 ~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al 175 (678)
T KOG0127|consen 97 KAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKAL 175 (678)
T ss_pred hhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHH
Confidence 00111111 1111 12346689999999999999999999999999999999765 5555699999999999999999
Q ss_pred HHhCCceeCCEEEEEEeecccC
Q psy16184 161 KHADGKKIDGRRVLVDVERSRT 182 (363)
Q Consensus 161 ~~l~g~~i~g~~i~V~~a~~~~ 182 (363)
..||++.|+|++|-|.||-++.
T Consensus 176 ~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 176 EFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred HhccCceecCceeEEeeecccc
Confidence 9999999999999999997754
No 11
>KOG0415|consensus
Probab=99.74 E-value=1.8e-17 Score=149.92 Aligned_cols=91 Identities=30% Similarity=0.476 Sum_probs=84.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
.+|.+.|||..|++-||.++|.-+|+.||.|..|.|+.|..||.+..||||+|++.+++++|+-.|++..|+.+.|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCCC
Q psy16184 178 ERSRTVKGWLP 188 (363)
Q Consensus 178 a~~~~~~~~~~ 188 (363)
+.....-.|.+
T Consensus 316 SQSVsk~k~r~ 326 (479)
T KOG0415|consen 316 SQSVSKVKYRQ 326 (479)
T ss_pred hhhhhhhhccc
Confidence 98765544544
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.73 E-value=1.2e-18 Score=166.96 Aligned_cols=150 Identities=15% Similarity=0.316 Sum_probs=119.6
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRERAEQVAYKLEQE 84 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363)
.+|..+|..+|||..+ -|+.++.+++++|| +||.|..... .+...+....+.++.+.++..
T Consensus 18 ~~l~~~F~~~G~i~~v-~i~~d~~~g~s~g~-afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a--------------- 80 (352)
T TIGR01661 18 EEIRSLFTSIGEIESC-KLVRDKVTGQSLGY-GFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA--------------- 80 (352)
T ss_pred HHHHHHHHccCCEEEE-EEEEcCCCCccceE-EEEEECcHHHHHHHHhhcccEEECCeeEEEEee---------------
Confidence 4699999999999988 46778889999999 9999977543 223345555555554443321
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy16184 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 85 ~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
.| .......++|||+|||..+++++|..+|..||.|..+.|+.+..++.++|||||+|.+.++|..||..||
T Consensus 81 ----~~----~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~ 152 (352)
T TIGR01661 81 ----RP----SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLN 152 (352)
T ss_pred ----cc----cccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 00 1111235689999999999999999999999999999999988889999999999999999999999999
Q ss_pred CceeCC--EEEEEEeeccc
Q psy16184 165 GKKIDG--RRVLVDVERSR 181 (363)
Q Consensus 165 g~~i~g--~~i~V~~a~~~ 181 (363)
|..+.| ..|.|.++...
T Consensus 153 g~~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 153 GTTPSGCTEPITVKFANNP 171 (352)
T ss_pred CCccCCCceeEEEEECCCC
Confidence 999877 67888888654
No 13
>KOG0121|consensus
Probab=99.72 E-value=1.3e-17 Score=130.22 Aligned_cols=80 Identities=24% Similarity=0.519 Sum_probs=77.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
++|||||||++.|+|++|.++|+.||.|..|.|-.|+.+..+.|||||+|.+.++|..|+..+||+.|+.++|.|.|...
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999754
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.71 E-value=5.3e-18 Score=172.44 Aligned_cols=164 Identities=16% Similarity=0.302 Sum_probs=116.1
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcc----cHHHHHHHHHHHHHH--HHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVE----TREERLERRRRERAE--QVA 78 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~ 78 (363)
.+|..+|..+|.|..+. ++.+. ++.++|| +||.|.+... .+...+....+. +..+.+...+..... ...
T Consensus 193 e~L~~~F~~fG~i~~~~-i~~~~-~g~~~G~-afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~ 269 (562)
T TIGR01628 193 DKLRELFAKFGEITSAA-VMKDG-SGRSRGF-AFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELR 269 (562)
T ss_pred HHHHHHHHhcCCEEEEE-EEECC-CCCcccE-EEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHH
Confidence 46889999999998873 44453 6889999 9999988544 222233444443 322211111000000 000
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHH
Q psy16184 79 YKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHS 158 (363)
Q Consensus 79 ~~~~~~~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~ 158 (363)
.+..... .........++|||+||++.+|+++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+
T Consensus 270 ~~~~~~~-------~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~ 341 (562)
T TIGR01628 270 RKFEELQ-------QERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANR 341 (562)
T ss_pred hhHHhhh-------hhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHH
Confidence 0000000 00112234678999999999999999999999999999999998 689999999999999999999
Q ss_pred HHHHhCCceeCCEEEEEEeeccc
Q psy16184 159 AYKHADGKKIDGRRVLVDVERSR 181 (363)
Q Consensus 159 Ai~~l~g~~i~g~~i~V~~a~~~ 181 (363)
||..|||..|+|+.|.|.+|..+
T Consensus 342 A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 342 AVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred HHHHhcCCeeCCceeEEEeccCc
Confidence 99999999999999999998754
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.69 E-value=3.6e-17 Score=164.52 Aligned_cols=149 Identities=16% Similarity=0.219 Sum_probs=103.2
Q ss_pred CCCCCCCccccccccccC-CCCCCCCCCCcccHHHHHHHHHHHHHH-HHHHHHHH-----HHhhcCCCCCCCCCCCCCCe
Q psy16184 31 EKKTHGYSGIAAFLNEFE-DPKDTPPPTRVETREERLERRRRERAE-QVAYKLEQ-----EIALWDPNSFPNATMDPFKT 103 (363)
Q Consensus 31 t~~s~g~~g~v~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~p~~~~~~~~~~~~~ 103 (363)
..+.+|| +||.|.+..+ ..+.++....+.+..+.+......... +....... ..................++
T Consensus 219 ~~~~kg~-afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (509)
T TIGR01642 219 INKEKNF-AFLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDR 297 (509)
T ss_pred ECCCCCE-EEEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCE
Confidence 3567899 9999988555 233456666666654443321000000 00000000 00000000011112335679
Q ss_pred EEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 104 l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
|||+|||+.+|+++|.++|..||.|..|.|+.+..+|.++|||||+|.+.++|..||..|||..|.|+.|.|.++..
T Consensus 298 l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 298 IYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999864
No 16
>KOG0145|consensus
Probab=99.69 E-value=6.1e-18 Score=147.17 Aligned_cols=155 Identities=19% Similarity=0.352 Sum_probs=119.8
Q ss_pred CCCCChh-----hhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHHHH
Q psy16184 2 TQFLPPN-----LLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRERA 74 (363)
Q Consensus 2 ~~~~p~~-----l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (363)
.+|||+. |..||...+-|..|. +.+|..|+.+-|| |||.|+.+.. .+...++.-.+..+.+++..
T Consensus 46 vNYLPQ~MTqdE~rSLF~SiGeiEScK-LvRDKitGqSLGY-GFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy------ 117 (360)
T KOG0145|consen 46 VNYLPQNMTQDELRSLFGSIGEIESCK-LVRDKITGQSLGY-GFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY------ 117 (360)
T ss_pred eeecccccCHHHHHHHhhcccceeeee-eeecccccccccc-ceeeecChHHHHHHHhhhcceeeccceEEEEe------
Confidence 4567764 889999999999995 7789999999999 9999977543 11222222222222222211
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHH
Q psy16184 75 EQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHER 154 (363)
Q Consensus 75 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~ 154 (363)
..| ........+|||.+||..+|..+|+++|++||.|..-.|+.|..||.++|.|||.|....
T Consensus 118 -------------ARP----Ss~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~ 180 (360)
T KOG0145|consen 118 -------------ARP----SSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRI 180 (360)
T ss_pred -------------ccC----ChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchh
Confidence 111 112223458999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceeCCE--EEEEEeeccc
Q psy16184 155 DMHSAYKHADGKKIDGR--RVLVDVERSR 181 (363)
Q Consensus 155 ~a~~Ai~~l~g~~i~g~--~i~V~~a~~~ 181 (363)
+|+.||..|||..-.|. +|.|+++...
T Consensus 181 EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 181 EAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred HHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 99999999999876654 7999999754
No 17
>KOG0147|consensus
Probab=99.68 E-value=2.2e-17 Score=157.51 Aligned_cols=164 Identities=20% Similarity=0.354 Sum_probs=125.4
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC-CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE-DPKDTPPPTRVETREERLERRRRERAEQVAYKLEQE 84 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363)
|=+|..||...++|-.+- +..+-.+++++|+ ++|.|.+... ..+.++.++.+.+..+.++.-.+++..
T Consensus 193 pRdL~efFs~~gkVrdVr-iI~Dr~s~rskgi-~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr--------- 261 (549)
T KOG0147|consen 193 PRDLEEFFSIVGKVRDVR-IIGDRNSRRSKGI-AYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNR--------- 261 (549)
T ss_pred chhHHHHHHhhcCcceeE-eeccccchhhcce-eEEEEecccchhhHhhhcCCcccCceeEecccHHHHHH---------
Confidence 567999999999999884 4448889999999 9999987555 233456666665555444432222221
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy16184 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 85 ~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
.+...+.........|...||||||.+++++++|..+|+.||.|..|.++.|..||.++|||||+|.+.++|.+|+..||
T Consensus 262 ~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~ln 341 (549)
T KOG0147|consen 262 AANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLN 341 (549)
T ss_pred HHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhc
Confidence 11111111112223344459999999999999999999999999999999998899999999999999999999999999
Q ss_pred CceeCCEEEEEEeecc
Q psy16184 165 GKKIDGRRVLVDVERS 180 (363)
Q Consensus 165 g~~i~g~~i~V~~a~~ 180 (363)
|.+|.|+.|+|.....
T Consensus 342 gfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 342 GFELAGRLIKVSVVTE 357 (549)
T ss_pred cceecCceEEEEEeee
Confidence 9999999999987654
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.68 E-value=1.8e-17 Score=168.56 Aligned_cols=151 Identities=22% Similarity=0.374 Sum_probs=119.7
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRERAEQVAYKLEQ 83 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (363)
..+|..+|..+|+|..+ -|+.+..|+++.|| +||.|.+... .+...+....+.++.+.+....
T Consensus 14 e~~L~~~F~~~G~v~~v-~v~~d~~t~~s~G~-afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~------------- 78 (562)
T TIGR01628 14 EAKLYDLFKPFGPVLSV-RVCRDSVTRRSLGY-GYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ------------- 78 (562)
T ss_pred HHHHHHHHHhcCCEEEE-EEEecCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc-------------
Confidence 34699999999999887 47778999999999 9999988554 2333445555666555443211
Q ss_pred HHhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHh
Q psy16184 84 EIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163 (363)
Q Consensus 84 ~~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l 163 (363)
..+........+|||+||+.++++++|.++|+.||.|..|.|+.+ .+|+++|||||+|.+.++|..||..|
T Consensus 79 --------~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~l 149 (562)
T TIGR01628 79 --------RDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKV 149 (562)
T ss_pred --------ccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHh
Confidence 011111223458999999999999999999999999999999988 47889999999999999999999999
Q ss_pred CCceeCCEEEEEEeecc
Q psy16184 164 DGKKIDGRRVLVDVERS 180 (363)
Q Consensus 164 ~g~~i~g~~i~V~~a~~ 180 (363)
||..+.|+.|.|.....
T Consensus 150 ng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 150 NGMLLNDKEVYVGRFIK 166 (562)
T ss_pred cccEecCceEEEecccc
Confidence 99999999999976544
No 19
>KOG0117|consensus
Probab=99.67 E-value=2.8e-17 Score=152.92 Aligned_cols=170 Identities=24% Similarity=0.454 Sum_probs=117.2
Q ss_pred CCCCChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCccc------------------
Q psy16184 2 TQFLPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVET------------------ 61 (363)
Q Consensus 2 ~~~~p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~------------------ 61 (363)
++.+..+|+-||...++|..| -+|++|.++.++|| .||+|.+..+ .+...+..++|..
T Consensus 93 rD~~EdeLvplfEkiG~I~el-RLMmD~~sG~nRGY-AFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG 170 (506)
T KOG0117|consen 93 RDVFEDELVPLFEKIGKIYEL-RLMMDPFSGDNRGY-AFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIG 170 (506)
T ss_pred ccccchhhHHHHHhccceeeE-EEeecccCCCCcce-EEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEec
Confidence 355677899999999999999 58889999999999 9999988554 2222333332210
Q ss_pred -------HHHHHHHHHH-HH------------------------------HHHHHHHH-HHHHhhcC---------CCCC
Q psy16184 62 -------REERLERRRR-ER------------------------------AEQVAYKL-EQEIALWD---------PNSF 93 (363)
Q Consensus 62 -------~~~~~~~~~~-~~------------------------------~~~~~~~~-~~~~~~~~---------p~~~ 93 (363)
+.+.++..+. .. ++....++ .-....|. |...
T Consensus 171 ~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e 250 (506)
T KOG0117|consen 171 NIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEE 250 (506)
T ss_pred cCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccC
Confidence 0111110000 00 00000000 00001111 1111
Q ss_pred CCC-CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEE
Q psy16184 94 PNA-TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 172 (363)
Q Consensus 94 ~~~-~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 172 (363)
+.. .....+.|||.||+.+||++.|+++|..||.|..|+.+.| ||||.|.+.++|.+|+..|||++|+|..
T Consensus 251 ~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~ 322 (506)
T KOG0117|consen 251 PDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSP 322 (506)
T ss_pred CChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCce
Confidence 111 1123568999999999999999999999999999999876 9999999999999999999999999999
Q ss_pred EEEEeeccc
Q psy16184 173 VLVDVERSR 181 (363)
Q Consensus 173 i~V~~a~~~ 181 (363)
|.|.+|++.
T Consensus 323 iEvtLAKP~ 331 (506)
T KOG0117|consen 323 IEVTLAKPV 331 (506)
T ss_pred EEEEecCCh
Confidence 999999874
No 20
>KOG0122|consensus
Probab=99.66 E-value=3.2e-16 Score=135.56 Aligned_cols=83 Identities=25% Similarity=0.458 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
+..++|-|.||+.++++++|+++|.+||.|..|.|..|+.||.++|||||+|.+.++|.+||..|||+-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy16184 179 RSR 181 (363)
Q Consensus 179 ~~~ 181 (363)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 874
No 21
>KOG4205|consensus
Probab=99.66 E-value=1.7e-16 Score=146.29 Aligned_cols=158 Identities=20% Similarity=0.354 Sum_probs=133.0
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC-CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE-DPKDTPPPTRVETREERLERRRRERAEQVAYKLEQE 84 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363)
...|..+|..++-|..| .+|++|.|++++|| |||.|.+... .....+..+.|+++.++++++.....+
T Consensus 20 ee~Lr~yf~~~Gev~d~-~vm~d~~t~rsrgF-gfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~--------- 88 (311)
T KOG4205|consen 20 EESLREYFSQFGEVTDC-VVMRDPSTGRSRGF-GFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQ--------- 88 (311)
T ss_pred HHHHHHHhcccCceeeE-EEeccCCCCCcccc-cceecCCCcchheeecccccccCCccccceeccCcccc---------
Confidence 34688999999999999 79999999999999 9999986555 667778899999998888763221110
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy16184 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 85 ~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
........+.+||||+||..+++.+|+++|.+||.|..+.|+.|..+..++||+||+|.+.+.+.+++. +.
T Consensus 89 --------~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~ 159 (311)
T KOG4205|consen 89 --------TKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QK 159 (311)
T ss_pred --------cccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cc
Confidence 000111246799999999999999999999999999999999999999999999999999999999988 68
Q ss_pred CceeCCEEEEEEeecccCC
Q psy16184 165 GKKIDGRRVLVDVERSRTV 183 (363)
Q Consensus 165 g~~i~g~~i~V~~a~~~~~ 183 (363)
-+.|+|+.|.|..|.++..
T Consensus 160 f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred eeeecCceeeEeeccchhh
Confidence 8999999999999988654
No 22
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=5.9e-16 Score=112.44 Aligned_cols=70 Identities=39% Similarity=0.755 Sum_probs=67.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEE
Q psy16184 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 174 (363)
Q Consensus 104 l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 174 (363)
|||+|||+.+|+++|.++|.+||.|..+.|..+ .++..+|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 6889999999999999999999999999999999885
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=3.8e-16 Score=148.01 Aligned_cols=83 Identities=25% Similarity=0.443 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
....++|||+|||+++|+++|+++|..||.|+.|.|+.++.|++++|||||+|.++++|..||..||+..|.++.|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q psy16184 178 ERS 180 (363)
Q Consensus 178 a~~ 180 (363)
+.+
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 865
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.64 E-value=2.6e-15 Score=150.00 Aligned_cols=80 Identities=30% Similarity=0.633 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
..++|||+||++.+++++|+++|.+||.|..|.|+.|+.|++++|||||+|.+.++|..||..|||..|.|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999998643
No 25
>KOG0149|consensus
Probab=99.62 E-value=5.7e-16 Score=133.61 Aligned_cols=79 Identities=29% Similarity=0.612 Sum_probs=74.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
.++||||||+|.++.+.|+.+|++||+|.++.|+.|+.||+++|||||+|.+.++|..|++. .+-.|+|++..|++|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 56899999999999999999999999999999999999999999999999999999999996 45789999999998753
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.62 E-value=6.5e-16 Score=153.96 Aligned_cols=77 Identities=22% Similarity=0.515 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhh--CCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVY--GPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~--G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..++|||+||++.+|+++|+++|+.| |.|..|.++. +||||+|.+.++|.+||..||+..|+|+.|.|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 9999998753 6999999999999999999999999999999999
Q ss_pred ecccCCC
Q psy16184 178 ERSRTVK 184 (363)
Q Consensus 178 a~~~~~~ 184 (363)
+++....
T Consensus 304 Akp~~~~ 310 (578)
T TIGR01648 304 AKPVDKK 310 (578)
T ss_pred ccCCCcc
Confidence 9886554
No 27
>KOG0145|consensus
Probab=99.61 E-value=2.6e-16 Score=137.03 Aligned_cols=80 Identities=19% Similarity=0.354 Sum_probs=76.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
..+|||-||.+++.+..|.++|.+||.|..|+|+.|..|.+++|||||++.+-++|..||..|||..+.++.|.|.+...
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999998754
No 28
>KOG0131|consensus
Probab=99.61 E-value=3.1e-15 Score=124.07 Aligned_cols=149 Identities=24% Similarity=0.389 Sum_probs=116.2
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKDTPPPTRVETREERLERRRRERAEQVAYKLEQEIA 86 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (363)
+-|..||-+.+|+..+ -++++-.|....|| ||+.|.++... +.+-++-.+..
T Consensus 24 ~~l~EL~iqagpVv~i-~iPkDrv~~~~qGy-gF~Ef~~eeda--------------------------dYAikiln~Vk 75 (203)
T KOG0131|consen 24 ELLYELFIQAGPVVNL-HIPKDRVTQKHQGY-GFAEFRTEEDA--------------------------DYAIKILNMVK 75 (203)
T ss_pred HHHHHHHHhcCceeee-ecchhhhcccccce-eEEEEechhhh--------------------------HHHHHHHHHHH
Confidence 3478899999999988 47788889999999 99999665421 11222222333
Q ss_pred hcCCC------CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccE-EEEeccCCCCCcceEEEEEecCHHHHHHH
Q psy16184 87 LWDPN------SFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKK-IVMVHNKVTGKPRGYAFIEYEHERDMHSA 159 (363)
Q Consensus 87 ~~~p~------~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~-v~i~~d~~t~~~~g~afV~f~~~~~a~~A 159 (363)
.++-. .......+.+.+|||+||.+.+++..|...|+.||.|.. -.|+.+..||.++|||||.|.+.+.+.+|
T Consensus 76 LYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~a 155 (203)
T KOG0131|consen 76 LYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAA 155 (203)
T ss_pred hcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHH
Confidence 33211 111222334579999999999999999999999998764 47888989999999999999999999999
Q ss_pred HHHhCCceeCCEEEEEEeecccCC
Q psy16184 160 YKHADGKKIDGRRVLVDVERSRTV 183 (363)
Q Consensus 160 i~~l~g~~i~g~~i~V~~a~~~~~ 183 (363)
|..|||..++.++|.|.++..+..
T Consensus 156 i~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 156 IGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred HHHhccchhcCCceEEEEEEecCC
Confidence 999999999999999999976543
No 29
>KOG0127|consensus
Probab=99.59 E-value=9.4e-16 Score=145.86 Aligned_cols=81 Identities=31% Similarity=0.597 Sum_probs=75.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHh-----CC-ceeCCEEEE
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA-----DG-KKIDGRRVL 174 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l-----~g-~~i~g~~i~ 174 (363)
..+|||.|||+++|++.|.++|.+||+|..+.|+.++.|++++|.|||.|.++..|..||.+. .| ..|+|+.|.
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 369999999999999999999999999999999999999999999999999999999999975 23 688999999
Q ss_pred EEeeccc
Q psy16184 175 VDVERSR 181 (363)
Q Consensus 175 V~~a~~~ 181 (363)
|..|-++
T Consensus 372 v~~Av~R 378 (678)
T KOG0127|consen 372 VTLAVTR 378 (678)
T ss_pred eeeccch
Confidence 9998653
No 30
>KOG0124|consensus
Probab=99.59 E-value=2e-15 Score=137.21 Aligned_cols=158 Identities=19% Similarity=0.307 Sum_probs=115.0
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHH-HHHHHHHHHHHHHHH
Q psy16184 8 NLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERR-RRERAEQVAYKLEQE 84 (363)
Q Consensus 8 ~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (363)
-|...|.|+|||..+. +.+||.|++.+|| .||.|.-... -+.+.++..-+.++-+++-+- ...+++..--.++++
T Consensus 129 tiR~AF~PFGPIKSIn-MSWDp~T~kHKgF-AFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqee 206 (544)
T KOG0124|consen 129 TIRRAFDPFGPIKSIN-MSWDPATGKHKGF-AFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEE 206 (544)
T ss_pred HHHhhccCCCCcceee-cccccccccccce-EEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHH
Confidence 4677899999999994 8899999999999 5555533221 111223333333333322210 000111111111111
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy16184 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 85 ~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
.. ..+.|||..+.+++++++|+..|+.||+|..|.+..++.++.++||+||+|.+..+...||..||
T Consensus 207 Ak-------------~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 207 AK-------------KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred HH-------------hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 11 24689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeCCEEEEEEeecc
Q psy16184 165 GKKIDGRRVLVDVERS 180 (363)
Q Consensus 165 g~~i~g~~i~V~~a~~ 180 (363)
=..|+|..|.|-.+-.
T Consensus 274 lFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCVT 289 (544)
T ss_pred hhhcccceEecccccC
Confidence 9999999999987654
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.58 E-value=1.4e-16 Score=160.21 Aligned_cols=171 Identities=15% Similarity=0.175 Sum_probs=113.0
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHH----
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRERAEQVAYK---- 80 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 80 (363)
.+|..+|+.+|+|..+ .+..++.++.++|| +||.|.+... .+...+....+.+..+.++.............
T Consensus 310 ~~l~~~f~~~G~i~~~-~~~~~~~~g~~~g~-afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~ 387 (509)
T TIGR01642 310 DQIKELLESFGDLKAF-NLIKDIATGLSKGY-AFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGM 387 (509)
T ss_pred HHHHHHHHhcCCeeEE-EEEecCCCCCcCeE-EEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccc
Confidence 4588999999999887 45668889999999 9999977443 23334555555554333222110000000000
Q ss_pred --HHHHHhhcCCCCCCCCCCCCCCeEEEcCCCCCC----------CHHHHHHHHHhhCCccEEEEeccC---CCCCcceE
Q psy16184 81 --LEQEIALWDPNSFPNATMDPFKTLFIARVNYDT----------SESKLRREFEVYGPIKKIVMVHNK---VTGKPRGY 145 (363)
Q Consensus 81 --~~~~~~~~~p~~~~~~~~~~~~~l~V~nL~~~~----------t~~~L~~~F~~~G~i~~v~i~~d~---~t~~~~g~ 145 (363)
+...... ...........++.+|+|.||...- ..++|+++|.+||.|..|.|+.+. .++...||
T Consensus 388 ~~~~~~~~~-~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~ 466 (509)
T TIGR01642 388 APVTLLAKA-LSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGK 466 (509)
T ss_pred ccccccccc-chhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcce
Confidence 0000000 0000111223467889999996321 236789999999999999998642 34566899
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 146 AFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 146 afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
|||+|.+.++|++||..|||..|+|+.|.|.|...
T Consensus 467 ~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 467 VFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 99999999999999999999999999999999754
No 32
>KOG0126|consensus
Probab=99.58 E-value=1.6e-16 Score=131.58 Aligned_cols=81 Identities=32% Similarity=0.541 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
.+.-|||||||+.+|+.+|.-+|++||+|+.|.|+.|+.||+++||||+.|++..+..-|+..|||..|.|+.|.|.+..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred c
Q psy16184 180 S 180 (363)
Q Consensus 180 ~ 180 (363)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 4
No 33
>KOG0105|consensus
Probab=99.58 E-value=1.1e-14 Score=121.00 Aligned_cols=80 Identities=28% Similarity=0.486 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
..++|||||||.+|.+.+|+++|-+||.|.+|.|... ..+.+||||+|+++.+|+.||..-+|..++|..|.|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4679999999999999999999999999999998532 2345799999999999999999999999999999999997
Q ss_pred ccC
Q psy16184 180 SRT 182 (363)
Q Consensus 180 ~~~ 182 (363)
.-.
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 643
No 34
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.57 E-value=1.1e-14 Score=129.82 Aligned_cols=76 Identities=16% Similarity=0.302 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
.++|||+||++.+|+++|+++|+.||.|..|.|+.+.. .+|||||+|.+.++|..||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 56999999999999999999999999999999988753 46899999999999999996 999999999999999864
No 35
>KOG0130|consensus
Probab=99.57 E-value=5.9e-15 Score=116.45 Aligned_cols=84 Identities=27% Similarity=0.444 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.....|||+++...+|+++|.+.|..||+|+.|.|-.|..||-.+|||+|+|++.+.|++||..|||..|.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q psy16184 179 RSRT 182 (363)
Q Consensus 179 ~~~~ 182 (363)
..+.
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 7643
No 36
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=1.2e-14 Score=105.84 Aligned_cols=70 Identities=37% Similarity=0.753 Sum_probs=64.8
Q ss_pred EEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEE
Q psy16184 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 174 (363)
Q Consensus 104 l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 174 (363)
|||+|||+++++++|.++|..||.|..+.+..++. +..+|+|||+|.+.++|..|+..+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 89999999999999999999999999999999884
No 37
>KOG0111|consensus
Probab=99.54 E-value=5.2e-15 Score=126.01 Aligned_cols=85 Identities=24% Similarity=0.479 Sum_probs=80.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
...++||||+|...+|+.-|...|-+||.|..|.|+.|-.+++.+|||||+|...++|.+||..||+.+|.|+.|.|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q psy16184 179 RSRTV 183 (363)
Q Consensus 179 ~~~~~ 183 (363)
++...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 98543
No 38
>PLN03213 repressor of silencing 3; Provisional
Probab=99.53 E-value=2.6e-14 Score=134.58 Aligned_cols=77 Identities=16% Similarity=0.367 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCH--HHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE--RDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~--~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
...+||||||++.+|+++|..+|..||.|..|.|+ +.|| +|||||+|.+. .++.+||..|||..+.|+.|+|+.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 35689999999999999999999999999999999 4567 89999999987 789999999999999999999999
Q ss_pred ecc
Q psy16184 178 ERS 180 (363)
Q Consensus 178 a~~ 180 (363)
|++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 875
No 39
>KOG0144|consensus
Probab=99.53 E-value=1.2e-14 Score=134.97 Aligned_cols=147 Identities=17% Similarity=0.303 Sum_probs=108.8
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCC--CCCC------CC--CCCcccHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFED--PKDT------PP--PTRVETREERLERRRRERAEQ 76 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~--~~~~------~~--~~~~~~~~~~~~~~~~~~~~~ 76 (363)
-+|..+|++++-|-.+. |.+|..|+.++|+ =||.|....+. +..+ ++ -+.|..+-..-
T Consensus 49 ~dlr~lFe~yg~V~ein-l~kDk~t~~s~gc-CFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~---------- 116 (510)
T KOG0144|consen 49 KDLRELFEKYGNVYEIN-LIKDKSTGQSKGC-CFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADG---------- 116 (510)
T ss_pred HHHHHHHHHhCceeEEE-eecccccCcccce-EEEEeccHHHHHHHHHHhhcccccCCCCcceeecccch----------
Confidence 47899999999988884 6779999999999 66666442210 0000 00 01111111110
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHH
Q psy16184 77 VAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156 (363)
Q Consensus 77 ~~~~~~~~~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a 156 (363)
.........+||||-|+..+||.+|+++|.+||.|++|.|+.+. .+.++|||||+|.+.+.|
T Consensus 117 -----------------E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A 178 (510)
T KOG0144|consen 117 -----------------ERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMA 178 (510)
T ss_pred -----------------hhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHH
Confidence 11111335689999999999999999999999999999999984 799999999999999999
Q ss_pred HHHHHHhCCce-eC--CEEEEEEeecccCC
Q psy16184 157 HSAYKHADGKK-ID--GRRVLVDVERSRTV 183 (363)
Q Consensus 157 ~~Ai~~l~g~~-i~--g~~i~V~~a~~~~~ 183 (363)
..||+.|||.. +. ..+|.|.||.+...
T Consensus 179 ~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 179 VAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred HHHHHhhccceeeccCCCceEEEecccCCC
Confidence 99999999964 44 45899999987644
No 40
>KOG0125|consensus
Probab=99.52 E-value=4.5e-14 Score=127.05 Aligned_cols=82 Identities=23% Similarity=0.497 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
.+..+.|+|.|||+...+.||..+|.+||.|.+|.|+.+ .-.++|||||+|++.++|++|-+.|||..|.|++|.|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 344679999999999999999999999999999999986 355789999999999999999999999999999999999
Q ss_pred eccc
Q psy16184 178 ERSR 181 (363)
Q Consensus 178 a~~~ 181 (363)
|..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8764
No 41
>KOG0123|consensus
Probab=99.51 E-value=1.1e-14 Score=138.75 Aligned_cols=141 Identities=21% Similarity=0.384 Sum_probs=116.0
Q ss_pred CChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Q psy16184 5 LPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRERAEQVAYKLE 82 (363)
Q Consensus 5 ~p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (363)
..+.|..+|.+.+|+..+ -|.++. | +-|| |+|.|..... .+.++++...+.++.+++....
T Consensus 11 ~e~~l~~~f~~~~~v~s~-rvc~d~-t--slgy-~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~------------ 73 (369)
T KOG0123|consen 11 TEAMLFDKFSPAGPVLSI-RVCRDA-T--SLGY-AYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ------------ 73 (369)
T ss_pred ChHHHHHHhcccCCceeE-EEeecC-C--ccce-EEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc------------
Confidence 457899999999999988 477788 7 9999 9999977554 3444566666666666655411
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHH
Q psy16184 83 QEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162 (363)
Q Consensus 83 ~~~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~ 162 (363)
.+ ...|||.||+..++...|.++|+.||.|..|++..+. .| ++|| ||+|++++.|.+||..
T Consensus 74 ---------------rd-~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~ 134 (369)
T KOG0123|consen 74 ---------------RD-PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEK 134 (369)
T ss_pred ---------------cC-CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHH
Confidence 01 1129999999999999999999999999999999985 45 8999 9999999999999999
Q ss_pred hCCceeCCEEEEEEeeccc
Q psy16184 163 ADGKKIDGRRVLVDVERSR 181 (363)
Q Consensus 163 l~g~~i~g~~i~V~~a~~~ 181 (363)
|||..+.|+.|.|.....+
T Consensus 135 ~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 135 LNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred hcCcccCCCeeEEeeccch
Confidence 9999999999999887654
No 42
>KOG0131|consensus
Probab=99.51 E-value=2.2e-14 Score=119.07 Aligned_cols=82 Identities=28% Similarity=0.416 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
.++..|||||||+..++++.|.++|-++|.|..+.|+.|+.|...+|||||+|.++++|+-||..||...|-|++|.|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ec
Q psy16184 178 ER 179 (363)
Q Consensus 178 a~ 179 (363)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 86
No 43
>KOG0148|consensus
Probab=99.50 E-value=5e-14 Score=123.69 Aligned_cols=82 Identities=20% Similarity=0.483 Sum_probs=78.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
..-|||+.|...++-+.|++.|.+||+|.+++|+.|..|++++|||||.|.+.++|+.||..|||..|+++.|...||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cC
Q psy16184 181 RT 182 (363)
Q Consensus 181 ~~ 182 (363)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 55
No 44
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.50 E-value=1.2e-13 Score=121.34 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=69.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
..+|||+||++.+|+++|++||+.||.|..|.|+.+. ...|||||+|.+++.|..||. |||..|.++.|.|..+..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 5799999999999999999999999999999999874 445899999999999999996 999999999999998653
No 45
>smart00362 RRM_2 RNA recognition motif.
Probab=99.50 E-value=1.8e-13 Score=98.82 Aligned_cols=72 Identities=35% Similarity=0.717 Sum_probs=67.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 103 ~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
+|||+|||..++.++|..+|..||.|..+.+..++ +.+.|+|||+|.+.+.|..|+..|++..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998775 7788999999999999999999999999999999873
No 46
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.49 E-value=1.2e-13 Score=137.85 Aligned_cols=79 Identities=27% Similarity=0.440 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CEEEEEEe
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKID-GRRVLVDV 177 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~i~V~~ 177 (363)
...++|||+|||+++++++|.++|.+||.|..|.|+.| .+|.++|||||+|.+.++|+.||..||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34689999999999999999999999999999999999 79999999999999999999999999999885 77776665
Q ss_pred e
Q psy16184 178 E 178 (363)
Q Consensus 178 a 178 (363)
+
T Consensus 135 S 135 (578)
T TIGR01648 135 S 135 (578)
T ss_pred c
Confidence 4
No 47
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.48 E-value=1.4e-13 Score=136.64 Aligned_cols=80 Identities=18% Similarity=0.405 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||. |+|..|.|+.|.|.++.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 46799999999999999999999999999999999999999999999999999999999998 89999999999999865
Q ss_pred c
Q psy16184 180 S 180 (363)
Q Consensus 180 ~ 180 (363)
.
T Consensus 167 ~ 167 (457)
T TIGR01622 167 A 167 (457)
T ss_pred h
Confidence 4
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.48 E-value=1.3e-14 Score=144.68 Aligned_cols=152 Identities=16% Similarity=0.229 Sum_probs=104.4
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCC--CC--CCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDP--KD--TPPPTRVETREERLERRRRERAEQVAYKLE 82 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (363)
.+|..+|+++|+|..+. ++ +++|| +||.|.+..... .. ...+..+.++.+.++.......
T Consensus 17 ~~L~~~f~~fG~V~~v~-i~------~~k~~-afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~-------- 80 (481)
T TIGR01649 17 ADLVEALIPFGPVSYVM-ML------PGKRQ-ALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEI-------- 80 (481)
T ss_pred HHHHHHHHhcCCeeEEE-EE------CCCCE-EEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccc--------
Confidence 46999999999999873 32 24678 899997754411 11 1245556665544433110000
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHH
Q psy16184 83 QEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162 (363)
Q Consensus 83 ~~~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~ 162 (363)
.................+|||+||++.+|+++|.++|+.||.|..|.|+.+. ..|+|||+|.+.++|.+|+..
T Consensus 81 ---~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~ 153 (481)
T TIGR01649 81 ---KRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAA 153 (481)
T ss_pred ---ccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHH
Confidence 0000000001111234579999999999999999999999999999997653 247999999999999999999
Q ss_pred hCCceeCC--EEEEEEeeccc
Q psy16184 163 ADGKKIDG--RRVLVDVERSR 181 (363)
Q Consensus 163 l~g~~i~g--~~i~V~~a~~~ 181 (363)
|||..|.| ..|.|+|++..
T Consensus 154 Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 154 LNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred hcCCcccCCceEEEEEEecCC
Confidence 99999965 58999998763
No 49
>KOG0109|consensus
Probab=99.47 E-value=9.9e-15 Score=129.26 Aligned_cols=133 Identities=22% Similarity=0.375 Sum_probs=104.3
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRERAEQVAYKLEQE 84 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363)
..|..||++++.|.-|..|.. | |||...+... ++..++..-.+.+..|.++.
T Consensus 17 ~elr~lFe~ygkVlECDIvKN---------Y-gFVHiEdktaaedairNLhgYtLhg~nInVea---------------- 70 (346)
T KOG0109|consen 17 QELRSLFEQYGKVLECDIVKN---------Y-GFVHIEDKTAAEDAIRNLHGYTLHGVNINVEA---------------- 70 (346)
T ss_pred HHHHHHHHhhCceEeeeeecc---------c-ceEEeecccccHHHHhhcccceecceEEEEEe----------------
Confidence 458899999999999976653 7 8887654333 22333444445554444432
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy16184 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 85 ~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
.......+++|+||||.+.++.++|+..|.+||.|.+|.|+.| |+||.|.-.++|..||..||
T Consensus 71 ---------SksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~ 133 (346)
T KOG0109|consen 71 ---------SKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLD 133 (346)
T ss_pred ---------ccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccc
Confidence 1112345789999999999999999999999999999999875 99999999999999999999
Q ss_pred CceeCCEEEEEEeecccC
Q psy16184 165 GKKIDGRRVLVDVERSRT 182 (363)
Q Consensus 165 g~~i~g~~i~V~~a~~~~ 182 (363)
+.+|.|+.++|+++..+.
T Consensus 134 ~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 134 NTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ccccccceeeeeeecccc
Confidence 999999999999987643
No 50
>KOG0117|consensus
Probab=99.47 E-value=1.5e-13 Score=128.26 Aligned_cols=83 Identities=24% Similarity=0.376 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee-CCEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI-DGRRVLV 175 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i-~g~~i~V 175 (363)
.....+-||||.||.++.|++|.-+|++.|+|-++.|+.|+.+|.++|||||+|.+.+.|+.||..||+++| .|+.|.|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 345578999999999999999999999999999999999999999999999999999999999999999988 5888777
Q ss_pred Eeec
Q psy16184 176 DVER 179 (363)
Q Consensus 176 ~~a~ 179 (363)
..+.
T Consensus 159 c~Sv 162 (506)
T KOG0117|consen 159 CVSV 162 (506)
T ss_pred EEee
Confidence 6543
No 51
>PF12220 U1snRNP70_N: U1 small nuclear ribonucleoprotein of 70kDa MW N terminal; InterPro: IPR022023 This domain is found in eukaryotes. This domain is about 90 amino acids in length. This domain is found associated with PF00076 from PFAM. This domain is part of U1 snRNP, which is the pre-mRNA binding protein of the penta-snRNP spliceosome complex. It extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition.
Probab=99.47 E-value=2e-13 Score=104.80 Aligned_cols=93 Identities=55% Similarity=0.972 Sum_probs=86.1
Q ss_pred CCCCCChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHH
Q psy16184 1 MTQFLPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKDTPPPTRVETREERLERRRRERAEQVAYK 80 (363)
Q Consensus 1 ~~~~~p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (363)
||.+|||+|+.||+|.|||.+++|+...|...+...|+||..|++.++....+.....++...+..++.+.++.++.+++
T Consensus 1 Mt~~lPp~ll~LF~PRPPL~y~pP~d~~p~~r~t~~itGvs~~l~~~~~~~~~~~~~~~et~~e~~~r~~~ek~~~~~~~ 80 (94)
T PF12220_consen 1 MTSKLPPNLLALFAPRPPLPYLPPIDYPPEKRKTPPITGVSQYLSEFEDYKDEPPPEPTETKEERRERKRKEKKEKNEEK 80 (94)
T ss_pred CcCcCCHHHHHHcCCCCCCCCCCccccCcccccCCCCCcHHHHHHHHhccccCCCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888777899999999999888877778889999999999999999999999
Q ss_pred HHHHHhhcCCCCC
Q psy16184 81 LEQEIALWDPNSF 93 (363)
Q Consensus 81 ~~~~~~~~~p~~~ 93 (363)
+++++..|+|..+
T Consensus 81 l~~~l~~w~P~~D 93 (94)
T PF12220_consen 81 LEEELKEWDPHED 93 (94)
T ss_pred HHHHHHhcCCCCC
Confidence 9999999999865
No 52
>smart00360 RRM RNA recognition motif.
Probab=99.45 E-value=4.1e-13 Score=96.55 Aligned_cols=71 Identities=37% Similarity=0.695 Sum_probs=67.1
Q ss_pred EcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 106 IARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 106 V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
|+|||..+++++|..+|..||.|..+.|..++.++.++|||||+|.+.++|..|+..|++..|.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999887789999999999999999999999999999999998873
No 53
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.43 E-value=5.3e-13 Score=122.09 Aligned_cols=79 Identities=37% Similarity=0.756 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
.++|||+|||+.+|+++|.++|..||.|..|.|+.++.++.++|||||+|.+.++|..|+..|++..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999999999999999965
No 54
>KOG0114|consensus
Probab=99.42 E-value=9.7e-13 Score=99.35 Aligned_cols=79 Identities=27% Similarity=0.455 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
..+..|||.|||+.+|.+++.++|.+||.|..|.|-. +...+|-|||.|++..+|.+|+..|+|..++++.|.|-+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3467899999999999999999999999999999965 4456799999999999999999999999999999999987
Q ss_pred cc
Q psy16184 179 RS 180 (363)
Q Consensus 179 ~~ 180 (363)
.+
T Consensus 93 q~ 94 (124)
T KOG0114|consen 93 QP 94 (124)
T ss_pred CH
Confidence 65
No 55
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=2e-12 Score=93.77 Aligned_cols=74 Identities=35% Similarity=0.681 Sum_probs=68.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 103 ~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
+|+|+|||+.+++++|.++|..||.|..+.+..++.+ .+.|+|||+|.+.++|..|+..+++..+.|..|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999887544 6789999999999999999999999999999999874
No 56
>KOG0108|consensus
Probab=99.40 E-value=5.6e-13 Score=128.36 Aligned_cols=81 Identities=28% Similarity=0.619 Sum_probs=78.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeeccc
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSR 181 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 181 (363)
+.|||||||+.+++++|..+|+..|.|..++++.|+.||+++|||||+|.+.+.|..|+..|||.++.|++|.|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred C
Q psy16184 182 T 182 (363)
Q Consensus 182 ~ 182 (363)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 57
>KOG0124|consensus
Probab=99.40 E-value=2.8e-13 Score=123.34 Aligned_cols=77 Identities=31% Similarity=0.672 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
.|.||||.|.+.+.++.|+..|..||.|+.|.+.+|+.|++++|||||+|+-++.|+-|++.|||..++|+.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999984
No 58
>KOG4676|consensus
Probab=99.39 E-value=5e-13 Score=122.74 Aligned_cols=79 Identities=9% Similarity=0.145 Sum_probs=65.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCC---CCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKV---TGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~---t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
..|.|.||.+++|.++|+.||..+|.|.++.|+.+.. .....-.|||.|.+...+..|.++.|.++|+-..|+|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 3899999999999999999999999999999876321 2334568999999999999999977777777777777765
Q ss_pred cc
Q psy16184 179 RS 180 (363)
Q Consensus 179 ~~ 180 (363)
..
T Consensus 88 ~~ 89 (479)
T KOG4676|consen 88 DE 89 (479)
T ss_pred CC
Confidence 54
No 59
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.37 E-value=2.3e-12 Score=128.45 Aligned_cols=78 Identities=23% Similarity=0.381 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 99 DPFKTLFIARVNY-DTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 99 ~~~~~l~V~nL~~-~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
.++++|||+||++ .+|+++|.++|+.||.|..|.|+.++ +|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 69999999999999999999998763 69999999999999999999999999999999999
Q ss_pred eccc
Q psy16184 178 ERSR 181 (363)
Q Consensus 178 a~~~ 181 (363)
++..
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8764
No 60
>KOG0123|consensus
Probab=99.33 E-value=1.2e-12 Score=125.07 Aligned_cols=167 Identities=22% Similarity=0.387 Sum_probs=116.9
Q ss_pred CChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHH--HHHHHHHH
Q psy16184 5 LPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRE--RAEQVAYK 80 (363)
Q Consensus 5 ~p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 80 (363)
-...|..+|+..++|..+. ++.+. +++++|| |||.|..... .+...+...........+.+.+.. ........
T Consensus 180 ~~~~l~~~f~~~g~i~s~~-v~~~~-~g~~~~~-gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~ 256 (369)
T KOG0123|consen 180 TDEELKDLFSAYGSITSVA-VMRDS-IGKSKGF-GFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRK 256 (369)
T ss_pred chHHHHHhhcccCcceEEE-EeecC-CCCCCCc-cceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhh
Confidence 3458999999999999984 44444 4569999 9999988443 222233333333222222221110 00000000
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHH
Q psy16184 81 LEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAY 160 (363)
Q Consensus 81 ~~~~~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai 160 (363)
..... .......+..+|||.||+..++.+.|..+|..||+|..+.|+.+ ..+.++||+||.|.+.++|..|+
T Consensus 257 ~~~~~-------~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~-~~g~skG~gfV~fs~~eeA~~A~ 328 (369)
T KOG0123|consen 257 FEQEF-------AKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVD-ENGKSKGFGFVEFSSPEEAKKAM 328 (369)
T ss_pred hHhhh-------hhccccccccccccccCccccchhHHHHHHhcccceeeEEEEec-cCCCccceEEEEcCCHHHHHHHH
Confidence 00000 11112234668999999999999999999999999999999888 57999999999999999999999
Q ss_pred HHhCCceeCCEEEEEEeecccC
Q psy16184 161 KHADGKKIDGRRVLVDVERSRT 182 (363)
Q Consensus 161 ~~l~g~~i~g~~i~V~~a~~~~ 182 (363)
..||+..|.++.|.|.++....
T Consensus 329 ~~~n~~~i~~k~l~vav~qr~~ 350 (369)
T KOG0123|consen 329 TEMNGRLIGGKPLYVAVAQRKE 350 (369)
T ss_pred HhhChhhhcCCchhhhHHhhhc
Confidence 9999999999999999987433
No 61
>smart00361 RRM_1 RNA recognition motif.
Probab=99.32 E-value=7.8e-12 Score=91.04 Aligned_cols=61 Identities=30% Similarity=0.558 Sum_probs=55.2
Q ss_pred HHHHHHHHH----hhCCccEEE-EeccCCC--CCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 115 ESKLRREFE----VYGPIKKIV-MVHNKVT--GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 115 ~~~L~~~F~----~~G~i~~v~-i~~d~~t--~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
+++|.++|. +||.|..|. |+.++.+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888998 999999995 6666656 899999999999999999999999999999999976
No 62
>KOG0110|consensus
Probab=99.31 E-value=1.6e-13 Score=134.73 Aligned_cols=163 Identities=15% Similarity=0.328 Sum_probs=118.6
Q ss_pred CCChhhhhcCCCCCCCCCC-CCCCCCCCC-CCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q psy16184 4 FLPPNLLALFAPRDPVPYL-PPVEKLPHE-KKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRERAEQVAY 79 (363)
Q Consensus 4 ~~p~~l~~~f~~~~pi~~~-~p~~~~p~t-~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (363)
+-+.+|..+|...+.|..+ .+...+|.. -.|.|| |||.|..... .+...+..+.+++..+.++.... +.
T Consensus 527 Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGf-gFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~-k~----- 599 (725)
T KOG0110|consen 527 TTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGF-GFVEFAKPESAQAALKALQGTVLDGHKLELKISEN-KP----- 599 (725)
T ss_pred cchhHHHHHHHhcCeEEEEEEeccccccccccccce-eEEEecCHHHHHHHHHHhcCceecCceEEEEeccC-cc-----
Confidence 3456788889998887775 233344432 358899 9999988654 22334556777776665553110 00
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHH
Q psy16184 80 KLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSA 159 (363)
Q Consensus 80 ~~~~~~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~A 159 (363)
....... .......++|+|.|||+.++-.+|+.+|..||.|..|.|+.-...+.++|||||+|-++.+|..|
T Consensus 600 -----~~~~gK~---~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA 671 (725)
T KOG0110|consen 600 -----ASTVGKK---KSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNA 671 (725)
T ss_pred -----ccccccc---cccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHH
Confidence 0000000 01112257899999999999999999999999999999987655677799999999999999999
Q ss_pred HHHhCCceeCCEEEEEEeeccc
Q psy16184 160 YKHADGKKIDGRRVLVDVERSR 181 (363)
Q Consensus 160 i~~l~g~~i~g~~i~V~~a~~~ 181 (363)
+.+|.++-|.|+.|+++||...
T Consensus 672 ~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 672 FDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred HHhhcccceechhhheehhccc
Confidence 9999999999999999999753
No 63
>KOG0146|consensus
Probab=99.31 E-value=1.4e-12 Score=114.34 Aligned_cols=86 Identities=17% Similarity=0.342 Sum_probs=81.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
..+..|+|||-.||....+.+|..+|-.||.|+..++..|+.|+.+++|+||.|.++.+|+.||.+|||..|+=+.|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccC
Q psy16184 177 VERSRT 182 (363)
Q Consensus 177 ~a~~~~ 182 (363)
+.+++.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 987754
No 64
>KOG0144|consensus
Probab=99.29 E-value=7.5e-12 Score=116.54 Aligned_cols=82 Identities=27% Similarity=0.510 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eCC--EEEEEE
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKK-IDG--RRVLVD 176 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~-i~g--~~i~V~ 176 (363)
..-+||||-||..++|.+|+.+|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+||+.. |-| .+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 34589999999999999999999999999999999999999999999999999999999999998864 444 578888
Q ss_pred eeccc
Q psy16184 177 VERSR 181 (363)
Q Consensus 177 ~a~~~ 181 (363)
+|...
T Consensus 113 ~Ad~E 117 (510)
T KOG0144|consen 113 YADGE 117 (510)
T ss_pred ccchh
Confidence 88653
No 65
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.29 E-value=1.6e-11 Score=85.24 Aligned_cols=56 Identities=32% Similarity=0.661 Sum_probs=50.9
Q ss_pred HHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 118 LRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 118 L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
|..+|++||.|..|.+.... .++|||+|.+.++|..|+..|||..|.|+.|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997653 589999999999999999999999999999999986
No 66
>KOG0109|consensus
Probab=99.29 E-value=4.4e-12 Score=112.63 Aligned_cols=72 Identities=28% Similarity=0.532 Sum_probs=68.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeeccc
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSR 181 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 181 (363)
.+|||||||..+++.+|+.+|++||+|.+|.|+++ ||||..++...|..||..|||..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 37999999999999999999999999999999875 9999999999999999999999999999999998876
No 67
>KOG4661|consensus
Probab=99.25 E-value=3.8e-11 Score=115.14 Aligned_cols=83 Identities=18% Similarity=0.355 Sum_probs=77.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
..+|||.+|...|...+|+.+|++||.|+-.+|+++..+.-.++|+||++.+.++|.+||..||-++|.|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 46899999999999999999999999999999999988888899999999999999999999999999999999999876
Q ss_pred cCC
Q psy16184 181 RTV 183 (363)
Q Consensus 181 ~~~ 183 (363)
.+.
T Consensus 485 Ep~ 487 (940)
T KOG4661|consen 485 EPG 487 (940)
T ss_pred Ccc
Confidence 543
No 68
>KOG4212|consensus
Probab=99.19 E-value=6.3e-11 Score=110.51 Aligned_cols=79 Identities=20% Similarity=0.469 Sum_probs=73.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHH-hhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 101 FKTLFIARVNYDTSESKLRREFE-VYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~-~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
.+.|||+|||+++.|.+|+++|. +.|+|+.|.|+.| .+|+++|||.|+|+++|.+++|++.||.+.+.|+.|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 45699999999999999999997 5799999999999 689999999999999999999999999999999999999765
Q ss_pred c
Q psy16184 180 S 180 (363)
Q Consensus 180 ~ 180 (363)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 69
>KOG4208|consensus
Probab=99.14 E-value=9.1e-11 Score=99.78 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhh-CCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVY-GPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~-G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
...+||..||..+.+.+|..+|.+| |.|..+.+..++.||.++|||||+|++.+.|..|.+.||+..|.++.|.|.+-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 4579999999999999999999998 788888888999999999999999999999999999999999999999999876
Q ss_pred cc
Q psy16184 180 SR 181 (363)
Q Consensus 180 ~~ 181 (363)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 54
No 70
>KOG4676|consensus
Probab=99.10 E-value=1.8e-11 Score=112.67 Aligned_cols=69 Identities=9% Similarity=0.079 Sum_probs=56.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
.+|+|++|+..+...++.++|..+|+|....+. .+...-+|.|+|....+...|+. ++|.++.-+...+
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ 220 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRR 220 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhh
Confidence 589999999999999999999999999988773 44456688899999999999998 5777776433333
No 71
>KOG4206|consensus
Probab=99.10 E-value=2.8e-10 Score=98.33 Aligned_cols=81 Identities=26% Similarity=0.437 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----HHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEE
Q psy16184 99 DPFKTLFIARVNYDTSESKLRR----EFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 174 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~----~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 174 (363)
.++.||||.||+..+..++|+. +|++||.|..|... .|.+.+|-|||.|.+.+.|-.|+..|+|..+-|+.+.
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4556999999999999988877 99999999998775 3788999999999999999999999999999999999
Q ss_pred EEeecccC
Q psy16184 175 VDVERSRT 182 (363)
Q Consensus 175 V~~a~~~~ 182 (363)
|.||+...
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99998754
No 72
>KOG0116|consensus
Probab=99.09 E-value=5.5e-10 Score=107.21 Aligned_cols=83 Identities=23% Similarity=0.387 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
..+|||.|||++++..+|+++|..||.|+...|..-...++..+||||+|.+...++.||.+ +-..|+++.|.|+..++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 34699999999999999999999999999888855332344459999999999999999996 68899999999998876
Q ss_pred cCCC
Q psy16184 181 RTVK 184 (363)
Q Consensus 181 ~~~~ 184 (363)
....
T Consensus 367 ~~~g 370 (419)
T KOG0116|consen 367 GFRG 370 (419)
T ss_pred cccc
Confidence 5443
No 73
>KOG4205|consensus
Probab=99.04 E-value=1.3e-10 Score=107.49 Aligned_cols=82 Identities=28% Similarity=0.548 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
..++||||+|+|.++++.|+.+|.+||+|.+|.|+.|+.++.++||+||+|.+.+.+..+|. ...+.|+|+.|.++.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 46799999999999999999999999999999999999999999999999999999999988 46688999999999887
Q ss_pred ccC
Q psy16184 180 SRT 182 (363)
Q Consensus 180 ~~~ 182 (363)
+..
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 643
No 74
>KOG0132|consensus
Probab=99.04 E-value=6.3e-10 Score=110.54 Aligned_cols=77 Identities=23% Similarity=0.466 Sum_probs=72.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
++|||||+|+..+++.+|..+|+.||+|..|.++. ++|||||.+....+|.+||.+|+.+.|.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 67999999999999999999999999999999876 469999999999999999999999999999999999987
Q ss_pred cCC
Q psy16184 181 RTV 183 (363)
Q Consensus 181 ~~~ 183 (363)
+..
T Consensus 495 ~G~ 497 (894)
T KOG0132|consen 495 KGP 497 (894)
T ss_pred CCc
Confidence 544
No 75
>KOG0153|consensus
Probab=98.96 E-value=1.6e-09 Score=98.80 Aligned_cols=75 Identities=27% Similarity=0.474 Sum_probs=67.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHH-hCCceeCCEEEEEEee
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH-ADGKKIDGRRVLVDVE 178 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~-l~g~~i~g~~i~V~~a 178 (363)
...+|||+||...+++.+|.++|.+||+|..|.++.. .++|||+|.+.++|+.|... +|...|+|..|.|.|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 3569999999999999999999999999999999764 47999999999999988765 5667899999999998
Q ss_pred cc
Q psy16184 179 RS 180 (363)
Q Consensus 179 ~~ 180 (363)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 76
>KOG0106|consensus
Probab=98.95 E-value=1.2e-09 Score=95.40 Aligned_cols=72 Identities=33% Similarity=0.655 Sum_probs=67.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeeccc
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSR 181 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 181 (363)
..||||+||+.+.+.+|+.||..||.|..|.|.. ||+||+|.+..+|..||..||+..|+|-.+.|+|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 3699999999999999999999999999998853 79999999999999999999999999999999998753
No 77
>KOG0110|consensus
Probab=98.93 E-value=2.2e-09 Score=106.02 Aligned_cols=78 Identities=23% Similarity=0.462 Sum_probs=69.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCC---CCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVT---GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t---~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
++|||.||++.+|.+.|..+|..+|.|..|.|...+.. -.+.|||||+|.+.++|+.|+..|+|+.|+|..|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 34999999999999999999999999999988654322 135699999999999999999999999999999999998
Q ss_pred c
Q psy16184 179 R 179 (363)
Q Consensus 179 ~ 179 (363)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 78
>KOG1548|consensus
Probab=98.93 E-value=3.8e-09 Score=96.30 Aligned_cols=85 Identities=16% Similarity=0.287 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCcc--------EEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIK--------KIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKID 169 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~--------~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 169 (363)
...++.|||.|||.++|.+++.++|++||-|. .|+|..+. .|+.+|-|+|.|...+++.-||..|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44566799999999999999999999999775 56777774 5999999999999999999999999999999
Q ss_pred CEEEEEEeecccCC
Q psy16184 170 GRRVLVDVERSRTV 183 (363)
Q Consensus 170 g~~i~V~~a~~~~~ 183 (363)
|+.|.|+.|+-...
T Consensus 210 g~~~rVerAkfq~K 223 (382)
T KOG1548|consen 210 GKKLRVERAKFQMK 223 (382)
T ss_pred CcEEEEehhhhhhc
Confidence 99999999875443
No 79
>KOG4209|consensus
Probab=98.91 E-value=2.5e-09 Score=95.57 Aligned_cols=83 Identities=25% Similarity=0.543 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
......|||+|+.+.+|.++|+.+|+.||.|..|.|+.++.+++++|||||+|.+.+.+..||. ||+..|.|..|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3456799999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred eccc
Q psy16184 178 ERSR 181 (363)
Q Consensus 178 a~~~ 181 (363)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8765
No 80
>KOG4212|consensus
Probab=98.89 E-value=3e-09 Score=99.48 Aligned_cols=75 Identities=21% Similarity=0.371 Sum_probs=68.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
...|+|||.|||+++||+.|++-|..||.|..+.|+. .|+.+| .|.|.++++|+.|+..|||..|+|+.|.|.|.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 4578999999999999999999999999999999954 577776 89999999999999999999999999999873
No 81
>KOG0226|consensus
Probab=98.87 E-value=2.8e-09 Score=93.32 Aligned_cols=78 Identities=22% Similarity=0.462 Sum_probs=73.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
...||.|.|...++.+.|-..|.+|-.....+++.++.||+++||+||.|.+..++..|+..|||..++.+.|.+--+
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 358999999999999999999999999999999999999999999999999999999999999999999999877644
No 82
>KOG0147|consensus
Probab=98.87 E-value=2.5e-09 Score=102.97 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=59.7
Q ss_pred CCCCeEEEcCCCC--CCC--------HHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy16184 99 DPFKTLFIARVNY--DTS--------ESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI 168 (363)
Q Consensus 99 ~~~~~l~V~nL~~--~~t--------~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 168 (363)
.++.++.+.|+=. ..| .++|.+...+||.|.+|.|..+ +-||.||.|.+.+.|..|+.+|||.+|
T Consensus 441 i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrWF 515 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRWF 515 (549)
T ss_pred CccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhhh
Confidence 4455677777521 111 2566677799999999888543 349999999999999999999999999
Q ss_pred CCEEEEEEeec
Q psy16184 169 DGRRVLVDVER 179 (363)
Q Consensus 169 ~g~~i~V~~a~ 179 (363)
.|+.|.+.|-.
T Consensus 516 ~gr~Ita~~~~ 526 (549)
T KOG0147|consen 516 AGRMITAKYLP 526 (549)
T ss_pred ccceeEEEEee
Confidence 99999999864
No 83
>KOG0533|consensus
Probab=98.86 E-value=1e-08 Score=91.44 Aligned_cols=81 Identities=20% Similarity=0.443 Sum_probs=74.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
..+|+|.||++.|++++|+++|..||.+..+.|..++ +|.+.|.|-|.|...++|..|++.|||+.|+|..|.+.....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 4689999999999999999999999999999888884 899999999999999999999999999999999999998765
Q ss_pred cC
Q psy16184 181 RT 182 (363)
Q Consensus 181 ~~ 182 (363)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 43
No 84
>KOG0106|consensus
Probab=98.86 E-value=1.2e-09 Score=95.33 Aligned_cols=141 Identities=20% Similarity=0.329 Sum_probs=91.8
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRERAEQVAYKLEQE 84 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363)
-+|..||..+|-|..+. +. .|| +||.|.+.-. ++.-.+....+.+..+.++..+...-.+
T Consensus 16 ~d~E~~f~~yg~~~d~~-mk--------~gf-~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~-------- 77 (216)
T KOG0106|consen 16 RDVERFFKGYGKIPDAD-MK--------NGF-GFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGR-------- 77 (216)
T ss_pred hHHHHHHhhccccccce-ee--------ccc-ceeccCchhhhhcccchhcCceecceeeeeeccccccccc--------
Confidence 46889999999999883 22 356 5666654322 3333333444433332222211100000
Q ss_pred HhhcCCCC----CCCCC---CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHH
Q psy16184 85 IALWDPNS----FPNAT---MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMH 157 (363)
Q Consensus 85 ~~~~~p~~----~~~~~---~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~ 157 (363)
...+.. +.... ....+.|+|.||+..+.+.+|..+|.++|.+....+ ..+++||+|.+.++|.
T Consensus 78 --g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ 147 (216)
T KOG0106|consen 78 --GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAK 147 (216)
T ss_pred --CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhh
Confidence 001111 11111 223567899999999999999999999999955444 2479999999999999
Q ss_pred HHHHHhCCceeCCEEEEE
Q psy16184 158 SAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 158 ~Ai~~l~g~~i~g~~i~V 175 (363)
.||..|++..|.++.|.|
T Consensus 148 ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 148 RALEKLDGKKLNGRRISV 165 (216)
T ss_pred hcchhccchhhcCceeee
Confidence 999999999999999999
No 85
>KOG0146|consensus
Probab=98.78 E-value=1.3e-08 Score=89.63 Aligned_cols=80 Identities=21% Similarity=0.472 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee-C--CEEEEEE
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI-D--GRRVLVD 176 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i-~--g~~i~V~ 176 (363)
..++||||-|...-.|++++.+|..||.|.+|.+...+ .|.++|||||.|.+.-+|+.||..|||... - ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 46799999999999999999999999999999998774 788999999999999999999999999653 3 3478999
Q ss_pred eecc
Q psy16184 177 VERS 180 (363)
Q Consensus 177 ~a~~ 180 (363)
++..
T Consensus 97 ~ADT 100 (371)
T KOG0146|consen 97 FADT 100 (371)
T ss_pred eccc
Confidence 9865
No 86
>KOG1457|consensus
Probab=98.77 E-value=6.1e-08 Score=83.48 Aligned_cols=84 Identities=17% Similarity=0.284 Sum_probs=68.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEe-ccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC---CEEEEE
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMV-HNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKID---GRRVLV 175 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~-~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~---g~~i~V 175 (363)
..+||||.+||.++...+|..+|..|--.+.+.|. .++...-.+-+|||+|.+...|.+|+.+|||+.|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 36799999999999999999999998655555553 33322334579999999999999999999999985 789999
Q ss_pred EeecccCC
Q psy16184 176 DVERSRTV 183 (363)
Q Consensus 176 ~~a~~~~~ 183 (363)
++|+..+.
T Consensus 113 ElAKSNtK 120 (284)
T KOG1457|consen 113 ELAKSNTK 120 (284)
T ss_pred eehhcCcc
Confidence 99987543
No 87
>KOG4454|consensus
Probab=98.75 E-value=3.2e-09 Score=90.97 Aligned_cols=78 Identities=17% Similarity=0.291 Sum_probs=70.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
..||||+||...++++-|.++|-+.|.|..|.|+.++ .+..+ ||||.|.++.++.-|++.|||..+.+..|.|.+-.+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 4699999999999999999999999999999998774 56666 999999999999999999999999999999987554
No 88
>KOG0151|consensus
Probab=98.68 E-value=4.4e-08 Score=96.75 Aligned_cols=84 Identities=17% Similarity=0.325 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCC---CCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEE
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVT---GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 174 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t---~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 174 (363)
.+.+++|||+||++.++++.|...|..||+|..|+|+..... ....-||||.|-+..+|+.|+..|+|..|.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 345678999999999999999999999999999999876422 33466999999999999999999999999999999
Q ss_pred EEeeccc
Q psy16184 175 VDVERSR 181 (363)
Q Consensus 175 V~~a~~~ 181 (363)
+-|+++.
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998653
No 89
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.66 E-value=2.2e-07 Score=71.26 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=70.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhh--CCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC----CEEEEE
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVY--GPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKID----GRRVLV 175 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~--G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~----g~~i~V 175 (363)
+||.|.|||...|.++|.+++... |....+.++.|..++-+.|||||.|.+++.|..-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988754 77888899999999999999999999999999999999998774 667888
Q ss_pred Eeecc
Q psy16184 176 DVERS 180 (363)
Q Consensus 176 ~~a~~ 180 (363)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88854
No 90
>KOG1995|consensus
Probab=98.61 E-value=1.1e-07 Score=87.61 Aligned_cols=86 Identities=28% Similarity=0.344 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCcc--------EEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIK--------KIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKID 169 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~--------~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 169 (363)
.....+|||-+|+..+++.+|.++|.+||.|. .|+|.+++.|+.++|-|.|+|.+...|++||.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34566999999999999999999999999875 5678889999999999999999999999999999999999
Q ss_pred CEEEEEEeecccCC
Q psy16184 170 GRRVLVDVERSRTV 183 (363)
Q Consensus 170 g~~i~V~~a~~~~~ 183 (363)
|..|+|.+|..++.
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999876653
No 91
>KOG4660|consensus
Probab=98.61 E-value=3.9e-08 Score=95.07 Aligned_cols=77 Identities=30% Similarity=0.436 Sum_probs=68.2
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEE
Q psy16184 93 FPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 172 (363)
Q Consensus 93 ~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 172 (363)
++.....+..+|+|-|||..|++++|..+|+.||+|..|.. |-...|.+||+|.+..+|+.|+.+||+..|.|+.
T Consensus 67 np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 67 NPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 44444556789999999999999999999999999999766 4446799999999999999999999999999999
Q ss_pred EE
Q psy16184 173 VL 174 (363)
Q Consensus 173 i~ 174 (363)
|.
T Consensus 142 ~k 143 (549)
T KOG4660|consen 142 IK 143 (549)
T ss_pred hc
Confidence 88
No 92
>KOG0120|consensus
Probab=98.57 E-value=6.1e-08 Score=94.45 Aligned_cols=82 Identities=21% Similarity=0.465 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
...+.|||+|||..+++.++.+++..||.+....++.+..+|.++||||.+|.+......|+..|||..+.++.|+|..|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc
Q psy16184 179 RS 180 (363)
Q Consensus 179 ~~ 180 (363)
-.
T Consensus 367 ~~ 368 (500)
T KOG0120|consen 367 IV 368 (500)
T ss_pred hc
Confidence 65
No 93
>KOG4206|consensus
Probab=98.48 E-value=8.7e-08 Score=83.05 Aligned_cols=162 Identities=17% Similarity=0.241 Sum_probs=104.0
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHHHHHHHH-------
Q psy16184 8 NLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRERAEQVA------- 78 (363)
Q Consensus 8 ~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 78 (363)
.|..||+++|.|..+-+. .|.+.+|- .||.|.+... .+..++.+-.+-++..+++.++....--.+
T Consensus 29 sL~~LFsqfG~ildI~a~----kt~KmRGQ-A~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~ 103 (221)
T KOG4206|consen 29 SLYLLFSQFGKILDISAF----KTPKMRGQ-AFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVE 103 (221)
T ss_pred HHHHHHHhhCCeEEEEec----CCCCccCc-eEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceecc
Confidence 478899999976654222 25677787 5666655222 223345555555555555443221100000
Q ss_pred -------HHHH-------HHHh------hcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCC
Q psy16184 79 -------YKLE-------QEIA------LWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKV 138 (363)
Q Consensus 79 -------~~~~-------~~~~------~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~ 138 (363)
+... .... ...|..-+.....+..+||+.|||..++.+.|..+|.+|.-...|.++...
T Consensus 104 ~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~- 182 (221)
T KOG4206|consen 104 KEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR- 182 (221)
T ss_pred ccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-
Confidence 0000 0000 000000012235677899999999999999999999999999999887653
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhCCceeC-CEEEEEEeec
Q psy16184 139 TGKPRGYAFIEYEHERDMHSAYKHADGKKID-GRRVLVDVER 179 (363)
Q Consensus 139 t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~i~V~~a~ 179 (363)
.+.|||+|.+...|..|..+|.+..|- ...+.|.++.
T Consensus 183 ----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 183 ----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred ----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 589999999999999999999998886 7778887764
No 94
>KOG4210|consensus
Probab=98.44 E-value=9e-08 Score=88.42 Aligned_cols=84 Identities=18% Similarity=0.493 Sum_probs=76.4
Q ss_pred CCCCeEE-EcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 99 DPFKTLF-IARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 99 ~~~~~l~-V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
.+..++| |+||+..++.++|..+|..+|.|..+.++.++.++.++|||||.|.+...+..|+.. +...|.+..|.|..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3455666 999999999999999999999999999999999999999999999999999999986 88999999999999
Q ss_pred ecccCC
Q psy16184 178 ERSRTV 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
..+...
T Consensus 261 ~~~~~~ 266 (285)
T KOG4210|consen 261 DEPRPK 266 (285)
T ss_pred CCCCcc
Confidence 877544
No 95
>KOG4211|consensus
Probab=98.31 E-value=2.1e-06 Score=82.12 Aligned_cols=78 Identities=21% Similarity=0.358 Sum_probs=67.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
...|-+.+|||++|+++|.+||+.|+ |..+.+++ .+|++.|-|||+|.+++++++||+ .+-..+..+.|.|-.+..
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 45688899999999999999999995 77766655 589999999999999999999999 588888899999988765
Q ss_pred cC
Q psy16184 181 RT 182 (363)
Q Consensus 181 ~~ 182 (363)
..
T Consensus 86 ~e 87 (510)
T KOG4211|consen 86 AE 87 (510)
T ss_pred cc
Confidence 44
No 96
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.26 E-value=6.2e-06 Score=75.27 Aligned_cols=93 Identities=19% Similarity=0.342 Sum_probs=70.1
Q ss_pred cCCCCCCCCCCCCCCeEEEcCCCCCCCHHH----H--HHHHHhhCCccEEEEeccCCC-CCcce--EEEEEecCHHHHHH
Q psy16184 88 WDPNSFPNATMDPFKTLFIARVNYDTSESK----L--RREFEVYGPIKKIVMVHNKVT-GKPRG--YAFIEYEHERDMHS 158 (363)
Q Consensus 88 ~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~----L--~~~F~~~G~i~~v~i~~d~~t-~~~~g--~afV~f~~~~~a~~ 158 (363)
.+-....+....+.+-|||-+|++.+..++ | .++|.+||.|..|.|-..... ....+ -.||+|.+.++|..
T Consensus 101 ~nrkhlsniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAar 180 (480)
T COG5175 101 QNRKHLSNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAAR 180 (480)
T ss_pred ccccccccceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHH
Confidence 333445556666778899999998886655 3 579999999998877432101 11122 34999999999999
Q ss_pred HHHHhCCceeCCEEEEEEeecc
Q psy16184 159 AYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 159 Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
||..++|..++|+.|+..|...
T Consensus 181 cIa~vDgs~~DGr~lkatYGTT 202 (480)
T COG5175 181 CIAEVDGSLLDGRVLKATYGTT 202 (480)
T ss_pred HHHHhccccccCceEeeecCch
Confidence 9999999999999999998654
No 97
>KOG4849|consensus
Probab=98.26 E-value=1.9e-06 Score=78.92 Aligned_cols=75 Identities=16% Similarity=0.357 Sum_probs=67.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhC--CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYG--PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G--~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
.++|||||-|++|.++|.+.+...| .|.++++..+..+|+++|||+|...+...+++.++.|....|.|+.-.|-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 4799999999999999999998777 57778888899999999999999999999999999999999999865554
No 98
>KOG0120|consensus
Probab=98.23 E-value=6.3e-07 Score=87.47 Aligned_cols=170 Identities=14% Similarity=0.217 Sum_probs=96.2
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHHHHH-HHHHHHHHH
Q psy16184 8 NLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRERAE-QVAYKLEQE 84 (363)
Q Consensus 8 ~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 84 (363)
.+..+...++||..+. +..+..++.++|| .|..|++..- .+.+.+....+....+.++.+-..+.. .....+.+.
T Consensus 305 q~~Ell~~fg~lk~f~-lv~d~~~g~skg~-af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~ 382 (500)
T KOG0120|consen 305 QVKELLDSFGPLKAFR-LVKDSATGNSKGF-AFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQS 382 (500)
T ss_pred HHHHHHHhcccchhhe-eecccccccccce-eeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCcccc
Confidence 4566677778888774 4457778999999 5555555333 244445554444333222221100000 000000000
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEcCCC--CCC-CH-------HHHHHHHHhhCCccEEEEeccC---CCCCcceEEEEEec
Q psy16184 85 IALWDPNSFPNATMDPFKTLFIARVN--YDT-SE-------SKLRREFEVYGPIKKIVMVHNK---VTGKPRGYAFIEYE 151 (363)
Q Consensus 85 ~~~~~p~~~~~~~~~~~~~l~V~nL~--~~~-t~-------~~L~~~F~~~G~i~~v~i~~d~---~t~~~~g~afV~f~ 151 (363)
....-+.........++..|.+.|+- ..+ .+ ++|+.-+.+||.|..|.|+.+- ...-..|..||+|.
T Consensus 383 ~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefa 462 (500)
T KOG0120|consen 383 QVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFA 462 (500)
T ss_pred ccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEec
Confidence 00000000112233445556555542 111 22 2344456789999999997762 22335688999999
Q ss_pred CHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 152 HERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 152 ~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
+.++++.|+++|+|..|+|+.|...|..
T Consensus 463 s~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 463 DTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred ChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 9999999999999999999999998864
No 99
>KOG1190|consensus
Probab=98.22 E-value=4.4e-06 Score=78.10 Aligned_cols=77 Identities=22% Similarity=0.434 Sum_probs=69.3
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 101 FKTLFIARVNY-DTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 101 ~~~l~V~nL~~-~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
++.|.|.||.. .+|.+.|..+|..||.|..|+|..++ +--|+|+|.+...|+-|+++|+|+.|.|+.|.|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57899999975 58999999999999999999998864 3579999999999999999999999999999999987
Q ss_pred ccC
Q psy16184 180 SRT 182 (363)
Q Consensus 180 ~~~ 182 (363)
-..
T Consensus 372 H~~ 374 (492)
T KOG1190|consen 372 HTN 374 (492)
T ss_pred Ccc
Confidence 543
No 100
>KOG1548|consensus
Probab=98.22 E-value=1.5e-05 Score=73.13 Aligned_cols=99 Identities=18% Similarity=0.434 Sum_probs=75.5
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCeEEEcCCC----CCCC-------HHHHHHHHHhhCCccEEEEeccCCCCCcceEEE
Q psy16184 79 YKLEQEIALWDPNSFPNATMDPFKTLFIARVN----YDTS-------ESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAF 147 (363)
Q Consensus 79 ~~~~~~~~~~~p~~~~~~~~~~~~~l~V~nL~----~~~t-------~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~af 147 (363)
+++++.+-.|.|...........++|.|.||= +..+ .++|.+-..+||.|..|.|. ..++.|.+-
T Consensus 243 ~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~----d~hPdGvvt 318 (382)
T KOG1548|consen 243 KKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY----DRHPDGVVT 318 (382)
T ss_pred HHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe----ccCCCceeE
Confidence 34445555667766444445567899999973 2233 34566668899999999884 245789999
Q ss_pred EEecCHHHHHHHHHHhCCceeCCEEEEEEeeccc
Q psy16184 148 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERSR 181 (363)
Q Consensus 148 V~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 181 (363)
|.|.+.+.|..||+.|+|..|+|++|...+....
T Consensus 319 V~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 319 VSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred EEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 9999999999999999999999999999987543
No 101
>KOG2416|consensus
Probab=98.20 E-value=1.8e-06 Score=84.10 Aligned_cols=78 Identities=13% Similarity=0.261 Sum_probs=66.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHH-hhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee---CCEEE
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFE-VYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI---DGRRV 173 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~-~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i---~g~~i 173 (363)
..+++.|||.||-.-+|.-+|+.++. .+|.|..++| |+ .+..|||.|.+.++|.+.+.+|||+.+ +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 34578999999999999999999999 5677777743 32 467999999999999999999999875 78899
Q ss_pred EEEeeccc
Q psy16184 174 LVDVERSR 181 (363)
Q Consensus 174 ~V~~a~~~ 181 (363)
.|.|....
T Consensus 515 ~adf~~~d 522 (718)
T KOG2416|consen 515 IADFVRAD 522 (718)
T ss_pred Eeeecchh
Confidence 99998653
No 102
>KOG1457|consensus
Probab=98.18 E-value=1.8e-06 Score=74.60 Aligned_cols=65 Identities=22% Similarity=0.330 Sum_probs=54.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI 168 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 168 (363)
.+.||||.||..+||+++|+.+|+.|--..-++|.. .. ...+|||+|++.+.|..|+..|.|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~--~~--g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA--RG--GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec--CC--CcceEeecHHHHHHHHHHHHHhhccee
Confidence 356899999999999999999999997666666632 12 235899999999999999999988766
No 103
>KOG2202|consensus
Probab=98.09 E-value=1e-05 Score=71.51 Aligned_cols=64 Identities=19% Similarity=0.418 Sum_probs=53.5
Q ss_pred HHHHHHH-hhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeeccc
Q psy16184 117 KLRREFE-VYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSR 181 (363)
Q Consensus 117 ~L~~~F~-~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 181 (363)
+|...|. +||+|..+.|..+ ..-+..|-+||.|...++|++|+..||+..|.|++|..++....
T Consensus 84 d~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 4444445 8999999977544 45667899999999999999999999999999999999987654
No 104
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.04 E-value=1.2e-05 Score=58.94 Aligned_cols=68 Identities=18% Similarity=0.346 Sum_probs=47.3
Q ss_pred CeEEEcCCCCCCCHHH----HHHHHHhhC-CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 102 KTLFIARVNYDTSESK----LRREFEVYG-PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~----L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
..|||.|||.+..... |+.++..|| .|..|. .+.|+|.|.+.+.|..|+..|+|..+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3699999999988765 456666776 565541 2689999999999999999999999999999999
Q ss_pred eec
Q psy16184 177 VER 179 (363)
Q Consensus 177 ~a~ 179 (363)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 974
No 105
>KOG4211|consensus
Probab=97.91 E-value=3.5e-05 Score=73.93 Aligned_cols=79 Identities=16% Similarity=0.261 Sum_probs=65.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccE-EEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKK-IVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~-v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
+...|-+.+||+.||+++|.+||+..-.|.. |.++.+ ..+.+.|-|||.|++.+.|++||.. |...|..+-|.|-.+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4568999999999999999999997655544 445555 4677999999999999999999995 778899999999876
Q ss_pred cc
Q psy16184 179 RS 180 (363)
Q Consensus 179 ~~ 180 (363)
.-
T Consensus 180 s~ 181 (510)
T KOG4211|consen 180 SR 181 (510)
T ss_pred HH
Confidence 43
No 106
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.90 E-value=1.4e-05 Score=62.73 Aligned_cols=70 Identities=16% Similarity=0.330 Sum_probs=44.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCc-----eeCCEEEEEE
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGK-----KIDGRRVLVD 176 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~-----~i~g~~i~V~ 176 (363)
+.|+|.|++..++.++|+++|..||.|..|.+... -.-|||-|.+.+.|+.|+..+... .|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57899999999999999999999999999988553 248999999999999999876433 5566555555
Q ss_pred e
Q psy16184 177 V 177 (363)
Q Consensus 177 ~ 177 (363)
+
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 107
>KOG0129|consensus
Probab=97.86 E-value=4.7e-05 Score=73.51 Aligned_cols=69 Identities=16% Similarity=0.308 Sum_probs=63.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHH-hhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHH
Q psy16184 94 PNATMDPFKTLFIARVNYDTSESKLRREFE-VYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162 (363)
Q Consensus 94 ~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~-~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~ 162 (363)
.+...++.+|||||+||--+|.++|..+|. -||.|..|-|-+|+.-+-++|-|-|+|.+..+..+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 455667899999999999999999999999 799999999999988889999999999999999999985
No 108
>KOG0128|consensus
Probab=97.84 E-value=7.4e-06 Score=83.10 Aligned_cols=135 Identities=19% Similarity=0.234 Sum_probs=101.8
Q ss_pred CChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 5 LPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKDTPPPTRVETREERLERRRRERAEQVAYKLEQE 84 (363)
Q Consensus 5 ~p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363)
+-++|...|.+.+.+.++- +.-.-.+++.+|+ +++.|+......+. |...-...
T Consensus 680 ~~~dl~~~~~~~~~~e~vq-i~~h~n~~~~rG~-~Y~~F~~~~~~~aa------V~f~d~~~------------------ 733 (881)
T KOG0128|consen 680 SEEDLSERFSPSGTIEVVQ-IVIHKNEKRFRGK-AYVEFLKPEHAGAA------VAFRDSCF------------------ 733 (881)
T ss_pred cCchhhhhcCccchhhhHH-HHHHhhccccccc-eeeEeecCCchhhh------hhhhhhhh------------------
Confidence 4578888888888888773 3334456888899 77777654321110 00000000
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy16184 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 85 ~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
-....|||.|+|+..|.+.|+.+|..+|.++.+.++.. ..|+++|.|||.|.++.+|..++..+.
T Consensus 734 --------------~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d 798 (881)
T KOG0128|consen 734 --------------FGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVD 798 (881)
T ss_pred --------------hhhhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccch
Confidence 00237999999999999999999999999999988776 479999999999999999999999888
Q ss_pred CceeCCEEEEEEeecc
Q psy16184 165 GKKIDGRRVLVDVERS 180 (363)
Q Consensus 165 g~~i~g~~i~V~~a~~ 180 (363)
...+.-..+.|..+.+
T Consensus 799 ~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 799 VAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhhcCccccccCC
Confidence 8888888888888665
No 109
>KOG1365|consensus
Probab=97.76 E-value=5.1e-05 Score=70.55 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=68.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCC-ccE--EEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGP-IKK--IVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~-i~~--v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+|-+.+||+.++.++|..||..|.. |.. |+|+.+ ..|.+.|-|||+|.+.+.|.+|....+.+....+.|.|-.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 458999999999999999999999863 443 778777 5799999999999999999999999888888899998887
Q ss_pred ecc
Q psy16184 178 ERS 180 (363)
Q Consensus 178 a~~ 180 (363)
+..
T Consensus 359 ~S~ 361 (508)
T KOG1365|consen 359 CSV 361 (508)
T ss_pred ccH
Confidence 653
No 110
>KOG0112|consensus
Probab=97.70 E-value=5.4e-05 Score=77.40 Aligned_cols=78 Identities=32% Similarity=0.532 Sum_probs=67.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--EEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDG--RRVL 174 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g--~~i~ 174 (363)
...+++.|||++|..++....|...|..||.|..|.+-. | .-||||.|++...|+.|++.|-|..|+| +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 345678999999999999999999999999999887732 2 3599999999999999999999999976 5689
Q ss_pred EEeecc
Q psy16184 175 VDVERS 180 (363)
Q Consensus 175 V~~a~~ 180 (363)
|.++..
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 998865
No 111
>KOG2314|consensus
Probab=97.63 E-value=0.00015 Score=70.60 Aligned_cols=76 Identities=24% Similarity=0.406 Sum_probs=61.2
Q ss_pred CCeEEEcCCCCCCC------HHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CEEE
Q psy16184 101 FKTLFIARVNYDTS------ESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKID-GRRV 173 (363)
Q Consensus 101 ~~~l~V~nL~~~~t------~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~i 173 (363)
...|+|.|+|.--. ..-|..+|+++|+|..+.++.+..+| .+||.|++|.+..+|+.|+..|||+.|+ ...+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 45789999985322 23456789999999999999886555 9999999999999999999999999885 4455
Q ss_pred EEEe
Q psy16184 174 LVDV 177 (363)
Q Consensus 174 ~V~~ 177 (363)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 5554
No 112
>KOG3152|consensus
Probab=97.63 E-value=3.9e-05 Score=67.79 Aligned_cols=72 Identities=13% Similarity=0.284 Sum_probs=61.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCC--------CCcce----EEEEEecCHHHHHHHHHHhCCcee
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVT--------GKPRG----YAFIEYEHERDMHSAYKHADGKKI 168 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t--------~~~~g----~afV~f~~~~~a~~Ai~~l~g~~i 168 (363)
+-.||++|||+.+....|+++|..||.|-.|.|.....+ |.+.. -|.|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 458999999999999999999999999999998654433 33332 267999999999999999999999
Q ss_pred CCEE
Q psy16184 169 DGRR 172 (363)
Q Consensus 169 ~g~~ 172 (363)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9875
No 113
>KOG0105|consensus
Probab=97.62 E-value=0.00057 Score=57.67 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=56.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKID 169 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 169 (363)
..|.|.+||+..+|++|++++...|.|....+..| |++.|+|...++++-||..|....+.
T Consensus 116 ~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 47999999999999999999999999999999887 69999999999999999999887654
No 114
>KOG1855|consensus
Probab=97.52 E-value=8.2e-05 Score=70.24 Aligned_cols=70 Identities=23% Similarity=0.311 Sum_probs=57.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEecc---CCC--CC--------cceEEEEEecCHHHHHHHHHHhC
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHN---KVT--GK--------PRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d---~~t--~~--------~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
.-+.++|.+.|||.+-.-+.|.++|..||.|..|.|+.. +.+ +. .+-+|||+|...+.|.+|.+.||
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 347899999999999888999999999999999999654 222 21 24589999999999999999886
Q ss_pred Cce
Q psy16184 165 GKK 167 (363)
Q Consensus 165 g~~ 167 (363)
...
T Consensus 308 ~e~ 310 (484)
T KOG1855|consen 308 PEQ 310 (484)
T ss_pred hhh
Confidence 543
No 115
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.49 E-value=0.00025 Score=48.21 Aligned_cols=52 Identities=17% Similarity=0.390 Sum_probs=42.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHH
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAY 160 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai 160 (363)
+.|-|.+.+....+ .|..+|..||+|..+.+.. ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 46889999987664 4555999999999988852 2359999999999999985
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.41 E-value=0.00081 Score=55.17 Aligned_cols=74 Identities=16% Similarity=0.350 Sum_probs=53.1
Q ss_pred CCCCCeEEEcCCC-----C-CCCH---HHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy16184 98 MDPFKTLFIARVN-----Y-DTSE---SKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI 168 (363)
Q Consensus 98 ~~~~~~l~V~nL~-----~-~~t~---~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 168 (363)
++|..||.|.=+. . ...+ .+|.+.|..||+|.-|+++.+ .-+|+|.+-.+|.+|+. |+|..|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 3445577776554 1 1222 367788899999998888653 67899999999999999 899999
Q ss_pred CCEEEEEEeecc
Q psy16184 169 DGRRVLVDVERS 180 (363)
Q Consensus 169 ~g~~i~V~~a~~ 180 (363)
+|+.|.|.+..+
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999998654
No 117
>KOG1190|consensus
Probab=97.39 E-value=0.00035 Score=65.71 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=65.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCE-EEEEE
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR-RVLVD 176 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~-~i~V~ 176 (363)
-+|+.+|.+.|||..+++++|+.+|..-|-........ ++.+-+|++.+.+.+.|..|+..|+.+.+++. .|.|.
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 35677999999999999999999999988664443322 33456999999999999999999999998766 89999
Q ss_pred eecc
Q psy16184 177 VERS 180 (363)
Q Consensus 177 ~a~~ 180 (363)
|++.
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 9864
No 118
>KOG4307|consensus
Probab=97.36 E-value=0.00068 Score=67.74 Aligned_cols=75 Identities=21% Similarity=0.378 Sum_probs=64.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 103 ~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
.|-|.|+|+.++-++|.+||.-|-.+-.-.++.-...|.+.|-|.|.|++.++|..|...|++..|..++|.|.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 788899999999999999999997654333333336799999999999999999999999999999999998864
No 119
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.32 E-value=0.0011 Score=51.35 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=51.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccC-------CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCE-E
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNK-------VTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR-R 172 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~-------~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~-~ 172 (363)
.+-|.|-+.|+. ....|..+|++||.|.+..-+... .......+..|+|.+..+|.+||. -||..|.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 346888899987 557788899999999876411000 001123588999999999999999 599999885 5
Q ss_pred EEEEeec
Q psy16184 173 VLVDVER 179 (363)
Q Consensus 173 i~V~~a~ 179 (363)
|-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5677764
No 120
>KOG1456|consensus
Probab=97.32 E-value=0.0013 Score=61.28 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 97 TMDPFKTLFIARVNYD-TSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~-~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
...+.+.+.|-+|... ++-+.|..+|-.||.|..|+++.-+ .|-|.|++.+...++.|+..||+..+-|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3446788999999865 5778999999999999999998764 489999999999999999999999999999999
Q ss_pred EeecccC
Q psy16184 176 DVERSRT 182 (363)
Q Consensus 176 ~~a~~~~ 182 (363)
.+++...
T Consensus 358 ~~SkQ~~ 364 (494)
T KOG1456|consen 358 CVSKQNF 364 (494)
T ss_pred eeccccc
Confidence 9987643
No 121
>KOG0129|consensus
Probab=97.27 E-value=0.00043 Score=67.07 Aligned_cols=63 Identities=22% Similarity=0.538 Sum_probs=49.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccC---CCCCcce---EEEEEecCHHHHHHHHHHhC
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNK---VTGKPRG---YAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~---~t~~~~g---~afV~f~~~~~a~~Ai~~l~ 164 (363)
+++||||+||+.++|+.|...|..||.+. |.++... .--.++| |+|+.|+++.++...|.++.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 67999999999999999999999999764 4444211 1122456 99999999999988777653
No 122
>KOG1456|consensus
Probab=97.19 E-value=0.0013 Score=61.23 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=62.2
Q ss_pred CCCeEEEc--CCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-C-EEEEE
Q psy16184 100 PFKTLFIA--RVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKID-G-RRVLV 175 (363)
Q Consensus 100 ~~~~l~V~--nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g-~~i~V 175 (363)
++..|.++ |--+.+|.+-|..+....|.|..|.|... +| --|.|+|++.+.|++|.++|||..|- | ..|+|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 44555555 44467899999999999999999988653 22 36999999999999999999999774 3 47899
Q ss_pred Eeeccc
Q psy16184 176 DVERSR 181 (363)
Q Consensus 176 ~~a~~~ 181 (363)
+||++.
T Consensus 194 eyAkP~ 199 (494)
T KOG1456|consen 194 EYAKPT 199 (494)
T ss_pred EecCcc
Confidence 999874
No 123
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.13 E-value=4.5e-05 Score=69.28 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=94.6
Q ss_pred CChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHH--HHHHHHHHH
Q psy16184 5 LPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRR--ERAEQVAYK 80 (363)
Q Consensus 5 ~p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 80 (363)
-..+|..+|..++++..+ .+..+..++.++|| +||.|..... .+...+....+.++.+.+..... .........
T Consensus 128 ~~~~l~~~F~~~g~~~~~-~~~~d~~~~~~~g~-~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 205 (306)
T COG0724 128 TEEDLRELFKKFGPVKRV-RLVRDRETGKSRGF-AFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNN 205 (306)
T ss_pred CHHHHHHHHHhcCceeEE-EeeeccccCccCce-EEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccc
Confidence 346799999999999776 46667789999999 9999988544 33344555666666655554221 000000000
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHH
Q psy16184 81 LEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAY 160 (363)
Q Consensus 81 ~~~~~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai 160 (363)
......................++++|++..++...+..+|..+|.+..+.+...........+.++.+.....+..++
T Consensus 206 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 206 -LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred -cchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 0000000011122233445678999999999999999999999999977777655444444455555555444444444
Q ss_pred H
Q psy16184 161 K 161 (363)
Q Consensus 161 ~ 161 (363)
.
T Consensus 285 ~ 285 (306)
T COG0724 285 S 285 (306)
T ss_pred c
Confidence 4
No 124
>KOG2068|consensus
Probab=96.97 E-value=0.0006 Score=62.94 Aligned_cols=86 Identities=21% Similarity=0.359 Sum_probs=64.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHH---HHHHHhhCCccEEEEeccCC--CCC-cceEEEEEecCHHHHHHHHHHhCCceeC
Q psy16184 96 ATMDPFKTLFIARVNYDTSESKL---RREFEVYGPIKKIVMVHNKV--TGK-PRGYAFIEYEHERDMHSAYKHADGKKID 169 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~~t~~~L---~~~F~~~G~i~~v~i~~d~~--t~~-~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 169 (363)
.......-+||-+|+..+..+.+ .++|.+||.|..|.+-.++. .+. ...-+||+|...++|..||..++|..++
T Consensus 72 ~rvVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d 151 (327)
T KOG2068|consen 72 VRVVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD 151 (327)
T ss_pred chhhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh
Confidence 33345567999999988755444 35899999999998876552 111 1223899999999999999999999999
Q ss_pred CEEEEEEeeccc
Q psy16184 170 GRRVLVDVERSR 181 (363)
Q Consensus 170 g~~i~V~~a~~~ 181 (363)
|+.|+..+...+
T Consensus 152 g~~lka~~gttk 163 (327)
T KOG2068|consen 152 GRALKASLGTTK 163 (327)
T ss_pred hhhhHHhhCCCc
Confidence 999877776543
No 125
>KOG1996|consensus
Probab=96.94 E-value=0.0027 Score=57.40 Aligned_cols=64 Identities=19% Similarity=0.317 Sum_probs=51.4
Q ss_pred HHHHHHHHhhCCccEEEEeccCCCCCcce-EEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 116 SKLRREFEVYGPIKKIVMVHNKVTGKPRG-YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 116 ~~L~~~F~~~G~i~~v~i~~d~~t~~~~g-~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
+++.+.+.+||.|..|.|...+....... --||+|...++|.+|+..|||..|+|+.+..-|..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45667788999999998876653333322 47999999999999999999999999998776643
No 126
>KOG2253|consensus
Probab=96.77 E-value=0.0022 Score=64.09 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=62.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
+..+|||+||...+..+-+..++..||.|..+..+. |||+.|..+..+..|+..|+-..++|..+.+...
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 456999999999999999999999999998876643 9999999999999999999999999998887764
No 127
>KOG2193|consensus
Probab=96.63 E-value=0.0019 Score=61.12 Aligned_cols=73 Identities=23% Similarity=0.401 Sum_probs=58.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhC-CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCc-eeCCEEEEEEeec
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYG-PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGK-KIDGRRVLVDVER 179 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~-~i~g~~i~V~~a~ 179 (363)
..||++||.+.++..+|..+|...- ....-.|+. .||+||.+.+..-|.+|++.|+|. ++.|+.+.|++.-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4799999999999999999997541 111112222 489999999999999999999986 6899999999876
Q ss_pred cc
Q psy16184 180 SR 181 (363)
Q Consensus 180 ~~ 181 (363)
++
T Consensus 75 ~k 76 (584)
T KOG2193|consen 75 PK 76 (584)
T ss_pred hH
Confidence 54
No 128
>KOG4368|consensus
Probab=96.61 E-value=0.0026 Score=62.38 Aligned_cols=8 Identities=25% Similarity=0.779 Sum_probs=3.5
Q ss_pred CCCCCCcc
Q psy16184 32 KKTHGYSG 39 (363)
Q Consensus 32 ~~s~g~~g 39 (363)
+...||.|
T Consensus 351 ~~~pg~pG 358 (757)
T KOG4368|consen 351 RGDPGWNG 358 (757)
T ss_pred CCCCCCCC
Confidence 33444444
No 129
>KOG0112|consensus
Probab=96.51 E-value=0.00087 Score=68.85 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=66.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
.+.+||+|||+..+++.+|+..|..+|.|..|.|-..+ -+.-..||||.|.+...+..|+..|.+..|....+.+-+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 46799999999999999999999999999999995542 23445699999999999999999999888876676666664
No 130
>KOG0115|consensus
Probab=96.49 E-value=0.0036 Score=55.68 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=63.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCC----ceeCCEEEEEEe
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADG----KKIDGRRVLVDV 177 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g----~~i~g~~i~V~~ 177 (363)
..|||.||+..+..+.|...|..||.|....++.| ..++..+-++|.|...-.|.+|+..++- ..+.+.++.|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 58999999999999999999999999987777666 4688889999999999999999987632 234566666665
Q ss_pred ecc
Q psy16184 178 ERS 180 (363)
Q Consensus 178 a~~ 180 (363)
...
T Consensus 111 ~eq 113 (275)
T KOG0115|consen 111 MEQ 113 (275)
T ss_pred hhc
Confidence 543
No 131
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.46 E-value=0.022 Score=39.79 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=45.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhh---CCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHh
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVY---GPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~---G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l 163 (363)
..+|+|.||. +++.++|+.+|..| .....|.++.|. -|-|.|.+.+.|..||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3489999996 47889999999998 235578888774 6889999999999999865
No 132
>KOG0128|consensus
Probab=96.43 E-value=0.00018 Score=73.37 Aligned_cols=67 Identities=22% Similarity=0.338 Sum_probs=58.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI 168 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 168 (363)
+++||.||++.+.+.+|...|..+|.|..+.|.....++..+|+|||+|..++.+.+||....++.+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 4799999999999999999999999988888876667899999999999999999999985444433
No 133
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.30 E-value=0.015 Score=42.93 Aligned_cols=54 Identities=11% Similarity=0.259 Sum_probs=41.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
...||+ +|..+...+|.++|+.||.|. |.++.| .-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 456666 999999999999999999885 555555 389999999999999988775
No 134
>KOG4207|consensus
Probab=96.27 E-value=0.00061 Score=58.54 Aligned_cols=62 Identities=19% Similarity=0.294 Sum_probs=50.4
Q ss_pred CCChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc--CCCCCCCCCCCcccHHHHHH
Q psy16184 4 FLPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEF--EDPKDTPPPTRVETREERLE 67 (363)
Q Consensus 4 ~~p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~--~~~~~~~~~~~~~~~~~~~~ 67 (363)
+-|.+|..+|+.+|-|..+ -|.+++.|+.++|| +||-|-..- +++.+++.+..++++++.++
T Consensus 25 Tspd~LrrvFekYG~vgDV-yIPrdr~Tr~sRgF-aFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 25 TSPDDLRRVFEKYGRVGDV-YIPRDRYTRQSRGF-AFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CCHHHHHHHHHHhCcccce-ecccccccccccce-eEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 4678899999999999998 68999999999999 888886643 35666777777777776654
No 135
>KOG0113|consensus
Probab=96.15 E-value=0.015 Score=52.94 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=30.9
Q ss_pred CChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q psy16184 5 LPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAF 43 (363)
Q Consensus 5 ~p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f 43 (363)
-...|...|..++||.-+ -|..+..|++|+|| +||.|
T Consensus 114 ~EskLrreF~~YG~Ikri-rlV~d~vTgkskGY-AFIey 150 (335)
T KOG0113|consen 114 SESKLRREFEKYGPIKRI-RLVRDKVTGKSKGY-AFIEY 150 (335)
T ss_pred cHHHHHHHHHhcCcceeE-EEeeecccCCccce-EEEEe
Confidence 345688999999999998 57779999999999 66666
No 136
>KOG1365|consensus
Probab=96.06 E-value=0.017 Score=54.26 Aligned_cols=72 Identities=19% Similarity=0.333 Sum_probs=54.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhh----CCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 103 TLFIARVNYDTSESKLRREFEVY----GPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 103 ~l~V~nL~~~~t~~~L~~~F~~~----G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
.|-+.+||+++|+.++.+||..- |.+..|.++.. .+|+..|-|||.|..+++|+.||.. |...|+-+.|.|-
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 46667999999999999999732 34445555554 3789999999999999999999985 5555555555443
No 137
>KOG4454|consensus
Probab=95.82 E-value=0.0013 Score=56.98 Aligned_cols=65 Identities=22% Similarity=0.381 Sum_probs=55.0
Q ss_pred eEEEcC----CCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy16184 103 TLFIAR----VNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI 168 (363)
Q Consensus 103 ~l~V~n----L~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 168 (363)
+++.|| |...++++.+...|+..|.|..+.+..+. .|.++.|+||+|......-.|+....+..+
T Consensus 82 ~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 82 TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred ccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 677787 78889999999999999999999998774 588899999999988888888876665544
No 138
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.79 E-value=0.053 Score=44.17 Aligned_cols=76 Identities=13% Similarity=0.288 Sum_probs=56.8
Q ss_pred CCCCCCCeEEEcCCCCCCC-HH---HHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCE
Q psy16184 96 ATMDPFKTLFIARVNYDTS-ES---KLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 171 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~~t-~~---~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 171 (363)
...+|..||.|.=|..++. .+ .|...++.||+|..|.+.- +--|.|.|.+..+|=.|+.+++. ..-|.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgt 152 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGT 152 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCc
Confidence 3456677899986665552 23 4455677899999998842 24799999999999999999875 56777
Q ss_pred EEEEEeec
Q psy16184 172 RVLVDVER 179 (363)
Q Consensus 172 ~i~V~~a~ 179 (363)
.+.+.|-.
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 88887754
No 139
>KOG4307|consensus
Probab=95.65 E-value=0.013 Score=58.93 Aligned_cols=78 Identities=17% Similarity=0.071 Sum_probs=64.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccE-EEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKK-IVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~-v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+..|||-.||..+++.++..+|...-.|++ |.|..- -+++..+.|||.|..++.+..|+..-+.+.++.+.|.|.-.
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 3568999999999999999999998877777 655444 47888999999999988888888765666677788888754
No 140
>KOG2135|consensus
Probab=95.60 E-value=0.0079 Score=57.86 Aligned_cols=73 Identities=15% Similarity=0.279 Sum_probs=59.3
Q ss_pred CeEEEcCCCCCC-CHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 102 KTLFIARVNYDT-SESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 102 ~~l~V~nL~~~~-t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
+.|-+.-+++.+ |..+|..+|.+||+|..|.|-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|-|-++
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 344455555554 56899999999999999988543 3479999999999988887 699999999999999876
Q ss_pred c
Q psy16184 181 R 181 (363)
Q Consensus 181 ~ 181 (363)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 141
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.06 E-value=0.11 Score=37.80 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=40.3
Q ss_pred eEEEc-CCCCCCCHHHHHHHHHhhCC-----ccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 103 TLFIA-RVNYDTSESKLRREFEVYGP-----IKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 103 ~l~V~-nL~~~~t~~~L~~~F~~~G~-----i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
+|||. +--..++..+|..+|...+. |-.|.|.. .|+||+-.. +.|..++..|++..+.|+.|.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 33456888999999887654 44677744 399999865 57888999999999999999998
Q ss_pred ee
Q psy16184 177 VE 178 (363)
Q Consensus 177 ~a 178 (363)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 142
>KOG0149|consensus
Probab=95.02 E-value=0.0027 Score=55.76 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=47.4
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC-CCCCCCCCCCcccHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE-DPKDTPPPTRVETREERLER 68 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~-~~~~~~~~~~~~~~~~~~~~ 68 (363)
..|..+|..+|-|..+ .|.-|-.|++|+|| |||+|.+... .-+.+.+.+.|+++......
T Consensus 27 ~~l~~yFeqfGeI~ea-vvitd~~t~rskGy-GfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 27 ETLRRYFEQFGEIVEA-VVITDKNTGRSKGY-GFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred HHHHHHHHHhCceEEE-EEEeccCCccccce-eeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 3588999999999988 45568999999999 9999998665 33455666778888766554
No 143
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.01 E-value=0.023 Score=48.86 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=50.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHh-hCCc---cEEEEeccC--CCCCcceEEEEEecCHHHHHHHHHHhCCceeC---C-
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEV-YGPI---KKIVMVHNK--VTGKPRGYAFIEYEHERDMHSAYKHADGKKID---G- 170 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~-~G~i---~~v~i~~d~--~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~---g- 170 (363)
..+|.|.+||+.+|++++.+.+.. ++.. ..+...... .......-|||.|.+.+++..-+..++|+.|. |
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 458999999999999999886665 5544 233211111 11223457999999999999999999997763 2
Q ss_pred -EEEEEEeecc
Q psy16184 171 -RRVLVDVERS 180 (363)
Q Consensus 171 -~~i~V~~a~~ 180 (363)
....|++|--
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 3456777654
No 144
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.96 E-value=0.26 Score=38.85 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=52.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhh-CCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC---EEEEEE
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVY-GPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDG---RRVLVD 176 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~-G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g---~~i~V~ 176 (363)
+..+.+...|+.++.+.|..+.+.+ ..|..+.|+.+. ..++-.++|.|.+...|..-+..+||+.++. ..++|-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvv 90 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVV 90 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEE
Confidence 3445555666666667776665555 357788888763 2355679999999999999999999987653 344444
Q ss_pred e
Q psy16184 177 V 177 (363)
Q Consensus 177 ~ 177 (363)
+
T Consensus 91 f 91 (110)
T PF07576_consen 91 F 91 (110)
T ss_pred E
Confidence 4
No 145
>KOG2548|consensus
Probab=94.83 E-value=0.0071 Score=58.78 Aligned_cols=10 Identities=0% Similarity=0.156 Sum_probs=4.7
Q ss_pred cCHHHHHHHH
Q psy16184 151 EHERDMHSAY 160 (363)
Q Consensus 151 ~~~~~a~~Ai 160 (363)
.+.++|.++.
T Consensus 235 kdkeea~a~k 244 (653)
T KOG2548|consen 235 KDKEEAKAQK 244 (653)
T ss_pred hhHHHHHHHH
Confidence 4455554443
No 146
>KOG4574|consensus
Probab=94.83 E-value=0.094 Score=54.12 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=64.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee--CCEEEEEEeecc
Q psy16184 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI--DGRRVLVDVERS 180 (363)
Q Consensus 103 ~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i--~g~~i~V~~a~~ 180 (363)
+.++.|.+-..+...|..+|..||.|..++.+.+- ..|.|+|.+.+.|..|+.+|+|+.+ .|.+..|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 56677888888999999999999999999887763 5899999999999999999999864 688899999986
Q ss_pred cC
Q psy16184 181 RT 182 (363)
Q Consensus 181 ~~ 182 (363)
.+
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 54
No 147
>KOG4285|consensus
Probab=94.54 E-value=0.12 Score=47.32 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=49.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEE-EEEEe
Q psy16184 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR-VLVDV 177 (363)
Q Consensus 104 l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~-i~V~~ 177 (363)
|-|-++++..+ ..|..+|.+||.|...... ..-.|-+|.|.+..+|.+||.. ||+.|+|.. |-|..
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKP 266 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeee
Confidence 44557776543 5677899999999776443 2234899999999999999994 999998865 44554
No 148
>KOG4660|consensus
Probab=94.42 E-value=0.067 Score=52.73 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=63.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHH-hhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee---C-CEEEE
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFE-VYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI---D-GRRVL 174 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~-~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i---~-g~~i~ 174 (363)
+-+++.|.|++...|...|...-. ..|.-..+.++.|-.+..+.|||||-|.+.+.+..+++++||+.. + .+.+.
T Consensus 387 ~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~ 466 (549)
T KOG4660|consen 387 PRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIAS 466 (549)
T ss_pred chhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeee
Confidence 356788889988877776655543 357777888888888888999999999999999999999999743 3 45567
Q ss_pred EEeecc
Q psy16184 175 VDVERS 180 (363)
Q Consensus 175 V~~a~~ 180 (363)
|.||+-
T Consensus 467 itYArI 472 (549)
T KOG4660|consen 467 ITYARI 472 (549)
T ss_pred eehhhh
Confidence 777753
No 149
>KOG2888|consensus
Probab=94.23 E-value=0.011 Score=54.39 Aligned_cols=9 Identities=33% Similarity=0.962 Sum_probs=4.8
Q ss_pred ceEEEEEec
Q psy16184 143 RGYAFIEYE 151 (363)
Q Consensus 143 ~g~afV~f~ 151 (363)
.||-||-|.
T Consensus 160 lGFmYiRYt 168 (453)
T KOG2888|consen 160 LGFMYIRYT 168 (453)
T ss_pred heeeEEeec
Confidence 355555554
No 150
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=94.17 E-value=0.0035 Score=52.12 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=33.2
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
..+|..+|.++++|..+ .+..++.|++++|| +||.|.+.
T Consensus 48 e~~L~~~F~~~G~I~~v-~i~~d~~tg~~kGf-aFV~F~~~ 86 (144)
T PLN03134 48 DASLRDAFAHFGDVVDA-KVIVDRETGRSRGF-GFVNFNDE 86 (144)
T ss_pred HHHHHHHHhcCCCeEEE-EEEecCCCCCcceE-EEEEECCH
Confidence 35799999999999998 46678899999999 99999654
No 151
>KOG4210|consensus
Probab=93.70 E-value=0.055 Score=50.21 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=67.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
..+++||+++.+.+.+.++..+|..+|.+..+.+........++|+++|.|...+.+..||.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999999999999988887776666678889999999999999999999543356777776666654
Q ss_pred cc
Q psy16184 180 SR 181 (363)
Q Consensus 180 ~~ 181 (363)
..
T Consensus 167 ~~ 168 (285)
T KOG4210|consen 167 RR 168 (285)
T ss_pred cc
Confidence 43
No 152
>KOG0122|consensus
Probab=93.65 E-value=0.019 Score=50.83 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=33.9
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.++|..||-+++||.-+ -|.++..||.++|| +||+|...
T Consensus 203 E~dL~eLf~~fg~i~rv-ylardK~TG~~kGF-AFVtF~sR 241 (270)
T KOG0122|consen 203 EDDLEELFRPFGPITRV-YLARDKETGLSKGF-AFVTFESR 241 (270)
T ss_pred hhHHHHHhhccCcccee-EEEEccccCcccce-EEEEEecH
Confidence 46799999999999988 57789999999999 88888543
No 153
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.62 E-value=0.25 Score=42.77 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=45.4
Q ss_pred CHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCEEEEEEeecc
Q psy16184 114 SESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD--GKKIDGRRVLVDVERS 180 (363)
Q Consensus 114 t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~--g~~i~g~~i~V~~a~~ 180 (363)
....|+.+|..|+.+..+.++.. -+=..|.|.+.+.|..|...|+ +..|.|..|.|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 34789999999998888777553 3468899999999999999999 9999999999999854
No 154
>KOG2591|consensus
Probab=93.61 E-value=0.08 Score=52.16 Aligned_cols=68 Identities=18% Similarity=0.290 Sum_probs=53.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHh--hCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCEEEEE
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEV--YGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADG--KKIDGRRVLV 175 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~--~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g--~~i~g~~i~V 175 (363)
-|.|+|.-||..+-.++|+.+|.. |-.++.|.+..+ .-=||+|++..+|+.|+..|.. +.|.|++|..
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 356788999999999999999984 678888888554 2468999999999999887743 3456665543
No 155
>KOG2548|consensus
Probab=93.40 E-value=0.033 Score=54.32 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=7.4
Q ss_pred hhhcCCCCCCCCCCCCCC
Q psy16184 9 LLALFAPRDPVPYLPPVE 26 (363)
Q Consensus 9 l~~~f~~~~pi~~~~p~~ 26 (363)
++..|...--|-++|+|.
T Consensus 73 ~idrFDvRAhLdhi~~vd 90 (653)
T KOG2548|consen 73 QIDRFDVRAHLDHIPEVD 90 (653)
T ss_pred hhhhhhhHhhhccCCccC
Confidence 344444444444444333
No 156
>PLN03213 repressor of silencing 3; Provisional
Probab=93.18 E-value=0.015 Score=56.23 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=44.9
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc----cCCCCCCCCCCCcccHHHHHHHHHHH
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE----FEDPKDTPPPTRVETREERLERRRRE 72 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (363)
..+|..+|+++|.|..+..+ -.|+ +|| +||.|... +..+...+....+.|+.+++.+++..
T Consensus 24 EDDLravFSeFGsVkdVEIp---RETG--RGF-AFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 24 RDDLLKIFSPMGTVDAVEFV---RTKG--RSF-AYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred HHHHHHHHHhcCCeeEEEEe---cccC--Cce-EEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 35799999999999987533 3456 999 99999875 22455678888888887777654433
No 157
>KOG2318|consensus
Probab=92.76 E-value=0.53 Score=46.85 Aligned_cols=80 Identities=20% Similarity=0.363 Sum_probs=61.9
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhh----CCccEEEEeccC----------CCCC---------------------
Q psy16184 98 MDPFKTLFIARVNYD-TSESKLRREFEVY----GPIKKIVMVHNK----------VTGK--------------------- 141 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~-~t~~~L~~~F~~~----G~i~~v~i~~d~----------~t~~--------------------- 141 (363)
..+++.|-|.||.|. +...+|..+|..| |.|..|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999987 6789999999987 689999885421 1122
Q ss_pred ----------------cceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 142 ----------------PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 142 ----------------~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..-||.|+|.+.+.|.+.+..|+|.+|..-...+.+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 112799999999999999999999999765555554
No 158
>KOG2888|consensus
Probab=92.39 E-value=0.04 Score=50.79 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=4.5
Q ss_pred HHHHHHHHhh
Q psy16184 116 SKLRREFEVY 125 (363)
Q Consensus 116 ~~L~~~F~~~ 125 (363)
.+|..+|+.|
T Consensus 172 ~dLw~WyEpy 181 (453)
T KOG2888|consen 172 ADLWDWYEPY 181 (453)
T ss_pred hHHHHHhhhh
Confidence 3444444444
No 159
>KOG0151|consensus
Probab=92.19 E-value=0.15 Score=51.73 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=7.0
Q ss_pred eeCCEEEEEEee
Q psy16184 167 KIDGRRVLVDVE 178 (363)
Q Consensus 167 ~i~g~~i~V~~a 178 (363)
.|+|.+|.++..
T Consensus 632 ~ldgipm~~e~~ 643 (877)
T KOG0151|consen 632 DLDGIPMMVETK 643 (877)
T ss_pred cccCceeeeeec
Confidence 356666666643
No 160
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.05 E-value=1.6 Score=45.36 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=50.4
Q ss_pred EEEc-CCCCCCCHHHHHHHHHhhCCc-----cEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 104 LFIA-RVNYDTSESKLRREFEVYGPI-----KKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 104 l~V~-nL~~~~t~~~L~~~F~~~G~i-----~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
+||. +-...++..+|..++..-+.| -.|.|.. .|.||+... ..|...+..|++..|.|+.|.|+.
T Consensus 489 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 559 (629)
T PRK11634 489 YRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQL 559 (629)
T ss_pred EEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccccCCceEEEE
Confidence 4442 234567888888888766544 3556643 499999864 567888888999999999999998
Q ss_pred eccc
Q psy16184 178 ERSR 181 (363)
Q Consensus 178 a~~~ 181 (363)
+...
T Consensus 560 ~~~~ 563 (629)
T PRK11634 560 LGDA 563 (629)
T ss_pred CCCC
Confidence 7543
No 161
>KOG0125|consensus
Probab=91.68 E-value=0.0086 Score=55.10 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=45.6
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHH
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLER 68 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~ 68 (363)
-|||..+|..+|+|..+-.|- +..-|+|| |||+|.+... .+-.++-...|+++.|++..
T Consensus 110 dpDL~aMF~kfG~VldVEIIf---NERGSKGF-GFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 110 DPDLRAMFEKFGKVLDVEIIF---NERGSKGF-GFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CccHHHHHHhhCceeeEEEEe---ccCCCCcc-ceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 489999999999999885444 46789999 9999977544 33446777788888777654
No 162
>KOG0108|consensus
Probab=91.58 E-value=0.01 Score=58.03 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=49.6
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRER 73 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (363)
..|..+|+..+||..+. +..|+.||+++|| ||+.|.+... .+...++..++.++..++..+...+
T Consensus 33 ~~l~~~~~~~g~v~s~~-~v~D~~tG~~~G~-~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~ 99 (435)
T KOG0108|consen 33 EQLLSIFSGVGPVLSFR-LVYDRETGKPKGF-GFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRK 99 (435)
T ss_pred HHHHHHHhccCccceee-ecccccCCCcCce-eeEecCchhhHHHHHHhcCCcccCCceEEeecccccc
Confidence 45889999999999884 6779999999999 9999988555 3344577778877776666544433
No 163
>KOG2193|consensus
Probab=91.28 E-value=0.0093 Score=56.57 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=63.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
++++-|.|+|+...++.|..++.+||.|..|..+. |.--....-|+|.+.+.+..||..|||..|....+.|.|-.
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvn---t~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN---TDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc---cchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 45688999999999999999999999999887632 22223455689999999999999999999999999888753
No 164
>KOG0804|consensus
Probab=90.30 E-value=0.93 Score=43.88 Aligned_cols=68 Identities=21% Similarity=0.308 Sum_probs=56.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhh-CCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVY-GPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 170 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~-G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g 170 (363)
+..|+|-.+|..+|--+|..|+..| -.|.++.|+.|.. -++=.++|.|.+.++|...+..+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6789999999999999999999876 4788999998532 223358999999999999999999987753
No 165
>KOG0111|consensus
Probab=89.56 E-value=0.07 Score=46.54 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=43.5
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHH
Q psy16184 9 LLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLE 67 (363)
Q Consensus 9 l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~ 67 (363)
|...|-|++-|..+ .++.|..+.+-+|| |||.|..... .+.+.+...++-++.+++.
T Consensus 27 LhaAFIPFGDI~dI-qiPlDyesqkHRgF-gFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 27 LHAAFIPFGDIKDI-QIPLDYESQKHRGF-GFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred HHhccccccchhhc-ccccchhcccccce-eEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 67889999999988 57778899999999 9999977554 3455666666666655443
No 166
>KOG0126|consensus
Probab=88.47 E-value=0.052 Score=46.01 Aligned_cols=61 Identities=11% Similarity=0.215 Sum_probs=44.8
Q ss_pred CChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHH
Q psy16184 5 LPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLE 67 (363)
Q Consensus 5 ~p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~ 67 (363)
-..+|+.+|+++|-|..+. +++|-.||+|+|| .|..|.+.-. -+.+++++..|.++++++.
T Consensus 48 tEgDil~VFSqyGe~vdin-LiRDk~TGKSKGF-aFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 48 TEGDILCVFSQYGEIVDIN-LIRDKKTGKSKGF-AFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cCCcEEEEeeccCceEEEE-EEecCCCCcccce-EEEEecCccceEEEEeccCCceecceeEEee
Confidence 3567899999999999884 8889999999999 3333333222 3566778888888776653
No 167
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.02 E-value=3.2 Score=29.43 Aligned_cols=55 Identities=11% Similarity=0.332 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 112 DTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 112 ~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
.++-++|+..+..|+- . .|..++ .| =||.|.+..+|+.|+...+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678999999999973 2 343443 23 379999999999999999999988877765
No 168
>smart00361 RRM_1 RNA recognition motif.
Probab=87.33 E-value=0.031 Score=40.15 Aligned_cols=40 Identities=10% Similarity=-0.044 Sum_probs=29.0
Q ss_pred hhhhhcCC----CCCCCCCCCCCCCCCCC--CCCCCCcccccccccc
Q psy16184 7 PNLLALFA----PRDPVPYLPPVEKLPHE--KKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~----~~~pi~~~~p~~~~p~t--~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|. .+|+|..+.-+..++.+ +.++|| +||.|.+..
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~-~fV~f~~~~ 48 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGN-VYITFERSE 48 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEE-EEEEECCHH
Confidence 46778888 99999876423334444 889999 999997654
No 169
>KOG0835|consensus
Probab=86.60 E-value=1.2 Score=41.50 Aligned_cols=6 Identities=33% Similarity=1.032 Sum_probs=2.7
Q ss_pred EEEEec
Q psy16184 146 AFIEYE 151 (363)
Q Consensus 146 afV~f~ 151 (363)
.||-|.
T Consensus 176 v~vry~ 181 (367)
T KOG0835|consen 176 VFVRYS 181 (367)
T ss_pred eeeecC
Confidence 444443
No 170
>KOG4483|consensus
Probab=83.96 E-value=8.2 Score=37.00 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=47.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCC-ccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHH
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGP-IKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~-i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~ 162 (363)
-.+.|-|-|+|...-.++|...|..|+. --.|.|+-|. .||..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4568899999999988999999999974 4567777764 899999999999999984
No 171
>KOG0107|consensus
Probab=80.84 E-value=4.5 Score=34.40 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=7.8
Q ss_pred CCeEEEcCCCCC
Q psy16184 101 FKTLFIARVNYD 112 (363)
Q Consensus 101 ~~~l~V~nL~~~ 112 (363)
...|||.-.|+.
T Consensus 37 lrsvWvArnPPG 48 (195)
T KOG0107|consen 37 LRSVWVARNPPG 48 (195)
T ss_pred ceeEEEeecCCC
Confidence 457888766654
No 172
>KOG4410|consensus
Probab=78.94 E-value=7.9 Score=35.42 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=35.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCcc-EEEEeccCCCCCcceEEEEEecCH
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIK-KIVMVHNKVTGKPRGYAFIEYEHE 153 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~-~v~i~~d~~t~~~~g~afV~f~~~ 153 (363)
.-|||+||+.++.-.+|+..+.+.|-+- .+.+. | +.|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----G-HFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee-----c-CCcceeEecCCc
Confidence 4699999999999999999999877442 33331 1 357899999654
No 173
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=77.45 E-value=10 Score=36.41 Aligned_cols=74 Identities=22% Similarity=0.429 Sum_probs=55.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhh----CCccEEEEeccCC----------CC----------------------
Q psy16184 98 MDPFKTLFIARVNYD-TSESKLRREFEVY----GPIKKIVMVHNKV----------TG---------------------- 140 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~-~t~~~L~~~F~~~----G~i~~v~i~~d~~----------t~---------------------- 140 (363)
..++..|-|-||.|. +...+|..+|+.| |.|..|.|..... .|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 567889999999986 6788999999876 6787777643100 00
Q ss_pred ----C----------c-------------------ceEEEEEecCHHHHHHHHHHhCCceeCCE
Q psy16184 141 ----K----------P-------------------RGYAFIEYEHERDMHSAYKHADGKKIDGR 171 (363)
Q Consensus 141 ----~----------~-------------------~g~afV~f~~~~~a~~Ai~~l~g~~i~g~ 171 (363)
. - .-||.|++.+...+...+.+++|.++...
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s 286 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS 286 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc
Confidence 0 0 12789999999999999999999887644
No 174
>smart00360 RRM RNA recognition motif.
Probab=77.26 E-value=0.53 Score=32.31 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=29.5
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+. +...+.++.+.|+ +||.|.+.
T Consensus 11 ~~l~~~f~~~g~v~~~~-i~~~~~~~~~~~~-a~v~f~~~ 48 (71)
T smart00360 11 EELRELFSKFGKIESVR-LVRDKDTGKSKGF-AFVEFESE 48 (71)
T ss_pred HHHHHHHHhhCCEeEEE-EEeCCCCCCCCce-EEEEeCCH
Confidence 47899999999988773 4445667889999 88888554
No 175
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=76.00 E-value=4.1 Score=29.08 Aligned_cols=62 Identities=27% Similarity=0.446 Sum_probs=45.6
Q ss_pred HHHHHHHHhhC-CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 116 SKLRREFEVYG-PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 116 ~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
++|.+.|...| .|..|.-+..+.++.+.-..||+++...+...+ ++=..|++..|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 46778888888 677877777776777888899998876553433 444678899999987643
No 176
>KOG4019|consensus
Probab=75.90 E-value=3.1 Score=35.48 Aligned_cols=75 Identities=5% Similarity=0.073 Sum_probs=54.0
Q ss_pred CCCeEEEcCCCCCCCH-----HHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCE-EE
Q psy16184 100 PFKTLFIARVNYDTSE-----SKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR-RV 173 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~-----~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~-~i 173 (363)
-..+|++.+|+..+.. .....+|.+|.+.....++. +.++.-|.|.+++.|..|...+++..|.|. .|
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 3457888888876532 23455666666655544443 235677899999999999999999999998 77
Q ss_pred EEEeecc
Q psy16184 174 LVDVERS 180 (363)
Q Consensus 174 ~V~~a~~ 180 (363)
..-++.+
T Consensus 83 k~yfaQ~ 89 (193)
T KOG4019|consen 83 KLYFAQP 89 (193)
T ss_pred EEEEccC
Confidence 7777765
No 177
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=69.57 E-value=6.8 Score=27.93 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=44.6
Q ss_pred HHHHHHHHhhC-CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 116 SKLRREFEVYG-PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 116 ~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
.+|.+.|..+| .+..|.-+....+..+...-||+.....+... .|+=..|+|..|.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46888899888 67888888777777777788888876544333 345567889998888653
No 178
>KOG2295|consensus
Probab=68.06 E-value=0.7 Score=45.80 Aligned_cols=74 Identities=5% Similarity=0.084 Sum_probs=55.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEE
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 173 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 173 (363)
..|+|||.|++++++-.+|..++..+--+..+.+..........-+++|+|.---....|+.+||+..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 35789999999999999999999988666666654332223344578899998888888888888876654433
No 179
>KOG4213|consensus
Probab=66.90 E-value=4.8 Score=34.26 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=36.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhh-CCccEEEEeccCCCC--CcceEEEEEecCHHHHHHHHHH
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVY-GPIKKIVMVHNKVTG--KPRGYAFIEYEHERDMHSAYKH 162 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~-G~i~~v~i~~d~~t~--~~~g~afV~f~~~~~a~~Ai~~ 162 (363)
.++|.. +|+++|..+..-. |.+..|.+-.. ..+ ..+|-.||+|.+.+.|.+++..
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~-~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRH-GNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeecccc-CCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 355554 5666666555433 68877776432 223 4578899999999999988774
No 180
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=65.72 E-value=17 Score=28.90 Aligned_cols=56 Identities=18% Similarity=0.358 Sum_probs=30.5
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecC-HHHHHHHHH
Q psy16184 103 TLFIARVNYD---------TSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEH-ERDMHSAYK 161 (363)
Q Consensus 103 ~l~V~nL~~~---------~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~-~~~a~~Ai~ 161 (363)
+++|-|++.. ++...|.+.|..|..+. |..+.+. ..+.|+++|.|.. -.-...|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 5677787543 35688999999998875 4444543 2567999999974 444555555
No 181
>KOG2891|consensus
Probab=65.23 E-value=9.3 Score=34.80 Aligned_cols=68 Identities=24% Similarity=0.510 Sum_probs=43.6
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHHHhhCCccEEEEe-ccC----CCCCc-----ceEE---------EE
Q psy16184 100 PFKTLFIARVNYD------------TSESKLRREFEVYGPIKKIVMV-HNK----VTGKP-----RGYA---------FI 148 (363)
Q Consensus 100 ~~~~l~V~nL~~~------------~t~~~L~~~F~~~G~i~~v~i~-~d~----~t~~~-----~g~a---------fV 148 (363)
-..|||+.+||-. -+++-|...|..||.|..|.|+ +|+ -+|+. .||+ ||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3568999988832 3567899999999999999885 333 23443 3343 34
Q ss_pred EecCHHHHHHHHHHhCCce
Q psy16184 149 EYEHERDMHSAYKHADGKK 167 (363)
Q Consensus 149 ~f~~~~~a~~Ai~~l~g~~ 167 (363)
.|-.......|+.+|.|..
T Consensus 228 qfmeykgfa~amdalr~~k 246 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHHHhHHHHHHHHhcch
Confidence 4444444555666666643
No 182
>KOG4246|consensus
Probab=64.32 E-value=4.5 Score=42.28 Aligned_cols=11 Identities=18% Similarity=0.057 Sum_probs=6.3
Q ss_pred CCeEEEcCCCC
Q psy16184 101 FKTLFIARVNY 111 (363)
Q Consensus 101 ~~~l~V~nL~~ 111 (363)
...+|+|++..
T Consensus 145 ~qR~f~gvvtk 155 (1194)
T KOG4246|consen 145 PQRRFAGVVTK 155 (1194)
T ss_pred cceeeehhhhh
Confidence 44667766543
No 183
>KOG4208|consensus
Probab=62.75 E-value=2.1 Score=37.30 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=28.1
Q ss_pred ChhhhhcCCCC-CCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 6 PPNLLALFAPR-DPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 6 p~~l~~~f~~~-~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
-.+++.+|.++ +++.-+ -+.+--.||.|+|| +||.|.+.
T Consensus 63 e~~~~~~~~q~~g~v~r~-rlsRnkrTGNSKgY-AFVEFEs~ 102 (214)
T KOG4208|consen 63 ETEILNYFRQFGGTVTRF-RLSRNKRTGNSKGY-AFVEFESE 102 (214)
T ss_pred HHHHhhhhhhcCCeeEEE-EeecccccCCcCce-EEEEeccH
Confidence 45677777777 444444 46677889999999 89988543
No 184
>KOG1295|consensus
Probab=61.41 E-value=8.9 Score=36.60 Aligned_cols=68 Identities=12% Similarity=0.205 Sum_probs=48.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhC-CccEEEEeccCC--CCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYG-PIKKIVMVHNKV--TGKPRGYAFIEYEHERDMHSAYKHADGKKI 168 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G-~i~~v~i~~d~~--t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 168 (363)
-+.|.|.+||+..++.+|.+....|- .|....+..... -....++|||.|...+++..-...++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45788999999999999988877753 233333322111 122357899999999998888888888765
No 185
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=59.84 E-value=18 Score=27.15 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=33.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEec
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYE 151 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~ 151 (363)
..-|||||++..+.+.-...+....+.-.-+.+..+ ....||+|-++-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEeC
Confidence 447999999999888777777776655544444443 226799998873
No 186
>KOG4246|consensus
Probab=58.02 E-value=4.9 Score=42.00 Aligned_cols=8 Identities=25% Similarity=0.825 Sum_probs=4.7
Q ss_pred cceEEEEE
Q psy16184 142 PRGYAFIE 149 (363)
Q Consensus 142 ~~g~afV~ 149 (363)
.--|+||.
T Consensus 157 ~DtygfVD 164 (1194)
T KOG4246|consen 157 TDTYGFVD 164 (1194)
T ss_pred cccccccc
Confidence 33477774
No 187
>KOG4008|consensus
Probab=57.18 E-value=18 Score=32.26 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=29.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEE
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIV 132 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~ 132 (363)
+...+||+-|||..+|++.|..+.+++|-+..+.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 4466899999999999999999999999766553
No 188
>KOG4365|consensus
Probab=56.51 E-value=1.4 Score=42.51 Aligned_cols=78 Identities=6% Similarity=-0.172 Sum_probs=59.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
...|+..|+..+++.+|..+|.-||.|..+.+...-..+...-.+||+..+ .+|..+|..+.-..+.|-.+.|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456788899999999999999999999988776554455556678887754 456666666666667788888887754
No 189
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=56.32 E-value=23 Score=32.71 Aligned_cols=79 Identities=14% Similarity=0.274 Sum_probs=56.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccC-------CCCCcceEEEEEecCHHHHHHHHH----HhCC--ce
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNK-------VTGKPRGYAFIEYEHERDMHSAYK----HADG--KK 167 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~-------~t~~~~g~afV~f~~~~~a~~Ai~----~l~g--~~ 167 (363)
++.|.+.||...++--.+...|.+||.|+.|.++.+. ...+......+.|-+.+.|..-+. .|+. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999988888999999999999998764 122334577889988887765432 2221 34
Q ss_pred eCCEEEEEEeec
Q psy16184 168 IDGRRVLVDVER 179 (363)
Q Consensus 168 i~g~~i~V~~a~ 179 (363)
+....|.|.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 556666666653
No 190
>PLN03121 nucleic acid binding protein; Provisional
Probab=55.53 E-value=0.95 Score=40.57 Aligned_cols=53 Identities=4% Similarity=0.108 Sum_probs=35.8
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC-CCCCCCCCCCcccHH
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE-DPKDTPPPTRVETRE 63 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~-~~~~~~~~~~~~~~~ 63 (363)
+.+|..||+.+|+|..|- |..+ +.+.+| +||.|.+... ..+..+....|..+.
T Consensus 19 E~dLrefFS~~G~I~~V~-I~~D---~et~gf-AfVtF~d~~aaetAllLnGa~l~d~~ 72 (243)
T PLN03121 19 EKDVYDFFSHCGAIEHVE-IIRS---GEYACT-AYVTFKDAYALETAVLLSGATIVDQR 72 (243)
T ss_pred HHHHHHHHHhcCCeEEEE-EecC---CCcceE-EEEEECCHHHHHHHHhcCCCeeCCce
Confidence 457999999999999984 4444 455678 9999987544 333345555554443
No 191
>PLN03120 nucleic acid binding protein; Provisional
Probab=53.84 E-value=1.3 Score=40.27 Aligned_cols=36 Identities=8% Similarity=0.229 Sum_probs=27.2
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
..+|..||+.+|+|..+- |..+. .+.|| +||+|.+.
T Consensus 18 E~dLrefFS~~G~I~~V~-I~~d~---~~~Gf-AFVtF~d~ 53 (260)
T PLN03120 18 ERDIKEFFSFSGDIEYVE-MQSEN---ERSQI-AYVTFKDP 53 (260)
T ss_pred HHHHHHHHHhcCCeEEEE-EeecC---CCCCE-EEEEeCcH
Confidence 357999999999999884 43333 35789 99999763
No 192
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=51.63 E-value=25 Score=26.94 Aligned_cols=49 Identities=8% Similarity=0.152 Sum_probs=32.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecC
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEH 152 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~ 152 (363)
..-||||+++..+.+.-...+-+.++.-.-+.+..+ ....||+|-++-.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCC
Confidence 347999999988877666666666655333334332 2334999998865
No 193
>KOG0226|consensus
Probab=45.26 E-value=31 Score=31.26 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=50.3
Q ss_pred CeEEEcCCCCCCCHHH-H--HHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 102 KTLFIARVNYDTSESK-L--RREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~-L--~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
..+|++|+-..+..+- | ...|..|-.+....++.+. -+...+++|+.|.......++...-+++.|.-..|.+.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 4567777766665544 3 5667766666666666653 56678999999998888777777667777766654443
No 194
>KOG3702|consensus
Probab=41.46 E-value=12 Score=38.30 Aligned_cols=71 Identities=20% Similarity=0.196 Sum_probs=56.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEE
Q psy16184 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 174 (363)
Q Consensus 103 ~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 174 (363)
+||+-|-....+..-|..+|..++.+..+.++.....+...+-+|++|.....+..|.. |.+..+....+.
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~k 583 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLK 583 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-ccccccccccee
Confidence 78888888888888899999999999988888777777777899999999988877765 555555544443
No 195
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=40.10 E-value=61 Score=22.61 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=15.1
Q ss_pred HHHHHHHHhhCCccEEEE
Q psy16184 116 SKLRREFEVYGPIKKIVM 133 (363)
Q Consensus 116 ~~L~~~F~~~G~i~~v~i 133 (363)
.+|+++|+..|+|.-+.|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999976655
No 196
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=38.78 E-value=25 Score=26.37 Aligned_cols=49 Identities=8% Similarity=0.060 Sum_probs=29.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHh-hCCccEEEEeccCCCCCcceEEEEEecC
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEV-YGPIKKIVMVHNKVTGKPRGYAFIEYEH 152 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~-~G~i~~v~i~~d~~t~~~~g~afV~f~~ 152 (363)
..-||||+++..+.+.-...+-+. .+.-.-+.+.. +....||+|-++-.
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~---~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWS---SNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEe---CCCCCCcEEEecCC
Confidence 447999999988876554444444 33322222222 23356899988754
No 197
>KOG4840|consensus
Probab=34.23 E-value=77 Score=28.45 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=39.2
Q ss_pred CCeEEEcCCCCCCCH----HHHHHHHHhhC-CccEEEEeccCCCCCcceEEEEEe-cCHHHHHHHHHHhCCceeCCEEEE
Q psy16184 101 FKTLFIARVNYDTSE----SKLRREFEVYG-PIKKIVMVHNKVTGKPRGYAFIEY-EHERDMHSAYKHADGKKIDGRRVL 174 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~----~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~f-~~~~~a~~Ai~~l~g~~i~g~~i~ 174 (363)
...||||+|....-. +.|...+-..+ .+..+.+ .....|||.-.. .+.++...+|+.+.+..+.-..+.
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~-----~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL 111 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQL-----RSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVL 111 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeec-----cccccccccccccccHHHHHHHHHHhhccCcccceEE
Confidence 457999999765432 33433333322 1222222 223345554433 366777777776666555555566
Q ss_pred EEeec
Q psy16184 175 VDVER 179 (363)
Q Consensus 175 V~~a~ 179 (363)
|-++.
T Consensus 112 ~GhST 116 (299)
T KOG4840|consen 112 VGHST 116 (299)
T ss_pred EecCc
Confidence 65544
No 198
>KOG0116|consensus
Probab=33.18 E-value=5.8 Score=38.88 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=29.2
Q ss_pred CCCChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC
Q psy16184 3 QFLPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE 48 (363)
Q Consensus 3 ~~~p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~ 48 (363)
++.+.+|..+|..+++|...=...+-|. ++...| |||.|.+...
T Consensus 299 da~~~~l~~~Fk~FG~Ik~~~I~vr~~~-~~~~~f-gFV~f~~~~~ 342 (419)
T KOG0116|consen 299 DATPAELEEVFKQFGPIKEGGIQVRSPG-GKNPCF-GFVEFENAAA 342 (419)
T ss_pred CCCHHHHHHHHhhcccccccceEEeccC-CCcCce-EEEEEeecch
Confidence 4567789999999999997532222232 233377 8998877554
No 199
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=32.43 E-value=1e+02 Score=23.61 Aligned_cols=49 Identities=8% Similarity=-0.010 Sum_probs=29.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCc-cEEEEec----cCCCCCcceEEEEEec
Q psy16184 103 TLFIARVNYDTSESKLRREFEVYGPI-KKIVMVH----NKVTGKPRGYAFIEYE 151 (363)
Q Consensus 103 ~l~V~nL~~~~t~~~L~~~F~~~G~i-~~v~i~~----d~~t~~~~g~afV~f~ 151 (363)
..|+.|||.++.+.++...-..+... ..+.|.. ....+...|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 56899999999887776655554332 2444443 2345566677665443
No 200
>KOG1049|consensus
Probab=32.20 E-value=66 Score=32.34 Aligned_cols=9 Identities=33% Similarity=0.508 Sum_probs=3.6
Q ss_pred EEEEEecCH
Q psy16184 145 YAFIEYEHE 153 (363)
Q Consensus 145 ~afV~f~~~ 153 (363)
|||-+|...
T Consensus 181 YGFNEeTWk 189 (538)
T KOG1049|consen 181 YGFNEETWK 189 (538)
T ss_pred cccCHHHHH
Confidence 344444333
No 201
>KOG0130|consensus
Probab=32.01 E-value=3.5 Score=33.50 Aligned_cols=37 Identities=11% Similarity=0.220 Sum_probs=28.5
Q ss_pred CChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q psy16184 5 LPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAF 43 (363)
Q Consensus 5 ~p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f 43 (363)
...++...|..+++|..+- +-.|--|+-.+|| .+|.|
T Consensus 85 tEedi~d~F~dyGeiKNih-LNLDRRtGy~KGY-aLvEY 121 (170)
T KOG0130|consen 85 TEEDIHDKFADYGEIKNIH-LNLDRRTGYVKGY-ALVEY 121 (170)
T ss_pred hHHHHHHHHhhccccccee-eccccccccccce-eeeeh
Confidence 4567899999999999873 5557788999999 44444
No 202
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.69 E-value=58 Score=23.20 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=23.1
Q ss_pred eEEEEEecCHHHHHHHHHHhCCceeCCEE
Q psy16184 144 GYAFIEYEHERDMHSAYKHADGKKIDGRR 172 (363)
Q Consensus 144 g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 172 (363)
.+++|+|.+...|.+|-..|....|..+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 47899999999999998888766554444
No 203
>KOG4388|consensus
Probab=31.35 E-value=82 Score=32.31 Aligned_cols=59 Identities=10% Similarity=0.192 Sum_probs=39.3
Q ss_pred CCCeEEEcCCCCCCCHH-HHHHHHHhhCCccEEEEeccCCCCCcceEEEEEe-----cCHHHHHHHHHHhC
Q psy16184 100 PFKTLFIARVNYDTSES-KLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEY-----EHERDMHSAYKHAD 164 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~-~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f-----~~~~~a~~Ai~~l~ 164 (363)
|.+.|...++.+-.++. .+..-+...|.+..+.|+.+- -.||+.| +..+.++.||+.|.
T Consensus 788 Pp~~i~ac~mDP~LDD~vmfA~kLr~lG~~v~l~vle~l------PHGFLnft~ls~E~~~~~~~CI~rl~ 852 (880)
T KOG4388|consen 788 PPVHIVACAMDPMLDDSVMFARKLRNLGQPVTLRVLEDL------PHGFLNFTALSRETRQAAELCIERLR 852 (880)
T ss_pred CCceEEEeccCcchhHHHHHHHHHHhcCCceeehhhhcC------CccceeHHhhCHHHHHHHHHHHHHHH
Confidence 44567677887766543 344556678999999887653 3667777 45567777777654
No 204
>KOG0156|consensus
Probab=31.30 E-value=70 Score=32.23 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=45.3
Q ss_pred eEEEcCCCCCCC---HHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEE
Q psy16184 103 TLFIARVNYDTS---ESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 173 (363)
Q Consensus 103 ~l~V~nL~~~~t---~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 173 (363)
-=+||||+.-.. ...|..+-.+||.|-.+++-. .-.|...+.+.|..|+.. |+..+.+++.
T Consensus 34 lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 34 LPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 345888875433 355666667899999888732 246788899999999984 8999999886
No 205
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=31.15 E-value=65 Score=29.51 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=25.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEe
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMV 134 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~ 134 (363)
....|+|||+++|..-|..++...-.+..+.++
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 467799999999999999998865555444443
No 206
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=30.27 E-value=1e+02 Score=22.74 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=25.4
Q ss_pred CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy16184 127 PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI 168 (363)
Q Consensus 127 ~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 168 (363)
.|..+..+. ..+||-||+=.+..++..|+..+.+...
T Consensus 33 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAPD-----SLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE-T-----TSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEeC-----CCceEEEEEeCCHHHHHHHHhcccceee
Confidence 355555533 3689999999999999999998776543
No 207
>PRK11901 hypothetical protein; Reviewed
Probab=28.86 E-value=1.3e+02 Score=28.46 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=39.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEE--EecCHHHHHHHHHHhCC
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFI--EYEHERDMHSAYKHADG 165 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV--~f~~~~~a~~Ai~~l~g 165 (363)
..+|-|..+ ..++.|..|...++ +..++|..-...|+. .|..| .|.+.++|..||..|..
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 345555543 45788888888775 455666554334443 35443 78999999999998764
No 208
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=26.90 E-value=2.2e+02 Score=22.17 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=27.6
Q ss_pred HHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHH
Q psy16184 116 SKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161 (363)
Q Consensus 116 ~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~ 161 (363)
.+|..++..+| |..-.|..+..+ +.-||+++|.+.+..-++|.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHHh
Confidence 56788888888 555555555322 34599999995555444443
No 209
>KOG0415|consensus
Probab=25.51 E-value=22 Score=33.65 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=29.7
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAF 43 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f 43 (363)
.+|.-+|+.+|+|..| .|.++-.|+-+..| .||.|
T Consensus 254 eDLeiIFSrFG~i~sc-eVIRD~ktgdsLqy-aFiEF 288 (479)
T KOG0415|consen 254 EDLEIIFSRFGKIVSC-EVIRDRKTGDSLQY-AFIEF 288 (479)
T ss_pred cchhhHHhhcccceee-eEEecccccchhhe-eeeee
Confidence 3688899999999999 57789999999999 55555
No 210
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=24.72 E-value=31 Score=33.28 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=38.6
Q ss_pred HHHHHHHHHh--hCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHH
Q psy16184 115 ESKLRREFEV--YGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161 (363)
Q Consensus 115 ~~~L~~~F~~--~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~ 161 (363)
.++|..+|.. .+.+..|.+-.+.......|-.|++|.....|+.++.
T Consensus 196 ~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 196 QEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4588999988 5777777777776677888999999999999998874
No 211
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=24.10 E-value=90 Score=29.24 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=26.2
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecccCC
Q psy16184 146 AFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTV 183 (363)
Q Consensus 146 afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~~~ 183 (363)
|||+|.+..+|..|++.+.... +..+.|..|.....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999999655444 34457776654433
No 212
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.95 E-value=2.4e+02 Score=18.78 Aligned_cols=54 Identities=9% Similarity=0.203 Sum_probs=39.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCH----HHHHHHHHH
Q psy16184 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE----RDMHSAYKH 162 (363)
Q Consensus 103 ~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~----~~a~~Ai~~ 162 (363)
||.|.||.-..-...|...+...-.|..+.+-.. .+-+-|.|... +....+|..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5778888777777889999998877888877543 25777888643 566666664
No 213
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=22.52 E-value=2.9e+02 Score=20.96 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=34.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhh--------CCccEEEEecc-----CCCCCcce-EEEEEecCHHHHHHHHHH
Q psy16184 103 TLFIARVNYDTSESKLRREFEVY--------GPIKKIVMVHN-----KVTGKPRG-YAFIEYEHERDMHSAYKH 162 (363)
Q Consensus 103 ~l~V~nL~~~~t~~~L~~~F~~~--------G~i~~v~i~~d-----~~t~~~~g-~afV~f~~~~~a~~Ai~~ 162 (363)
++|| |.+.++++++..+...+ |.|..+.-+-. +..+...| |.++.|....++.+.++.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 5666 45666776666655443 46666543221 12355666 588899877777777664
No 214
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=22.51 E-value=45 Score=31.64 Aligned_cols=48 Identities=13% Similarity=0.105 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q psy16184 115 ESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGK 166 (363)
Q Consensus 115 ~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~ 166 (363)
...|.+++.+.|.|..-.+.. -.+.|.+||.+-.++++..+++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~r----tFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYR----TFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHH----HhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 467888888999887655532 235689999999999999999998865
No 215
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=22.08 E-value=1.4e+02 Score=22.46 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=23.4
Q ss_pred EEEEecCHHHHHHHHHHhCC--ceeCCEEEEEEee
Q psy16184 146 AFIEYEHERDMHSAYKHADG--KKIDGRRVLVDVE 178 (363)
Q Consensus 146 afV~f~~~~~a~~Ai~~l~g--~~i~g~~i~V~~a 178 (363)
|+|+|.+..-|+..+.. .. ..+++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEE
Confidence 68999999999998873 33 3456776666654
No 216
>PF15063 TC1: Thyroid cancer protein 1
Probab=21.07 E-value=66 Score=23.36 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.1
Q ss_pred EEcCCCCCCCHHHHHHHHHhhCCcc
Q psy16184 105 FIARVNYDTSESKLRREFEVYGPIK 129 (363)
Q Consensus 105 ~V~nL~~~~t~~~L~~~F~~~G~i~ 129 (363)
-+.||=.+++..+|+.+|..-|...
T Consensus 29 asaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 29 ASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred hhhhhhhccCHHHHHHHHHHccchh
Confidence 3677788999999999999999643
No 217
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=20.65 E-value=64 Score=29.38 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHH
Q psy16184 101 FKTLFIARVNYDTSESKLRREFE 123 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~ 123 (363)
...++|||||+.++..-|..++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 45689999999999999988887
No 218
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=20.24 E-value=2.2e+02 Score=22.51 Aligned_cols=72 Identities=11% Similarity=0.196 Sum_probs=35.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEec--C------HHHHHHHHHHhCCceeCCEEEE
Q psy16184 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYE--H------ERDMHSAYKHADGKKIDGRRVL 174 (363)
Q Consensus 103 ~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~--~------~~~a~~Ai~~l~g~~i~g~~i~ 174 (363)
.||||++|.....+.|... .+..|..+.-.. ......++-|+.|. + ......|+..++...-.|.+|.
T Consensus 7 ~l~~G~~~~~~~~~~l~~~--gi~~Vi~l~~~~--~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~Vl 82 (138)
T smart00195 7 HLYLGSYSSALNLALLKKL--GITHVINVTNEV--PNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVL 82 (138)
T ss_pred CeEECChhHcCCHHHHHHc--CCCEEEEccCCC--CCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEE
Confidence 5999999976654433332 223343332211 11123455555553 2 1233455555554445667777
Q ss_pred EEee
Q psy16184 175 VDVE 178 (363)
Q Consensus 175 V~~a 178 (363)
|.-.
T Consensus 83 VHC~ 86 (138)
T smart00195 83 VHCQ 86 (138)
T ss_pred EECC
Confidence 7654
Done!