Query psy16184
Match_columns 363
No_of_seqs 427 out of 3469
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 22:55:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 100.0 9.1E-47 3.1E-51 368.4 27.0 212 1-212 1-213 (437)
2 4fxv_A ELAV-like protein 1; RN 99.9 5.7E-22 2E-26 153.9 11.5 82 99-180 17-98 (99)
3 2cjk_A Nuclear polyadenylated 99.8 1.7E-23 5.7E-28 177.5 -3.7 149 7-181 18-166 (167)
4 3s8s_A Histone-lysine N-methyl 99.8 8E-21 2.7E-25 150.3 11.7 82 99-180 4-85 (110)
5 1l3k_A Heterogeneous nuclear r 99.8 4.7E-23 1.6E-27 179.3 -1.5 157 7-183 28-185 (196)
6 1u6f_A Tcubp1, RNA-binding pro 99.8 2.2E-20 7.6E-25 154.0 14.0 89 96-184 37-125 (139)
7 2qfj_A FBP-interacting repress 99.8 1.1E-22 3.8E-27 179.7 -0.7 163 7-184 43-208 (216)
8 2lxi_A RNA-binding protein 10; 99.8 5.8E-21 2E-25 145.9 8.7 82 101-182 1-84 (91)
9 2cqd_A RNA-binding region cont 99.8 5.6E-20 1.9E-24 146.8 14.6 86 97-183 13-98 (116)
10 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.1E-20 1.1E-24 144.7 11.8 89 97-185 8-96 (102)
11 4f02_A Polyadenylate-binding p 99.8 6.1E-23 2.1E-27 181.8 -4.5 150 7-181 30-181 (213)
12 2dnz_A Probable RNA-binding pr 99.8 3.1E-20 1.1E-24 142.7 11.2 85 99-183 3-87 (95)
13 1x5t_A Splicing factor 3B subu 99.8 4.6E-20 1.6E-24 142.1 12.0 85 99-183 3-88 (96)
14 2cq0_A Eukaryotic translation 99.8 4.7E-20 1.6E-24 144.0 12.0 89 95-183 9-97 (103)
15 3md3_A Nuclear and cytoplasmic 99.8 3.9E-22 1.3E-26 168.5 0.1 149 7-179 15-165 (166)
16 2cpz_A CUG triplet repeat RNA- 99.8 7.6E-20 2.6E-24 145.8 13.3 87 97-183 21-107 (115)
17 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.4E-20 1.5E-24 139.5 11.3 83 99-181 4-86 (87)
18 2lkz_A RNA-binding protein 5; 99.8 1.2E-20 4.2E-25 145.0 8.3 81 100-180 8-94 (95)
19 2dgo_A Cytotoxic granule-assoc 99.8 1.9E-19 6.6E-24 143.4 15.5 88 96-183 10-97 (115)
20 1x5u_A Splicing factor 3B subu 99.8 5.4E-20 1.9E-24 144.1 12.0 89 95-183 9-97 (105)
21 1whw_A Hypothetical protein ri 99.8 6.9E-20 2.4E-24 141.9 12.4 85 99-183 6-90 (99)
22 2dnm_A SRP46 splicing factor; 99.8 3.2E-20 1.1E-24 144.9 10.5 87 97-183 9-95 (103)
23 2dgs_A DAZ-associated protein 99.8 5.9E-20 2E-24 142.4 11.8 86 98-184 7-92 (99)
24 1h2v_Z 20 kDa nuclear CAP bind 99.8 7E-20 2.4E-24 154.1 13.2 86 98-183 36-121 (156)
25 1x5s_A Cold-inducible RNA-bind 99.8 7.6E-20 2.6E-24 142.5 12.3 87 97-183 8-94 (102)
26 3ex7_B RNA-binding protein 8A; 99.8 2.6E-20 9E-25 150.9 10.0 86 98-183 19-104 (126)
27 2fy1_A RNA-binding motif prote 99.8 9.2E-20 3.1E-24 145.6 12.9 85 98-183 4-88 (116)
28 3md1_A Nuclear and cytoplasmic 99.8 6.5E-20 2.2E-24 137.2 11.1 81 101-181 1-81 (83)
29 1b7f_A Protein (SXL-lethal pro 99.8 3.9E-22 1.3E-26 169.1 -1.3 147 7-178 18-168 (168)
30 3mdf_A Peptidyl-prolyl CIS-tra 99.8 6E-20 2.1E-24 138.1 10.6 81 99-179 5-85 (85)
31 2cqc_A Arginine/serine-rich sp 99.8 9.9E-20 3.4E-24 139.8 11.9 85 96-180 10-94 (95)
32 2x1f_A MRNA 3'-END-processing 99.8 8.8E-20 3E-24 140.6 11.3 83 100-182 1-83 (96)
33 2cpf_A RNA binding motif prote 99.8 8.3E-20 2.8E-24 141.2 11.1 85 99-183 3-90 (98)
34 2dng_A Eukaryotic translation 99.8 1.4E-19 4.7E-24 141.4 12.3 86 96-183 10-95 (103)
35 1x4h_A RNA-binding protein 28; 99.8 1.6E-19 5.6E-24 142.8 12.9 87 97-183 11-103 (111)
36 2do4_A Squamous cell carcinoma 99.8 1.5E-19 5.1E-24 140.4 12.3 85 97-182 13-97 (100)
37 3p5t_L Cleavage and polyadenyl 99.8 1.5E-20 5.2E-25 143.2 6.5 82 102-183 2-85 (90)
38 2dgp_A Bruno-like 4, RNA bindi 99.8 1.2E-19 4.3E-24 142.3 12.0 88 96-183 8-98 (106)
39 2cph_A RNA binding motif prote 99.8 1.3E-19 4.4E-24 142.4 12.0 88 96-183 10-99 (107)
40 2e5h_A Zinc finger CCHC-type a 99.8 1.3E-19 4.5E-24 138.9 11.6 83 97-179 12-94 (94)
41 2la6_A RNA-binding protein FUS 99.8 1.1E-19 3.8E-24 140.9 11.2 84 96-179 8-99 (99)
42 2d9p_A Polyadenylate-binding p 99.8 1.1E-19 3.8E-24 141.9 11.3 88 95-184 9-96 (103)
43 2cpe_A RNA-binding protein EWS 99.8 1.9E-19 6.3E-24 143.0 12.6 87 97-183 11-105 (113)
44 1wi8_A EIF-4B, eukaryotic tran 99.8 1.5E-19 5.2E-24 141.4 11.7 85 97-183 11-96 (104)
45 1p27_B RNA-binding protein 8A; 99.8 9.9E-20 3.4E-24 142.9 10.2 85 98-182 20-104 (106)
46 2cq3_A RNA-binding protein 9; 99.8 5.2E-19 1.8E-23 138.0 14.0 88 97-186 11-98 (103)
47 1fxl_A Paraneoplastic encephal 99.8 7.2E-22 2.5E-26 167.0 -2.7 147 7-178 17-167 (167)
48 2div_A TRNA selenocysteine ass 99.8 1.9E-19 6.6E-24 139.4 11.2 84 98-181 6-94 (99)
49 1oo0_B CG8781-PA, drosophila Y 99.8 2.1E-19 7.1E-24 142.0 11.2 85 98-182 23-107 (110)
50 2do0_A HnRNP M, heterogeneous 99.8 9.8E-19 3.4E-23 139.0 14.9 85 97-182 11-95 (114)
51 2dnh_A Bruno-like 5, RNA bindi 99.8 3.4E-19 1.2E-23 139.5 11.7 86 97-183 11-99 (105)
52 2jrs_A RNA-binding protein 39; 99.8 1.7E-19 5.8E-24 142.2 9.9 85 97-181 22-106 (108)
53 3ns6_A Eukaryotic translation 99.8 3.3E-20 1.1E-24 144.3 5.7 82 100-181 5-93 (100)
54 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.2E-18 4.1E-23 135.9 14.7 85 97-183 11-95 (103)
55 3ulh_A THO complex subunit 4; 99.8 4.4E-19 1.5E-23 139.4 11.8 81 98-179 26-106 (107)
56 3s7r_A Heterogeneous nuclear r 99.8 3.9E-19 1.3E-23 134.3 11.1 80 98-178 8-87 (87)
57 2dhg_A TRNA selenocysteine ass 99.8 2.6E-19 8.9E-24 140.0 10.4 84 99-183 7-92 (104)
58 4a8x_A RNA-binding protein wit 99.8 2.7E-19 9.1E-24 135.4 10.1 82 100-181 3-85 (88)
59 2dh8_A DAZ-associated protein 99.8 3E-19 1E-23 139.9 10.7 87 96-183 11-97 (105)
60 4f25_A Polyadenylate-binding p 99.8 3.3E-19 1.1E-23 142.1 10.8 80 101-182 5-84 (115)
61 2cpi_A CCR4-NOT transcription 99.8 2.9E-19 1E-23 141.5 10.4 89 95-183 9-103 (111)
62 2cqp_A RNA-binding protein 12; 99.8 3.2E-19 1.1E-23 137.9 10.2 85 97-181 11-95 (98)
63 2dgu_A Heterogeneous nuclear r 99.8 1.7E-18 5.8E-23 135.2 14.4 78 99-184 9-86 (103)
64 1x4a_A Splicing factor, argini 99.8 1.3E-18 4.3E-23 137.3 13.7 84 96-182 17-100 (109)
65 2dgx_A KIAA0430 protein; RRM d 99.8 8.4E-19 2.9E-23 135.1 12.4 81 100-183 8-92 (96)
66 3n9u_C Cleavage and polyadenyl 99.8 3.6E-19 1.2E-23 149.6 11.1 82 100-181 54-137 (156)
67 3ucg_A Polyadenylate-binding p 99.8 4.8E-19 1.6E-23 134.3 10.8 80 101-181 6-85 (89)
68 1x4c_A Splicing factor, argini 99.8 1.6E-18 5.6E-23 136.5 14.1 78 99-183 13-95 (108)
69 2cqg_A TDP-43, TAR DNA-binding 99.8 1.6E-18 5.4E-23 135.3 13.9 86 96-183 10-95 (103)
70 2g4b_A Splicing factor U2AF 65 99.8 9.7E-21 3.3E-25 161.2 1.2 147 7-178 19-171 (172)
71 1x4b_A Heterogeneous nuclear r 99.8 2.7E-19 9.1E-24 142.8 9.4 82 101-183 27-108 (116)
72 2khc_A Testis-specific RNP-typ 99.8 3.4E-19 1.2E-23 142.6 9.9 82 98-179 37-118 (118)
73 2ywk_A Putative RNA-binding pr 99.8 5E-19 1.7E-23 136.0 10.4 82 98-180 13-94 (95)
74 2kxn_B Transformer-2 protein h 99.8 2.6E-19 8.8E-24 145.7 9.1 87 96-182 41-127 (129)
75 1sjq_A Polypyrimidine tract-bi 99.8 6E-19 2E-23 137.3 10.7 81 98-184 13-95 (105)
76 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.3E-19 2.5E-23 149.3 11.9 86 98-183 69-154 (165)
77 2cq4_A RNA binding motif prote 99.8 1.9E-19 6.4E-24 143.3 7.5 81 101-182 25-105 (114)
78 2m2b_A RNA-binding protein 10; 99.8 2.4E-19 8.4E-24 146.3 8.1 86 97-183 19-110 (131)
79 1s79_A Lupus LA protein; RRM, 99.8 2.4E-19 8E-24 140.1 7.4 80 99-180 9-88 (103)
80 2rs2_A Musashi-1, RNA-binding 99.8 7.7E-19 2.6E-23 138.7 10.4 85 97-182 21-105 (109)
81 2ek1_A RNA-binding protein 12; 99.8 3.2E-19 1.1E-23 137.0 8.0 80 100-179 14-93 (95)
82 2a3j_A U1 small nuclear ribonu 99.8 7.2E-19 2.5E-23 142.4 10.3 82 98-182 26-111 (127)
83 2cpy_A RNA-binding protein 12; 99.8 2.9E-19 9.8E-24 142.3 7.5 83 98-182 12-95 (114)
84 2dgw_A Probable RNA-binding pr 99.8 2.6E-18 9E-23 130.9 12.4 81 99-182 8-88 (91)
85 2yh0_A Splicing factor U2AF 65 99.8 1.3E-20 4.6E-25 164.0 -0.7 172 7-182 19-195 (198)
86 2dgv_A HnRNP M, heterogeneous 99.8 1.1E-18 3.7E-23 133.2 10.1 82 99-182 6-87 (92)
87 2fc8_A NCL protein; structure 99.8 2.2E-18 7.7E-23 134.1 11.9 86 95-183 9-94 (102)
88 2wbr_A GW182, gawky, LD47780P; 99.8 1.7E-18 5.8E-23 129.0 10.6 74 100-179 6-79 (89)
89 1p1t_A Cleavage stimulation fa 99.8 5.8E-19 2E-23 137.9 8.6 82 101-182 8-89 (104)
90 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.6E-19 5.4E-24 140.4 5.3 85 95-181 13-98 (100)
91 2cq1_A PTB-like protein L; RRM 99.8 3.4E-18 1.2E-22 132.8 12.7 84 96-185 10-95 (101)
92 2mss_A Protein (musashi1); RNA 99.8 3.6E-19 1.2E-23 130.6 6.8 75 103-178 1-75 (75)
93 2dis_A Unnamed protein product 99.8 2.1E-18 7.2E-23 135.9 11.5 85 99-183 6-94 (109)
94 2cpx_A Hypothetical protein FL 99.8 4.4E-19 1.5E-23 141.2 7.7 87 98-184 22-108 (115)
95 2kn4_A Immunoglobulin G-bindin 99.8 2.8E-18 9.7E-23 144.4 12.8 85 98-182 67-151 (158)
96 2err_A Ataxin-2-binding protei 99.8 1.8E-18 6E-23 136.6 10.7 85 95-181 23-107 (109)
97 3nmr_A Cugbp ELAV-like family 99.8 8.8E-21 3E-25 161.7 -2.8 151 7-179 18-175 (175)
98 2kt5_A RNA and export factor-b 99.8 3.6E-18 1.2E-22 137.9 12.8 85 98-183 32-116 (124)
99 2jwn_A Embryonic polyadenylate 99.8 2E-18 7E-23 139.3 11.2 80 101-181 36-115 (124)
100 1x4e_A RNA binding motif, sing 99.8 1.6E-19 5.5E-24 135.8 4.3 81 99-179 3-83 (85)
101 3q2s_C Cleavage and polyadenyl 99.8 3E-19 1E-23 159.6 6.1 82 100-181 67-150 (229)
102 1x4d_A Matrin 3; structural ge 99.8 1.8E-18 6.2E-23 134.4 9.7 79 97-181 11-92 (102)
103 2fc9_A NCL protein; structure 99.8 3.3E-18 1.1E-22 133.0 11.2 83 97-183 11-93 (101)
104 1wez_A HnRNP H', FTP-3, hetero 99.8 1.3E-18 4.6E-23 135.6 8.9 82 98-182 12-93 (102)
105 1fje_B Nucleolin RBD12, protei 99.8 5E-21 1.7E-25 163.6 -5.5 145 8-181 29-174 (175)
106 2nlw_A Eukaryotic translation 99.8 1.3E-18 4.3E-23 136.4 8.5 82 97-180 11-99 (105)
107 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.5E-18 1.2E-22 140.7 11.5 81 98-178 60-140 (140)
108 3r27_A HnRNP L, heterogeneous 99.8 3.3E-18 1.1E-22 131.8 10.4 79 97-181 17-97 (100)
109 2ki2_A SS-DNA binding protein 99.8 3.2E-19 1.1E-23 135.7 4.7 81 102-183 2-82 (90)
110 2ad9_A Polypyrimidine tract-bi 99.8 3.8E-18 1.3E-22 136.1 11.1 83 96-184 26-110 (119)
111 1uaw_A Mouse-musashi-1; RNP-ty 99.8 5.9E-19 2E-23 130.0 6.0 76 102-178 1-76 (77)
112 2dnq_A RNA-binding protein 4B; 99.8 3.8E-18 1.3E-22 129.8 10.5 77 99-183 6-82 (90)
113 2jvr_A Nucleolar protein 3; RN 99.8 3.8E-18 1.3E-22 134.8 10.8 78 100-181 27-105 (111)
114 2lea_A Serine/arginine-rich sp 99.8 9.2E-19 3.1E-23 143.6 7.5 87 97-183 43-129 (135)
115 3smz_A Protein raver-1, ribonu 99.8 4E-20 1.4E-24 170.5 -0.8 153 7-182 110-265 (284)
116 1why_A Hypothetical protein ri 99.8 5.6E-18 1.9E-22 130.7 11.1 80 97-182 13-94 (97)
117 2ghp_A U4/U6 snRNA-associated 99.8 2.4E-20 8.1E-25 172.7 -3.0 152 7-181 132-291 (292)
118 1x4g_A Nucleolysin TIAR; struc 99.8 9.1E-18 3.1E-22 132.4 12.4 78 100-183 24-101 (109)
119 1x5o_A RNA binding motif, sing 99.8 3.7E-18 1.3E-22 135.7 10.1 82 98-180 22-111 (114)
120 1wg5_A Heterogeneous nuclear r 99.8 3.9E-18 1.3E-22 133.4 10.0 83 99-183 13-96 (104)
121 2lcw_A RNA-binding protein FUS 99.6 7.6E-20 2.6E-24 146.1 0.0 85 99-183 5-97 (116)
122 2cpd_A Apobec-1 stimulating pr 99.7 2E-17 6.7E-22 128.1 13.6 78 98-183 12-91 (99)
123 2dgt_A RNA-binding protein 30; 99.7 1.9E-17 6.4E-22 126.4 13.1 78 98-183 7-84 (92)
124 2db1_A Heterogeneous nuclear r 99.7 4.4E-18 1.5E-22 136.3 9.8 81 99-181 15-98 (118)
125 1fj7_A Nucleolin RBD1, protein 99.7 8.3E-19 2.8E-23 136.4 5.2 82 99-182 15-96 (101)
126 2cqh_A IGF-II mRNA-binding pro 99.7 7.5E-18 2.6E-22 128.9 10.4 78 99-183 6-85 (93)
127 2jvo_A Nucleolar protein 3; nu 99.7 7.5E-18 2.6E-22 132.7 10.5 79 96-182 26-104 (108)
128 1iqt_A AUF1, heterogeneous nuc 99.7 1.6E-18 5.6E-23 127.0 6.1 75 103-178 1-75 (75)
129 2e5j_A Methenyltetrahydrofolat 99.7 7.4E-18 2.5E-22 130.0 10.1 81 97-182 15-95 (97)
130 2xnq_A Nuclear polyadenylated 99.7 1.2E-17 4E-22 129.0 11.2 79 95-181 16-95 (97)
131 1wel_A RNA-binding protein 12; 99.7 1.2E-18 4.2E-23 140.8 5.8 82 99-181 23-104 (124)
132 1wex_A Hypothetical protein (r 99.7 1E-17 3.5E-22 130.8 10.7 80 98-183 12-93 (104)
133 1nu4_A U1A RNA binding domain; 99.7 4E-18 1.4E-22 131.4 8.2 82 98-182 5-90 (97)
134 2kvi_A Nuclear polyadenylated 99.7 3.7E-18 1.3E-22 131.5 7.8 77 99-183 8-85 (96)
135 2hvz_A Splicing factor, argini 99.7 7.8E-18 2.7E-22 130.8 9.5 76 102-182 1-76 (101)
136 2dnp_A RNA-binding protein 14; 99.7 2.6E-17 8.9E-22 125.1 12.2 76 99-182 7-82 (90)
137 2ytc_A PRE-mRNA-splicing facto 99.7 1.7E-17 5.9E-22 124.5 10.9 75 99-179 10-85 (85)
138 2dnn_A RNA-binding protein 12; 99.7 7.4E-18 2.5E-22 132.8 9.2 78 101-181 16-93 (109)
139 2cpj_A Non-POU domain-containi 99.7 1.6E-17 5.4E-22 128.6 10.8 81 97-183 11-91 (99)
140 2hgl_A HNRPF protein, heteroge 99.7 4.8E-18 1.6E-22 139.1 8.3 81 99-181 42-125 (136)
141 3pgw_A U1-A; protein-RNA compl 99.7 4.2E-19 1.4E-23 163.5 2.2 76 99-179 205-281 (282)
142 2krb_A Eukaryotic translation 99.7 2.1E-18 7.3E-23 128.5 5.5 72 102-175 2-80 (81)
143 2hgn_A Heterogeneous nuclear r 99.7 1.1E-18 3.7E-23 143.5 4.2 82 99-183 44-125 (139)
144 2la4_A Nuclear and cytoplasmic 99.7 1.1E-17 3.9E-22 129.9 9.7 75 100-180 26-100 (101)
145 1wf1_A RNA-binding protein RAL 99.7 2.9E-17 9.9E-22 129.7 12.1 75 99-181 25-100 (110)
146 2f3j_A RNA and export factor b 99.7 1.2E-17 4.3E-22 143.2 10.6 84 98-182 85-168 (177)
147 3beg_B Splicing factor, argini 99.7 5.7E-18 2E-22 134.9 7.8 74 100-180 15-93 (115)
148 1x4f_A Matrin 3; structural ge 99.7 8.3E-18 2.8E-22 132.6 8.5 82 97-184 21-105 (112)
149 2e5g_A U6 snRNA-specific termi 99.7 2.5E-17 8.6E-22 126.2 10.7 78 100-183 7-84 (94)
150 3lqv_A PRE-mRNA branch site pr 99.7 1.5E-17 5.2E-22 132.3 9.7 81 99-182 6-86 (115)
151 4f02_A Polyadenylate-binding p 99.7 2.1E-17 7.3E-22 146.0 11.7 83 98-180 12-94 (213)
152 1fjc_A Nucleolin RBD2, protein 99.7 9.2E-18 3.1E-22 129.1 8.0 80 98-182 13-92 (96)
153 2lmi_A GRSF-1, G-rich sequence 99.7 3.8E-18 1.3E-22 134.2 5.8 82 98-181 8-92 (107)
154 3egn_A RNA-binding protein 40; 99.7 4.5E-18 1.5E-22 140.9 6.6 85 98-182 42-131 (143)
155 2j8a_A Histone-lysine N-methyl 99.7 1.4E-17 4.6E-22 132.4 8.9 78 102-179 3-94 (136)
156 1x5p_A Negative elongation fac 99.7 1.1E-16 3.7E-21 123.4 12.9 78 98-183 12-89 (97)
157 2dha_A FLJ20171 protein; RRM d 99.7 1.9E-17 6.5E-22 133.2 8.0 80 100-181 22-105 (123)
158 2cq2_A Hypothetical protein LO 99.7 4.9E-17 1.7E-21 128.3 9.9 81 96-182 20-107 (114)
159 2xs2_A Deleted in azoospermia- 99.7 1.4E-17 4.6E-22 129.7 6.6 80 100-182 8-87 (102)
160 2i2y_A Fusion protein consists 99.7 5.2E-17 1.8E-21 135.5 9.9 80 97-181 69-148 (150)
161 1whx_A Hypothetical protein ri 99.7 4.5E-17 1.5E-21 128.9 8.8 76 101-182 10-85 (111)
162 2e44_A Insulin-like growth fac 99.7 6.8E-17 2.3E-21 124.2 9.3 79 99-181 13-92 (96)
163 3tyt_A Heterogeneous nuclear r 99.7 2E-18 6.9E-23 151.7 0.5 78 99-178 121-204 (205)
164 3smz_A Protein raver-1, ribonu 99.7 3.2E-17 1.1E-21 151.0 8.5 138 7-182 37-176 (284)
165 1fxl_A Paraneoplastic encephal 99.7 1.4E-16 4.9E-21 134.2 11.8 81 101-181 2-82 (167)
166 2ghp_A U4/U6 snRNA-associated 99.7 1.6E-18 5.5E-23 160.3 -0.3 141 7-182 56-198 (292)
167 1b7f_A Protein (SXL-lethal pro 99.7 1.1E-16 3.6E-21 135.4 10.5 83 100-182 2-84 (168)
168 1wg1_A KIAA1579 protein, homol 99.7 1.2E-16 4.2E-21 120.8 9.3 76 100-182 4-79 (88)
169 1qm9_A Polypyrimidine tract-bi 99.7 5.5E-18 1.9E-22 147.7 1.7 78 99-181 118-197 (198)
170 2diu_A KIAA0430 protein; struc 99.7 1.8E-16 6.1E-21 119.2 9.6 75 99-183 6-86 (96)
171 2hgm_A HNRPF protein, heteroge 99.7 3.8E-17 1.3E-21 131.8 6.3 80 99-181 40-121 (126)
172 2dnl_A Cytoplasmic polyadenyla 99.7 2.8E-16 9.4E-21 124.9 10.4 78 99-179 6-86 (114)
173 3sde_A Paraspeckle component 1 99.7 6.9E-17 2.4E-21 147.2 7.5 140 7-182 37-180 (261)
174 3zzy_A Polypyrimidine tract-bi 99.7 3.9E-16 1.3E-20 126.0 10.5 77 101-182 28-107 (130)
175 3d2w_A TAR DNA-binding protein 99.7 2.7E-16 9.1E-21 119.3 9.1 75 99-182 9-85 (89)
176 1sjr_A Polypyrimidine tract-bi 99.7 3E-16 1E-20 131.4 10.1 78 101-182 46-125 (164)
177 1l3k_A Heterogeneous nuclear r 99.7 4.3E-16 1.5E-20 135.0 10.8 82 99-181 11-92 (196)
178 2pe8_A Splicing factor 45; RRM 99.7 7.4E-16 2.5E-20 120.5 10.9 82 99-180 6-93 (105)
179 1wf0_A TDP-43, TAR DNA-binding 99.6 2.1E-16 7.1E-21 119.5 7.4 78 99-183 3-80 (88)
180 2adc_A Polypyrimidine tract-bi 99.6 9.6E-18 3.3E-22 149.9 -0.1 78 99-181 149-228 (229)
181 2hzc_A Splicing factor U2AF 65 99.6 5.6E-16 1.9E-20 116.7 9.2 71 100-177 5-86 (87)
182 2e5i_A Heterogeneous nuclear r 99.6 5.9E-16 2E-20 124.3 9.5 74 103-182 27-103 (124)
183 3tyt_A Heterogeneous nuclear r 99.6 6.7E-16 2.3E-20 135.6 10.4 79 99-182 2-81 (205)
184 2bz2_A Negative elongation fac 99.6 6.7E-16 2.3E-20 124.0 9.1 77 99-183 37-113 (121)
185 3md3_A Nuclear and cytoplasmic 99.6 1.6E-15 5.3E-20 127.6 10.8 80 102-182 1-80 (166)
186 2qfj_A FBP-interacting repress 99.6 9.3E-16 3.2E-20 135.0 9.3 80 101-180 28-107 (216)
187 2voo_A Lupus LA protein; RNA-b 99.6 3E-15 1E-19 130.1 10.2 78 101-180 109-186 (193)
188 3nmr_A Cugbp ELAV-like family 99.6 2.9E-15 9.9E-20 127.2 9.4 82 100-181 2-88 (175)
189 2cjk_A Nuclear polyadenylated 99.6 1.7E-15 5.8E-20 127.8 7.8 79 100-180 2-80 (167)
190 3pgw_A U1-A; protein-RNA compl 99.6 6.1E-15 2.1E-19 135.5 11.5 82 98-182 6-91 (282)
191 3u1l_A PRE-mRNA-splicing facto 99.6 2.4E-15 8.1E-20 134.1 7.7 79 99-183 132-231 (240)
192 2dit_A HIV TAT specific factor 99.6 2.3E-14 7.7E-19 113.4 12.1 83 97-183 11-104 (112)
193 2adc_A Polypyrimidine tract-bi 99.6 5.9E-15 2E-19 131.7 8.9 80 97-181 30-110 (229)
194 3v4m_A Splicing factor U2AF 65 99.5 2E-14 6.9E-19 112.3 9.2 82 99-180 3-96 (105)
195 1fje_B Nucleolin RBD12, protei 99.5 5.6E-15 1.9E-19 125.8 6.1 83 97-181 9-91 (175)
196 1qm9_A Polypyrimidine tract-bi 99.5 1.7E-14 5.7E-19 125.5 7.2 77 101-182 3-80 (198)
197 1jmt_A Splicing factor U2AF 35 99.5 8.1E-15 2.8E-19 114.4 4.6 73 105-178 19-103 (104)
198 3ue2_A Poly(U)-binding-splicin 99.5 4.4E-14 1.5E-18 112.5 9.0 81 100-180 19-108 (118)
199 3sde_A Paraspeckle component 1 99.5 8.3E-14 2.8E-18 126.7 11.3 77 98-180 19-95 (261)
200 2g4b_A Splicing factor U2AF 65 99.4 3E-13 1E-17 114.5 10.0 75 100-181 3-88 (172)
201 2d9o_A DNAJ (HSP40) homolog, s 99.4 8.5E-13 2.9E-17 101.9 10.7 76 101-183 10-92 (100)
202 2yh0_A Splicing factor U2AF 65 99.4 3.8E-13 1.3E-17 116.6 9.6 75 100-181 3-88 (198)
203 3tht_A Alkylated DNA repair pr 99.4 4E-13 1.4E-17 126.0 9.9 80 94-179 11-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 2.5E-12 8.5E-17 101.7 10.9 78 99-180 5-92 (114)
205 3pgw_S U1-70K; protein-RNA com 99.2 4.1E-11 1.4E-15 116.7 11.3 24 145-168 149-174 (437)
206 2dnr_A Synaptojanin-1; RRM dom 99.2 3.9E-11 1.3E-15 89.4 8.3 74 98-180 4-85 (91)
207 1owx_A Lupus LA protein, SS-B, 99.2 3.3E-11 1.1E-15 95.5 7.2 79 96-180 13-95 (121)
208 1ufw_A Synaptojanin 2; RNP dom 99.1 4.2E-10 1.4E-14 84.1 8.6 74 97-179 11-93 (95)
209 3dxb_A Thioredoxin N-terminall 98.9 2.8E-09 9.5E-14 94.2 7.3 79 102-180 125-212 (222)
210 2l9w_A U4/U6 snRNA-associated- 98.6 6E-07 2E-11 68.4 11.1 71 101-177 21-96 (117)
211 1wey_A Calcipressin 1; structu 97.9 4.3E-05 1.5E-09 58.0 7.5 76 100-181 4-84 (104)
212 2dhx_A Poly (ADP-ribose) polym 97.5 0.0013 4.4E-08 49.7 11.1 72 100-180 7-83 (104)
213 1uw4_A UPF3X; nonsense mediate 97.5 0.00024 8.2E-09 52.9 7.1 78 102-179 2-86 (91)
214 1whv_A Poly(A)-specific ribonu 97.5 0.0004 1.4E-08 51.8 7.9 55 101-164 16-70 (100)
215 1wwh_A Nucleoporin 35, nucleop 97.2 0.0017 5.8E-08 50.6 8.6 70 101-178 24-94 (119)
216 3ctr_A Poly(A)-specific ribonu 97.2 0.00037 1.3E-08 52.2 4.2 53 103-164 8-60 (101)
217 4f25_A Polyadenylate-binding p 97.1 2.1E-07 7.2E-12 73.3 -14.8 92 7-117 20-113 (115)
218 2l08_A Regulator of nonsense t 96.8 0.0017 5.8E-08 48.7 5.2 78 101-178 9-93 (97)
219 3p3d_A Nucleoporin 53; structu 96.4 0.0052 1.8E-07 48.5 5.8 77 102-180 8-98 (132)
220 3pq1_A Poly(A) RNA polymerase; 95.9 0.0049 1.7E-07 59.6 3.9 55 102-162 54-108 (464)
221 2lkz_A RNA-binding protein 5; 95.7 0.0034 1.2E-07 47.1 1.7 39 7-46 24-63 (95)
222 2lcw_A RNA-binding protein FUS 94.5 0.0024 8.3E-08 49.5 0.0 62 6-69 21-92 (116)
223 2kn4_A Immunoglobulin G-bindin 95.4 0.012 4.3E-07 48.0 4.1 35 130-166 2-36 (158)
224 2i2y_A Fusion protein consists 95.1 0.0071 2.4E-07 49.1 1.9 42 139-181 9-51 (150)
225 2j8a_A Histone-lysine N-methyl 94.9 0.0016 5.6E-08 51.6 -2.5 37 7-45 21-57 (136)
226 1wel_A RNA-binding protein 12; 94.8 0.00048 1.7E-08 54.4 -5.9 58 7-66 40-98 (124)
227 2lxi_A RNA-binding protein 10; 94.7 0.0056 1.9E-07 45.4 0.0 38 7-46 16-54 (91)
228 2mss_A Protein (musashi1); RNA 94.6 0.0027 9.2E-08 44.9 -1.8 38 7-46 14-51 (75)
229 1s79_A Lupus LA protein; RRM, 94.6 0.00038 1.3E-08 53.3 -6.9 58 7-67 26-84 (103)
230 3ns6_A Eukaryotic translation 94.3 0.0031 1.1E-07 47.6 -2.2 37 8-46 28-64 (100)
231 2m2b_A RNA-binding protein 10; 94.0 0.011 3.8E-07 46.9 0.4 39 6-46 37-77 (131)
232 3lqv_A PRE-mRNA branch site pr 94.0 0.00011 3.7E-09 57.3 -11.4 35 7-46 23-57 (115)
233 1uaw_A Mouse-musashi-1; RNP-ty 93.9 0.015 5.1E-07 41.1 1.0 40 6-47 14-53 (77)
234 1iqt_A AUF1, heterogeneous nuc 93.8 0.0039 1.3E-07 44.1 -2.4 39 7-47 14-52 (75)
235 3s8s_A Histone-lysine N-methyl 93.5 0.0046 1.6E-07 47.7 -2.7 39 7-47 21-59 (110)
236 3n9u_C Cleavage and polyadenyl 93.0 0.00025 8.5E-09 58.7 -11.4 58 7-66 70-131 (156)
237 2rs2_A Musashi-1, RNA-binding 92.8 0.017 5.7E-07 44.2 -0.4 38 7-46 40-77 (109)
238 3q2s_C Cleavage and polyadenyl 92.8 0.00095 3.2E-08 58.8 -8.6 59 7-67 83-145 (229)
239 2cqb_A Peptidyl-prolyl CIS-tra 92.6 0.037 1.3E-06 41.4 1.4 39 6-46 26-64 (102)
240 1x5t_A Splicing factor 3B subu 92.6 0.029 9.8E-07 41.5 0.6 39 7-46 20-58 (96)
241 1x4e_A RNA binding motif, sing 92.5 0.021 7E-07 41.3 -0.2 38 7-46 20-57 (85)
242 2lmi_A GRSF-1, G-rich sequence 92.4 0.0035 1.2E-07 47.9 -4.8 58 6-66 25-86 (107)
243 2krb_A Eukaryotic translation 92.4 0.0056 1.9E-07 44.1 -3.4 37 7-47 22-58 (81)
244 2cpy_A RNA-binding protein 12; 92.3 0.045 1.6E-06 42.1 1.5 38 7-47 30-68 (114)
245 2dnm_A SRP46 splicing factor; 92.2 0.028 9.6E-07 42.2 0.2 39 7-47 28-66 (103)
246 3p5t_L Cleavage and polyadenyl 92.1 0.013 4.5E-07 43.0 -1.7 38 7-46 16-55 (90)
247 1x4b_A Heterogeneous nuclear r 92.1 0.028 9.6E-07 43.3 0.0 38 7-46 42-79 (116)
248 2cq4_A RNA binding motif prote 91.9 0.027 9.1E-07 43.3 -0.3 39 7-47 40-78 (114)
249 2lea_A Serine/arginine-rich sp 91.9 0.02 6.7E-07 45.8 -1.1 39 7-47 62-100 (135)
250 2dgs_A DAZ-associated protein 91.7 0.024 8.2E-07 42.3 -0.7 38 7-46 25-62 (99)
251 4fxv_A ELAV-like protein 1; RN 91.7 0.0082 2.8E-07 45.3 -3.4 38 7-46 34-71 (99)
252 1x4h_A RNA-binding protein 28; 91.6 0.022 7.6E-07 43.4 -1.0 38 7-46 30-67 (111)
253 3s7r_A Heterogeneous nuclear r 91.4 0.013 4.3E-07 42.7 -2.6 38 7-46 26-63 (87)
254 1wez_A HnRNP H', FTP-3, hetero 91.2 0.0089 3.1E-07 45.3 -3.7 38 6-47 29-66 (102)
255 2dnl_A Cytoplasmic polyadenyla 91.2 0.08 2.7E-06 40.6 1.8 37 7-46 23-62 (114)
256 3d45_A Poly(A)-specific ribonu 91.0 0.66 2.3E-05 45.4 8.5 56 101-165 440-495 (507)
257 2dgp_A Bruno-like 4, RNA bindi 90.8 0.027 9.2E-07 42.5 -1.2 38 7-46 28-65 (106)
258 1whw_A Hypothetical protein ri 90.8 0.033 1.1E-06 41.5 -0.8 38 7-46 23-60 (99)
259 2cqp_A RNA-binding protein 12; 90.7 0.043 1.5E-06 40.7 -0.2 38 7-46 30-67 (98)
260 2e5h_A Zinc finger CCHC-type a 90.6 0.048 1.6E-06 40.1 0.0 38 7-46 31-68 (94)
261 2ki2_A SS-DNA binding protein 90.6 0.022 7.6E-07 41.6 -1.9 39 6-46 15-53 (90)
262 1x5u_A Splicing factor 3B subu 90.6 0.036 1.2E-06 41.7 -0.7 38 7-46 30-67 (105)
263 2x1f_A MRNA 3'-END-processing 90.2 0.036 1.2E-06 41.0 -1.0 38 7-46 17-54 (96)
264 2ek1_A RNA-binding protein 12; 90.1 0.048 1.7E-06 40.1 -0.4 38 7-46 30-67 (95)
265 3ex7_B RNA-binding protein 8A; 90.0 0.045 1.5E-06 42.8 -0.7 38 7-46 37-74 (126)
266 2div_A TRNA selenocysteine ass 89.9 0.006 2.1E-07 45.6 -5.6 38 7-46 24-62 (99)
267 2dnz_A Probable RNA-binding pr 89.9 0.039 1.3E-06 40.6 -1.0 39 6-46 19-57 (95)
268 2khc_A Testis-specific RNP-typ 89.9 0.046 1.6E-06 42.1 -0.7 39 7-47 55-93 (118)
269 2hgn_A Heterogeneous nuclear r 89.8 0.037 1.3E-06 44.5 -1.3 37 7-47 61-97 (139)
270 2cpe_A RNA-binding protein EWS 89.7 0.096 3.3E-06 39.9 1.1 38 7-46 30-75 (113)
271 2fy1_A RNA-binding motif prote 89.6 0.013 4.6E-07 45.4 -4.0 39 6-47 21-59 (116)
272 3md1_A Nuclear and cytoplasmic 89.6 0.021 7.1E-07 40.9 -2.7 38 7-46 16-53 (83)
273 1wg5_A Heterogeneous nuclear r 89.5 0.045 1.5E-06 41.3 -1.0 37 7-46 30-67 (104)
274 1oo0_B CG8781-PA, drosophila Y 89.5 0.042 1.4E-06 41.8 -1.2 38 7-46 41-78 (110)
275 1wi8_A EIF-4B, eukaryotic tran 89.5 0.075 2.5E-06 39.9 0.3 37 7-46 30-67 (104)
276 2kxn_B Transformer-2 protein h 89.4 0.045 1.5E-06 43.3 -1.1 38 7-46 61-98 (129)
277 2cq0_A Eukaryotic translation 89.4 0.033 1.1E-06 41.8 -1.8 38 7-46 30-67 (103)
278 2dh8_A DAZ-associated protein 89.2 0.02 6.8E-07 43.3 -3.2 39 7-47 31-69 (105)
279 2cqg_A TDP-43, TAR DNA-binding 89.0 0.018 6E-07 43.4 -3.6 38 7-46 30-67 (103)
280 2cqd_A RNA-binding region cont 88.8 0.047 1.6E-06 42.0 -1.3 38 7-46 32-69 (116)
281 2hgm_A HNRPF protein, heteroge 88.7 0.034 1.2E-06 43.9 -2.2 37 7-47 57-95 (126)
282 1x5s_A Cold-inducible RNA-bind 88.6 0.042 1.4E-06 41.1 -1.7 38 7-46 27-64 (102)
283 2cph_A RNA binding motif prote 88.6 0.061 2.1E-06 40.5 -0.8 38 7-46 30-68 (107)
284 3mdf_A Peptidyl-prolyl CIS-tra 88.6 0.029 9.8E-07 40.4 -2.6 38 7-46 22-59 (85)
285 3ucg_A Polyadenylate-binding p 88.4 0.03 1E-06 40.7 -2.6 39 7-47 21-59 (89)
286 2j76_E EIF-4B, EIF4B, eukaryot 88.3 0.11 3.8E-06 38.7 0.5 37 7-46 34-71 (100)
287 2ku7_A MLL1 PHD3-CYP33 RRM chi 87.7 0.068 2.3E-06 42.3 -1.1 38 7-46 78-115 (140)
288 2cpz_A CUG triplet repeat RNA- 87.5 0.038 1.3E-06 42.4 -2.6 38 7-46 40-77 (115)
289 2la6_A RNA-binding protein FUS 87.5 0.053 1.8E-06 40.4 -1.8 38 7-46 28-73 (99)
290 2dnn_A RNA-binding protein 12; 87.3 0.15 5.1E-06 39.0 0.7 36 7-46 31-66 (109)
291 2nlw_A Eukaryotic translation 87.0 0.069 2.4E-06 40.3 -1.4 37 7-47 36-72 (105)
292 1p27_B RNA-binding protein 8A; 86.6 0.031 1.1E-06 42.2 -3.5 38 7-46 38-75 (106)
293 1p1t_A Cleavage stimulation fa 86.6 0.036 1.2E-06 41.6 -3.2 38 7-46 23-60 (104)
294 2cqc_A Arginine/serine-rich sp 86.1 0.036 1.2E-06 40.8 -3.4 38 7-46 30-67 (95)
295 2xs2_A Deleted in azoospermia- 86.0 0.036 1.2E-06 41.5 -3.4 39 7-48 24-62 (102)
296 3bs9_A Nucleolysin TIA-1 isofo 85.8 0.034 1.2E-06 40.2 -3.6 38 7-46 21-58 (87)
297 2dis_A Unnamed protein product 85.8 0.065 2.2E-06 40.6 -2.1 40 7-47 23-63 (109)
298 2hgl_A HNRPF protein, heteroge 85.5 0.12 4.1E-06 41.3 -0.8 37 7-46 59-98 (136)
299 1rk8_A CG8781-PA, CG8781-PA pr 85.4 0.043 1.5E-06 45.2 -3.6 38 7-46 87-124 (165)
300 2jrs_A RNA-binding protein 39; 85.4 0.04 1.4E-06 42.0 -3.5 38 7-46 41-78 (108)
301 2jwn_A Embryonic polyadenylate 85.0 0.046 1.6E-06 42.6 -3.4 39 6-46 50-88 (124)
302 2kt5_A RNA and export factor-b 84.9 0.13 4.3E-06 40.0 -0.9 37 7-46 50-86 (124)
303 1x5o_A RNA binding motif, sing 84.7 0.082 2.8E-06 40.4 -2.0 37 7-46 40-76 (114)
304 2g0c_A ATP-dependent RNA helic 84.4 1.8 6.2E-05 30.2 5.3 68 103-179 2-75 (76)
305 2dnh_A Bruno-like 5, RNA bindi 84.2 0.066 2.3E-06 40.2 -2.8 37 7-46 30-66 (105)
306 2dgo_A Cytotoxic granule-assoc 83.9 0.05 1.7E-06 41.7 -3.6 38 7-46 30-67 (115)
307 2do4_A Squamous cell carcinoma 82.9 0.079 2.7E-06 39.4 -2.8 37 7-46 32-68 (100)
308 3d2w_A TAR DNA-binding protein 82.7 0.19 6.4E-06 36.7 -0.7 33 7-46 26-58 (89)
309 2f3j_A RNA and export factor b 82.2 0.19 6.3E-06 42.0 -1.0 37 7-46 103-139 (177)
310 2dng_A Eukaryotic translation 82.0 0.11 3.6E-06 39.0 -2.3 37 7-46 30-66 (103)
311 3ulh_A THO complex subunit 4; 81.9 0.068 2.3E-06 40.3 -3.5 37 7-46 44-80 (107)
312 1h2v_Z 20 kDa nuclear CAP bind 81.1 0.081 2.8E-06 43.0 -3.6 38 7-46 54-91 (156)
313 4a8x_A RNA-binding protein wit 80.6 0.094 3.2E-06 37.8 -3.0 38 7-46 19-57 (88)
314 2pe8_A Splicing factor 45; RRM 80.5 0.11 3.7E-06 39.5 -2.8 40 5-46 26-66 (105)
315 1wf0_A TDP-43, TAR DNA-binding 80.2 0.61 2.1E-05 33.5 1.4 33 7-46 20-52 (88)
316 2dha_A FLJ20171 protein; RRM d 80.1 0.13 4.4E-06 40.3 -2.5 38 7-47 38-79 (123)
317 2dhg_A TRNA selenocysteine ass 80.1 0.065 2.2E-06 40.2 -4.2 37 7-46 24-61 (104)
318 2db1_A Heterogeneous nuclear r 80.0 0.16 5.5E-06 39.2 -2.0 38 7-47 32-72 (118)
319 1fj7_A Nucleolin RBD1, protein 79.6 0.05 1.7E-06 40.6 -4.9 37 7-46 32-68 (101)
320 2a3j_A U1 small nuclear ribonu 79.4 0.032 1.1E-06 44.1 -6.3 33 9-46 50-82 (127)
321 2d9p_A Polyadenylate-binding p 78.4 0.18 6.1E-06 37.6 -2.2 36 7-46 30-65 (103)
322 2d9o_A DNAJ (HSP40) homolog, s 78.0 0.16 5.5E-06 38.2 -2.5 34 6-46 31-64 (100)
323 2cpx_A Hypothetical protein FL 77.9 0.14 4.7E-06 39.1 -3.0 38 7-46 40-77 (115)
324 2fc9_A NCL protein; structure 77.5 0.62 2.1E-05 34.4 0.7 34 7-46 30-63 (101)
325 2cpf_A RNA binding motif prote 77.4 0.064 2.2E-06 39.7 -4.9 38 7-46 20-60 (98)
326 2ywk_A Putative RNA-binding pr 77.3 0.11 3.7E-06 38.2 -3.7 37 7-46 31-67 (95)
327 2err_A Ataxin-2-binding protei 76.6 0.54 1.9E-05 35.5 0.2 36 7-46 44-79 (109)
328 2cpi_A CCR4-NOT transcription 75.9 0.52 1.8E-05 35.7 -0.1 39 6-46 29-73 (111)
329 4eyt_A Telomerase associated p 75.8 19 0.00067 25.9 8.1 70 99-176 10-86 (129)
330 2do0_A HnRNP M, heterogeneous 75.6 0.19 6.4E-06 38.3 -2.8 37 7-46 30-66 (114)
331 1u6f_A Tcubp1, RNA-binding pro 75.3 0.068 2.3E-06 42.5 -5.6 38 7-46 57-94 (139)
332 2dgw_A Probable RNA-binding pr 74.1 0.3 1E-05 35.4 -1.9 36 7-46 25-60 (91)
333 2cq3_A RNA-binding protein 9; 71.8 0.42 1.4E-05 35.5 -1.6 36 7-46 30-65 (103)
334 1x4f_A Matrin 3; structural ge 70.4 0.85 2.9E-05 34.9 -0.1 33 6-46 40-72 (112)
335 2cqi_A Nucleolysin TIAR; RNA r 66.4 0.33 1.1E-05 36.1 -3.3 36 7-46 30-65 (103)
336 3v4m_A Splicing factor U2AF 65 66.0 0.77 2.6E-05 34.6 -1.2 38 7-46 30-69 (105)
337 2dgv_A HnRNP M, heterogeneous 65.8 0.27 9.3E-06 35.6 -3.7 36 7-46 23-58 (92)
338 1x4a_A Splicing factor, argini 65.7 0.66 2.3E-05 34.8 -1.6 35 7-46 37-71 (109)
339 1jmt_A Splicing factor U2AF 35 65.2 0.38 1.3E-05 36.3 -3.1 37 7-46 41-78 (104)
340 1fjc_A Nucleolin RBD2, protein 64.9 0.35 1.2E-05 35.4 -3.3 33 7-46 31-63 (96)
341 2e5g_A U6 snRNA-specific termi 64.8 0.33 1.1E-05 35.5 -3.5 34 7-47 23-56 (94)
342 3beg_B Splicing factor, argini 63.3 0.15 5E-06 39.3 -5.9 32 6-46 30-61 (115)
343 3egn_A RNA-binding protein 40; 62.7 0.36 1.2E-05 38.4 -3.8 39 7-46 60-102 (143)
344 2bz2_A Negative elongation fac 61.9 1.4 4.9E-05 33.9 -0.3 33 6-46 51-83 (121)
345 2cq1_A PTB-like protein L; RRM 61.1 1.1 3.9E-05 33.4 -1.1 32 7-46 30-61 (101)
346 2voo_A Lupus LA protein; RNA-b 61.0 0.63 2.2E-05 39.3 -2.8 37 7-46 124-160 (193)
347 2ad9_A Polypyrimidine tract-bi 60.9 0.97 3.3E-05 35.0 -1.5 31 7-45 46-76 (119)
348 2jvr_A Nucleolar protein 3; RN 59.3 1.1 3.7E-05 34.2 -1.5 34 7-46 43-77 (111)
349 2dgx_A KIAA0430 protein; RRM d 58.2 0.66 2.3E-05 34.0 -2.8 31 11-46 32-62 (96)
350 2dit_A HIV TAT specific factor 57.6 1.7 5.7E-05 32.9 -0.7 34 7-46 41-74 (112)
351 4e8u_A Putative uncharacterize 45.9 40 0.0014 27.6 5.8 56 103-161 14-81 (172)
352 3s6e_A RNA-binding protein 39; 45.5 4.7 0.00016 30.7 0.2 34 7-46 32-65 (114)
353 3lpe_A Putative transcription 32.8 1E+02 0.0035 22.0 5.8 34 128-166 40-73 (92)
354 3fry_A Probable copper-exporti 30.0 1.2E+02 0.004 19.9 6.1 54 102-162 7-60 (73)
355 3fut_A Dimethyladenosine trans 28.2 43 0.0015 29.5 3.6 31 102-133 111-141 (271)
356 3ts2_A Protein LIN-28 homolog 27.8 5.9 0.0002 31.8 -2.0 28 116-151 2-29 (148)
357 3h7h_B Transcription elongatio 26.1 1.3E+02 0.0044 22.3 5.4 36 127-167 40-75 (106)
358 1i4w_A Mitochondrial replicati 23.2 42 0.0015 30.9 2.7 22 103-124 144-165 (353)
359 3uzu_A Ribosomal RNA small sub 23.1 21 0.00071 31.7 0.5 33 102-134 115-147 (279)
360 3gf6_A Uncharacterized bacteri 22.5 5.2 0.00018 32.1 -3.1 23 1-23 130-152 (224)
361 3tht_A Alkylated DNA repair pr 22.3 11 0.00037 34.8 -1.6 33 6-46 34-66 (345)
362 3ftd_A Dimethyladenosine trans 20.6 58 0.002 28.1 2.9 32 102-133 96-127 (249)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=100.00 E-value=9.1e-47 Score=368.45 Aligned_cols=212 Identities=78% Similarity=1.322 Sum_probs=181.1
Q ss_pred CCCCCChhhhhcCCCCCCCCCCCCCCCCCCCC-CCCCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Q psy16184 1 MTQFLPPNLLALFAPRDPVPYLPPVEKLPHEK-KTHGYSGIAAFLNEFEDPKDTPPPTRVETREERLERRRRERAEQVAY 79 (363)
Q Consensus 1 ~~~~~p~~l~~~f~~~~pi~~~~p~~~~p~t~-~s~g~~g~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (363)
||++|||+|+.||+|.|||++|+|+...|... ...+|+||..|+..++....++....++...+..+.++.++.++.+.
T Consensus 1 mt~~lPp~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~ 80 (437)
T 3pgw_S 1 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQ 80 (437)
T ss_pred CCCcCCccHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988777544 78889899989888887766666666777777666666667777777
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHH
Q psy16184 80 KLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSA 159 (363)
Q Consensus 80 ~~~~~~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~A 159 (363)
++...+..|.|...+.....+.++|||+|||+.||+++|..+|.+||.|..|.|+.++.|++++|||||+|.+.++|.+|
T Consensus 81 ~~~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 160 (437)
T 3pgw_S 81 EVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160 (437)
T ss_pred HHHHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHH
Confidence 77778888888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeCCEEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy16184 160 YKHADGKKIDGRRVLVDVERSRTVKGWLPRRLGGGLGGTRRGGPDVNLKHSGR 212 (363)
Q Consensus 160 i~~l~g~~i~g~~i~V~~a~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~ 212 (363)
|..|||+.|+|+.|.|.|+.+.....|.+...+||.|++.+++...+....++
T Consensus 161 i~~lng~~i~gr~i~V~~a~~~~~~~~~~~~~ggG~gg~~~gg~~~~~~~~gr 213 (437)
T 3pgw_S 161 YKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGR 213 (437)
T ss_pred HHHcCCCEECCEEEEEEEeCCCCCCCCCCCCcCCCCCCCCCCCCccccccccc
Confidence 99999999999999999999999888988777776666555554444333333
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=5.7e-22 Score=153.94 Aligned_cols=82 Identities=21% Similarity=0.437 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy16184 179 RS 180 (363)
Q Consensus 179 ~~ 180 (363)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 3
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.85 E-value=1.7e-23 Score=177.50 Aligned_cols=149 Identities=18% Similarity=0.334 Sum_probs=113.3
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKDTPPPTRVETREERLERRRRERAEQVAYKLEQEIA 86 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (363)
.+|..+|+++|+|..+ -++.++.++.++|| +||.|.+...........+.+.++.+.+...
T Consensus 18 ~~l~~~F~~~G~i~~v-~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~----------------- 78 (167)
T 2cjk_A 18 DNLREYFGKYGTVTDL-KIMKDPATGRSRGF-GFLSFEKPSSVDEVVKTQHILDGKVIDPKRA----------------- 78 (167)
T ss_dssp HHHHHHHTTTCCEEEE-ECCCCTTTSSCCSC-EEEEESSTHHHHHHHHSCCEETTEECCCEEC-----------------
T ss_pred HHHHHHHHhCCCEEEE-EEEECCCCCCccce-EEEEEccHHHHHHHHhcccccCCeEcccccc-----------------
Confidence 4589999999999888 46678889999999 9999976432110000011122211111000
Q ss_pred hcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q psy16184 87 LWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGK 166 (363)
Q Consensus 87 ~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~ 166 (363)
.+.....+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+. ||+.
T Consensus 79 ------~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~ 151 (167)
T 2cjk_A 79 ------IPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFI 151 (167)
T ss_dssp ------CCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEE
T ss_pred ------cchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCE
Confidence 000001125699999999999999999999999999999999998899999999999999999999998 8999
Q ss_pred eeCCEEEEEEeeccc
Q psy16184 167 KIDGRRVLVDVERSR 181 (363)
Q Consensus 167 ~i~g~~i~V~~a~~~ 181 (363)
.|+|+.|.|.+|.++
T Consensus 152 ~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 152 DFKDRKIEIKRAEPR 166 (167)
T ss_dssp CSSSSCEEEEECCCC
T ss_pred EeCCeEEEEeecCCC
Confidence 999999999999764
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=8e-21 Score=150.30 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+||++.+|+++|.++|++||.|..|.|+.++.|+.++|||||+|.+.++|++||..|||..|+|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q psy16184 179 RS 180 (363)
Q Consensus 179 ~~ 180 (363)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.84 E-value=4.7e-23 Score=179.32 Aligned_cols=157 Identities=22% Similarity=0.371 Sum_probs=113.3
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCC-CCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFED-PKDTPPPTRVETREERLERRRRERAEQVAYKLEQEI 85 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (363)
.+|..+|.++|+|..+ .++.++.++.++|| +||.|.+.... .+.......+.++.+.+.......
T Consensus 28 ~~l~~~F~~~G~i~~v-~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~------------ 93 (196)
T 1l3k_A 28 ESLRSHFEQWGTLTDC-VVMRDPNTKRSRGF-GFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRE------------ 93 (196)
T ss_dssp HHHHHHHGGGSCEEEE-EEEECTTTCCEEEE-EEEEESSHHHHHHHHHTCSCEETTEECEEEECCC--------------
T ss_pred HHHHHHHHhCCCEEEE-EEEEcCCCCCccce-EEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcc------------
Confidence 4689999999999887 46678889999999 99999774331 111112223332221111100000
Q ss_pred hhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q psy16184 86 ALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADG 165 (363)
Q Consensus 86 ~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g 165 (363)
.........+.++|||+|||+.+|+++|.++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||.. ++
T Consensus 94 -----~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~ 167 (196)
T 1l3k_A 94 -----DSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KY 167 (196)
T ss_dssp --------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SC
T ss_pred -----cccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CC
Confidence 000011123467999999999999999999999999999999999988999999999999999999999985 89
Q ss_pred ceeCCEEEEEEeecccCC
Q psy16184 166 KKIDGRRVLVDVERSRTV 183 (363)
Q Consensus 166 ~~i~g~~i~V~~a~~~~~ 183 (363)
..|+|+.|.|.++.++..
T Consensus 168 ~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 168 HTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp CEETTEECEEEECC----
T ss_pred cEECCEEEEEEecCChhH
Confidence 999999999999987654
No 6
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-20 Score=154.00 Aligned_cols=89 Identities=26% Similarity=0.487 Sum_probs=82.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
....+.++|||+|||+.+|+++|.++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCC
Q psy16184 176 DVERSRTVK 184 (363)
Q Consensus 176 ~~a~~~~~~ 184 (363)
.++......
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.84 E-value=1.1e-22 Score=179.73 Aligned_cols=163 Identities=20% Similarity=0.355 Sum_probs=115.6
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCC--CCCCCCCCCcccHHHHHHHHHHHH-HHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFED--PKDTPPPTRVETREERLERRRRER-AEQVAYKLEQ 83 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (363)
.+|..+|..+++|..+ -+..++.++.++|| +||.|.+.... +...+....+.++.+.+....... ..........
T Consensus 43 ~~l~~~f~~~G~i~~v-~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~ 120 (216)
T 2qfj_A 43 DTIRQAFAPFGPIKSI-DMSWDSVTMKHKGF-AFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAE 120 (216)
T ss_dssp HHHHHHHGGGSCEEEE-EECCC-CC-CCCSE-EEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEE-EEeecCCCCccCce-EEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhc
Confidence 4689999999999887 45667888999999 99999774331 111112222222111110000000 0000000000
Q ss_pred HHhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHh
Q psy16184 84 EIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163 (363)
Q Consensus 84 ~~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l 163 (363)
.....++|||+|||..+|+++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|
T Consensus 121 -------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 121 -------------EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp -------------HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred -------------ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 0123579999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCceeCCEEEEEEeecccCCC
Q psy16184 164 DGKKIDGRRVLVDVERSRTVK 184 (363)
Q Consensus 164 ~g~~i~g~~i~V~~a~~~~~~ 184 (363)
||..|+|+.|.|.++.+....
T Consensus 188 ~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp TTCBCSSSBCEEEECSSCSST
T ss_pred cCCEeCCcEEEEEEecCCCCC
Confidence 999999999999999876543
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=5.8e-21 Score=145.87 Aligned_cols=82 Identities=20% Similarity=0.428 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhC-CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHh-CCceeCCEEEEEEee
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYG-PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA-DGKKIDGRRVLVDVE 178 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l-~g~~i~g~~i~V~~a 178 (363)
+++|||+|||+.+|+++|+++|++|| .|..|.|+.++.||.++|||||+|.+.++|.+||..| |+..|+|+.|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999987 466899999999999
Q ss_pred cccC
Q psy16184 179 RSRT 182 (363)
Q Consensus 179 ~~~~ 182 (363)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8754
No 9
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.6e-20 Score=146.81 Aligned_cols=86 Identities=29% Similarity=0.561 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..||+ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 445678999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred eecccCC
Q psy16184 177 VERSRTV 183 (363)
Q Consensus 177 ~a~~~~~ 183 (363)
++.....
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9976543
No 10
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-20 Score=144.71 Aligned_cols=89 Identities=22% Similarity=0.421 Sum_probs=82.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred eecccCCCC
Q psy16184 177 VERSRTVKG 185 (363)
Q Consensus 177 ~a~~~~~~~ 185 (363)
++.+.....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 998765543
No 11
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.83 E-value=6.1e-23 Score=181.77 Aligned_cols=150 Identities=20% Similarity=0.350 Sum_probs=109.9
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCC--CCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDP--KDTPPPTRVETREERLERRRRERAEQVAYKLEQE 84 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363)
.+|..+|.++|+|..+ -|+.++.|++++|| +||.|.+..... ...+....+.++.+.+
T Consensus 30 ~~L~~~F~~~G~I~~v-~i~~d~~tg~~~G~-afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~------------------ 89 (213)
T 4f02_A 30 AMLYEKFSPAGPILSI-RVCRDMITRRSLGY-AYVNFQQPADAERALDTMNFDVIKGKPVRI------------------ 89 (213)
T ss_dssp HHHHHHHGGGSCEEEE-EEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTEECEE------------------
T ss_pred HHHHHHHHhhCCEEEE-EEecccCCCCcccc-ccceeCCHHHHHHHHHHhhhhhcCCccccc------------------
Confidence 3589999999999988 46778899999999 999986543100 0000011110000000
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy16184 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 85 ~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
...............+|||+|||+.+|+++|.++|..||.|..|.|+.+. +.++|||||+|.+.++|.+||..||
T Consensus 90 ---~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 90 ---MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp ---EECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ---ccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhC
Confidence 00000000111235689999999999999999999999999999999874 4579999999999999999999999
Q ss_pred CceeCCEEEEEEeeccc
Q psy16184 165 GKKIDGRRVLVDVERSR 181 (363)
Q Consensus 165 g~~i~g~~i~V~~a~~~ 181 (363)
|..|+|+.|.|.++.++
T Consensus 165 g~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 165 GMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TCEETTEECEEEECCCH
T ss_pred CCEECCEEEEEEEcCCC
Confidence 99999999999999764
No 12
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=142.75 Aligned_cols=85 Identities=26% Similarity=0.509 Sum_probs=80.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cccCC
Q psy16184 179 RSRTV 183 (363)
Q Consensus 179 ~~~~~ 183 (363)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87554
No 13
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.6e-20 Score=142.07 Aligned_cols=85 Identities=21% Similarity=0.382 Sum_probs=80.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEE-EEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKI-VMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v-~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
.+.++|||+|||+.+|+++|..+|.+||.|..| .|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ecccCC
Q psy16184 178 ERSRTV 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+.+...
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987554
No 14
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.7e-20 Score=143.99 Aligned_cols=89 Identities=27% Similarity=0.436 Sum_probs=82.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEE
Q psy16184 95 NATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 174 (363)
Q Consensus 95 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 174 (363)
.....+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34456688999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeecccCC
Q psy16184 175 VDVERSRTV 183 (363)
Q Consensus 175 V~~a~~~~~ 183 (363)
|.++.+...
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999987544
No 15
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.9e-22 Score=168.48 Aligned_cols=149 Identities=17% Similarity=0.305 Sum_probs=110.3
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCC--CCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDP--KDTPPPTRVETREERLERRRRERAEQVAYKLEQE 84 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363)
.+|..+|.++|+|..+. +..++ +++++|| +||.|.+..... ...+....+.+..+.+
T Consensus 15 ~~l~~~f~~~G~i~~v~-i~~~~-~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g~~i~v------------------ 73 (166)
T 3md3_A 15 DILKQYFQVGGPIANIK-IMIDK-NNKNVNY-AFVEYHQSHDANIALQTLNGKQIENNIVKI------------------ 73 (166)
T ss_dssp HHHHHHHGGGSCEEEEE-EECCC-C-CCEEE-EEEEESSHHHHHHHHHHHTTCEETTEECEE------------------
T ss_pred HHHHHHHHhcCCeEEEE-EEECC-CCCCCCE-EEEEeCCHHHHHHHHHHcCCCccCCCeeEE------------------
Confidence 56999999999988763 44444 4678999 899885533100 0011111111110000
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy16184 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 85 ~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
............+.++|||+|||+.+|+++|.++|+.||.|..+.|+.++.+|.++|||||+|.+.++|.+|+..||
T Consensus 74 ---~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 74 ---NWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp ---EECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred ---EEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 00111222334567899999999999999999999999999999999998999999999999999999999999999
Q ss_pred CceeCCEEEEEEeec
Q psy16184 165 GKKIDGRRVLVDVER 179 (363)
Q Consensus 165 g~~i~g~~i~V~~a~ 179 (363)
|..|+|+.|.|.||+
T Consensus 151 g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 151 GQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEETTEECEEEESC
T ss_pred CCccCCcEEEEEecC
Confidence 999999999999985
No 16
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=7.6e-20 Score=145.79 Aligned_cols=87 Identities=20% Similarity=0.328 Sum_probs=81.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+|+++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecccCC
Q psy16184 177 VERSRTV 183 (363)
Q Consensus 177 ~a~~~~~ 183 (363)
++.+...
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9987654
No 17
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=4.4e-20 Score=139.47 Aligned_cols=83 Identities=19% Similarity=0.456 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccc
Q psy16184 179 RSR 181 (363)
Q Consensus 179 ~~~ 181 (363)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 18
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=145.03 Aligned_cols=81 Identities=22% Similarity=0.417 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCC--ccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCc----eeCCEEE
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGP--IKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGK----KIDGRRV 173 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~--i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~----~i~g~~i 173 (363)
.-.||||+|||+.+|+++|.++|++||. |..|.|+.|+.||.++|||||+|.+.++|.+||..|||. .|+|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3569999999999999999999999994 779999999999999999999999999999999999996 5999999
Q ss_pred EEEeecc
Q psy16184 174 LVDVERS 180 (363)
Q Consensus 174 ~V~~a~~ 180 (363)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999964
No 19
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=1.9e-19 Score=143.38 Aligned_cols=88 Identities=18% Similarity=0.430 Sum_probs=82.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
....+.++|||+|||+.+|+++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeecccCC
Q psy16184 176 DVERSRTV 183 (363)
Q Consensus 176 ~~a~~~~~ 183 (363)
.|+.+...
T Consensus 90 ~~a~~~~~ 97 (115)
T 2dgo_A 90 NWATRKPP 97 (115)
T ss_dssp EESSCCCC
T ss_pred EEccCCCC
Confidence 99987544
No 20
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.4e-20 Score=144.12 Aligned_cols=89 Identities=26% Similarity=0.388 Sum_probs=82.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEE
Q psy16184 95 NATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 174 (363)
Q Consensus 95 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 174 (363)
.....+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34455688999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeecccCC
Q psy16184 175 VDVERSRTV 183 (363)
Q Consensus 175 V~~a~~~~~ 183 (363)
|.++.+...
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999987543
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.9e-20 Score=141.93 Aligned_cols=85 Identities=27% Similarity=0.529 Sum_probs=80.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cccCC
Q psy16184 179 RSRTV 183 (363)
Q Consensus 179 ~~~~~ 183 (363)
.+...
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 87654
No 22
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=144.94 Aligned_cols=87 Identities=34% Similarity=0.589 Sum_probs=81.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCC
Q psy16184 177 VERSRTV 183 (363)
Q Consensus 177 ~a~~~~~ 183 (363)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9987543
No 23
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.9e-20 Score=142.38 Aligned_cols=86 Identities=26% Similarity=0.501 Sum_probs=80.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||. ||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ecccCCC
Q psy16184 178 ERSRTVK 184 (363)
Q Consensus 178 a~~~~~~ 184 (363)
+.++...
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9876543
No 24
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=7e-20 Score=154.09 Aligned_cols=86 Identities=26% Similarity=0.449 Sum_probs=81.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..||++.|.|+.|.|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCC
Q psy16184 178 ERSRTV 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987543
No 25
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.6e-20 Score=142.50 Aligned_cols=87 Identities=30% Similarity=0.581 Sum_probs=81.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecccCC
Q psy16184 177 VERSRTV 183 (363)
Q Consensus 177 ~a~~~~~ 183 (363)
++.+...
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9987554
No 26
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=2.6e-20 Score=150.92 Aligned_cols=86 Identities=27% Similarity=0.434 Sum_probs=81.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecccCC
Q psy16184 178 ERSRTV 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+.+...
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 987654
No 27
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=9.2e-20 Score=145.65 Aligned_cols=85 Identities=32% Similarity=0.604 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|++||..|||..|+|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ecccCC
Q psy16184 178 ERSRTV 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+++...
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987543
No 28
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=6.5e-20 Score=137.25 Aligned_cols=81 Identities=21% Similarity=0.447 Sum_probs=77.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
+++|||+|||+.+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999989999999999999999999999999999999999999999976
Q ss_pred c
Q psy16184 181 R 181 (363)
Q Consensus 181 ~ 181 (363)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 29
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.82 E-value=3.9e-22 Score=169.11 Aligned_cols=147 Identities=20% Similarity=0.365 Sum_probs=111.5
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCC--CCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDP--KDTPPPTRVETREERLERRRRERAEQVAYKLEQE 84 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363)
.+|..+|.++|+|..+ .+..++.++.++|| +||.|.+..... ...+....+.+..+.+
T Consensus 18 ~~l~~~f~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g~~l~v------------------ 77 (168)
T 1b7f_A 18 RELYALFRAIGPINTC-RIMRDYKTGYSYGY-AFVDFTSEMDSQRAIKVLNGITVRNKRLKV------------------ 77 (168)
T ss_dssp HHHHHHHHTTSCEEEE-ECCEETTTTEECSE-EEEEESSHHHHHHHHHHHTTCEETTEECEE------------------
T ss_pred HHHHHHHHhcCCeeEE-EEEEeCCCCccceE-EEEEECCHHHHHHHHHhcCCCEeCCcEEEE------------------
Confidence 4699999999999887 45667788999999 899885542100 0000111111100000
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy16184 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 85 ~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
.+ ..+.....+.++|||+|||..+|+++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||
T Consensus 78 --~~---~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 152 (168)
T 1b7f_A 78 --SY---ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 152 (168)
T ss_dssp --EE---CCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred --Ee---cCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 00 0122233457899999999999999999999999999999999998899999999999999999999999999
Q ss_pred CceeCC--EEEEEEee
Q psy16184 165 GKKIDG--RRVLVDVE 178 (363)
Q Consensus 165 g~~i~g--~~i~V~~a 178 (363)
|..|.| +.|.|.||
T Consensus 153 g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 153 NVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCCCTTCSSCCEEEEC
T ss_pred CCEecCCCeEEEEEeC
Confidence 999988 99999986
No 30
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=6e-20 Score=138.06 Aligned_cols=81 Identities=23% Similarity=0.452 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred c
Q psy16184 179 R 179 (363)
Q Consensus 179 ~ 179 (363)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 31
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.9e-20 Score=139.85 Aligned_cols=85 Identities=34% Similarity=0.556 Sum_probs=80.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
....+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeecc
Q psy16184 176 DVERS 180 (363)
Q Consensus 176 ~~a~~ 180 (363)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 32
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=8.8e-20 Score=140.61 Aligned_cols=83 Identities=23% Similarity=0.492 Sum_probs=79.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
|+++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred ccC
Q psy16184 180 SRT 182 (363)
Q Consensus 180 ~~~ 182 (363)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 653
No 33
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=8.3e-20 Score=141.22 Aligned_cols=85 Identities=27% Similarity=0.474 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCC---CCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKV---TGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~---t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+.++. |+.++|||||+|.+.++|.+||..|||..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999998876 6689999999999999999999999999999999999
Q ss_pred EeecccCC
Q psy16184 176 DVERSRTV 183 (363)
Q Consensus 176 ~~a~~~~~ 183 (363)
.++.+...
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987554
No 34
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=1.4e-19 Score=141.38 Aligned_cols=86 Identities=21% Similarity=0.456 Sum_probs=79.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
....+.++|||+|||+.+|+++|.++|.+|| |..|.|+.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3445678999999999999999999999997 999999999999999999999999999999999 79999999999999
Q ss_pred EeecccCC
Q psy16184 176 DVERSRTV 183 (363)
Q Consensus 176 ~~a~~~~~ 183 (363)
.++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99987544
No 35
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=142.77 Aligned_cols=87 Identities=26% Similarity=0.466 Sum_probs=81.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC------CceeCC
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD------GKKIDG 170 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~------g~~i~g 170 (363)
...+.++|||+|||+.+|+++|.++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||..|| +..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEEEEeecccCC
Q psy16184 171 RRVLVDVERSRTV 183 (363)
Q Consensus 171 ~~i~V~~a~~~~~ 183 (363)
+.|.|.++.++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987544
No 36
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=140.35 Aligned_cols=85 Identities=28% Similarity=0.489 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++ ++.++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred eecccC
Q psy16184 177 VERSRT 182 (363)
Q Consensus 177 ~a~~~~ 182 (363)
++.+..
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998754
No 37
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=1.5e-20 Score=143.17 Aligned_cols=82 Identities=17% Similarity=0.339 Sum_probs=73.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhC--CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYG--PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G--~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
.+|||+|||+.+|+++|+++|++|| .|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred ccCC
Q psy16184 180 SRTV 183 (363)
Q Consensus 180 ~~~~ 183 (363)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7544
No 38
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=1.2e-19 Score=142.31 Aligned_cols=88 Identities=23% Similarity=0.354 Sum_probs=81.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee---CCEE
Q psy16184 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI---DGRR 172 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i---~g~~ 172 (363)
....+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..| .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3445678999999999999999999999999999999999999999999999999999999999999999988 8999
Q ss_pred EEEEeecccCC
Q psy16184 173 VLVDVERSRTV 183 (363)
Q Consensus 173 i~V~~a~~~~~ 183 (363)
|.|.++.+...
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987543
No 39
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=142.43 Aligned_cols=88 Identities=17% Similarity=0.479 Sum_probs=81.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEecc-CCCCCcceEEEEEecCHHHHHHHHHHh-CCceeCCEEE
Q psy16184 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHN-KVTGKPRGYAFIEYEHERDMHSAYKHA-DGKKIDGRRV 173 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d-~~t~~~~g~afV~f~~~~~a~~Ai~~l-~g~~i~g~~i 173 (363)
....+.++|||+|||+.+|+++|+++|.+||.|..|.|+.+ +.++.++|||||+|.+.++|.+||..| |+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34456789999999999999999999999999999999998 789999999999999999999999999 9999999999
Q ss_pred EEEeecccCC
Q psy16184 174 LVDVERSRTV 183 (363)
Q Consensus 174 ~V~~a~~~~~ 183 (363)
.|.++.+...
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987544
No 40
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=138.94 Aligned_cols=83 Identities=20% Similarity=0.411 Sum_probs=78.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eec
Q psy16184 177 VER 179 (363)
Q Consensus 177 ~a~ 179 (363)
||+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 41
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=140.88 Aligned_cols=84 Identities=21% Similarity=0.355 Sum_probs=79.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccE--------EEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q psy16184 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKK--------IVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKK 167 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~--------v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~ 167 (363)
....+.++|||+|||+.+|+++|+++|++||.|.. |.|+.++.+|.++|||||+|.+.++|..||..|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34456789999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eCCEEEEEEeec
Q psy16184 168 IDGRRVLVDVER 179 (363)
Q Consensus 168 i~g~~i~V~~a~ 179 (363)
|.|+.|.|.+|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999974
No 42
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=141.86 Aligned_cols=88 Identities=15% Similarity=0.422 Sum_probs=81.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEE
Q psy16184 95 NATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 174 (363)
Q Consensus 95 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 174 (363)
.....+.++|||+|||+.+|+++|.++|.+||.|..|.|+.+ ++.++|||||+|.+.++|.+||..||+..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 344457889999999999999999999999999999999987 899999999999999999999999999999999999
Q ss_pred EEeecccCCC
Q psy16184 175 VDVERSRTVK 184 (363)
Q Consensus 175 V~~a~~~~~~ 184 (363)
|.++.+....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2d9p_A 87 VALAQRKEER 96 (103)
T ss_dssp EEECSSCCCC
T ss_pred EEEecccccC
Confidence 9999876543
No 43
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=143.04 Aligned_cols=87 Identities=25% Similarity=0.404 Sum_probs=81.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCcc--------EEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIK--------KIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI 168 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~--------~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 168 (363)
...+.++|||+|||+.+|+++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|.+||..|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 699999989999999999999999999999999999999
Q ss_pred CCEEEEEEeecccCC
Q psy16184 169 DGRRVLVDVERSRTV 183 (363)
Q Consensus 169 ~g~~i~V~~a~~~~~ 183 (363)
.|+.|.|.++.+...
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987544
No 44
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=141.40 Aligned_cols=85 Identities=20% Similarity=0.391 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVT-GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t-~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
...+.++|||+|||+.+|+++|.++|..|| |..|.|+.++.+ +.++|||||+|.+.++|.+|| .||+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345678999999999999999999999999 999999999887 999999999999999999999 89999999999999
Q ss_pred EeecccCC
Q psy16184 176 DVERSRTV 183 (363)
Q Consensus 176 ~~a~~~~~ 183 (363)
.++.++..
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987544
No 45
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.9e-20 Score=142.88 Aligned_cols=85 Identities=27% Similarity=0.446 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccC
Q psy16184 178 ERSRT 182 (363)
Q Consensus 178 a~~~~ 182 (363)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98754
No 46
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.2e-19 Score=138.02 Aligned_cols=88 Identities=20% Similarity=0.474 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++. .++|||||+|.+.++|.+||..||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999998753 388999999999999999999999999999999999
Q ss_pred eecccCCCCC
Q psy16184 177 VERSRTVKGW 186 (363)
Q Consensus 177 ~a~~~~~~~~ 186 (363)
++.+.....+
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2cq3_A 89 NATARVMTNS 98 (103)
T ss_dssp ECCSSCCCCC
T ss_pred EcccCCCCCC
Confidence 9988765544
No 47
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.81 E-value=7.2e-22 Score=167.00 Aligned_cols=147 Identities=19% Similarity=0.353 Sum_probs=109.9
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCC--CCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDP--KDTPPPTRVETREERLERRRRERAEQVAYKLEQE 84 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363)
.+|..+|..+|+|..+ .+..++.++.++|| +||.|.+..... ...+....+.+..+.+
T Consensus 17 ~~l~~~f~~~G~i~~v-~~~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g~~l~v------------------ 76 (167)
T 1fxl_A 17 EEFRSLFGSIGEIESC-KLVRDKITGQSLGY-GFVNYIDPKDAEKAINTLNGLRLQTKTIKV------------------ 76 (167)
T ss_dssp HHHHHHHHTTSCEEEE-EEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTEECEE------------------
T ss_pred HHHHHHHHhcCCeEEE-EEEeCCCCCcceeE-EEEEECCHHHHHHHHHHcCCCccCCceEEE------------------
Confidence 4689999999999887 45667788999999 899885532100 0001111111100000
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy16184 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 85 ~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
.+ ..+.....+.++|||+|||..+|+++|.++|.+||.|..+.|+.+..+|.++|||||+|.+.++|.+|+..||
T Consensus 77 --~~---~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 77 --SY---ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp --EE---CCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred --Ee---cCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 00 0111223356799999999999999999999999999999999998899999999999999999999999999
Q ss_pred CceeCCEE--EEEEee
Q psy16184 165 GKKIDGRR--VLVDVE 178 (363)
Q Consensus 165 g~~i~g~~--i~V~~a 178 (363)
|..|.|+. |.|.||
T Consensus 152 g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 152 GQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCCTTCSSCCEEEEC
T ss_pred CCccCCCccceEEEeC
Confidence 99999965 888875
No 48
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=139.40 Aligned_cols=84 Identities=19% Similarity=0.400 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCcc-EEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEE----
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIK-KIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR---- 172 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~-~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~---- 172 (363)
..+.++|||+|||+.+|+++|.++|.+||.|. .|.|+.++.++.++|||||+|.+.++|++||..|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34678999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEeeccc
Q psy16184 173 VLVDVERSR 181 (363)
Q Consensus 173 i~V~~a~~~ 181 (363)
|.|.|+.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998764
No 49
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=2.1e-19 Score=142.03 Aligned_cols=85 Identities=27% Similarity=0.435 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|..+|.+||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecccC
Q psy16184 178 ERSRT 182 (363)
Q Consensus 178 a~~~~ 182 (363)
+.+..
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98754
No 50
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=9.8e-19 Score=139.00 Aligned_cols=85 Identities=21% Similarity=0.355 Sum_probs=79.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|..||..||++.|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999986 69999999999999999999999999999999999999
Q ss_pred eecccC
Q psy16184 177 VERSRT 182 (363)
Q Consensus 177 ~a~~~~ 182 (363)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 997543
No 51
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=3.4e-19 Score=139.52 Aligned_cols=86 Identities=19% Similarity=0.364 Sum_probs=79.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC---EEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDG---RRV 173 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g---~~i 173 (363)
...+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++ ++.++|||||+|.+.++|.+||..|||..|.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999987 89999999999999999999999999999998 999
Q ss_pred EEEeecccCC
Q psy16184 174 LVDVERSRTV 183 (363)
Q Consensus 174 ~V~~a~~~~~ 183 (363)
.|.++.+...
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999987554
No 52
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=142.21 Aligned_cols=85 Identities=25% Similarity=0.484 Sum_probs=80.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccc
Q psy16184 177 VERSR 181 (363)
Q Consensus 177 ~a~~~ 181 (363)
++.++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 99765
No 53
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=3.3e-20 Score=144.26 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC-EE
Q psy16184 100 PFKTLFIARVNY------DTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDG-RR 172 (363)
Q Consensus 100 ~~~~l~V~nL~~------~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g-~~ 172 (363)
..++|||+|||+ .+++++|.++|++||.|..|.|+.++.||.++|||||+|.+.++|.+||..|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 367999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEeeccc
Q psy16184 173 VLVDVERSR 181 (363)
Q Consensus 173 i~V~~a~~~ 181 (363)
|.|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999753
No 54
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-18 Score=135.93 Aligned_cols=85 Identities=25% Similarity=0.426 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.+ ++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 4456789999999999999999999999999999999988543 68999999999999999999999999999999999
Q ss_pred eecccCC
Q psy16184 177 VERSRTV 183 (363)
Q Consensus 177 ~a~~~~~ 183 (363)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9987543
No 55
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=4.4e-19 Score=139.39 Aligned_cols=81 Identities=21% Similarity=0.463 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++ ++.++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ec
Q psy16184 178 ER 179 (363)
Q Consensus 178 a~ 179 (363)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 56
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=3.9e-19 Score=134.28 Aligned_cols=80 Identities=20% Similarity=0.456 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||. +++..|+|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3467899999999999999999999999999999999999999999999999999999999997 588999999999997
Q ss_pred e
Q psy16184 178 E 178 (363)
Q Consensus 178 a 178 (363)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 57
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=139.95 Aligned_cols=84 Identities=21% Similarity=0.398 Sum_probs=79.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHh-hCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eCCEEEEEE
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEV-YGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKK-IDGRRVLVD 176 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~-~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~-i~g~~i~V~ 176 (363)
.+.++|||+|||+.+|+++|.++|.+ ||.|..|.|+.++ ++.++|||||+|.+.++|.+||..||+.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 46789999999999999999999999 9999999999998 99999999999999999999999999999 999999999
Q ss_pred eecccCC
Q psy16184 177 VERSRTV 183 (363)
Q Consensus 177 ~a~~~~~ 183 (363)
++.+...
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9976543
No 58
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=135.35 Aligned_cols=82 Identities=27% Similarity=0.511 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCC-cceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGK-PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~-~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
..++|||+|||+.+|+++|.++|.+||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 367999999999999999999999999999999999877766 8999999999999999999999999999999999999
Q ss_pred ccc
Q psy16184 179 RSR 181 (363)
Q Consensus 179 ~~~ 181 (363)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 59
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=139.90 Aligned_cols=87 Identities=22% Similarity=0.481 Sum_probs=81.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
....+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||.. |++.|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3455678999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred EeecccCC
Q psy16184 176 DVERSRTV 183 (363)
Q Consensus 176 ~~a~~~~~ 183 (363)
.++.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99987554
No 60
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=3.3e-19 Score=142.15 Aligned_cols=80 Identities=23% Similarity=0.460 Sum_probs=74.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
..+|||+|||+.+|+++|.++|++||.|..|.|+.+. +.++|||||+|.+.++|+.||..|||..|+|+.|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999885 45789999999999999999999999999999999999876
Q ss_pred cC
Q psy16184 181 RT 182 (363)
Q Consensus 181 ~~ 182 (363)
..
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 61
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.9e-19 Score=141.53 Aligned_cols=89 Identities=16% Similarity=0.322 Sum_probs=80.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHH---HHHHhhCCccEEEEeccCCCC---CcceEEEEEecCHHHHHHHHHHhCCcee
Q psy16184 95 NATMDPFKTLFIARVNYDTSESKLR---REFEVYGPIKKIVMVHNKVTG---KPRGYAFIEYEHERDMHSAYKHADGKKI 168 (363)
Q Consensus 95 ~~~~~~~~~l~V~nL~~~~t~~~L~---~~F~~~G~i~~v~i~~d~~t~---~~~g~afV~f~~~~~a~~Ai~~l~g~~i 168 (363)
.....+.++|||+|||+.+++++|. ++|.+||.|..|.|+.++.++ .++|||||+|.+.++|++||..|||..|
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3445567899999999999999999 999999999999999887654 5569999999999999999999999999
Q ss_pred CCEEEEEEeecccCC
Q psy16184 169 DGRRVLVDVERSRTV 183 (363)
Q Consensus 169 ~g~~i~V~~a~~~~~ 183 (363)
+|+.|.|.++.++..
T Consensus 89 ~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 89 DGRTLKASLGTTKYC 103 (111)
T ss_dssp TTEEEEEESCCCCSC
T ss_pred CCEEEEEEecccccc
Confidence 999999999987653
No 62
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-19 Score=137.91 Aligned_cols=85 Identities=16% Similarity=0.222 Sum_probs=79.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
.....++|||+|||+.+|+++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++||..|||..|.|+.|.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34456899999999999999999999999999988888888899999999999999999999999999999999999999
Q ss_pred eeccc
Q psy16184 177 VERSR 181 (363)
Q Consensus 177 ~a~~~ 181 (363)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98653
No 63
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=1.7e-18 Score=135.16 Aligned_cols=78 Identities=21% Similarity=0.492 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+|||+.+|+++|+++|.+||.|..|.|+ +|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 457899999999999999999999999999999986 369999999999999999999999999999999999
Q ss_pred cccCCC
Q psy16184 179 RSRTVK 184 (363)
Q Consensus 179 ~~~~~~ 184 (363)
.+....
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876543
No 64
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=137.31 Aligned_cols=84 Identities=25% Similarity=0.392 Sum_probs=76.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
....+.++|||+|||+.+|+++|+++|.+||.|..|.|+. ++.++|||||+|.+.++|++||..||+..|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445678999999999999999999999999999999965 4568999999999999999999999999999999999
Q ss_pred EeecccC
Q psy16184 176 DVERSRT 182 (363)
Q Consensus 176 ~~a~~~~ 182 (363)
.++++..
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4a_A 94 EFPRSGR 100 (109)
T ss_dssp ECCCCCC
T ss_pred EEcccCC
Confidence 9997754
No 65
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.4e-19 Score=135.14 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 100 PFKTLFIARVNYDTSESKLR----REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~----~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
..++|||+|||+.+++++|+ ++|.+||.|..|.|+.++.+ +|||||+|.+.++|.+||..|||..|+|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 46799999999999999999 99999999999999988755 789999999999999999999999999999999
Q ss_pred EeecccCC
Q psy16184 176 DVERSRTV 183 (363)
Q Consensus 176 ~~a~~~~~ 183 (363)
.++.+...
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99977543
No 66
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=149.63 Aligned_cols=82 Identities=18% Similarity=0.372 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhC--CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYG--PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G--~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..++|||+|||+++|+++|.++|..|| .|..|.|+.|+.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 357999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q psy16184 178 ERSR 181 (363)
Q Consensus 178 a~~~ 181 (363)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 67
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=4.8e-19 Score=134.30 Aligned_cols=80 Identities=21% Similarity=0.592 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 469999999999999999999999999999999999889999999999999999999999 8999999999999999876
Q ss_pred c
Q psy16184 181 R 181 (363)
Q Consensus 181 ~ 181 (363)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 68
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=136.50 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC-----EEE
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDG-----RRV 173 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g-----~~i 173 (363)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||..||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 35789999999999999999999999999999999875 899999999999999999999999999 999
Q ss_pred EEEeecccCC
Q psy16184 174 LVDVERSRTV 183 (363)
Q Consensus 174 ~V~~a~~~~~ 183 (363)
.|+++.++..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999987543
No 69
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=135.26 Aligned_cols=86 Identities=17% Similarity=0.380 Sum_probs=79.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
....+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||. +++.|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 344567899999999999999999999999999999999999899999999999999999999998 478999999999
Q ss_pred EeecccCC
Q psy16184 176 DVERSRTV 183 (363)
Q Consensus 176 ~~a~~~~~ 183 (363)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99987544
No 70
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.79 E-value=9.7e-21 Score=161.17 Aligned_cols=147 Identities=18% Similarity=0.323 Sum_probs=107.9
Q ss_pred hhhhhcCCCCCCCCCCC-----CCCCCCCCCCCCCCccccccccccC-CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLP-----PVEKLPHEKKTHGYSGIAAFLNEFE-DPKDTPPPTRVETREERLERRRRERAEQVAYK 80 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~-----p~~~~p~t~~s~g~~g~v~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (363)
.+|..+|.+++.+.-+. ++. ...++.++|| +||.|.+... ..+..+....+.++.+.+..
T Consensus 19 ~~l~~~F~~~g~~~g~~~~~~~~v~-~~~~~~~~g~-afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~------------ 84 (172)
T 2g4b_A 19 EAMMDFFNAQMRLGGLTQAPGNPVL-AVQINQDKNF-AFLEFRSVDETTQAMAFDGIIFQGQSLKIRR------------ 84 (172)
T ss_dssp HHHHHHHHHHHHHTTCCSSSSCSEE-EEEEETTTTE-EEEEESSHHHHHHHGGGTTCEETTEECEEEC------------
T ss_pred HHHHHHHHHHhhhcccccCCCCcee-eeEecCCCCE-EEEEeCCHHHHHHHHHhCCcEecCceeeecC------------
Confidence 45888898884322210 111 2234678999 9999976543 11113344444443222211
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHH
Q psy16184 81 LEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAY 160 (363)
Q Consensus 81 ~~~~~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai 160 (363)
+ .........++|||+|||+.+|+++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+|+
T Consensus 85 ---------~--~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (172)
T 2g4b_A 85 ---------P--HDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 153 (172)
T ss_dssp ---------C--SSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHH
T ss_pred ---------C--cccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 1 11112234689999999999999999999999999999999999889999999999999999999999
Q ss_pred HHhCCceeCCEEEEEEee
Q psy16184 161 KHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 161 ~~l~g~~i~g~~i~V~~a 178 (363)
..|||..|+|+.|.|.+|
T Consensus 154 ~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 154 AGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHTTCEETTEECEEEEC
T ss_pred HHcCCCEECCeEEEEEeC
Confidence 999999999999999997
No 71
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=142.83 Aligned_cols=82 Identities=26% Similarity=0.542 Sum_probs=77.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
.++|||+|||+.+|+++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||.. |+..|+|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 57999999999999999999999999999999999999999999999999999999999997 99999999999999987
Q ss_pred cCC
Q psy16184 181 RTV 183 (363)
Q Consensus 181 ~~~ 183 (363)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 72
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=3.4e-19 Score=142.62 Aligned_cols=82 Identities=17% Similarity=0.331 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|+|+.|.|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ec
Q psy16184 178 ER 179 (363)
Q Consensus 178 a~ 179 (363)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 73
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=5e-19 Score=135.96 Aligned_cols=82 Identities=23% Similarity=0.454 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+.++. +.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34578999999999999999999999999999999999874 89999999999999999999999999999999999999
Q ss_pred ecc
Q psy16184 178 ERS 180 (363)
Q Consensus 178 a~~ 180 (363)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 853
No 74
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=2.6e-19 Score=145.74 Aligned_cols=87 Identities=33% Similarity=0.573 Sum_probs=81.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
....+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|+|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccC
Q psy16184 176 DVERSRT 182 (363)
Q Consensus 176 ~~a~~~~ 182 (363)
.|+.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997643
No 75
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6e-19 Score=137.34 Aligned_cols=81 Identities=16% Similarity=0.312 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCEEEEE
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD--GKKIDGRRVLV 175 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~--g~~i~g~~i~V 175 (363)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|..||..|+ +..|.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 446789999999999999999999999999999999875 6999999999999999999886 47899999999
Q ss_pred EeecccCCC
Q psy16184 176 DVERSRTVK 184 (363)
Q Consensus 176 ~~a~~~~~~ 184 (363)
.|++.+...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999876543
No 76
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=7.3e-19 Score=149.28 Aligned_cols=86 Identities=27% Similarity=0.423 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|..+|.+||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCC
Q psy16184 178 ERSRTV 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+.+...
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 987543
No 77
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-19 Score=143.29 Aligned_cols=81 Identities=15% Similarity=0.371 Sum_probs=77.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
.++|||+|||+.+|+++|.++|..||.|..|.|+.++.++.++|||||+|.+.++|.+|| .|||+.|+|+.|.|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 569999999999999999999999999999999999999999999999999999999999 8999999999999999976
Q ss_pred cC
Q psy16184 181 RT 182 (363)
Q Consensus 181 ~~ 182 (363)
..
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 78
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=2.4e-19 Score=146.31 Aligned_cols=86 Identities=16% Similarity=0.320 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccE--EEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCc----eeCC
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKK--IVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGK----KIDG 170 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~--v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~----~i~g 170 (363)
...+.++|||+|||+.+|+++|.++|.+||.|.. |.|+.++.||.++|||||+|.+. +|.+||..|||. .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999966 99999999999999999999999 999999999999 9999
Q ss_pred EEEEEEeecccCC
Q psy16184 171 RRVLVDVERSRTV 183 (363)
Q Consensus 171 ~~i~V~~a~~~~~ 183 (363)
+.|.|.++.+...
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987543
No 79
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-19 Score=140.07 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+.++. |.++|||||+|.+.++|.+||. ||++.|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3467999999999999999999999999999999999976 9999999999999999999999 8999999999999997
Q ss_pred cc
Q psy16184 179 RS 180 (363)
Q Consensus 179 ~~ 180 (363)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 80
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=7.7e-19 Score=138.66 Aligned_cols=85 Identities=18% Similarity=0.420 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+|+++|..+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||..+ +..|+|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3446789999999999999999999999999999999999999999999999999999999999975 599999999999
Q ss_pred eecccC
Q psy16184 177 VERSRT 182 (363)
Q Consensus 177 ~a~~~~ 182 (363)
++.++.
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 997654
No 81
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=3.2e-19 Score=137.02 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
+.++|||+|||+.+|+++|+++|.+||.|..+.|+.++.++.++|||||+|.+.++|++||..||+..|.|+.|.|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999999999988899999999999999999999999999999999999999875
No 82
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=7.2e-19 Score=142.40 Aligned_cols=82 Identities=17% Similarity=0.318 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEE
Q psy16184 98 MDPFKTLFIARVNYDTSESKLR----REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 173 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~----~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 173 (363)
..+.++|||+|||+.+++++|+ ++|++||.|..|.|.. ++.++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4567899999999999999875 7999999999988753 68899999999999999999999999999999999
Q ss_pred EEEeecccC
Q psy16184 174 LVDVERSRT 182 (363)
Q Consensus 174 ~V~~a~~~~ 182 (363)
.|.|+....
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999997643
No 83
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-19 Score=142.31 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCc-cEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPI-KKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i-~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
..+.++|||+|||+.+|+++|+++|..||.| ..|.|+.++ ++.++|||||+|.+.++|.+||.. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4457899999999999999999999999999 899999998 999999999999999999999996 9999999999999
Q ss_pred eecccC
Q psy16184 177 VERSRT 182 (363)
Q Consensus 177 ~a~~~~ 182 (363)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997654
No 84
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=130.87 Aligned_cols=81 Identities=21% Similarity=0.372 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
...++|||+|||+.+|+++|+++|..| .|..|.|+.+ .+|.++|||||+|.+.++|.+||. ||+..|+|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 456899999999999999999999999 9999999998 789999999999999999999999 9999999999999999
Q ss_pred cccC
Q psy16184 179 RSRT 182 (363)
Q Consensus 179 ~~~~ 182 (363)
.+..
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7653
No 85
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.77 E-value=1.3e-20 Score=163.98 Aligned_cols=172 Identities=15% Similarity=0.256 Sum_probs=113.6
Q ss_pred hhhhhcCCCCCCCCCCCC----CCCCCCCCCCCCCccccccccccC-CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPP----VEKLPHEKKTHGYSGIAAFLNEFE-DPKDTPPPTRVETREERLERRRRERAEQVAYKL 81 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p----~~~~p~t~~s~g~~g~v~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (363)
.+|..+|..++.|.-+.+ ......++.++|| +||.|.+... ..+..+....+.++.+.+........ ....
T Consensus 19 ~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~-afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~---~~~~ 94 (198)
T 2yh0_A 19 EAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNF-AFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP---LPGM 94 (198)
T ss_dssp HHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTE-EEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCC---CCCS
T ss_pred HHHHHHHHHHHhhcccccCCCCceEEeEecCCCCE-EEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCC---CCCC
Confidence 458889998853332210 1112345778999 9999977543 11113444444443322211000000 0000
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHH
Q psy16184 82 EQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161 (363)
Q Consensus 82 ~~~~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~ 161 (363)
........|.........+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|..||.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 95 SENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp SSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHH
T ss_pred cCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 00000000000111223567899999999999999999999999999999999998899999999999999999999999
Q ss_pred HhCCceeCCEEEEEEeecccC
Q psy16184 162 HADGKKIDGRRVLVDVERSRT 182 (363)
Q Consensus 162 ~l~g~~i~g~~i~V~~a~~~~ 182 (363)
.|||..|+|+.|.|.++.+..
T Consensus 175 ~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 175 GLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHTTCEETTEECEEEESCCCC
T ss_pred HcCCCEECCEEEEEEECCCCC
Confidence 999999999999999997754
No 86
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=1.1e-18 Score=133.19 Aligned_cols=82 Identities=20% Similarity=0.396 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+|||+.+|+++|+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|.+||..||+..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999874 7899999999999999999999999999999999999999
Q ss_pred cccC
Q psy16184 179 RSRT 182 (363)
Q Consensus 179 ~~~~ 182 (363)
.+..
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7754
No 87
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=134.11 Aligned_cols=86 Identities=29% Similarity=0.554 Sum_probs=77.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEE
Q psy16184 95 NATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 174 (363)
Q Consensus 95 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 174 (363)
.....+.++|||+|||+.+|+++|+++|..| ..|.|+.++.++.++|||||+|.+.++|++||..||++.|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3445678899999999999999999999976 3678888888999999999999999999999999999999999999
Q ss_pred EEeecccCC
Q psy16184 175 VDVERSRTV 183 (363)
Q Consensus 175 V~~a~~~~~ 183 (363)
|.+++++..
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999987543
No 88
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.7e-18 Score=129.02 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
.+.-|||+||++.+|+++|+++|.+||+|..+.|+. ++|||||+|.+.++|.+|+..||+..|.|+.|.|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 366899999999999999999999999999999965 57999999999999999999999999999999999984
No 89
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.8e-19 Score=137.93 Aligned_cols=82 Identities=30% Similarity=0.669 Sum_probs=78.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999976
Q ss_pred cC
Q psy16184 181 RT 182 (363)
Q Consensus 181 ~~ 182 (363)
..
T Consensus 88 ~~ 89 (104)
T 1p1t_A 88 EK 89 (104)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 90
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-19 Score=140.35 Aligned_cols=85 Identities=21% Similarity=0.401 Sum_probs=74.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEE
Q psy16184 95 NATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNK-VTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 173 (363)
Q Consensus 95 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~-~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 173 (363)
.......++|||+|||+.+|+++|.++|+.|| |..|.|+.++ .+|.++|||||+|.+.++|.+|| .|||..|+|+.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 33445678999999999999999999999999 9999999987 68999999999999999999999 799999999999
Q ss_pred EEEeeccc
Q psy16184 174 LVDVERSR 181 (363)
Q Consensus 174 ~V~~a~~~ 181 (363)
.|.++.+.
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99999764
No 91
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.4e-18 Score=132.80 Aligned_cols=84 Identities=14% Similarity=0.243 Sum_probs=74.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHh--CCceeCCEEE
Q psy16184 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA--DGKKIDGRRV 173 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l--~g~~i~g~~i 173 (363)
....++++|||+|||+.+|+++|.++|.+||.|..|.|+.+ +|||||+|.+.++|..||..| ++..|.|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34457889999999999999999999999999999999765 699999999999999999977 5788999999
Q ss_pred EEEeecccCCCC
Q psy16184 174 LVDVERSRTVKG 185 (363)
Q Consensus 174 ~V~~a~~~~~~~ 185 (363)
.|.|+.......
T Consensus 84 ~V~~a~~~~~~~ 95 (101)
T 2cq1_A 84 YIQYSNHKELKT 95 (101)
T ss_dssp EEEECSCSSCCC
T ss_pred EEEEcCcccCcC
Confidence 999998766543
No 92
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=3.6e-19 Score=130.62 Aligned_cols=75 Identities=19% Similarity=0.453 Sum_probs=72.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 103 ~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
+|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+. ||+..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999998 9999999999999875
No 93
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=135.93 Aligned_cols=85 Identities=20% Similarity=0.261 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCC-ccEEEEe-ccCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCEEEE
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGP-IKKIVMV-HNKVTGKPRGYAFIEYEHERDMHSAYKHAD--GKKIDGRRVL 174 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~-i~~v~i~-~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~--g~~i~g~~i~ 174 (363)
.+.++|||+|||+.+|+++|.++|..||. |..|.|+ .+..++.++|||||+|.+.++|..||..|| +..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 788889999999999999999999999996 5899999999
Q ss_pred EEeecccCC
Q psy16184 175 VDVERSRTV 183 (363)
Q Consensus 175 V~~a~~~~~ 183 (363)
|.|+.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987543
No 94
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.4e-19 Score=141.24 Aligned_cols=87 Identities=21% Similarity=0.372 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|.++|..||.|..|.+..+..++.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999995433322223788999999999999999999999999999999999999
Q ss_pred ecccCCC
Q psy16184 178 ERSRTVK 184 (363)
Q Consensus 178 a~~~~~~ 184 (363)
+.+....
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876543
No 95
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=2.8e-18 Score=144.40 Aligned_cols=85 Identities=31% Similarity=0.602 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecccC
Q psy16184 178 ERSRT 182 (363)
Q Consensus 178 a~~~~ 182 (363)
+.+..
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 98754
No 96
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=136.59 Aligned_cols=85 Identities=21% Similarity=0.497 Sum_probs=77.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEE
Q psy16184 95 NATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 174 (363)
Q Consensus 95 ~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 174 (363)
.....+.++|||+|||..+|+++|.++|++||.|..|.|+.++ +.++|||||+|.+.++|.+|+..|||..|+|+.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445567899999999999999999999999999999999874 45899999999999999999999999999999999
Q ss_pred EEeeccc
Q psy16184 175 VDVERSR 181 (363)
Q Consensus 175 V~~a~~~ 181 (363)
|.++.++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999765
No 97
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.77 E-value=8.8e-21 Score=161.66 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=106.9
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCC--CCCCCccccccccccCCC--CCCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEK--KTHGYSGIAAFLNEFEDP--KDTPPPTRVETREERLERRRRERAEQVAYKLE 82 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~--~s~g~~g~v~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (363)
.+|..+|.++|+|..+ .++.++.++ +++|| +||.|.+..... ...+....+....
T Consensus 18 ~~l~~~F~~~G~i~~v-~i~~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~~~~~~~~~------------------- 76 (175)
T 3nmr_A 18 KDLRELFEQYGAVYEI-NVLRDRSQNPPQSKGC-CFVTFYTRKAALEAQNALHNMKVLPGM------------------- 76 (175)
T ss_dssp HHHHHHHHTTSCEEEE-EEEEECSSSSCEEEEE-EEEEESSHHHHHHHHHHHTTTCCCTTC-------------------
T ss_pred HHHHHHHHhCCCEEEE-EEEecCCCCCCCcceE-EEEEECCHHHHHHHHHHhcCcEEccCC-------------------
Confidence 4589999999999887 456677776 89999 899985542100 0000000000000
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHH
Q psy16184 83 QEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162 (363)
Q Consensus 83 ~~~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~ 162 (363)
.......+.........+.++|||+|||+.+|+++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+||..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 77 HHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp SSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred ccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 0000000000111122356799999999999999999999999999999999885 689999999999999999999999
Q ss_pred hCCceeC---CEEEEEEeec
Q psy16184 163 ADGKKID---GRRVLVDVER 179 (363)
Q Consensus 163 l~g~~i~---g~~i~V~~a~ 179 (363)
|||..+. |++|.|.||.
T Consensus 156 l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HTTSCCCTTCSSCCEEEECC
T ss_pred hcCCcccCCCCCCeEEEecC
Confidence 9998776 4999999973
No 98
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=3.6e-18 Score=137.91 Aligned_cols=85 Identities=21% Similarity=0.426 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+++++|.++|..||.|..|.|+.+. +|.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ecccCC
Q psy16184 178 ERSRTV 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
|.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 977543
No 99
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=2e-18 Score=139.30 Aligned_cols=80 Identities=26% Similarity=0.602 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|..|| .|||..|+|+.|.|.+++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 359999999999999999999999999999999999889999999999999999999999 7999999999999999975
Q ss_pred c
Q psy16184 181 R 181 (363)
Q Consensus 181 ~ 181 (363)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 100
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-19 Score=135.82 Aligned_cols=81 Identities=17% Similarity=0.296 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred c
Q psy16184 179 R 179 (363)
Q Consensus 179 ~ 179 (363)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 101
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.76 E-value=3e-19 Score=159.61 Aligned_cols=82 Identities=17% Similarity=0.339 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhC--CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYG--PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G--~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..++|||+||++.||+++|+++|.+|| .|..|.|+.++.|++++|||||+|.+.++|++||..||++.|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q psy16184 178 ERSR 181 (363)
Q Consensus 178 a~~~ 181 (363)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8753
No 102
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=134.38 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCEEE
Q psy16184 97 TMDPFKTLFIARVNY-DTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADG--KKIDGRRV 173 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~-~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g--~~i~g~~i 173 (363)
...+.++|||+|||+ .+|+++|.++|.+||.|..|.|+.+ +|||||+|.+.++|..||..||+ ..|.|+.|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 445788999999999 9999999999999999999999875 48999999999999999999886 46999999
Q ss_pred EEEeeccc
Q psy16184 174 LVDVERSR 181 (363)
Q Consensus 174 ~V~~a~~~ 181 (363)
.|.+++..
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99999853
No 103
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=132.97 Aligned_cols=83 Identities=29% Similarity=0.491 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+|+++|+++|.+||.| .|+.+ .++.++|||||+|.+.++|++||..||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34467899999999999999999999999977 56666 689999999999999999999999999999999999999
Q ss_pred eecccCC
Q psy16184 177 VERSRTV 183 (363)
Q Consensus 177 ~a~~~~~ 183 (363)
++.+...
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987543
No 104
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=135.57 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|+++|..|| |..|.|+.++ +++++|||||+|.+.++|++||. ||+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34568999999999999999999999999 4599999997 89999999999999999999995 799999999999999
Q ss_pred ecccC
Q psy16184 178 ERSRT 182 (363)
Q Consensus 178 a~~~~ 182 (363)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87543
No 105
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.76 E-value=5e-21 Score=163.59 Aligned_cols=145 Identities=21% Similarity=0.278 Sum_probs=103.4
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCC-CCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16184 8 NLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFED-PKDTPPPTRVETREERLERRRRERAEQVAYKLEQEIA 86 (363)
Q Consensus 8 ~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (363)
+|..+|..++++..+ +..++.++.++|| +||.|.+.... .+.++....+.++.+.+.
T Consensus 29 ~l~~~f~~~g~~~~~--~~~~~~~~~~~g~-afV~f~~~~~a~~A~~l~g~~~~g~~l~v~------------------- 86 (175)
T 1fje_B 29 ELKVAISELFAKNDL--AVVDVRTGTNRKF-GYVDFESAEDLEKALELTGLKVFGNEIKLE------------------- 86 (175)
T ss_dssp HHHHHHHHHHHHHTC--CCCEEEEETTTTE-EEEEESSHHHHHHHHHGGGEEETTEEEEEE-------------------
T ss_pred HHHHHHHHhCCcceE--EEEECCCCccccE-EEEEECCHHHHHHHHhcCCCEeCCeEEEEe-------------------
Confidence 466778887766552 3446678999999 99999654310 000111111111111110
Q ss_pred hcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q psy16184 87 LWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGK 166 (363)
Q Consensus 87 ~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~ 166 (363)
.+.........+.++|||+|||+.+|+++|.++|..||.|..+ ..++.++|||||+|.+.++|.+||..|||.
T Consensus 87 --~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 1fje_B 87 --KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGA 159 (175)
T ss_dssp --CCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEE
T ss_pred --cCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 1111122233457899999999999999999999999988665 468899999999999999999999999999
Q ss_pred eeCCEEEEEEeeccc
Q psy16184 167 KIDGRRVLVDVERSR 181 (363)
Q Consensus 167 ~i~g~~i~V~~a~~~ 181 (363)
.|+|+.|.|.|+.++
T Consensus 160 ~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 160 EIDGRSVSLYYTGEK 174 (175)
T ss_dssp EETTEEEEEEECSSC
T ss_pred EECCeEEEEEecCCC
Confidence 999999999999764
No 106
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=136.45 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCC------CHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy16184 97 TMDPFKTLFIARVNYDT------SESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 170 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~------t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g 170 (363)
.....++|||+|||+.+ |+++|..+|++||.|..|.|+ ..+|.++|||||+|.+.++|..||..|||..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 33457899999999999 789999999999999999998 3689999999999999999999999999999999
Q ss_pred E-EEEEEeecc
Q psy16184 171 R-RVLVDVERS 180 (363)
Q Consensus 171 ~-~i~V~~a~~ 180 (363)
+ .|.|.++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999999864
No 107
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=140.70 Aligned_cols=81 Identities=23% Similarity=0.438 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e
Q psy16184 178 E 178 (363)
Q Consensus 178 a 178 (363)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 108
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=131.84 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCce--eCCEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKK--IDGRRVL 174 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~--i~g~~i~ 174 (363)
...|+++|||+|||+.+|+++|.++|++||.|..|.|+.. +|||||+|.+.++|.+||..||+.. |.|+.|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3457889999999999999999999999999999999753 6999999999999999999999875 8899999
Q ss_pred EEeeccc
Q psy16184 175 VDVERSR 181 (363)
Q Consensus 175 V~~a~~~ 181 (363)
|++++.+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999764
No 109
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=3.2e-19 Score=135.69 Aligned_cols=81 Identities=19% Similarity=0.505 Sum_probs=74.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeeccc
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSR 181 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 181 (363)
++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.+ |..|+..|||..|+|+.|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999989999999999999999 99999999999999999999999875
Q ss_pred CC
Q psy16184 182 TV 183 (363)
Q Consensus 182 ~~ 183 (363)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 110
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.8e-18 Score=136.06 Aligned_cols=83 Identities=16% Similarity=0.317 Sum_probs=74.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCEEE
Q psy16184 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADG--KKIDGRRV 173 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g--~~i~g~~i 173 (363)
....++++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+||..|++ ..|.|+.|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34457889999999999999999999999999999999875 69999999999999999998874 68999999
Q ss_pred EEEeecccCCC
Q psy16184 174 LVDVERSRTVK 184 (363)
Q Consensus 174 ~V~~a~~~~~~ 184 (363)
.|.+++.+...
T Consensus 100 ~V~~a~~k~~~ 110 (119)
T 2ad9_A 100 YIQFSNHKELK 110 (119)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCCCCC
Confidence 99999876554
No 111
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.9e-19 Score=130.00 Aligned_cols=76 Identities=18% Similarity=0.501 Sum_probs=73.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|+ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999999 9999999999987
No 112
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=129.75 Aligned_cols=77 Identities=21% Similarity=0.460 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+|||+.+|+++|.++|.+||.|..|.|+ +|||||+|.+.++|.+||..||+..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 457899999999999999999999999999999996 489999999999999999999999999999999999
Q ss_pred cccCC
Q psy16184 179 RSRTV 183 (363)
Q Consensus 179 ~~~~~ 183 (363)
.+...
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87554
No 113
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=3.8e-18 Score=134.80 Aligned_cols=78 Identities=10% Similarity=0.056 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhC-CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYG-PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
..++|||+|||+.+|+++|+++|.+|| .|..|.|+. ..++|||||+|.+.++|++||..|||..|+|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 467999999999999999999999999 999998853 347899999999999999999999999999999999998
Q ss_pred ccc
Q psy16184 179 RSR 181 (363)
Q Consensus 179 ~~~ 181 (363)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 653
No 114
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=9.2e-19 Score=143.63 Aligned_cols=87 Identities=30% Similarity=0.582 Sum_probs=81.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|.|+.|.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecccCC
Q psy16184 177 VERSRTV 183 (363)
Q Consensus 177 ~a~~~~~ 183 (363)
++++...
T Consensus 123 ~a~~~~~ 129 (135)
T 2lea_A 123 MARYGRP 129 (135)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9986543
No 115
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.75 E-value=4e-20 Score=170.47 Aligned_cols=153 Identities=16% Similarity=0.234 Sum_probs=114.4
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCC--CCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFED--PKDTPPPTRVETREERLERRRRERAEQVAYKLEQE 84 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363)
.+|..+|.++|+|..+ .+..++.++.++|| +||.|.+.... +...+....+.++.+.+.
T Consensus 110 ~~l~~~f~~~G~i~~~-~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~----------------- 170 (284)
T 3smz_A 110 QQFEELVRPFGSLERC-FLVYSERTGQSKGY-GFAEYMKKDSAARAKSDLLGKPLGPRTLYVH----------------- 170 (284)
T ss_dssp HHHHHHHGGGSCEEEE-EEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTEECEEE-----------------
T ss_pred HHHHHHHHhcCCeeEE-EEEeeCCCCccceE-EEEEECCHHHHHHHHHHhCCCEeCCcEEEEE-----------------
Confidence 4689999999998877 35667888999999 99999664320 000111111111111110
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEcCCCCCC-CHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHh
Q psy16184 85 IALWDPNSFPNATMDPFKTLFIARVNYDT-SESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163 (363)
Q Consensus 85 ~~~~~p~~~~~~~~~~~~~l~V~nL~~~~-t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l 163 (363)
+...........+.++|||+|||+.+ |+++|.++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|+..|
T Consensus 171 ---~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l 246 (284)
T 3smz_A 171 ---WTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQA 246 (284)
T ss_dssp ---ECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHH
T ss_pred ---ECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHh
Confidence 00011112233467899999999995 999999999999999999999886 8999999999999999999999999
Q ss_pred CCceeCCEEEEEEeecccC
Q psy16184 164 DGKKIDGRRVLVDVERSRT 182 (363)
Q Consensus 164 ~g~~i~g~~i~V~~a~~~~ 182 (363)
||..|+|+.|.|.|+.+..
T Consensus 247 ~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 247 DGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp TTCEETTEECEEEECCSSS
T ss_pred CCCccCCeEEEEEEecCCC
Confidence 9999999999999997654
No 116
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.6e-18 Score=130.67 Aligned_cols=80 Identities=29% Similarity=0.498 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC--CEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKID--GRRVL 174 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~--g~~i~ 174 (363)
...+.++|||+|||+.+|+++|.++|.+||.|..|.|+.+ +|||||+|.+.++|++||..||+..|. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999999754 689999999999999999999999999 99999
Q ss_pred EEeecccC
Q psy16184 175 VDVERSRT 182 (363)
Q Consensus 175 V~~a~~~~ 182 (363)
|.++.++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998754
No 117
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.75 E-value=2.4e-20 Score=172.74 Aligned_cols=152 Identities=14% Similarity=0.196 Sum_probs=105.2
Q ss_pred hhhhhcCCCCC-CCCCCCCCCCCCCCCCCCCCccccccccccCC--CCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRD-PVPYLPPVEKLPHEKKTHGYSGIAAFLNEFED--PKDTPPPTRVETREERLERRRRERAEQVAYKLEQ 83 (363)
Q Consensus 7 ~~l~~~f~~~~-pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (363)
.+|..+|.++| +|..+. +..++. +.++|| +||.|.+.... +...+....+.++.+.+..
T Consensus 132 ~~l~~~f~~~G~~i~~v~-i~~~~~-~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~--------------- 193 (292)
T 2ghp_A 132 RNIRDLLQDINVVALSIR-LPSLRF-NTSRRF-AYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV--------------- 193 (292)
T ss_dssp HHHHHHHHHTTCCCCEEE-CC--------CCE-EEEECSSHHHHHHHHHHHTTCEETTEECEEEE---------------
T ss_pred HHHHHHHHHhCCCeEEEE-EEeCCC-CCcceE-EEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE---------------
Confidence 46899999999 888773 444443 789999 99998664321 1111222222222111110
Q ss_pred HHhhcCCCCCC---CCCCCCCCeEEEcCCCCC-CCHHHHHHHHHhhCCccEEEEeccCC-CCCcceEEEEEecCHHHHHH
Q psy16184 84 EIALWDPNSFP---NATMDPFKTLFIARVNYD-TSESKLRREFEVYGPIKKIVMVHNKV-TGKPRGYAFIEYEHERDMHS 158 (363)
Q Consensus 84 ~~~~~~p~~~~---~~~~~~~~~l~V~nL~~~-~t~~~L~~~F~~~G~i~~v~i~~d~~-t~~~~g~afV~f~~~~~a~~ 158 (363)
..|.... .....+.++|||+|||+. +|+++|.++|..||.|..|.|+.+.. ||.++|||||+|.+.++|.+
T Consensus 194 ----a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~ 269 (292)
T 2ghp_A 194 ----SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 269 (292)
T ss_dssp ----CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHH
T ss_pred ----CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHH
Confidence 0011000 022345789999999999 99999999999999999999998876 69999999999999999999
Q ss_pred HHHHhCCceeCCEEEEEEeeccc
Q psy16184 159 AYKHADGKKIDGRRVLVDVERSR 181 (363)
Q Consensus 159 Ai~~l~g~~i~g~~i~V~~a~~~ 181 (363)
|| .|||..|.|+.|.|.|+.++
T Consensus 270 A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 270 AL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HG-GGTTEEETTEEEEEEECCCC
T ss_pred HH-HhcCCEECCcEEEEEEecCC
Confidence 99 99999999999999999764
No 118
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.1e-18 Score=132.38 Aligned_cols=78 Identities=18% Similarity=0.367 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
+.++|||+|||+.+|+++|..+|.+||.|..|.|+.+ +|||||+|.+.++|..||..|||..|.|+.|.|.|+.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 4679999999999999999999999999999999875 6999999999999999999999999999999999998
Q ss_pred ccCC
Q psy16184 180 SRTV 183 (363)
Q Consensus 180 ~~~~ 183 (363)
+...
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7554
No 119
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=135.69 Aligned_cols=82 Identities=18% Similarity=0.351 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee--------C
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI--------D 169 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i--------~ 169 (363)
..+.++|||+|||+.+|+++|..+|..||.|..|.|+.++ ++.++|||||+|.+.++|..||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3457899999999999999999999999999999999997 999999999999999999999999999999 6
Q ss_pred CEEEEEEeecc
Q psy16184 170 GRRVLVDVERS 180 (363)
Q Consensus 170 g~~i~V~~a~~ 180 (363)
+++|.|.|+.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899999875
No 120
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.9e-18 Score=133.39 Aligned_cols=83 Identities=13% Similarity=0.213 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccE-EEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKK-IVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~-v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
...++|||+|||+.+|+++|+++|.+||.|.. |.|+.+ .+|.++|||||+|.+.++|.+||.. |+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45789999999999999999999999999987 888888 7999999999999999999999996 99999999999999
Q ss_pred ecccCC
Q psy16184 178 ERSRTV 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+.....
T Consensus 91 ~~~~~~ 96 (104)
T 1wg5_A 91 SSRAEV 96 (104)
T ss_dssp ECTTTS
T ss_pred CCHHHH
Confidence 876543
No 121
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=7.6e-20 Score=146.06 Aligned_cols=85 Identities=22% Similarity=0.362 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccE--------EEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKK--------IVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 170 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~--------v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g 170 (363)
.+.++|||+|||+.+++++|.++|.+||.|.. |.|+.++.++.++|||||+|.+.++|.+||..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35679999999999999999999999999998 8999998899999999999999999999999999999999
Q ss_pred EEEEEEeecccCC
Q psy16184 171 RRVLVDVERSRTV 183 (363)
Q Consensus 171 ~~i~V~~a~~~~~ 183 (363)
+.|.|.++.++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987543
No 122
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-17 Score=128.07 Aligned_cols=78 Identities=27% Similarity=0.535 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhh--CCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVY--GPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~--G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
..+.++|||+|||+.+|+++|+.+|.+| |.|..|.++ +|||||+|.+.++|.+||..|||..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4467899999999999999999999999 999998874 579999999999999999999999999999999
Q ss_pred EeecccCC
Q psy16184 176 DVERSRTV 183 (363)
Q Consensus 176 ~~a~~~~~ 183 (363)
.++.+...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987543
No 123
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.9e-17 Score=126.40 Aligned_cols=78 Identities=27% Similarity=0.481 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+. +||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45678999999999999999999999999999999964 4999999999999999999999999999999999
Q ss_pred ecccCC
Q psy16184 178 ERSRTV 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+.+...
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 977543
No 124
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=4.4e-18 Score=136.26 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCC---ccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGP---IKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~---i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
...++|||+|||+.+|+++|+++|..||. |..|.|+.++. |+++|||||+|.+.++|.+||. ||++.|+|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45689999999999999999999999999 89999999875 9999999999999999999999 9999999999999
Q ss_pred Eeeccc
Q psy16184 176 DVERSR 181 (363)
Q Consensus 176 ~~a~~~ 181 (363)
.++...
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 125
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=8.3e-19 Score=136.36 Aligned_cols=82 Identities=21% Similarity=0.361 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+|||+.+|+++|.++|..||.|.. .++.+..++.++|||||+|.+.++|.+||. |||..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45789999999999999999999999999988 666777789999999999999999999999 9999999999999999
Q ss_pred cccC
Q psy16184 179 RSRT 182 (363)
Q Consensus 179 ~~~~ 182 (363)
.++.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7644
No 126
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.5e-18 Score=128.87 Aligned_cols=78 Identities=22% Similarity=0.382 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCC-ccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCC-ceeCCEEEEEE
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGP-IKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADG-KKIDGRRVLVD 176 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~-i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g-~~i~g~~i~V~ 176 (363)
.+.++|||+|||+.+|+++|+++|.+||. |..+.|. ++|||||+|.+.++|.+||..||| ..|+|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45789999999999999999999999999 6666663 469999999999999999999999 99999999999
Q ss_pred eecccCC
Q psy16184 177 VERSRTV 183 (363)
Q Consensus 177 ~a~~~~~ 183 (363)
++.+...
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9987544
No 127
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=7.5e-18 Score=132.73 Aligned_cols=79 Identities=24% Similarity=0.436 Sum_probs=72.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
....+.++|||+|||+.+|+++|.++|.+||.|..|.|+ +|||||+|.+.++|.+||..|||..|+|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344567899999999999999999999999999999997 589999999999999999999999999999999
Q ss_pred EeecccC
Q psy16184 176 DVERSRT 182 (363)
Q Consensus 176 ~~a~~~~ 182 (363)
.++.+..
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 9997644
No 128
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=1.6e-18 Score=127.00 Aligned_cols=75 Identities=23% Similarity=0.454 Sum_probs=71.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 103 ~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
+|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|..||. +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999999 5999999999999875
No 129
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7.4e-18 Score=130.01 Aligned_cols=81 Identities=17% Similarity=0.327 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
.....++|||+|||+.+|+++|+.+|.+||.|. +.|+. +.++|||||+|.+.++|+.||..|||..|+|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344578999999999999999999999999997 66654 4578999999999999999999999999999999999
Q ss_pred eecccC
Q psy16184 177 VERSRT 182 (363)
Q Consensus 177 ~a~~~~ 182 (363)
++.+..
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 997643
No 130
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.74 E-value=1.2e-17 Score=129.01 Aligned_cols=79 Identities=22% Similarity=0.403 Sum_probs=71.2
Q ss_pred CCCCCCCCeEEEcCCCC-CCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEE
Q psy16184 95 NATMDPFKTLFIARVNY-DTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 173 (363)
Q Consensus 95 ~~~~~~~~~l~V~nL~~-~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 173 (363)
.....+.++|||+|||+ .+++++|..+|++||.|..|.|. +|||||+|.+.++|.+||..|||..|+|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455688999999998 99999999999999999999983 6899999999999999999999999999999
Q ss_pred EEEeeccc
Q psy16184 174 LVDVERSR 181 (363)
Q Consensus 174 ~V~~a~~~ 181 (363)
.|++++..
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998753
No 131
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-18 Score=140.75 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+|||+.+|+++|.++|..||.|..+.++.+..+|.++|||||+|.+.++|.+||. ||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456899999999999999999999999999986666776799999999999999999999999 9999999999999998
Q ss_pred ccc
Q psy16184 179 RSR 181 (363)
Q Consensus 179 ~~~ 181 (363)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 764
No 132
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=130.83 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCEEEEE
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADG--KKIDGRRVLV 175 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g--~~i~g~~i~V 175 (363)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+||..|++ ..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999764 69999999999999999998865 4599999999
Q ss_pred EeecccCC
Q psy16184 176 DVERSRTV 183 (363)
Q Consensus 176 ~~a~~~~~ 183 (363)
.|+..+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99987543
No 133
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.74 E-value=4e-18 Score=131.38 Aligned_cols=82 Identities=20% Similarity=0.374 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEE
Q psy16184 98 MDPFKTLFIARVNYDTSESKLR----REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 173 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~----~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 173 (363)
..++++|||+|||+.+++++|. ++|.+||.|..|.|+. ++.++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3467899999999999999999 9999999999998873 57788999999999999999999999999999999
Q ss_pred EEEeecccC
Q psy16184 174 LVDVERSRT 182 (363)
Q Consensus 174 ~V~~a~~~~ 182 (363)
.|.++.+..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999997643
No 134
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.7e-18 Score=131.47 Aligned_cols=77 Identities=23% Similarity=0.461 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 99 DPFKTLFIARVNY-DTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 99 ~~~~~l~V~nL~~-~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
.+.++|||+|||+ .+|+++|..+|.+||.|..|.|. +|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4678999999999 99999999999999999999994 58999999999999999999999999999999999
Q ss_pred ecccCC
Q psy16184 178 ERSRTV 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+.+...
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987543
No 135
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=7.8e-18 Score=130.81 Aligned_cols=76 Identities=32% Similarity=0.661 Sum_probs=72.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeeccc
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSR 181 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 181 (363)
++|||+|||+.+|+++|.++|++||.|..|.|+.+ ++|||||+|.+.++|.+||..|||..|.|+.|.|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999876 6799999999999999999999999999999999999875
Q ss_pred C
Q psy16184 182 T 182 (363)
Q Consensus 182 ~ 182 (363)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 136
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=125.08 Aligned_cols=76 Identities=26% Similarity=0.468 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+|||+.+|+++|..+|.+||.|..|.|+. +||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4578999999999999999999999999999999964 49999999999999999999999999999999999
Q ss_pred cccC
Q psy16184 179 RSRT 182 (363)
Q Consensus 179 ~~~~ 182 (363)
.+..
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7753
No 137
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=124.54 Aligned_cols=75 Identities=25% Similarity=0.481 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHh-CCceeCCEEEEEEe
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA-DGKKIDGRRVLVDV 177 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l-~g~~i~g~~i~V~~ 177 (363)
.+.++|||+|||+.+|+++|.++|.+||.|..|.|+.+ +|||||+|.+.++|..|+..| |+..|+|+.|.|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 45789999999999999999999999999999999864 699999999999999999998 99999999999999
Q ss_pred ec
Q psy16184 178 ER 179 (363)
Q Consensus 178 a~ 179 (363)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 138
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=7.4e-18 Score=132.76 Aligned_cols=78 Identities=15% Similarity=0.256 Sum_probs=72.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
..+|||+|||+.+|+++|+++|..| .|..|.|+.++. |+++|||||+|.+.++|.+|| .||+..|+|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4699999999999999999999999 899999999964 999999999999999999999 5999999999999998865
Q ss_pred c
Q psy16184 181 R 181 (363)
Q Consensus 181 ~ 181 (363)
.
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 139
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=128.62 Aligned_cols=81 Identities=22% Similarity=0.402 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+|+++|+.+|.+||.|..|.|+.+ +|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999999864 6999999999999999999999999999999999
Q ss_pred eecccCC
Q psy16184 177 VERSRTV 183 (363)
Q Consensus 177 ~a~~~~~ 183 (363)
++.+...
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpj_A 85 FACHSAS 91 (99)
T ss_dssp ESSCCSC
T ss_pred EcCCCCC
Confidence 9987543
No 140
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=4.8e-18 Score=139.15 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCC---ccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGP---IKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~---i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
...++|||+|||+.+|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|++||. ||+..|+|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 35679999999999999999999999999 89999999976 9999999999999999999999 9999999999999
Q ss_pred Eeeccc
Q psy16184 176 DVERSR 181 (363)
Q Consensus 176 ~~a~~~ 181 (363)
.++...
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 998653
No 141
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.73 E-value=4.2e-19 Score=163.47 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CEEEEEEe
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKID-GRRVLVDV 177 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~i~V~~ 177 (363)
.+.++|||+|||..+|+++|.++|..||.|..|.|+.+. +|||||+|.+.++|.+||..|||..|. |+.|.|.|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 356889999999999999999999999999999998653 589999999999999999999999999 99999999
Q ss_pred ec
Q psy16184 178 ER 179 (363)
Q Consensus 178 a~ 179 (363)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 85
No 142
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-18 Score=128.50 Aligned_cols=72 Identities=26% Similarity=0.434 Sum_probs=67.6
Q ss_pred CeEEEcCCCCCC------CHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCE-EEE
Q psy16184 102 KTLFIARVNYDT------SESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR-RVL 174 (363)
Q Consensus 102 ~~l~V~nL~~~~------t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~-~i~ 174 (363)
++|||+|||+.+ |+++|..+|++||.|..|.|+ +.+|.++|||||+|.+.++|..||..|||..|+|+ .|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999999999987 36899999999999999999999999999999999 887
Q ss_pred E
Q psy16184 175 V 175 (363)
Q Consensus 175 V 175 (363)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 143
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=1.1e-18 Score=143.47 Aligned_cols=82 Identities=12% Similarity=0.186 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
...++|||+|||+.+|+++|+++|.+|| |..|.|+.++. ++++|||||+|.+.++|++|| .||+..|.|+.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3467999999999999999999999999 77999999975 999999999999999999999 68999999999999998
Q ss_pred cccCC
Q psy16184 179 RSRTV 183 (363)
Q Consensus 179 ~~~~~ 183 (363)
.....
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 76543
No 144
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.1e-17 Score=129.87 Aligned_cols=75 Identities=17% Similarity=0.265 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
..++|||+|||+.+|+++|..+|..||.|..|.|+. ++|||||+|.+.++|..||..|||..|+|+.|.|.|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 357999999999999999999999999999999973 47999999999999999999999999999999999987
Q ss_pred c
Q psy16184 180 S 180 (363)
Q Consensus 180 ~ 180 (363)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 145
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=2.9e-17 Score=129.68 Aligned_cols=75 Identities=23% Similarity=0.469 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 99 DPFKTLFIARVNYD-TSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 99 ~~~~~l~V~nL~~~-~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
.+.++|||+|||+. +|+++|+++|.+||.|..|.| ++|||||+|.+.++|+.||..||+..|+|+.|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999999 468999999999999999999999999999999999
Q ss_pred eccc
Q psy16184 178 ERSR 181 (363)
Q Consensus 178 a~~~ 181 (363)
+...
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9753
No 146
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.73 E-value=1.2e-17 Score=143.19 Aligned_cols=84 Identities=21% Similarity=0.443 Sum_probs=79.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ecccC
Q psy16184 178 ERSRT 182 (363)
Q Consensus 178 a~~~~ 182 (363)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 97654
No 147
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.73 E-value=5.7e-18 Score=134.95 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEE-----EE
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR-----VL 174 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~-----i~ 174 (363)
..++|||+|||+.+|+++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||..|||..|+|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3579999999999999999999999999999999765 89999999999999999999999999998 66
Q ss_pred EEeecc
Q psy16184 175 VDVERS 180 (363)
Q Consensus 175 V~~a~~ 180 (363)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 666554
No 148
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.3e-18 Score=132.62 Aligned_cols=82 Identities=23% Similarity=0.299 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCEEE
Q psy16184 97 TMDPFKTLFIARVNYD-TSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD--GKKIDGRRV 173 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~-~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~--g~~i~g~~i 173 (363)
...++++|||+|||+. +|+++|.++|.+||.|..|.|+. .+|||||+|.+.++|..||..|| +..|.|+.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3557889999999998 99999999999999999999975 36999999999999999999886 456999999
Q ss_pred EEEeecccCCC
Q psy16184 174 LVDVERSRTVK 184 (363)
Q Consensus 174 ~V~~a~~~~~~ 184 (363)
.|.++......
T Consensus 95 ~V~~a~~~~~~ 105 (112)
T 1x4f_A 95 KVDLSEKYKKL 105 (112)
T ss_dssp EEEEECSCSSS
T ss_pred EEEECcccccc
Confidence 99999875543
No 149
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=126.23 Aligned_cols=78 Identities=17% Similarity=0.381 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
..++|||+|||+.+|+++|..+|.+||.|..| +.++.++. ||||+|.+.++|.+||. |||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 46799999999999999999999999999987 45555665 99999999999999999 99999999999999886
Q ss_pred ccCC
Q psy16184 180 SRTV 183 (363)
Q Consensus 180 ~~~~ 183 (363)
....
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 5443
No 150
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=1.5e-17 Score=132.31 Aligned_cols=81 Identities=25% Similarity=0.441 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.++++|||+|||+.+|+++|..+|+.||.|..|.|+.+ +.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45789999999999999999999999999999999865 456899999999999999999999999999999999999
Q ss_pred cccC
Q psy16184 179 RSRT 182 (363)
Q Consensus 179 ~~~~ 182 (363)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 7643
No 151
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=2.1e-17 Score=145.99 Aligned_cols=83 Identities=23% Similarity=0.440 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..|.++|||+|||+.+|+++|.++|++||.|..|.|+.++.|+.++|||||+|.+.++|..||..||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q psy16184 178 ERS 180 (363)
Q Consensus 178 a~~ 180 (363)
+..
T Consensus 92 ~~~ 94 (213)
T 4f02_A 92 SQR 94 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 152
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=9.2e-18 Score=129.11 Aligned_cols=80 Identities=26% Similarity=0.477 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|..+|..||.|..+ ..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999988766 25788999999999999999999999999999999999999
Q ss_pred ecccC
Q psy16184 178 ERSRT 182 (363)
Q Consensus 178 a~~~~ 182 (363)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 97643
No 153
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-18 Score=134.20 Aligned_cols=82 Identities=22% Similarity=0.210 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCC---ccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEE
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGP---IKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 174 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~---i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 174 (363)
....++|||+|||+.+|+++|.++|..||. |..|.|+.++. |.++|||||+|.+.++|.+||. ||+..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345789999999999999999999999988 89999999976 9999999999999999999999 999999999999
Q ss_pred EEeeccc
Q psy16184 175 VDVERSR 181 (363)
Q Consensus 175 V~~a~~~ 181 (363)
|.++.+.
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998754
No 154
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.72 E-value=4.5e-18 Score=140.87 Aligned_cols=85 Identities=22% Similarity=0.352 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEE--Ee---ccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEE
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIV--MV---HNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 172 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~--i~---~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 172 (363)
..++++|||+|||+.+|+++|..+|..||.|..|. ++ ....++.++|||||+|.+.++|.+||..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45678999999999999999999999999998741 11 11247889999999999999999999999999999999
Q ss_pred EEEEeecccC
Q psy16184 173 VLVDVERSRT 182 (363)
Q Consensus 173 i~V~~a~~~~ 182 (363)
|.|.++++..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997643
No 155
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.4e-17 Score=132.41 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=71.5
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecC----HHH----HHHHHH--HhCCce
Q psy16184 102 KTLFIARV----NYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEH----ERD----MHSAYK--HADGKK 167 (363)
Q Consensus 102 ~~l~V~nL----~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~----~~~----a~~Ai~--~l~g~~ 167 (363)
++|||+|| |+.|++.+|+++|+.||+|..|.++.|+.||.++|||||+|.+ ++. |..||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999995 333 788888 789999
Q ss_pred eCCEEEEEEeec
Q psy16184 168 IDGRRVLVDVER 179 (363)
Q Consensus 168 i~g~~i~V~~a~ 179 (363)
|+|+.|.|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999864
No 156
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-16 Score=123.44 Aligned_cols=78 Identities=24% Similarity=0.442 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|| .+|+++|+.+|.+||.|..|.|. .++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 446789999996 89999999999999999999985 3579999999999999999999999999999999999
Q ss_pred ecccCC
Q psy16184 178 ERSRTV 183 (363)
Q Consensus 178 a~~~~~ 183 (363)
+.+...
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 987554
No 157
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=133.19 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCc----cEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPI----KKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i----~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
..++|||+|||+.+|+++|+++|++||.| ..|.|+.+ .+|+++|||||+|.+.++|++||.. |+..|.|+.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 35799999999999999999999999975 68999988 5899999999999999999999995 999999999999
Q ss_pred Eeeccc
Q psy16184 176 DVERSR 181 (363)
Q Consensus 176 ~~a~~~ 181 (363)
..+...
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988653
No 158
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.9e-17 Score=128.31 Aligned_cols=81 Identities=17% Similarity=0.328 Sum_probs=72.1
Q ss_pred CCCCCCCeEEE--cCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee-----
Q psy16184 96 ATMDPFKTLFI--ARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI----- 168 (363)
Q Consensus 96 ~~~~~~~~l~V--~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i----- 168 (363)
....|+.+||| |||++.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|+..|||..|
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 33456889999 779999999999999999999999988643 69999999999999999999999998
Q ss_pred CCEEEEEEeecccC
Q psy16184 169 DGRRVLVDVERSRT 182 (363)
Q Consensus 169 ~g~~i~V~~a~~~~ 182 (363)
.|.+|.|.++...+
T Consensus 94 ~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 94 QKITLYLNFVEKVQ 107 (114)
T ss_dssp CEEECEEEEESCCC
T ss_pred CCcEEEEEecccCc
Confidence 78999999997543
No 159
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=1.4e-17 Score=129.69 Aligned_cols=80 Identities=19% Similarity=0.498 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
+.++|||+|||+.+|+++|..+|..||.|..|.|+.++ ++.++|||||+|.+.++|.+||. ++..|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 46799999999999999999999999999999999998 99999999999999999999998 9999999999999987
Q ss_pred ccC
Q psy16184 180 SRT 182 (363)
Q Consensus 180 ~~~ 182 (363)
.+.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 643
No 160
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.70 E-value=5.2e-17 Score=135.53 Aligned_cols=80 Identities=28% Similarity=0.601 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+|+++|.++|.+||.|..|.|+.+ ++|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999876 57999999999999999999999999999999999
Q ss_pred eeccc
Q psy16184 177 VERSR 181 (363)
Q Consensus 177 ~a~~~ 181 (363)
++.++
T Consensus 144 ~a~~~ 148 (150)
T 2i2y_A 144 LSNGE 148 (150)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99764
No 161
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.5e-17 Score=128.89 Aligned_cols=76 Identities=11% Similarity=0.220 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
.++|||+|||+.+|+++|+.+|.+||.|..|.|+. .+|||||+|.+.++|..||..|||..|.|+.|.|+|+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 57999999999999999999999999999998864 468999999999999999999999999999999999976
Q ss_pred cC
Q psy16184 181 RT 182 (363)
Q Consensus 181 ~~ 182 (363)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 162
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=6.8e-17 Score=124.20 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEE-EEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKI-VMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v-~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
...++|||+|||+.+|+++|..+|.+||.|..| .|+.++.++ .|||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346899999999999999999999999999999 587775443 499999999999999999999999999999999
Q ss_pred eccc
Q psy16184 178 ERSR 181 (363)
Q Consensus 178 a~~~ 181 (363)
+.+.
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9875
No 163
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.69 E-value=2e-18 Score=151.73 Aligned_cols=78 Identities=9% Similarity=0.170 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCc--cEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCE----E
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPI--KKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR----R 172 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i--~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~----~ 172 (363)
.|+++|||+|||+.+|+++|+++|++||.| ..|.|+.+. +..+|||||+|.+.++|..||..|||..|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 467899999999999999999999999999 899998764 55679999999999999999999999999887 5
Q ss_pred EEEEee
Q psy16184 173 VLVDVE 178 (363)
Q Consensus 173 i~V~~a 178 (363)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777775
No 164
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.69 E-value=3.2e-17 Score=151.00 Aligned_cols=138 Identities=17% Similarity=0.278 Sum_probs=105.6
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCC--CCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDP--KDTPPPTRVETREERLERRRRERAEQVAYKLEQE 84 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363)
.+|..+|..+| |..+. + ++++|| +||.|.+..... ...+....+.+
T Consensus 37 ~~l~~~F~~~G-i~~~~-~------~~~~g~-afV~f~~~~~A~~A~~~l~~~~~~g----------------------- 84 (284)
T 3smz_A 37 QEVHDLLSDYE-LKYCF-V------DKYKGT-AFVTLLNGEQAEAAINAFHQSRLRE----------------------- 84 (284)
T ss_dssp HHHHHHTTTSC-EEEEE-E------ETTTTE-EEEEESSHHHHHHHHHHHTTCEETT-----------------------
T ss_pred HHHHHHHHHcC-CEEEE-E------ecCCCE-EEEEeCCHHHHHHHHHHcCCCeeCC-----------------------
Confidence 46999999999 66552 2 678899 899985543100 00001111111
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy16184 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 85 ~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
....-....+.++|||+|||+.+|+++|.++|..||.|..|.|+.+..+|.++|||||+|.+.++|..|+..||
T Consensus 85 ------~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 85 ------RELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp ------EECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ------eEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 00001112346799999999999999999999999999999999998899999999999999999999999999
Q ss_pred CceeCCEEEEEEeecccC
Q psy16184 165 GKKIDGRRVLVDVERSRT 182 (363)
Q Consensus 165 g~~i~g~~i~V~~a~~~~ 182 (363)
|..|+|+.|.|.++.+..
T Consensus 159 ~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 159 GKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp TCEETTEECEEEECCGGG
T ss_pred CCEeCCcEEEEEECCCCC
Confidence 999999999999997654
No 165
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=1.4e-16 Score=134.22 Aligned_cols=81 Identities=22% Similarity=0.461 Sum_probs=77.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred c
Q psy16184 181 R 181 (363)
Q Consensus 181 ~ 181 (363)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 166
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=1.6e-18 Score=160.34 Aligned_cols=141 Identities=15% Similarity=0.171 Sum_probs=102.4
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCC-CCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFED-PKDTPPPTRVETREERLERRRRERAEQVAYKLEQEI 85 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (363)
.+|..+|..+|+|..+. +..++. .++|| +||.|.+.... .+..+....+.++.+.+
T Consensus 56 ~~l~~~F~~~G~i~~v~-i~~~~~--~~~g~-afV~f~~~~~A~~A~~~~~~~~~g~~i~v------------------- 112 (292)
T 2ghp_A 56 NKVYKYFKHCGPIIHVD-VADSLK--KNFRF-ARIEFARYDGALAAITKTHKVVGQNEIIV------------------- 112 (292)
T ss_dssp HHHHHHHGGGSCEEEEE-EEECTT--SSSEE-EEEEESSHHHHHHHHTTTTCEETTEECEE-------------------
T ss_pred HHHHHHHHhcCCeEEEE-EEECCC--CCcEE-EEEEECCHHHHHHHHHhCCcEeCCcEEEE-------------------
Confidence 46999999999998773 444443 25799 89998664321 01112222222211111
Q ss_pred hhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhC-CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy16184 86 ALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYG-PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 86 ~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
.....++|||+|||+.+|+++|.++|..|| .|..|.|+.+.. +.++|||||+|.+.++|..||..||
T Consensus 113 -----------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~ 180 (292)
T 2ghp_A 113 -----------SHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLN 180 (292)
T ss_dssp -----------EECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHT
T ss_pred -----------EECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhC
Confidence 112477999999999999999999999999 999999988864 8889999999999999999999999
Q ss_pred CceeCCEEEEEEeecccC
Q psy16184 165 GKKIDGRRVLVDVERSRT 182 (363)
Q Consensus 165 g~~i~g~~i~V~~a~~~~ 182 (363)
|..|.|+.|.|.++.+..
T Consensus 181 g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 181 GLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp TCEETTEECEEEECCCC-
T ss_pred CCEeCCcEEEEEECCCCc
Confidence 999999999999987643
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.1e-16 Score=135.38 Aligned_cols=83 Identities=25% Similarity=0.434 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred ccC
Q psy16184 180 SRT 182 (363)
Q Consensus 180 ~~~ 182 (363)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 168
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=1.2e-16 Score=120.82 Aligned_cols=76 Identities=11% Similarity=0.214 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
..++|||+|||+.+++++|+++|.+| .|..|.|. .++|||||+|.+.++|..||..|||..|.|+.|.|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46799999999999999999999999 99999985 468999999999999999999999999999999999986
Q ss_pred ccC
Q psy16184 180 SRT 182 (363)
Q Consensus 180 ~~~ 182 (363)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 169
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.68 E-value=5.5e-18 Score=147.70 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhC-CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CEEEEEE
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYG-PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKID-GRRVLVD 176 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~i~V~ 176 (363)
.+.++|||+|||..+|+++|.++|..|| .|..|.|+.+ .+|||||+|.+.++|.+|+..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4588999999999999999999999999 9999999654 2699999999999999999999999999 9999999
Q ss_pred eeccc
Q psy16184 177 VERSR 181 (363)
Q Consensus 177 ~a~~~ 181 (363)
|+++.
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99763
No 170
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=119.21 Aligned_cols=75 Identities=20% Similarity=0.331 Sum_probs=66.6
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHHhh-CCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEE
Q psy16184 99 DPFKT-LFIARVNYDTSESK----LRREFEVY-GPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 172 (363)
Q Consensus 99 ~~~~~-l~V~nL~~~~t~~~----L~~~F~~~-G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 172 (363)
+|+.| |||+|||+.+++++ |.++|.+| |.|..| |+ |||||.|.+.++|..|++.|||..|.|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 45666 99999999999987 55899999 599887 33 99999999999999999999999999999
Q ss_pred EEEEeecccCC
Q psy16184 173 VLVDVERSRTV 183 (363)
Q Consensus 173 i~V~~a~~~~~ 183 (363)
|.|.+|+....
T Consensus 76 i~v~~A~~~sd 86 (96)
T 2diu_A 76 IIVSFTPKNRE 86 (96)
T ss_dssp CEEESSCCSCC
T ss_pred EEEEecCCCcc
Confidence 99999987543
No 171
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=3.8e-17 Score=131.84 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCcc--EEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIK--KIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~--~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...++|||+|||+.+|+++|+++|+.| .|. .|.|+.++. |.++|||||+|.+.++|.+||. +++..|+|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 456799999999999999999999999 677 899999976 9999999999999999999999 57899999999999
Q ss_pred eeccc
Q psy16184 177 VERSR 181 (363)
Q Consensus 177 ~a~~~ 181 (363)
++...
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88653
No 172
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=124.91 Aligned_cols=78 Identities=21% Similarity=0.410 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCC---CCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVT---GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t---~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
...++|||+|||+.+|+++|+++|.+||.|. +.++.+..+ |.++|||||+|.+.++|++||..|+ .|+|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3468999999999999999999999999999 888888777 7999999999999999999999984 377777777
Q ss_pred Eeec
Q psy16184 176 DVER 179 (363)
Q Consensus 176 ~~a~ 179 (363)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6544
No 173
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.66 E-value=6.9e-17 Score=147.20 Aligned_cols=140 Identities=18% Similarity=0.261 Sum_probs=102.0
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKDTPPPTRVETREERLERRRRERAEQVAYKLEQEIA 86 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (363)
.+|..+|.++|+|..+. + .+++|| +||.|.+.... +. +. ......
T Consensus 37 ~~l~~~F~~~G~i~~v~-i------~~~kg~-afV~f~~~~~A-----------------~~---------A~-~~l~g~ 81 (261)
T 3sde_A 37 EDFKRLFERYGEPSEVF-I------NRDRGF-GFIRLESRTLA-----------------EI---------AK-AELDGT 81 (261)
T ss_dssp HHHHHHTGGGCCCSEEE-E------ETTTTE-EEEECSSHHHH-----------------HH---------HH-HHHTTC
T ss_pred HHHHHHHHhcCCEEEEE-E------eCCCcE-EEEEECCHHHH-----------------HH---------HH-HHcCCc
Confidence 45899999999988763 2 346799 88988553210 00 00 000000
Q ss_pred hcCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC-C
Q psy16184 87 LWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD-G 165 (363)
Q Consensus 87 ~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~-g 165 (363)
........-....+..+|||+|||+.+|+++|.++|..||.|..|.|+.+ .+|.++|||||+|.+.++|.+||..|| +
T Consensus 82 ~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 82 ILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp EETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred EECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 01100011111234679999999999999999999999999999999999 589999999999999999999999994 5
Q ss_pred ceeC---CEEEEEEeecccC
Q psy16184 166 KKID---GRRVLVDVERSRT 182 (363)
Q Consensus 166 ~~i~---g~~i~V~~a~~~~ 182 (363)
..+. +++|.|.++....
T Consensus 161 ~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 161 AFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp CEESSSSCCBCEEEECCCEE
T ss_pred eEEecCCCceEEEeeccccC
Confidence 5555 9999999997643
No 174
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.66 E-value=3.9e-16 Score=126.00 Aligned_cols=77 Identities=17% Similarity=0.341 Sum_probs=70.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceE-EEEEecCHHHHHHHHHHhCCceeCC--EEEEEEe
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGY-AFIEYEHERDMHSAYKHADGKKIDG--RRVLVDV 177 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~-afV~f~~~~~a~~Ai~~l~g~~i~g--~~i~V~~ 177 (363)
...|||+||++.+|+++|.++|++||.|..|.|+.. .+|| |||+|.+.++|..|+..|||..|.| +.|.|+|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 457889999999999999999999999999988754 3688 9999999999999999999999988 9999999
Q ss_pred ecccC
Q psy16184 178 ERSRT 182 (363)
Q Consensus 178 a~~~~ 182 (363)
++...
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 98754
No 175
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=2.7e-16 Score=119.32 Aligned_cols=75 Identities=20% Similarity=0.398 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCce--eCCEEEEEE
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKK--IDGRRVLVD 176 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~--i~g~~i~V~ 176 (363)
.+.++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+ |++.. +.|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 45789999999999999999999999999999999874 68999999999999883 45554 569999999
Q ss_pred eecccC
Q psy16184 177 VERSRT 182 (363)
Q Consensus 177 ~a~~~~ 182 (363)
++.++.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 997643
No 176
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=3e-16 Score=131.37 Aligned_cols=78 Identities=17% Similarity=0.298 Sum_probs=70.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--EEEEEEee
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDG--RRVLVDVE 178 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g--~~i~V~~a 178 (363)
..+|||+||++.+|+++|+++|++||.|..|.|... .++|||||+|.+.++|..|+..|||..|.| +.|.|+|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 457999999999999999999999999999998643 257899999999999999999999999965 99999999
Q ss_pred cccC
Q psy16184 179 RSRT 182 (363)
Q Consensus 179 ~~~~ 182 (363)
++..
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8754
No 177
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=4.3e-16 Score=135.04 Aligned_cols=82 Identities=28% Similarity=0.584 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4578999999999999999999999999999999999999999999999999999999999985 999999999999998
Q ss_pred ccc
Q psy16184 179 RSR 181 (363)
Q Consensus 179 ~~~ 181 (363)
...
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 654
No 178
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=7.4e-16 Score=120.48 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHHHhhCCccEEEEeccCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCEE
Q psy16184 99 DPFKTLFIARVNY-----DTSESKLRREFEVYGPIKKIVMVHNKVT-GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 172 (363)
Q Consensus 99 ~~~~~l~V~nL~~-----~~t~~~L~~~F~~~G~i~~v~i~~d~~t-~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 172 (363)
.++++|+|.||.. ..++++|+++|++||.|..|.|+.++.+ +.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 2378999999999999999999988654 688999999999999999999999999999999
Q ss_pred EEEEeecc
Q psy16184 173 VLVDVERS 180 (363)
Q Consensus 173 i~V~~a~~ 180 (363)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 179
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-16 Score=119.50 Aligned_cols=78 Identities=21% Similarity=0.358 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+|||+.+|+++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|..|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35689999999999999999999999999999999764 689999999999999865332 35569999999999
Q ss_pred cccCC
Q psy16184 179 RSRTV 183 (363)
Q Consensus 179 ~~~~~ 183 (363)
.++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77543
No 180
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.65 E-value=9.6e-18 Score=149.91 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhC-CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CEEEEEE
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYG-PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKID-GRRVLVD 176 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G-~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-g~~i~V~ 176 (363)
.+.++|||+|||+.+|+++|.++|..|| .|..|.|+.+ .+|||||+|.+.++|.+||..|||..|. |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999999653 3689999999999999999999999999 9999999
Q ss_pred eeccc
Q psy16184 177 VERSR 181 (363)
Q Consensus 177 ~a~~~ 181 (363)
|+++.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99763
No 181
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=5.6e-16 Score=116.66 Aligned_cols=71 Identities=17% Similarity=0.443 Sum_probs=66.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhh----C-------CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVY----G-------PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI 168 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~----G-------~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 168 (363)
+.++|||+|||+.+|+++|+++|.+| | .|..+.++.+ +|||||+|.+.++|.+|| .|||..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 46799999999999999999999999 8 8999998754 699999999999999999 8999999
Q ss_pred CCEEEEEEe
Q psy16184 169 DGRRVLVDV 177 (363)
Q Consensus 169 ~g~~i~V~~ 177 (363)
.|+.|.|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 182
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=5.9e-16 Score=124.33 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=67.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceE-EEEEecCHHHHHHHHHHhCCceeCC--EEEEEEeec
Q psy16184 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGY-AFIEYEHERDMHSAYKHADGKKIDG--RRVLVDVER 179 (363)
Q Consensus 103 ~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~-afV~f~~~~~a~~Ai~~l~g~~i~g--~~i~V~~a~ 179 (363)
.|||+||++.+|+++|.++|++||.|..|.|+.. .|| |||+|.+.++|..|+..|||..|.| +.|.|++|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4689999999999999999999999999999642 286 9999999999999999999999988 699999998
Q ss_pred ccC
Q psy16184 180 SRT 182 (363)
Q Consensus 180 ~~~ 182 (363)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 754
No 183
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.64 E-value=6.7e-16 Score=135.59 Aligned_cols=79 Identities=16% Similarity=0.285 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 99 DPFKTLFIARVN-YDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 99 ~~~~~l~V~nL~-~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
.++++|||+||+ +.+|+++|.++|++||.|..|.|+.+ .+|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 89999999999999999999999875 379999999999999999999999999999999999
Q ss_pred ecccC
Q psy16184 178 ERSRT 182 (363)
Q Consensus 178 a~~~~ 182 (363)
++...
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 97543
No 184
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=6.7e-16 Score=124.00 Aligned_cols=77 Identities=25% Similarity=0.459 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEee
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 178 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a 178 (363)
.+.++|||+|| .+|+++|..+|++||.|..|.|+ .++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45789999996 69999999999999999999996 35799999999999999999999999999999999999
Q ss_pred cccCC
Q psy16184 179 RSRTV 183 (363)
Q Consensus 179 ~~~~~ 183 (363)
.+...
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87543
No 185
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.6e-15 Score=127.65 Aligned_cols=80 Identities=28% Similarity=0.512 Sum_probs=74.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeeccc
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSR 181 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~~ 181 (363)
++|||+|||+.+|+++|.++|++||.|..|.|+.++ ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999886 5779999999999999999999999999999999999998764
Q ss_pred C
Q psy16184 182 T 182 (363)
Q Consensus 182 ~ 182 (363)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 186
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.62 E-value=9.3e-16 Score=135.03 Aligned_cols=80 Identities=29% Similarity=0.572 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
.++|||+|||+.+|+++|.++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 46999999999999999999999999999999999988999999999999999999999999999999999999988754
No 187
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=3e-15 Score=130.09 Aligned_cols=78 Identities=14% Similarity=0.241 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeecc
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~~ 180 (363)
.++|||+|||+.+|+++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..+ +..|+|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4699999999999999999999999999999999885 5899999999999999999999865 5699999999998764
No 188
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=2.9e-15 Score=127.21 Aligned_cols=82 Identities=20% Similarity=0.340 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCC--CcceEEEEEecCHHHHHHHHHHhCCceeC---CEEEE
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTG--KPRGYAFIEYEHERDMHSAYKHADGKKID---GRRVL 174 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~--~~~g~afV~f~~~~~a~~Ai~~l~g~~i~---g~~i~ 174 (363)
..++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++ .++|||||+|.+.++|..|+..||+..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 36799999999999999999999999999999999998777 89999999999999999999999998776 67788
Q ss_pred EEeeccc
Q psy16184 175 VDVERSR 181 (363)
Q Consensus 175 V~~a~~~ 181 (363)
|.++...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8887654
No 189
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.59 E-value=1.7e-15 Score=127.84 Aligned_cols=79 Identities=25% Similarity=0.531 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||.. +..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 357999999999999999999999999999999999988999999999999999999999994 679999999999876
Q ss_pred c
Q psy16184 180 S 180 (363)
Q Consensus 180 ~ 180 (363)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.58 E-value=6.1e-15 Score=135.52 Aligned_cols=82 Identities=20% Similarity=0.376 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEE
Q psy16184 98 MDPFKTLFIARVNYDTSESKLR----REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 173 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~----~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 173 (363)
..+.++|||+|||+.+|+++|+ ++|..||.|..|.|+. ++.++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568899999999999999966 8999999999999875 78899999999999999999999999999999999
Q ss_pred EEEeecccC
Q psy16184 174 LVDVERSRT 182 (363)
Q Consensus 174 ~V~~a~~~~ 182 (363)
.|.|+....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997643
No 191
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.58 E-value=2.4e-15 Score=134.14 Aligned_cols=79 Identities=20% Similarity=0.357 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee-
Q psy16184 99 DPFKTLFIARVNYDT---------SESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI- 168 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~---------t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i- 168 (363)
...++|||+||+..+ ++++|..+|++||.|..|.|+.+ +|||||+|.+.++|+.|+.+|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 457899999999998 79999999999999999999864 69999999999999999999999999
Q ss_pred -----------CCEEEEEEeecccCC
Q psy16184 169 -----------DGRRVLVDVERSRTV 183 (363)
Q Consensus 169 -----------~g~~i~V~~a~~~~~ 183 (363)
.|+.|.|.||...+.
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 192
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.3e-14 Score=113.41 Aligned_cols=83 Identities=19% Similarity=0.368 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q psy16184 97 TMDPFKTLFIARVNYDTS-----------ESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADG 165 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t-----------~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g 165 (363)
...++++|+|.||..... +++|.++|++||.|..|.| .++ .++|||||+|.+.++|.+||..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445688999999954432 5899999999999999966 443 3789999999999999999999999
Q ss_pred ceeCCEEEEEEeecccCC
Q psy16184 166 KKIDGRRVLVDVERSRTV 183 (363)
Q Consensus 166 ~~i~g~~i~V~~a~~~~~ 183 (363)
..|+|+.|.|.++.+...
T Consensus 87 ~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CEETTEECEEEECCSCCC
T ss_pred CEECCcEEEEEEeCCCCC
Confidence 999999999999977543
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=5.9e-15 Score=131.68 Aligned_cols=80 Identities=19% Similarity=0.397 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 97 TMDPFKTLFIARVNY-DTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~-~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
...++++|||+|||+ .+|+++|.++|+.||.|..|.|+.++ +|||||+|.+.++|.+||..|||..|.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345688999999999 99999999999999999999998774 789999999999999999999999999999999
Q ss_pred Eeeccc
Q psy16184 176 DVERSR 181 (363)
Q Consensus 176 ~~a~~~ 181 (363)
.++...
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 999764
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.54 E-value=2e-14 Score=112.30 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCC--CCC--------CHHHHHHHHHhhCCccEEEEeccCCC--CCcceEEEEEecCHHHHHHHHHHhCCc
Q psy16184 99 DPFKTLFIARVN--YDT--------SESKLRREFEVYGPIKKIVMVHNKVT--GKPRGYAFIEYEHERDMHSAYKHADGK 166 (363)
Q Consensus 99 ~~~~~l~V~nL~--~~~--------t~~~L~~~F~~~G~i~~v~i~~d~~t--~~~~g~afV~f~~~~~a~~Ai~~l~g~ 166 (363)
.|++.|.|.||- ..+ .+++|+++|++||.|..|.|+.+..+ +.++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 468899999983 333 23789999999999999999988654 467999999999999999999999999
Q ss_pred eeCCEEEEEEeecc
Q psy16184 167 KIDGRRVLVDVERS 180 (363)
Q Consensus 167 ~i~g~~i~V~~a~~ 180 (363)
.|+|+.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999864
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.53 E-value=5.6e-15 Score=125.77 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
...+.++|||+|||+.+|+++|+++|..||.|.. .++.+..++.++|||||+|.+.++|.+||+ |||..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3446789999999999999999999999998776 334555678899999999999999999995 99999999999999
Q ss_pred eeccc
Q psy16184 177 VERSR 181 (363)
Q Consensus 177 ~a~~~ 181 (363)
++...
T Consensus 87 ~~~~~ 91 (175)
T 1fje_B 87 KPKGR 91 (175)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98764
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.51 E-value=1.7e-14 Score=125.50 Aligned_cols=77 Identities=19% Similarity=0.435 Sum_probs=72.1
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEeec
Q psy16184 101 FKTLFIARVNY-DTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179 (363)
Q Consensus 101 ~~~l~V~nL~~-~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~a~ 179 (363)
.++|||+|||+ .+|+++|.++|+.||.|..|.|+.++ +|||||+|.+.++|..||..|||..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998764 7899999999999999999999999999999999997
Q ss_pred ccC
Q psy16184 180 SRT 182 (363)
Q Consensus 180 ~~~ 182 (363)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.51 E-value=8.1e-15 Score=114.38 Aligned_cols=73 Identities=14% Similarity=0.352 Sum_probs=64.8
Q ss_pred EEcCCCCCCCHHHHHHHH------------HhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEE
Q psy16184 105 FIARVNYDTSESKLRREF------------EVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 172 (363)
Q Consensus 105 ~V~nL~~~~t~~~L~~~F------------~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 172 (363)
.+.||++.+++++|+++| ++||.|..|.|+.+. +++++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 367788888888887776 999999999999875 5789999999999999999999999999999999
Q ss_pred EEEEee
Q psy16184 173 VLVDVE 178 (363)
Q Consensus 173 i~V~~a 178 (363)
|.|.++
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.51 E-value=4.4e-14 Score=112.54 Aligned_cols=81 Identities=17% Similarity=0.358 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCC--C---CCHHHHHHHHHhhCCccEEEEeccCC----CCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy16184 100 PFKTLFIARVNY--D---TSESKLRREFEVYGPIKKIVMVHNKV----TGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 170 (363)
Q Consensus 100 ~~~~l~V~nL~~--~---~t~~~L~~~F~~~G~i~~v~i~~d~~----t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g 170 (363)
++++|+|.||-. . -.+++|++.|++||.|..|.|+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 478999999842 1 23689999999999999999998764 45778999999999999999999999999999
Q ss_pred EEEEEEeecc
Q psy16184 171 RRVLVDVERS 180 (363)
Q Consensus 171 ~~i~V~~a~~ 180 (363)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=8.3e-14 Score=126.73 Aligned_cols=77 Identities=23% Similarity=0.413 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEEe
Q psy16184 98 MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 177 (363)
Q Consensus 98 ~~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~~ 177 (363)
..+.++|||+|||+.+|+++|..+|..||.|..|.|..+ +|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345679999999999999999999999999999999654 69999999999999999999999999999999999
Q ss_pred ecc
Q psy16184 178 ERS 180 (363)
Q Consensus 178 a~~ 180 (363)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 865
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.44 E-value=3e-13 Score=114.50 Aligned_cols=75 Identities=16% Similarity=0.402 Sum_probs=66.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhh----C-------CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVY----G-------PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI 168 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~----G-------~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 168 (363)
+.++|||+|||+.+|+++|.++|++| | .|..+.+.. ++|||||+|.+.++|.+|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46799999999999999999999999 6 666666644 4799999999999999999 7999999
Q ss_pred CCEEEEEEeeccc
Q psy16184 169 DGRRVLVDVERSR 181 (363)
Q Consensus 169 ~g~~i~V~~a~~~ 181 (363)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987653
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=8.5e-13 Score=101.88 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=63.5
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEE
Q psy16184 101 FKTLFIARVN-------YDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 173 (363)
Q Consensus 101 ~~~l~V~nL~-------~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i 173 (363)
...|.|.-.. ..+|+++|+++|.+||.|..|.|+ +.++|||||+|.+.++|..||..+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4466665433 468999999999999999999997 35789999999999999999997554 679999
Q ss_pred EEEeecccCC
Q psy16184 174 LVDVERSRTV 183 (363)
Q Consensus 174 ~V~~a~~~~~ 183 (363)
.|.|+.+...
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999977543
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.43 E-value=3.8e-13 Score=116.56 Aligned_cols=75 Identities=15% Similarity=0.357 Sum_probs=65.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhC-----------CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEVYG-----------PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI 168 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~~G-----------~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 168 (363)
..++|||+|||+.+|+++|.++|..|| .|..+.+ +.++|||||+|.+.++|.+|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 367999999999999999999999994 4455544 445799999999999999999 7999999
Q ss_pred CCEEEEEEeeccc
Q psy16184 169 DGRRVLVDVERSR 181 (363)
Q Consensus 169 ~g~~i~V~~a~~~ 181 (363)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998764
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=4e-13 Score=125.99 Aligned_cols=80 Identities=19% Similarity=0.359 Sum_probs=68.0
Q ss_pred CCCCCCCCCeEEEcC--CCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC--
Q psy16184 94 PNATMDPFKTLFIAR--VNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKID-- 169 (363)
Q Consensus 94 ~~~~~~~~~~l~V~n--L~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~-- 169 (363)
......|+.+||||| |++.+|+++|+++|++||+|..|.|+. .+|||||+|.+.++|++||..|||..+.
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 344566889999999 578999999999999999999987754 4699999999999999999999999883
Q ss_pred -CE--EEEEEeec
Q psy16184 170 -GR--RVLVDVER 179 (363)
Q Consensus 170 -g~--~i~V~~a~ 179 (363)
|+ .|.|.++.
T Consensus 85 ~g~~~~ly~~~~~ 97 (345)
T 3tht_A 85 LGQKITLYLNFVE 97 (345)
T ss_dssp TSCEEECEEEECS
T ss_pred cCCceEEEEEEee
Confidence 44 57777764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=2.5e-12 Score=101.68 Aligned_cols=78 Identities=10% Similarity=0.121 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy16184 99 DPFKTLFIARVNYDT----------SESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI 168 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~----------t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i 168 (363)
.+++.|.|.||-... .+++|++.|++||.|..|.|+.+. .+|||||+|.+.++|.+|+..|||..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 357789999974321 236889999999999999997653 589999999999999999999999999
Q ss_pred CCEEEEEEeecc
Q psy16184 169 DGRRVLVDVERS 180 (363)
Q Consensus 169 ~g~~i~V~~a~~ 180 (363)
+|+.|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999864
No 205
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.22 E-value=4.1e-11 Score=116.67 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=12.8
Q ss_pred EEEEEecCHHHHHHHHHH--hCCcee
Q psy16184 145 YAFIEYEHERDMHSAYKH--ADGKKI 168 (363)
Q Consensus 145 ~afV~f~~~~~a~~Ai~~--l~g~~i 168 (363)
+.|........|..+|.. |+|..|
T Consensus 149 V~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 149 IEYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred EeeccHHHHHHHHHHcCCCEECCEEE
Confidence 445555666666655442 455444
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=3.9e-11 Score=89.35 Aligned_cols=74 Identities=12% Similarity=0.260 Sum_probs=63.2
Q ss_pred CCCCCeEEEcCCC----CCCCH----HHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy16184 98 MDPFKTLFIARVN----YDTSE----SKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKID 169 (363)
Q Consensus 98 ~~~~~~l~V~nL~----~~~t~----~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~ 169 (363)
.+|..||+|.-++ .++.. .+|.+.|.+||.|..++|+.+ .+||+|.+.++|.+||. |||..|+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeC
Confidence 4566788888776 23333 678999999999999999876 48999999999999999 9999999
Q ss_pred CEEEEEEeecc
Q psy16184 170 GRRVLVDVERS 180 (363)
Q Consensus 170 g~~i~V~~a~~ 180 (363)
|+.|+|+++.+
T Consensus 75 Gr~LkV~lkt~ 85 (91)
T 2dnr_A 75 NRTITIALKSP 85 (91)
T ss_dssp TEEEEEEECCC
T ss_pred CeEEEEEeCCC
Confidence 99999999865
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=3.3e-11 Score=95.52 Aligned_cols=79 Identities=19% Similarity=0.123 Sum_probs=69.5
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecC-HHHHHHHHHHhC--CceeCCE
Q psy16184 96 ATMDPFKTLFIARVNYD-TSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEH-ERDMHSAYKHAD--GKKIDGR 171 (363)
Q Consensus 96 ~~~~~~~~l~V~nL~~~-~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~-~~~a~~Ai~~l~--g~~i~g~ 171 (363)
...++++.|||+||++. ++.++|+++|++||.|..|.|+.+.. .|||.|.+ ..+|..|+..|| +..|.|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 34567889999999999 99999999999999999999988753 69999999 899999999995 7889998
Q ss_pred EEEEEeecc
Q psy16184 172 RVLVDVERS 180 (363)
Q Consensus 172 ~i~V~~a~~ 180 (363)
.+.+++...
T Consensus 87 ~~~~evL~G 95 (121)
T 1owx_A 87 EVTWEVLEG 95 (121)
T ss_dssp SEEEEECCH
T ss_pred EEEEEECCC
Confidence 888887543
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=4.2e-10 Score=84.14 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=63.1
Q ss_pred CCCCCCeEEEcCCCCC-----CCH----HHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q psy16184 97 TMDPFKTLFIARVNYD-----TSE----SKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKK 167 (363)
Q Consensus 97 ~~~~~~~l~V~nL~~~-----~t~----~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~ 167 (363)
..+|..||+|.-++.. +.. .+|.+.|.+||+|..++|+.++ +||+|.+.++|.+||. |||..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 4556779999988743 222 5689999999999999998873 9999999999999999 99999
Q ss_pred eCCEEEEEEeec
Q psy16184 168 IDGRRVLVDVER 179 (363)
Q Consensus 168 i~g~~i~V~~a~ 179 (363)
|+|+.|+|.+..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999999753
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=2.8e-09 Score=94.23 Aligned_cols=79 Identities=18% Similarity=0.379 Sum_probs=65.6
Q ss_pred CeEEEcCCC-----CCCCHHHHHHHHHhhCCccEEEEeccC----CCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEE
Q psy16184 102 KTLFIARVN-----YDTSESKLRREFEVYGPIKKIVMVHNK----VTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 172 (363)
Q Consensus 102 ~~l~V~nL~-----~~~t~~~L~~~F~~~G~i~~v~i~~d~----~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~ 172 (363)
..|.+.|+- ..-.+++|.+.|++||.|..|.|+.+. .++.++||+||+|.+.++|.+|+..|||..|+|+.
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 345555542 233568899999999999999998543 45589999999999999999999999999999999
Q ss_pred EEEEeecc
Q psy16184 173 VLVDVERS 180 (363)
Q Consensus 173 i~V~~a~~ 180 (363)
|.|.+...
T Consensus 205 i~~~~~~~ 212 (222)
T 3dxb_A 205 VVAEVYDQ 212 (222)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999753
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.59 E-value=6e-07 Score=68.44 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=66.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhh-----CCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEE
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVY-----GPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 175 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~-----G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V 175 (363)
.++|-|-|||..++...|+.++..+ |.|..|.+..|. +-|+|+|.+...|.+|.-+|+|.+|.|++|.|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 5688899999999999999999999 999999998884 78999999999999999889999999999998
Q ss_pred Ee
Q psy16184 176 DV 177 (363)
Q Consensus 176 ~~ 177 (363)
--
T Consensus 95 gT 96 (117)
T 2l9w_A 95 GT 96 (117)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.87 E-value=4.3e-05 Score=58.00 Aligned_cols=76 Identities=13% Similarity=0.112 Sum_probs=63.6
Q ss_pred CCCeEEEcCCCCCC-C----HHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEE
Q psy16184 100 PFKTLFIARVNYDT-S----ESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 174 (363)
Q Consensus 100 ~~~~l~V~nL~~~~-t----~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 174 (363)
..++|+|+||+..+ + ...++++|..|+++....+... -.=..|.|.+.++|.+|-..|++..++|..|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35689999998765 2 2578999999999888777653 23578999999999999999999999999999
Q ss_pred EEeeccc
Q psy16184 175 VDVERSR 181 (363)
Q Consensus 175 V~~a~~~ 181 (363)
|-++.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9999753
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=0.0013 Score=49.67 Aligned_cols=72 Identities=10% Similarity=0.116 Sum_probs=60.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHh---h--CCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEE
Q psy16184 100 PFKTLFIARVNYDTSESKLRREFEV---Y--GPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 174 (363)
Q Consensus 100 ~~~~l~V~nL~~~~t~~~L~~~F~~---~--G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~ 174 (363)
...+|.|.|||+.+.++.|.-+|+. - |.|..|.... +-|+|+|.+...|+..|.. ..+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 3579999999999999999999987 2 5888887743 5799999999999999883 47889999999
Q ss_pred EEeecc
Q psy16184 175 VDVERS 180 (363)
Q Consensus 175 V~~a~~ 180 (363)
|....+
T Consensus 78 V~P~~~ 83 (104)
T 2dhx_A 78 LRPAPP 83 (104)
T ss_dssp EEECCC
T ss_pred EEcCCC
Confidence 876544
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.54 E-value=0.00024 Score=52.94 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=60.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCC--cceEEEEEecCHHHHHHHHHHhCCceeCC-----EEEE
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGK--PRGYAFIEYEHERDMHSAYKHADGKKIDG-----RRVL 174 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~--~~g~afV~f~~~~~a~~Ai~~l~g~~i~g-----~~i~ 174 (363)
++|.|.+||+.+|++++.+.+..+..+.....+..+.+.+ .-.-|||.|.+.+++......++|+.+.+ ....
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4899999999999999999999988777666655544333 34579999999999999999999987732 2345
Q ss_pred EEeec
Q psy16184 175 VDVER 179 (363)
Q Consensus 175 V~~a~ 179 (363)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66653
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.51 E-value=0.0004 Score=51.81 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=46.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
...++| ++|..+...+|.++|..||.| .|.++.|. -|||.|.+.+.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 445666 999999999999999999954 56676774 89999999999999999763
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.20 E-value=0.0017 Score=50.57 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=57.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC-EEEEEEee
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDG-RRVLVDVE 178 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g-~~i~V~~a 178 (363)
.+-|.|-+.|+.. ...|..+|++||.|....... ...+-.|.|.+..+|++||. .||..|+| -.|-|...
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 4578888999885 677888999999999887621 23599999999999999999 59999985 67777764
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.16 E-value=0.00037 Score=52.19 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=45.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy16184 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164 (363)
Q Consensus 103 ~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~ 164 (363)
.++| ++|..+...+|..+|..|| -..|.++.|. -|||.|.+++.|..|+..++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4556 9999999999999999999 4457777774 89999999999999999764
No 217
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.11 E-value=2.1e-07 Score=73.30 Aligned_cols=92 Identities=13% Similarity=0.171 Sum_probs=35.3
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERRRRERAEQVAYKLEQE 84 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (363)
.+|..+|..+|+|..+. |+.+. +.++|| |||.|.+... .+...+....+.++.+.+...+...
T Consensus 20 ~~L~~~F~~~G~v~~v~-i~~d~--~~~kg~-afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~----------- 84 (115)
T 4f25_A 20 KALYDTFSAFGNILSCK-VVCDE--NGSKGY-GFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK----------- 84 (115)
T ss_dssp HHHHHHHGGGSCEEEEE-EEEET--TEEEEE-EEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC-----------
T ss_pred HHHHHHHhccCCEEEEE-EeecC--CCCCce-EEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc-----------
Confidence 46999999999998874 44443 458899 9999977443 1122234444444332221100000
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEcCCCCCCCHHH
Q psy16184 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESK 117 (363)
Q Consensus 85 ~~~~~p~~~~~~~~~~~~~l~V~nL~~~~t~~~ 117 (363)
.............++|||+|||+.+|++.
T Consensus 85 ----~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 85 ----EREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ----C----------------------------
T ss_pred ----ccccccccccCCCCceEeCCCCCCccccc
Confidence 00000111122346899999999999764
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.81 E-value=0.0017 Score=48.65 Aligned_cols=78 Identities=12% Similarity=0.120 Sum_probs=53.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCC--cceEEEEEecCHHHHHHHHHHhCCceeCC-----EEE
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGK--PRGYAFIEYEHERDMHSAYKHADGKKIDG-----RRV 173 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~--~~g~afV~f~~~~~a~~Ai~~l~g~~i~g-----~~i 173 (363)
+-+|.|..||+.+|++++.+.+..+=.+.....+....+.+ .-.-|||.|.+.+++..-...++|..+.+ -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 45899999999999999877776543332222222222222 23469999999999999999999987632 245
Q ss_pred EEEee
Q psy16184 174 LVDVE 178 (363)
Q Consensus 174 ~V~~a 178 (363)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 66666
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.43 E-value=0.0052 Score=48.55 Aligned_cols=77 Identities=12% Similarity=0.149 Sum_probs=55.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEE-EEecc--------CCCC-----CcceEEEEEecCHHHHHHHHHHhCCce
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKI-VMVHN--------KVTG-----KPRGYAFIEYEHERDMHSAYKHADGKK 167 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v-~i~~d--------~~t~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~ 167 (363)
.-|.|-+.|+..+ ..|..+|++||.|.+- .+... +... ....+..|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4677878877654 5677899999998762 11110 0001 123578999999999999999 59999
Q ss_pred eCCEEEEEEeecc
Q psy16184 168 IDGRRVLVDVERS 180 (363)
Q Consensus 168 i~g~~i~V~~a~~ 180 (363)
|+|..|-|.+...
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888887653
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.88 E-value=0.0049 Score=59.58 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=42.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHH
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~ 162 (363)
++|||. ++..+++.+|.++|++||.|..+.+..+. .-||.|+|.+.++|..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 489997 79999999999999999999999887653 26999999999999977653
No 221
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=95.74 E-value=0.0034 Score=47.13 Aligned_cols=39 Identities=8% Similarity=0.234 Sum_probs=31.6
Q ss_pred hhhhhcCCCCCCCCCCC-CCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLP-PVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~-p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|+++|+|.... .+..++.|++++|| +||.|.+.
T Consensus 24 e~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~-aFV~f~~~ 63 (95)
T 2lkz_A 24 DSIMTALSPYASLAVNNIRLIKDKQTQQNRGF-AFVQLSSA 63 (95)
T ss_dssp HHHHHHSTTTCCCCGGGEECCCCSSSSSCSSE-EEEECSSS
T ss_pred HHHHHHHHhhCCccEEEEEEEecCCCCCCceE-eEEEECCH
Confidence 46999999999876432 37789999999999 99999554
No 222
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=94.46 E-value=0.0024 Score=49.54 Aligned_cols=62 Identities=8% Similarity=-0.025 Sum_probs=47.5
Q ss_pred ChhhhhcCCCCCCCCC--------CCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHHHH
Q psy16184 6 PPNLLALFAPRDPVPY--------LPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLERR 69 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~--------~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~~~ 69 (363)
..+|..+|..+++|.. + -++.++.++.++|| +||.|.+... .+...+....+.++.+.++..
T Consensus 21 ~~~l~~~F~~~G~i~~~~~~~~~~v-~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 21 IESVADYFKQIGIIKTNKKTGQPMI-NLYTDRETGKLKGE-ATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 3468999999999987 4 46677788999999 9999988655 333446778888887777653
No 223
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.37 E-value=0.012 Score=48.01 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=28.6
Q ss_pred EEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q psy16184 130 KIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGK 166 (363)
Q Consensus 130 ~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~ 166 (363)
.+.|+.+. ..++|||||+|.+.++|++|+..+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 45666664 368999999999999999999888764
No 224
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.14 E-value=0.0071 Score=49.15 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=37.9
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHh-CCceeCCEEEEEEeeccc
Q psy16184 139 TGKPRGYAFIEYEHERDMHSAYKHA-DGKKIDGRRVLVDVERSR 181 (363)
Q Consensus 139 t~~~~g~afV~f~~~~~a~~Ai~~l-~g~~i~g~~i~V~~a~~~ 181 (363)
....+|+++|+|.+.+.|++|+..| ||..|+| .|.|.++...
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 4567899999999999999999999 9999999 9999988653
No 225
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.0016 Score=51.59 Aligned_cols=37 Identities=5% Similarity=0.028 Sum_probs=32.6
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLN 45 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~ 45 (363)
..|..+|+.+|+|..|. +..||.|+.|+|| |||.|.+
T Consensus 21 ~~Lk~~Fs~fGeV~~~~-li~Dp~Tg~slGf-gfVef~d 57 (136)
T 2j8a_A 21 ISIKNYFKKYGEISHFE-AFNDPNSALPLHV-YLIKYAS 57 (136)
T ss_dssp HHHHHHHHTTSCCSEEE-EEECTTTCCEEEE-EEEECC-
T ss_pred HHHHHHHHhcCCeEEEE-EEecCCCCceeeE-EEEEECC
Confidence 46899999999999994 6679999999999 9999985
No 226
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.83 E-value=0.00048 Score=54.39 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=40.8
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC-CCCCCCCCCCcccHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE-DPKDTPPPTRVETREERL 66 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~-~~~~~~~~~~~~~~~~~~ 66 (363)
.+|..+|.++++|..+ .++.+..+++++|| +||.|.+... ..+..+....+.++.+.+
T Consensus 40 ~~l~~~F~~~G~v~~~-~~~~~~~~g~~~G~-afV~F~~~~~a~~Al~~~g~~~~gr~i~V 98 (124)
T 1wel_A 40 KHVIDFFKKLDIVEDS-IYIAYGPNGKATGE-GFVEFRNEADYKAALCRHKQYMGNRFIQV 98 (124)
T ss_dssp HHHHHHSCSSCBCTTT-CEEEECTTSSEEEE-EEEEBSSSHHHHHHHTSCSBCSTTSCBEE
T ss_pred HHHHHHHHhcCCccce-EEEEECCCCCCCeE-EEEEECCHHHHHHHHHhCCCeECCcEEEE
Confidence 4689999999999886 34445668999999 9999988554 122225666666655443
No 227
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=94.70 E-value=0.0056 Score=45.37 Aligned_cols=38 Identities=5% Similarity=0.170 Sum_probs=32.0
Q ss_pred hhhhhcCCCCC-CCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRD-PVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~-pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|+++| +|..+ -++.++.|+.++|| +||.|.+.
T Consensus 16 ~~l~~~F~~~G~~v~~v-~i~~d~~t~~~rg~-aFV~F~~~ 54 (91)
T 2lxi_A 16 DDIRGQLQSHGVQAREV-RLMRNKSSGQSRGF-AFVEFSHL 54 (91)
T ss_dssp HHHHHHHHHHTCCCSBC-CSSSCSSSCCCSSE-EEEECSSH
T ss_pred HHHHHHHHHhCCEeEEE-EEEecCCCCCcCce-EEEEecCH
Confidence 45999999999 78877 47779999999999 99999554
No 228
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=94.65 E-value=0.0027 Score=44.95 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=32.4
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++|+|..+ .+..++.++.++|| +||.|.+.
T Consensus 14 ~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 51 (75)
T 2mss_A 14 EDVKHYFEQFGKVDDA-MLMFDKTTNRHRGF-GFVTFESE 51 (75)
T ss_dssp HHHHHHHHTTSCCSEE-CCCBCSSSTTSCBE-EEEECSCH
T ss_pred HHHHHHHHhcCCEEEE-EEEecCCCCCcCcE-EEEEECCH
Confidence 4689999999999988 46678889999999 99998664
No 229
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.57 E-value=0.00038 Score=53.26 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=41.7
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC-CCCCCCCCCCcccHHHHHH
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE-DPKDTPPPTRVETREERLE 67 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~-~~~~~~~~~~~~~~~~~~~ 67 (363)
.+|..+|+++|+|..+ -++.++. +.++|| +||.|.+... ..+..+..+.+.++.+.++
T Consensus 26 ~~L~~~F~~~G~v~~v-~i~~d~~-g~~rG~-aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 26 DDIKEWLEDKGQVLNI-QMRRTLH-KAFKGS-IFVVFDSIESAKKFVETPGQKYKETDLLIL 84 (103)
T ss_dssp HHHHHHHHTSSCEEEE-EEECCCT-TSCCCE-EEEEESSHHHHHHHHTSSCCCCTTTTCEEE
T ss_pred HHHHHHHhhcCCEEEE-EEEECCC-CCCccE-EEEEECCHHHHHHHHHcCCCEECCEEEEEE
Confidence 4689999999999887 4566776 999999 9999987544 2222355666777655444
No 230
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=94.33 E-value=0.0031 Score=47.61 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=32.3
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 8 NLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 8 ~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
+|..+|+++|+|..+ -++.++.|++++|| +||.|.+.
T Consensus 28 ~L~~~F~~~G~i~~v-~i~~d~~tg~~kG~-afV~f~~~ 64 (100)
T 3ns6_A 28 ALTSLFSKAGKVVNM-EFPIDEATGKTKGF-LFVECGSM 64 (100)
T ss_dssp HHHHHHHTTSCEEEE-ECCEETTTTEECSE-EEEEESSH
T ss_pred HHHHHHHhcCCEeEE-EEEEcCCCCccceE-EEEEECCH
Confidence 799999999999988 46778899999999 99999664
No 231
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=94.01 E-value=0.011 Score=46.86 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=32.7
Q ss_pred ChhhhhcCCCCCCCCC--CCCCCCCCCCCCCCCCccccccccc
Q psy16184 6 PPNLLALFAPRDPVPY--LPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~--~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
..+|..+|.++|+|.. + -|+.++.|++++|| |||.|.+.
T Consensus 37 e~~L~~~F~~~G~v~~~~v-~i~~d~~tg~~rG~-aFV~f~~~ 77 (131)
T 2m2b_A 37 MDSILGALAPYAVLSSSNV-RVIKDKQTQLNRGF-AFIQLSTI 77 (131)
T ss_dssp SHHHHHHHGGGCCCCTTTE-ECCBCSSSSSBCSC-EEEECCHH
T ss_pred HHHHHHHHHHhCCcceeeE-EEEEcCCCCCcceE-EEEEECCH
Confidence 3569999999999977 5 47778999999999 99999554
No 232
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=93.96 E-value=0.00011 Score=57.26 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=26.1
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++|+|..+. +.. ++.++|| +||.|.+.
T Consensus 23 ~~l~~~F~~~G~v~~v~-i~~---~~~~~g~-afV~f~~~ 57 (115)
T 3lqv_A 23 EEMYDIFGKYGPIRQIR-VGN---TPETRGT-AYVVYEDI 57 (115)
T ss_dssp HHHHHHHHTTSCEEEEE-EEC---STTTTTC-EEEEESSH
T ss_pred HHHHHHHHhcCCeEEEE-Eee---CCCCCcE-EEEEECCH
Confidence 46899999999998763 322 4567999 89998553
No 233
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.95 E-value=0.015 Score=41.06 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=33.2
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
..+|..+|.++|+|..+ .+..++.++.++|| +||.|.+..
T Consensus 14 ~~~l~~~F~~~G~v~~v-~i~~~~~~~~~~g~-afV~f~~~~ 53 (77)
T 1uaw_A 14 QEGLREYFGQFGEVKEC-LVMRDPLTKRSRGF-GFVTFMDQA 53 (77)
T ss_dssp SHHHHHHHTTTSCCCCE-EEECCCCSSSCSSE-EEECCCCTT
T ss_pred HHHHHHHHHhcCCEEEE-EEecCCCCCCcCce-EEEEEcCHH
Confidence 45789999999999887 46668889999999 999986643
No 234
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=93.85 E-value=0.0039 Score=44.05 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=32.8
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|.++|+|..+ -+..++.++.++|| +||.|.+..
T Consensus 14 ~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~~ 52 (75)
T 1iqt_A 14 EKIREYFGGFGEVESI-ELPMDNKTNKRRGF-CFITFKEEE 52 (75)
T ss_dssp HHHHHHHHHHSCCSEE-CCCCSCCCSSSCCC-EEEECSSSH
T ss_pred HHHHHHHHhcCCeEEE-EEEecCCCCCcCCE-EEEEECCHH
Confidence 4689999999999887 46678889999999 999997643
No 235
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=93.51 E-value=0.0046 Score=47.69 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=33.4
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|+++|+|..+ .|+.++.|++++|| +||.|.+..
T Consensus 21 ~~L~~~F~~~G~i~~v-~i~~d~~tg~~rG~-aFV~f~~~~ 59 (110)
T 3s8s_A 21 TFLKDMCRKYGEVEEV-EILLHPRTRKHLGL-ARVLFTSTR 59 (110)
T ss_dssp HHHHHHHTTTSCEEEE-EEEECTTTCCEEEE-EEEEESSHH
T ss_pred HHHHHHHHhcCCeeEE-EEEECCCCCceeeE-EEEEECCHH
Confidence 4699999999999988 47779999999999 999996643
No 236
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=92.99 E-value=0.00025 Score=58.72 Aligned_cols=58 Identities=12% Similarity=0.140 Sum_probs=41.0
Q ss_pred hhhhhcCCCCC--CCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHH
Q psy16184 7 PNLLALFAPRD--PVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERL 66 (363)
Q Consensus 7 ~~l~~~f~~~~--pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~ 66 (363)
.+|..+|..+| +|..+ -++.++.|++++|| |||.|.+... .+...+....+.++.+.+
T Consensus 70 ~~L~~~F~~~G~i~v~~v-~i~~d~~tg~skGf-aFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V 131 (156)
T 3n9u_C 70 QQLIQVIRSIGVYDVVEL-KFAENRANGQSKGY-AEVVVASENSVHKLLELLPGKVLNGEKVDV 131 (156)
T ss_dssp HHHHHHHHHTTCCCEEEE-EEEECTTTCCEEEE-EEEEESCHHHHHHHHHHSTTCEETTEECEE
T ss_pred HHHHHHHHHHCCccEEEE-EEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCEECCeEeEE
Confidence 46899999999 56656 36678889999999 9999987544 233345566666654433
No 237
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=92.78 E-value=0.017 Score=44.25 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=32.1
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+|+|..+ .+..++.|+.++|| +||.|.+.
T Consensus 40 ~~L~~~F~~~G~i~~v-~i~~~~~tg~~kg~-afV~f~~~ 77 (109)
T 2rs2_A 40 EGLREYFGQFGEVKEC-LVMRDPLTKRSRGF-GFVTFMDQ 77 (109)
T ss_dssp HHHHHHHTTTSCEEEE-EECCCTTTCCCTTC-EEEEESSH
T ss_pred HHHHHHHHccCCeEEE-EEEECCCCCCcCcE-EEEEECCH
Confidence 4589999999999887 46678889999999 99999554
No 238
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=92.75 E-value=0.00095 Score=58.82 Aligned_cols=59 Identities=8% Similarity=0.104 Sum_probs=43.7
Q ss_pred hhhhhcCCCCC--CCCCCCCCCCCCCCCCCCCCccccccccccC--CCCCCCCCCCcccHHHHHH
Q psy16184 7 PNLLALFAPRD--PVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE--DPKDTPPPTRVETREERLE 67 (363)
Q Consensus 7 ~~l~~~f~~~~--pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~--~~~~~~~~~~~~~~~~~~~ 67 (363)
.+|..+|..++ .|..+ -|+.+..|++++|| +||.|.+... .+...+....|.++.+.+.
T Consensus 83 ~~L~~~F~~~G~~~v~~v-~i~~d~~tg~skGf-aFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 83 EDLTEAVHSLGVNDILEI-KFFENRANGQSKGF-ALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp HHHHHHHHTTTCCCEEEE-EEEECTTTCCEEEE-EEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred HHHHHHHHHHCCcceEEE-EEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 46899999999 77777 46678889999999 9999987554 3344466666666655444
No 239
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.65 E-value=0.037 Score=41.39 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=32.5
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
..+|..+|..+++|..+ .++.++.++.++|| +||.|.+.
T Consensus 26 ~~~l~~~f~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 64 (102)
T 2cqb_A 26 DKVLHAAFIPFGDITDI-QIPLDYETEKHRGF-AFVEFELA 64 (102)
T ss_dssp HHHHHHHHTTTSCCCCE-ECCCCSSSCCCSSE-EEECCSSH
T ss_pred HHHHHHHhhccCCEEEE-EEEecCCCCCcceE-EEEEECCH
Confidence 35689999999999988 46678889999999 88888553
No 240
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.56 E-value=0.029 Score=41.48 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=32.5
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+..++.++.++.++|| +||.|.+.
T Consensus 20 ~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~-afV~f~~~ 58 (96)
T 1x5t_A 20 KLLYDTFSAFGVILQTPKIMRDPDTGNSKGY-AFINFASF 58 (96)
T ss_dssp HHHHHHHHTTSCBSSCCEECCCTTTCSCCSE-EEEEBSSH
T ss_pred HHHHHHHHhcCCeeEEEEEEEcCCCCCcCeE-EEEEECCH
Confidence 5689999999999888446678889999999 89998553
No 241
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.53 E-value=0.021 Score=41.28 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=31.7
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ .++.++.++.++|| +||.|.+.
T Consensus 20 ~~l~~~f~~~G~i~~~-~i~~~~~~~~~~g~-afV~f~~~ 57 (85)
T 1x4e_A 20 QDLVKLCQPYGKIVST-KAILDKTTNKCKGY-GFVDFDSP 57 (85)
T ss_dssp HHHHTTSTTTSCEEEE-EEECCSSSCSCCSE-EEEEESCH
T ss_pred HHHHHHHHhcCCeEEE-EEEecCCCCCcCcE-EEEEECCH
Confidence 4689999999999887 46667889999999 89988553
No 242
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=92.43 E-value=0.0035 Score=47.95 Aligned_cols=58 Identities=10% Similarity=0.013 Sum_probs=38.2
Q ss_pred ChhhhhcCCCCCC---CCCCCCCCCCCCCCCCCCCccccccccccC-CCCCCCCCCCcccHHHHH
Q psy16184 6 PPNLLALFAPRDP---VPYLPPVEKLPHEKKTHGYSGIAAFLNEFE-DPKDTPPPTRVETREERL 66 (363)
Q Consensus 6 p~~l~~~f~~~~p---i~~~~p~~~~p~t~~s~g~~g~v~f~~~~~-~~~~~~~~~~~~~~~~~~ 66 (363)
..+|..+|..+++ |..+ -+..++. ++++|| +||.|.+... ..+..+....+.++.+.+
T Consensus 25 e~~l~~~F~~~g~~~~v~~v-~i~~~~~-g~~~G~-afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 25 MEDVLNFFSDCRIRNGENGI-HFLLNRD-GKRRGD-ALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp SHHHHHHTTTSCBTTTTTTE-ECCCCTT-STTCSE-EEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred HHHHHHHHHhcCCcCCcceE-EEEECCC-CCEeeE-EEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 4579999999888 6666 3555666 999999 9999987544 111224445555544433
No 243
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=92.40 E-value=0.0056 Score=44.06 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=29.8
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|+++|+|..+. ++ +.+++++|| +||.|.+..
T Consensus 22 ~~l~~~F~~~G~i~~v~-i~--~~~g~~~g~-afV~f~~~~ 58 (81)
T 2krb_A 22 NVIHKIFSKFGKITNDF-YP--EEDGKTKGY-IFLEYASPA 58 (81)
T ss_dssp HHHHHHHHTTCCEEEEE-CC--CBTTBCCCE-EEEEESSHH
T ss_pred HHHHHHHhhcCCeEEEE-ec--CCCCcEeEE-EEEEECCHH
Confidence 56899999999998764 32 468999999 999997644
No 244
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.29 E-value=0.045 Score=42.06 Aligned_cols=38 Identities=16% Similarity=0.053 Sum_probs=30.3
Q ss_pred hhhhhcCCCCCCC-CCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDPV-PYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~pi-~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|..+++| ..+ .|+.++ +++++|| +||.|.+..
T Consensus 30 ~~l~~~F~~~g~v~~~v-~i~~d~-~g~~~G~-afV~F~~~~ 68 (114)
T 2cpy_A 30 MDVLQFLEGIPVDENAV-HVLVDN-NGQGLGQ-ALVQFKNED 68 (114)
T ss_dssp HHHHHHTTTSCCCSTTE-EECCCT-TSSCSSC-EEEECSSHH
T ss_pred HHHHHHHHhCCCcCCeE-EEEECC-CCCcceE-EEEEECCHH
Confidence 4699999999998 555 355677 8999999 999996643
No 245
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.20 E-value=0.028 Score=42.23 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=32.6
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|..+++|..+ .+..++.|+.++|| +||.|.+..
T Consensus 28 ~~l~~~f~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~~ 66 (103)
T 2dnm_A 28 DSLRRVFEKYGRVGDV-YIPREPHTKAPRGF-AFVRFHDRR 66 (103)
T ss_dssp HHHHHHHTTTSCEEEE-ECCBCSSSCSBCSC-EEEEESSSS
T ss_pred HHHHHHHHhcCCEEEE-EEEeCCCCCCCCeE-EEEEECCHH
Confidence 4689999999999887 46678889999999 999986643
No 246
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=92.14 E-value=0.013 Score=43.03 Aligned_cols=38 Identities=8% Similarity=0.110 Sum_probs=30.6
Q ss_pred hhhhhcCCCCC--CCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRD--PVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~--pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++| +|..+ -++.++.+++++|| +||.|.+.
T Consensus 16 ~~l~~~F~~~G~~~v~~v-~i~~~~~~g~~kG~-afV~f~~~ 55 (90)
T 3p5t_L 16 EDLTEAVHSLGVNDILEI-KFFENRANGQSKGF-ALVGVGSE 55 (90)
T ss_dssp HHHHHHHHTTTCCCCCCE-EEEECTTTCCEEEE-EEECC-CH
T ss_pred HHHHHHHHHhCCCceEEE-EEEecCCCCccCcE-EEEEECCH
Confidence 46899999999 77766 36678889999999 99998554
No 247
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.07 E-value=0.028 Score=43.30 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=32.2
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ -++.++.++.++|| +||.|.+.
T Consensus 42 ~~l~~~F~~~G~i~~v-~i~~~~~~g~~~g~-afV~f~~~ 79 (116)
T 1x4b_A 42 ESLRNYYEQWGKLTDC-VVMRDPASKRSRGF-GFVTFSSM 79 (116)
T ss_dssp HHHHHHHTSSCCCSEE-EEECCTTTSSCCSE-EEEECSSH
T ss_pred HHHHHHHHhcCCEEEE-EEEECCCCCCcCce-EEEEeCCH
Confidence 4689999999999888 46678889999999 99998554
No 248
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.92 E-value=0.027 Score=43.28 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=32.9
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|..+++|..+ .+..++.++.++|| +||.|.+..
T Consensus 40 ~~l~~~F~~~G~i~~v-~i~~~~~~g~~~g~-afV~f~~~~ 78 (114)
T 2cq4_A 40 RDLEDFFSAVGKVRDV-RIISDRNSRRSKGI-AYVEFCEIQ 78 (114)
T ss_dssp HHHHHHHTTTSCEEEE-EECCSCCSSSCCCC-EEEEESCGG
T ss_pred HHHHHHHHhCCCEeEE-EEEecCCCCccCcE-EEEEeCcHH
Confidence 4689999999999888 46668888999999 999997654
No 249
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=91.89 E-value=0.02 Score=45.78 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=32.3
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|+.+++|..+ .+..++.++.++|| +||.|.+..
T Consensus 62 ~~L~~~F~~~G~i~~v-~i~~~~~~g~~~G~-afV~F~~~~ 100 (135)
T 2lea_A 62 DTLRRVFEKYGRVGDV-YIPRDRYTKESRGF-AFVRFHDKR 100 (135)
T ss_dssp HHHHHHHGGGSCCSEE-ECCCCSSSSSCCSC-CEEECSCHH
T ss_pred HHHHHHHHhcCCEEEE-EEEecCCCCccceE-EEEEECCHH
Confidence 4689999999999887 46667888999999 999996643
No 250
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.71 E-value=0.024 Score=42.28 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=31.9
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+++|..+ .++.++.++.++|| +||.|.+.
T Consensus 25 ~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 62 (99)
T 2dgs_A 25 TELREYFKKFGVVTEV-VMIYDAEKQRPRGF-GFITFEDE 62 (99)
T ss_dssp HHHHHHHSSSSCEEEE-EECCCTTTCSCCSE-EEEEESSH
T ss_pred HHHHHHHHhcCCeEEE-EEEeCCCCCCCCce-EEEEECCH
Confidence 5689999999999887 46678889999999 89998553
No 251
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=91.68 E-value=0.0082 Score=45.26 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=32.0
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|+++|+|..+ -+..++.|+.++|| +||.|.+.
T Consensus 34 ~~L~~~F~~~G~I~~v-~i~~d~~tg~~kG~-afV~f~~~ 71 (99)
T 4fxv_A 34 DELRSLFSSIGEVESA-KLIRDKVAGHSLGY-GFVNYVTA 71 (99)
T ss_dssp HHHHHHHHTTSCEEEE-EEEECSSSCCEEEE-EEEEESSH
T ss_pred HHHHHHHHhcCCEEEe-EeeecCCCCccccc-EEEEECCH
Confidence 4689999999999987 46678889999999 99998553
No 252
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.59 E-value=0.022 Score=43.38 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=32.0
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+++|..+ .++.++.++.++|| +||.|.+.
T Consensus 30 ~~l~~~F~~~G~i~~v-~i~~~~~~g~~~g~-afV~f~~~ 67 (111)
T 1x4h_A 30 EALGEVLQQFGDLKYV-RVVLHPDTEHSKGC-AFAQFMTQ 67 (111)
T ss_dssp HHHHHHHHTTSCEEEE-ECCBCSSSCCBCSE-EEEEESSH
T ss_pred HHHHHHHHhcCCeEEE-EEEecCCCCCCccE-EEEEECCH
Confidence 4689999999999888 46778889999999 99998554
No 253
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=91.37 E-value=0.013 Score=42.68 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=32.1
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++|+|..+ .+..++.+++++|| +||.|.+.
T Consensus 26 ~~l~~~F~~~G~i~~v-~i~~~~~~g~~~g~-afV~f~~~ 63 (87)
T 3s7r_A 26 KDLKDYFTKFGEVVDC-TIKMDPNTGRSRGF-GFILFKDA 63 (87)
T ss_dssp HHHHHHHTTTSCEEEE-EEEECTTTCCEEEE-EEEEESST
T ss_pred HHHHHHHHhCCCEEEE-EEeecCCCCccccE-EEEEECCH
Confidence 4699999999999988 46667889999999 99998654
No 254
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.19 E-value=0.0089 Score=45.31 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=29.2
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
..+|..+|.+++++ .+ .|+.++ +++++|| +||.|.+..
T Consensus 29 e~~l~~~F~~~G~~-~v-~i~~d~-~g~~~G~-afV~F~~~~ 66 (102)
T 1wez_A 29 ENDIYNFFSPLNPM-RV-HIEIGP-DGRVTGE-ADVEFATHE 66 (102)
T ss_dssp HHHHHHSSCSCCCS-EE-EEEESS-SSCEEEE-EEEECSSSH
T ss_pred HHHHHHHHHHcCce-EE-EEEECC-CCCEeeE-EEEEECCHH
Confidence 35699999999965 44 355566 8999999 999996654
No 255
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.18 E-value=0.08 Score=40.63 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=28.7
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCC---CCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHE---KKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t---~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|. + .++.+..+ ++++|| +||.|.+.
T Consensus 23 ~~L~~~F~~~G~i~-~-~~~~~~~~~~~g~~~G~-aFV~f~~~ 62 (114)
T 2dnl_A 23 DEITASFRRFGPLV-V-DWPHKAESKSYFPPKGY-AFLLFQEE 62 (114)
T ss_dssp HHHHHHTTTTCCCC-E-ECTTSSSSCCCSCTTSE-EEECCSSH
T ss_pred HHHHHHHHhcCCEE-E-EEeecCCCCCCCCcccE-EEEEECCH
Confidence 46899999999998 4 34555566 799999 99998553
No 256
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.96 E-value=0.66 Score=45.45 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=46.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q psy16184 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADG 165 (363)
Q Consensus 101 ~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g 165 (363)
...++|+ +|..+...+|.++|+.||.| .|.++.+ ..|||.|.+.+.|..++.+++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3466676 88888999999999999954 6666555 3899999999999999998853
No 257
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=90.84 E-value=0.027 Score=42.55 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=32.1
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+++|..+ .++.++.++.++|| +||.|.+.
T Consensus 28 ~~l~~~F~~~G~i~~v-~i~~~~~~g~~~g~-afV~f~~~ 65 (106)
T 2dgp_A 28 KDLKPLFEEFGKIYEL-TVLKDRFTGMHKGC-AFLTYCER 65 (106)
T ss_dssp HHHHHHHHHHSCCCEE-ECCCCSSSCSCCSE-EEEEESSH
T ss_pred HHHHHHHHhcCCeeEE-EEEecCCCCCcceE-EEEEECCH
Confidence 4689999999999988 46778889999999 89998553
No 258
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.76 E-value=0.033 Score=41.48 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=31.7
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ .+..++.++.++|| +||.|.+.
T Consensus 23 ~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 60 (99)
T 1whw_A 23 EDLEKLFSAYGPLSEL-HYPIDSLTKKPKGF-AFVTFMFP 60 (99)
T ss_dssp HHHHHHHHTTSCEEEE-ECCCCTTTCCCCSE-EEEEESSH
T ss_pred HHHHHHHHhcCCEeEE-EEEecCCCCCcCeE-EEEEECCH
Confidence 4689999999999887 46667889999999 99998553
No 259
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.66 E-value=0.043 Score=40.68 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=31.1
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ .++.++.+++++|| +||.|.+.
T Consensus 30 ~~l~~~F~~~G~v~~~-~~~~~~~~g~~~g~-afV~f~~~ 67 (98)
T 2cqp_A 30 DEILDFFYGYQVIPGS-VCLKYNEKGMPTGE-AMVAFESR 67 (98)
T ss_dssp HHHHHHTTTSCCCTTT-CEEEECSSSCEEEE-EEEEESCH
T ss_pred HHHHHHHHHcCCccce-EEEEECCCCCeeeE-EEEEECCH
Confidence 4699999999999877 35567788999999 89998554
No 260
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.65 E-value=0.048 Score=40.06 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=31.7
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ .+..++.++.++|| +||.|.+.
T Consensus 31 ~~l~~~f~~~G~v~~v-~i~~~~~~~~~~g~-afV~f~~~ 68 (94)
T 2e5h_A 31 NDLYRIFSKYGKVVKV-TIMKDKDTRKSKGV-AFILFLDK 68 (94)
T ss_dssp HHHHHHTTTTSCEEEE-EECCCSSSCCCTTC-EEEEESCH
T ss_pred HHHHHHHHhcCCeEEE-EEEeCCCCCCcccE-EEEEECCH
Confidence 4699999999999887 46667888999999 88988554
No 261
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=90.62 E-value=0.022 Score=41.60 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=32.5
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
..+|..+|+++|+|..+ .+..++.++.++|| +||.|.+.
T Consensus 15 ~~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 53 (90)
T 2ki2_A 15 SEQVKELFSQFGKVFNV-KLIYDRETKKPKGF-GFVEMQEE 53 (90)
T ss_dssp HHHHTTTHHHHTCCSEE-EECCCSSSCCCCEE-EEEEECTT
T ss_pred HHHHHHHHHhcCCEEEE-EEEEcCCCCCcceE-EEEEECCH
Confidence 35689999999999887 46678888999999 99998654
No 262
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.59 E-value=0.036 Score=41.75 Aligned_cols=38 Identities=34% Similarity=0.515 Sum_probs=31.8
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ .++.++.++.++|| +||.|.+.
T Consensus 30 ~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 67 (105)
T 1x5u_A 30 PLLWELFLQAGPVVNT-HMPKDRVTGQHQGY-GFVEFLSE 67 (105)
T ss_dssp HHHHHHHHTTSCEEEE-ECCBCSSSCSBCSC-EEEEESSH
T ss_pred HHHHHHHHhcCCeEEE-EEEecCCCCcCCcE-EEEEECCH
Confidence 4689999999999887 46678889999999 99998554
No 263
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=90.18 E-value=0.036 Score=41.04 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=31.8
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|+.+|+|..+ -+..++.++.++|| +||.|.+.
T Consensus 17 ~~l~~~F~~~G~i~~v-~i~~~~~~g~~~g~-afV~f~~~ 54 (96)
T 2x1f_A 17 EQILDLCSNVGPVINL-KMMFDPQTGRSKGY-AFIEFRDL 54 (96)
T ss_dssp HHHHHHHHTTSCEEEE-ECCBCTTTCCBCSE-EEEEESSH
T ss_pred HHHHHHHHhcCCEEEE-EEEeCCCCCccceE-EEEEECCH
Confidence 5689999999999887 46678889999999 89998543
No 264
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=90.06 E-value=0.048 Score=40.12 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=31.2
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ .++.++.+++++|| +||.|.+.
T Consensus 30 ~~l~~~F~~~G~i~~~-~~~~~~~~g~~~g~-afV~f~~~ 67 (95)
T 2ek1_A 30 DEILDFFYGYQVIPGS-VCLKYNEKGMPTGE-AMVAFESR 67 (95)
T ss_dssp HHHHHHTTTSCBCTTC-CEEEECTTSCEEEE-EEEEESSH
T ss_pred HHHHHHHHhcCCccce-EEEEeCCCCCEeeE-EEEEECCH
Confidence 5699999999999877 35567788999999 89998554
No 265
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=89.96 E-value=0.045 Score=42.75 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=31.8
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+++|..+ .++.++.++.++|| +||.|.+.
T Consensus 37 ~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 74 (126)
T 3ex7_B 37 EDIHDKFAEYGEIKNI-HLNLDRRTGYLKGY-TLVEYETY 74 (126)
T ss_dssp HHHHHHHHTTSCEEEE-ECCBCTTTSSBCSC-EEEEESSH
T ss_pred HHHHHHHHhcCCeEEE-EEEecCCCCccceE-EEEEECCH
Confidence 4689999999999887 46678889999999 89998543
No 266
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.92 E-value=0.006 Score=45.64 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=31.7
Q ss_pred hhhhhcCCCCCCCC-CCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVP-YLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~-~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|. .+ .++.++.++.++|| +||.|.+.
T Consensus 24 ~~l~~~F~~~G~i~~~v-~i~~~~~~g~~~g~-afV~f~~~ 62 (99)
T 2div_A 24 NFISRAFATMGETVMSV-KIIRNRLTGIPAGY-CFVEFADL 62 (99)
T ss_dssp HHHHHHHHHTTCCCCEE-EEEECSSSCCEEEE-EEEECSCH
T ss_pred HHHHHHHHHhCCcceEE-EEeecCCCCCcCCE-EEEEeCCH
Confidence 46899999999998 76 46678889999999 99998654
No 267
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.88 E-value=0.039 Score=40.63 Aligned_cols=39 Identities=21% Similarity=0.404 Sum_probs=32.1
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
..+|..+|..+++|..+ .+..++.+++++|| +||.|.+.
T Consensus 19 ~~~l~~~f~~~G~v~~v-~i~~~~~~~~~~g~-afV~f~~~ 57 (95)
T 2dnz_A 19 EDMLRGIFEPFGKIDNI-VLMKDSDTGRSKGY-GFITFSDS 57 (95)
T ss_dssp HHHHHHHHTTTSCEEEE-EEECCSSSCCCCSE-EEEEESCH
T ss_pred HHHHHHHHHhcCCEeEE-EEeecCCCCceeeE-EEEEECCH
Confidence 34689999999999887 46678889999999 88888543
No 268
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=89.85 E-value=0.046 Score=42.13 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=32.3
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|..+|+|..+ .+..++.++.++|| +||.|.+..
T Consensus 55 ~~l~~~F~~~G~i~~~-~i~~~~~~g~~~g~-afV~f~~~~ 93 (118)
T 2khc_A 55 TDLASTFLPFGNVISA-KVFIDKQTSLSKCF-GFVSFDNPD 93 (118)
T ss_dssp HHHHHHTTTSCEEEEE-EECCCSSSSCCCCE-EEEEEESSH
T ss_pred HHHHHHHHhcCCEEEE-EEEeCCCCCCcCcE-EEEEECCHH
Confidence 4689999999999887 46667788999999 999996653
No 269
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=89.77 E-value=0.037 Score=44.51 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=28.0
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|.++++ ..+ -|+.++. ++++|| +||.|.+..
T Consensus 61 ~dL~~~F~~~Gi-~~v-~i~~d~~-g~srGf-aFV~F~~~e 97 (139)
T 2hgn_A 61 NDIYNFFSPLNP-VRV-HIEIGPD-GRVTGE-ADVEFATHE 97 (139)
T ss_dssp HHHHHHHCSCCC-SEE-ECCCSSS-SCSSCC-CEEECSHHH
T ss_pred HHHHHHHHhcCC-eEE-EEEECCC-CCCceE-EEEEeCCHH
Confidence 469999999994 455 3555665 999999 999996643
No 270
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.71 E-value=0.096 Score=39.93 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=30.8
Q ss_pred hhhhhcCCCCCCCC--------CCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVP--------YLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~--------~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+++|. .+ -+..++.+++++|| +||.|.+.
T Consensus 30 ~~l~~~F~~~G~i~~~~~~~~~~v-~i~~~~~~g~~~g~-afV~f~~~ 75 (113)
T 2cpe_A 30 DDLADFFKQCGVVKMNKRTGQPMI-HIYLDKETGKPKGD-ATVSYEDP 75 (113)
T ss_dssp HHHHHHHTTTSCBCBCSSSCCBSE-ECCBCTTTCSBCSE-EEEEBSSH
T ss_pred HHHHHHHHhcCCEeEccccCccCE-EEEEeCCCCCeeeE-EEEEECCH
Confidence 46899999999998 34 36667789999999 89998554
No 271
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=89.64 E-value=0.013 Score=45.38 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=31.1
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
..+|..+|+++++|..+ .+..++ ++.++|| +||.|.+..
T Consensus 21 ~~~l~~~F~~~G~i~~v-~i~~~~-~g~~~g~-afV~F~~~~ 59 (116)
T 2fy1_A 21 EKMLKAVFGKHGPISEV-LLIKDR-TSKSRGF-AFITFENPA 59 (116)
T ss_dssp HHHHHHHHHTSSCCSEE-EEECST-TTTCCCE-EEEECSSHH
T ss_pred HHHHHHHHHhcCCEEEE-EEEECC-CCCcccE-EEEEECCHH
Confidence 35689999999999887 355566 8999999 999996643
No 272
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=89.63 E-value=0.021 Score=40.94 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=31.7
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++|+|..+ .++.++.++.++|| +||.|.+.
T Consensus 16 ~~l~~~f~~~G~i~~~-~i~~~~~~~~~~g~-afV~f~~~ 53 (83)
T 3md1_A 16 ETLRNAFKDFPSYLSG-HVMWDMQTGSSRGY-GFVSFTSQ 53 (83)
T ss_dssp HHHHHHHTTSTTEEEE-EEEECTTTCCEEEE-EEEEESCH
T ss_pred HHHHHHHHhcCCeeEE-EEEEcCCCCCccce-EEEEECCH
Confidence 4689999999999887 46668889999999 99998543
No 273
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.53 E-value=0.045 Score=41.33 Aligned_cols=37 Identities=14% Similarity=0.338 Sum_probs=29.3
Q ss_pred hhhhhcCCCCCCCCC-CCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPY-LPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~-~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|.. + -+..+ .+++++|| +||.|.+.
T Consensus 30 ~~l~~~F~~~G~v~~~v-~i~~~-~~g~~~G~-afV~F~~~ 67 (104)
T 1wg5_A 30 EEIVQFFSGLEIVPNGM-TLPVD-FQGRSTGE-AFVQFASQ 67 (104)
T ss_dssp HHHHHHTTTCCEEEEEE-ECCBC-SSSCBCSE-EEEEESSH
T ss_pred HHHHHHHHhcCCcceeE-EEEEC-CCCCcceE-EEEEECCH
Confidence 469999999999875 3 34455 68999999 99999554
No 274
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=89.48 E-value=0.042 Score=41.81 Aligned_cols=38 Identities=8% Similarity=0.191 Sum_probs=31.6
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++|+|..+ .+..++.++.++|| +||.|.+.
T Consensus 41 ~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 78 (110)
T 1oo0_B 41 DEIQEKFCDYGEIKNI-HLNLDRRTGFSKGY-ALVEYETH 78 (110)
T ss_dssp HHHHHHHGGGSCEEEE-ECCBCTTTSSBCSE-EEEEESSH
T ss_pred HHHHHHHHhcCCEEEE-EEEecCCCCCcceE-EEEEECCH
Confidence 4589999999999887 46667889999999 99998553
No 275
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.47 E-value=0.075 Score=39.92 Aligned_cols=37 Identities=16% Similarity=0.419 Sum_probs=30.0
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCC-CCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHE-KKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t-~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..++ |..+ .++.++.| ++++|| +||.|.+.
T Consensus 30 ~~l~~~F~~~G-i~~v-~i~~~~~~~g~~~g~-afV~f~~~ 67 (104)
T 1wi8_A 30 ESIKEFFRGLN-ISAV-RLPREPSNPERLKGF-GYAEFEDL 67 (104)
T ss_dssp HHHHHHTTTSC-EEEE-ECCBCSSCTTSBCSC-EEEEESSH
T ss_pred HHHHHHHHHCC-ceEE-EEecCCCCCCCcCeE-EEEEECCH
Confidence 46999999999 7777 46667877 999999 89998554
No 276
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=89.41 E-value=0.045 Score=43.26 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=31.8
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ .+..++.++.++|| +||.|.+.
T Consensus 61 ~~L~~~F~~~G~I~~v-~i~~d~~tg~~~G~-afV~F~~~ 98 (129)
T 2kxn_B 61 RDLREVFSKYGPIADV-SIVYDQQSRRSRGF-AFVYFENV 98 (129)
T ss_dssp HHHHHHHTTTSCEEEE-EEECCSSSSCCCCE-EEEEESCH
T ss_pred HHHHHHHHhcCCeEEE-EEEecCCCCccceE-EEEEECCH
Confidence 4689999999999887 46678889999999 89998554
No 277
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.38 E-value=0.033 Score=41.82 Aligned_cols=38 Identities=18% Similarity=0.380 Sum_probs=31.7
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ .+..++.++.++|| +||.|.+.
T Consensus 30 ~~l~~~f~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 67 (103)
T 2cq0_A 30 TDLQELFRPFGSISRI-YLAKDKTTGQSKGF-AFISFHRR 67 (103)
T ss_dssp HHHHTTSTTTCCEEEE-EEEECSSSCSEEEE-EEEEESSH
T ss_pred HHHHHHHHhCCCeEEE-EEeecCCCCceeeE-EEEEECCH
Confidence 4689999999999887 46667788999999 89998554
No 278
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.17 E-value=0.02 Score=43.26 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=32.4
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|..+++|..+ .++.++.++.++|| +||.|.+..
T Consensus 31 ~~l~~~F~~~G~v~~v-~i~~~~~~g~~~g~-afV~f~~~~ 69 (105)
T 2dh8_A 31 ETLRSYFSQYGEVVDC-VIMKDKTTNQSRGF-GFVKFKDPN 69 (105)
T ss_dssp HHHHHHHHTTSCEEEE-EEEECSSSCCEEEE-EEEEESSTT
T ss_pred HHHHHHHHhcCCeEEE-EEeeCCCCCCcceE-EEEEECCHH
Confidence 4589999999999887 46678889999999 899986543
No 279
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.04 E-value=0.018 Score=43.39 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=31.8
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ .++.++.++.++|| +||.|.+.
T Consensus 30 ~~l~~~F~~~G~i~~v-~i~~~~~~g~~~g~-afV~f~~~ 67 (103)
T 2cqg_A 30 QDLKEYFSTFGEVLMV-QVKKDLKTGHSKGF-GFVRFTEY 67 (103)
T ss_dssp HHHHHHHGGGSCEEEE-EEEECSSSCSEEEE-EEEEESSH
T ss_pred HHHHHHHHhcCCeEEE-EEEecCCCCCccce-EEEEECCH
Confidence 4689999999999887 46678889999999 89998553
No 280
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.81 E-value=0.047 Score=41.98 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=32.0
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+++|..+ -+..++.+++++|| +||.|.+.
T Consensus 32 ~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 69 (116)
T 2cqd_A 32 ASLRKYFEGFGDIEEA-VVITDRQTGKSRGY-GFVTMADR 69 (116)
T ss_dssp HHHHHHHHTTSCEEEE-EESCCSSSCCCCSE-EEEEESSH
T ss_pred HHHHHHHHhCCCeeEE-EEEEcCCCCccceE-EEEEECCH
Confidence 4689999999999887 46678889999999 89998654
No 281
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=88.74 E-value=0.034 Score=43.94 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=28.2
Q ss_pred hhhhhcCCCCCCCC--CCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDPVP--YLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~pi~--~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|.++ .|. .+ -|+.++. ++++|| +||.|.+..
T Consensus 57 ~dL~~~F~~~-~i~~~~v-~i~~d~~-GrsrGf-aFV~F~~~e 95 (126)
T 2hgm_A 57 EEIVQFFSGL-EIVPNGI-TLPVDPE-GKITGE-AFVQFASQE 95 (126)
T ss_dssp HHHHHHTTTS-CEEEEEE-ECCCCSS-SSSCSE-EEEEESSTT
T ss_pred HHHHHHHhcC-CceeeEE-EEEECCC-CCCceE-EEEEECCHH
Confidence 4699999999 454 44 3555666 999999 999997754
No 282
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.62 E-value=0.042 Score=41.10 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=31.5
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ .+..++.++.++|| +||.|.+.
T Consensus 27 ~~l~~~f~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 64 (102)
T 1x5s_A 27 QSLEQVFSKYGQISEV-VVVKDRETQRSRGF-GFVTFENI 64 (102)
T ss_dssp HHHHHHHHHHSCCCEE-EECCCSSSCSCCSE-EEEECSSH
T ss_pred HHHHHHHHhcCCeEEE-EEEeCCCCCCcccE-EEEEECCH
Confidence 4689999999999887 46667888999999 88888543
No 283
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.58 E-value=0.061 Score=40.52 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=30.8
Q ss_pred hhhhhcCCCCCCCCCCCCCCCC-CCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKL-PHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~-p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+. ++.+ +.++.++|| +||.|.+.
T Consensus 30 ~~l~~~F~~~G~i~~v~-i~~~~~~~~~~~g~-afV~f~~~ 68 (107)
T 2cph_A 30 REIRELFSTFGELKTVR-LPKKMTGTGAHRGF-GFVDFITK 68 (107)
T ss_dssp HHHHHHHHTTSCEEEEE-CCCCCSSSCSSCSE-EEEEESSH
T ss_pred HHHHHHHHccCCeEEEE-EecCCCCCCCcCce-EEEEECCH
Confidence 46899999999998874 5556 678999999 89988553
No 284
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=88.57 E-value=0.029 Score=40.40 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=31.5
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++|+|..+ .+..++.++.++|| +||.|.+.
T Consensus 22 ~~l~~~f~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 59 (85)
T 3mdf_A 22 KVLHAAFIPFGDITDI-QIPLDYETEKHRGF-AFVEFELA 59 (85)
T ss_dssp HHHHHHHGGGSCEEEE-ECCEETTTTEECSE-EEEEESSH
T ss_pred HHHHHHHhccCCEEEE-EEEECCCCCccccE-EEEEECCH
Confidence 4689999999999887 46667889999999 88988543
No 285
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=88.42 E-value=0.03 Score=40.65 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=32.1
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|.++|+|..+ .+..++.++.++|| +||.|.+..
T Consensus 21 ~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~~ 59 (89)
T 3ucg_A 21 EELEAHFHGCGSVNRV-TILCDKFSGHPKGF-AYIEFSDKE 59 (89)
T ss_dssp HHHHHHHGGGCCEEEE-EEEESCSSSSCCEE-EEEEESSTH
T ss_pred HHHHHHHHhCCCEEEE-EEEecCCCCCcceE-EEEEECCHH
Confidence 4689999999999887 46667789999999 999986643
No 286
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=88.35 E-value=0.11 Score=38.73 Aligned_cols=37 Identities=16% Similarity=0.419 Sum_probs=29.9
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCC-CCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLP-HEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p-~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+| |..+ -++.++ .+++++|| +||.|.+.
T Consensus 34 ~~l~~~F~~~G-i~~v-~i~~~~~~~g~~~g~-afV~f~~~ 71 (100)
T 2j76_E 34 ESIKEFFRGLN-ISAV-RLPREPSNPERLKGF-GYAEFEDL 71 (100)
T ss_dssp SHHHHHSCSSC-EEEE-ECSCCTTTTCCCCSC-EEEEECCH
T ss_pred HHHHHHHHhcC-CeEE-EEEecCCcCCccCeE-EEEEECCH
Confidence 46899999999 8777 356666 68999999 99998654
No 287
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=87.71 E-value=0.068 Score=42.35 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=32.0
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ .+..++.++.++|| +||.|.+.
T Consensus 78 ~~l~~~f~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 115 (140)
T 2ku7_A 78 KVLHAAFIPFGDITDI-QIPLDYETEKHRGF-AFVEFELA 115 (140)
T ss_dssp HHHHHHHGGGSCEEEE-ECCCCTTTCCCCSE-EEEEESCH
T ss_pred HHHHHHHHhcCCEEEE-EEeecCCCCCcCcE-EEEEECCH
Confidence 4689999999999887 46678889999999 99998554
No 288
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=87.54 E-value=0.038 Score=42.43 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=31.7
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+++|..+ .+..++.++.++|| +||.|.+.
T Consensus 40 ~~l~~~F~~~G~i~~v-~i~~~~~~g~~~g~-afV~f~~~ 77 (115)
T 2cpz_A 40 QDLLQMFMPFGNVVSA-KVFIDKQTNLSKCF-GFVSYDNP 77 (115)
T ss_dssp HHHHHHHGGGSCCSEE-EEEECSSSCSEEEE-EEEECSSH
T ss_pred HHHHHHHHhcCCeEEE-EEEECCCCCCcCcc-EEEEECCH
Confidence 4699999999999887 46667888999999 89998553
No 289
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=87.47 E-value=0.053 Score=40.37 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=31.1
Q ss_pred hhhhhcCCCCCCCCC--------CCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPY--------LPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~--------~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+|+|.. + .+..++.+++++|| +||.|.+.
T Consensus 28 ~~l~~~F~~~G~i~~~~~~~~~~v-~i~~~~~~g~~~G~-afV~f~~~ 73 (99)
T 2la6_A 28 ESVADYFKQIGIIKTNKKTGQPMI-NLYTDRETGKLKGE-ATVSFDDP 73 (99)
T ss_dssp HHHHHHHTTTSCBCEETTTTEESE-EEEECTTTCSEEEE-EEEEBSSH
T ss_pred HHHHHHHHHhCCEeeccccccccE-EEEecCCCCCeeeE-EEEEECCH
Confidence 468999999999987 4 36667788999999 99998553
No 290
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.28 E-value=0.15 Score=39.01 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=27.6
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++ .|..+ -|+.++. ++++|| +||.|.+.
T Consensus 31 ~dl~~~F~~~-~v~~v-~i~~d~~-g~~~G~-afV~F~~~ 66 (109)
T 2dnn_A 31 NDVRDFFHGL-RVDAV-HLLKDHV-GRNNGN-GLVKFLSP 66 (109)
T ss_dssp HHHHHHTTTS-CCCEE-EECCCTT-CCCCSE-EEEECSSH
T ss_pred HHHHHHhccC-CeeEE-EEEECCC-CCCCeE-EEEEECCH
Confidence 4799999999 67665 3455664 999999 99999553
No 291
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=86.96 E-value=0.069 Score=40.34 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=29.5
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|+++|+|..+. +. ..+++++|| +||.|.+..
T Consensus 36 ~~l~~~F~~~G~v~~v~-i~--~~~g~~~G~-afV~f~~~~ 72 (105)
T 2nlw_A 36 NVIHKIFSKFGKITNDF-YP--EEDGKTKGY-IFLEYASPA 72 (105)
T ss_dssp HHHHHHHGGGSCEEEEE-CC--CBTTBSCCE-EEEEECSSS
T ss_pred HHHHHHHhcCCCEEEEE-ee--CCCCCeeeE-EEEEECCHH
Confidence 56899999999998874 32 468899999 999996654
No 292
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=86.61 E-value=0.031 Score=42.16 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=31.8
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+|+|..+ .++.++.|+.++|| +||.|.+.
T Consensus 38 ~~l~~~f~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 75 (106)
T 1p27_B 38 EDIHDKFAEYGEIKNI-HLNLDRRTGYLKGY-TLVEYETY 75 (106)
T ss_dssp HHHHHHHGGGSCEEEE-EEEECTTTSSEEEE-EEEEESCH
T ss_pred HHHHHHHhccCCeEEE-EEEecCCCCceeeE-EEEEECCH
Confidence 4589999999999887 46678889999999 89998553
No 293
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.58 E-value=0.036 Score=41.58 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=31.6
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+|+|..+ .+..++.++.++|| +||.|.+.
T Consensus 23 ~~l~~~f~~~G~i~~~-~i~~~~~~g~~~g~-afV~f~~~ 60 (104)
T 1p1t_A 23 EQLKDIFSEVGPVVSF-RLVYDRETGKPKGY-GFCEYQDQ 60 (104)
T ss_dssp HHHHHHHHTTSCCSEE-EEEEETTTTEEEEE-EEEECSCH
T ss_pred HHHHHHHHhcCCeeEE-EEEeCCCCCccceE-EEEEECCH
Confidence 4689999999999887 46667788999999 99998654
No 294
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.14 E-value=0.036 Score=40.82 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=31.6
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ .+..++.++.++|| +||.|.+.
T Consensus 30 ~~l~~~f~~~G~v~~v-~i~~~~~~~~~~g~-afV~f~~~ 67 (95)
T 2cqc_A 30 RDLREVFSKYGPIADV-SIVYDQQSRRSRGF-AFVYFENV 67 (95)
T ss_dssp HHHHHHHHTTSCEEEE-EEEECSSSSSEEEE-EEEEESSH
T ss_pred HHHHHHHHhcCCeeEE-EEEEcCCCCCcccE-EEEEECCH
Confidence 4689999999999887 46678888999999 88888543
No 295
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=86.00 E-value=0.036 Score=41.50 Aligned_cols=39 Identities=21% Similarity=0.407 Sum_probs=31.7
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFE 48 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~~ 48 (363)
.+|..+|..+|+|..+ .++.++ ++.++|| +||.|.+...
T Consensus 24 ~~l~~~F~~~G~i~~v-~i~~~~-~g~~~g~-afV~f~~~~~ 62 (102)
T 2xs2_A 24 TEIRSFFARYGSVKEV-KIITDR-TGVSKGY-GFVSFYNDVD 62 (102)
T ss_dssp HHHHHHHGGGSCEEEE-EEEECT-TSCEEEE-EEEEESSCCC
T ss_pred HHHHHHHHhCCCeEEE-EEEECC-CCCccce-EEEEECCHHH
Confidence 4689999999999887 456666 8999999 9999976543
No 296
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=85.84 E-value=0.034 Score=40.20 Aligned_cols=38 Identities=32% Similarity=0.468 Sum_probs=31.4
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|+++++|..+ -+..++.++.++|| +||.|.+.
T Consensus 21 ~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 58 (87)
T 3bs9_A 21 AAIAAAFAPFGRISDA-RVVKDMATGKSKGY-GFVSFFNK 58 (87)
T ss_dssp HHHHHHHGGGSCEEEE-EEEECTTTCCEEEE-EEEEESSH
T ss_pred HHHHHHHHhcCCEeEE-EEEecCCCCccceE-EEEEECCH
Confidence 4689999999999887 46667788999999 89998553
No 297
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.83 E-value=0.065 Score=40.58 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=32.0
Q ss_pred hhhhhcCCCCCC-CCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDP-VPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~p-i~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|..+++ |..+..+..+..++.++|| +||.|.+..
T Consensus 23 ~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~-afV~f~~~~ 63 (109)
T 2dis_A 23 EEILEEIAKVTEGVLDVIVYASAADKMKNRGF-AFVEYESHR 63 (109)
T ss_dssp HHHHHHHHHHSTTEEEEECCSSSCTTTTTCCE-EEEEESSHH
T ss_pred HHHHHHHHHhcCCceEEEEEccCCCCCCcCcE-EEEEecCHH
Confidence 468999999998 8877544477888999999 999986643
No 298
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=85.46 E-value=0.12 Score=41.30 Aligned_cols=37 Identities=5% Similarity=0.010 Sum_probs=29.3
Q ss_pred hhhhhcCCCCCC---CCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDP---VPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~p---i~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++ |..+ -|..++. ++++|| +||.|.+.
T Consensus 59 ~dL~~~F~~~G~v~~v~~v-~i~~d~~-g~srG~-aFV~F~~~ 98 (136)
T 2hgl_A 59 EDVQNFLSDCTIHDGAAGV-HFIYTRE-GRQSGE-AFVELGSE 98 (136)
T ss_dssp HHHHHHTTTCCCSSSSTTE-EEEECSS-SCEEEE-EEEECSSH
T ss_pred HHHHHHHHHhCCcCceeEE-EEEECCC-CCCCeE-EEEEECCH
Confidence 469999999999 5666 3556666 999999 99999654
No 299
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=85.43 E-value=0.043 Score=45.24 Aligned_cols=38 Identities=8% Similarity=0.191 Sum_probs=31.9
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++|+|..| .|..++.|+.++|| +||.|.+.
T Consensus 87 ~~L~~~F~~~G~i~~v-~i~~~~~~g~~~g~-afV~f~~~ 124 (165)
T 1rk8_A 87 DEIQEKFCDYGEIKNI-HLNLDRRTGFSKGY-ALVEYETH 124 (165)
T ss_dssp HHHHHHHGGGSCEEEE-EEEECTTTSSEEEE-EEEEESSH
T ss_pred HHHHHHhhcCCCEEEE-EEEecCCCCcEeeE-EEEEECCH
Confidence 4689999999999888 46667889999999 99998553
No 300
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=85.36 E-value=0.04 Score=41.99 Aligned_cols=38 Identities=18% Similarity=0.387 Sum_probs=31.3
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++|+|..+ .+..++.++.++|| +||.|.+.
T Consensus 41 ~~l~~~F~~~G~i~~v-~i~~~~~~g~~~g~-afV~F~~~ 78 (108)
T 2jrs_A 41 DMLRGIFEPFGRIESI-QLMMDSETGRSKGY-GFITFSDS 78 (108)
T ss_dssp HHHHHHHTTTSCEEEE-EEEEETTTTEEEEE-EEEEESCH
T ss_pred HHHHHHHHhcCCeEEE-EEEEcCCCCccceE-EEEEECCH
Confidence 4689999999999887 46667788999999 89998554
No 301
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=84.97 E-value=0.046 Score=42.55 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=32.2
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
..+|..+|..+|+|..+ .+..++.++.++|| +||.|.+.
T Consensus 50 ~~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 88 (124)
T 2jwn_A 50 AQDLEAHFSSCGSINRI-TILCDKFSGHPKGY-AYIEFAER 88 (124)
T ss_dssp HHHHHHHHHTTSCEEEE-EEEEECTTSSCEEE-EEEEESSH
T ss_pred HHHHHHHHHhcCCEEEE-EEEecCCCCCcccE-EEEEECCH
Confidence 35689999999999887 46667789999999 99999654
No 302
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=84.93 E-value=0.13 Score=40.03 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=30.1
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+|+|..+ .+..++ ++.++|| +||.|.+.
T Consensus 50 ~~l~~~F~~~G~v~~v-~i~~~~-~g~~~g~-afV~f~~~ 86 (124)
T 2kt5_A 50 ADIQELFAEFGTLKKA-AVDYDR-SGRSLGT-ADVHFERR 86 (124)
T ss_dssp HHHHHHHHTTSCCSEE-EEECCS-SSSCCSE-EEEEESSH
T ss_pred HHHHHHHHhcCCeeEE-EEEECC-CCCEeeE-EEEEECCH
Confidence 4689999999999887 355566 8999999 89998553
No 303
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.67 E-value=0.082 Score=40.38 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=30.0
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ -+..++ ++.++|| +||.|.+.
T Consensus 40 ~~l~~~F~~~G~i~~~-~i~~~~-~g~~~g~-afV~f~~~ 76 (114)
T 1x5o_A 40 QELENMLKPFGQVIST-RILRDS-SGTSRGV-GFARMEST 76 (114)
T ss_dssp HHHHHTTTTTSCEEEE-EEEECS-SSCEEEE-EEEEESCH
T ss_pred HHHHHHHHhcCCEEEE-EEEECC-CCCcceE-EEEEECCH
Confidence 4689999999999887 355566 8999999 89998543
No 304
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=84.36 E-value=1.8 Score=30.24 Aligned_cols=68 Identities=10% Similarity=0.168 Sum_probs=43.1
Q ss_pred eEEEc-CCCCCCCHHHHHHHHHhhCC-----ccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCEEEEEE
Q psy16184 103 TLFIA-RVNYDTSESKLRREFEVYGP-----IKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176 (363)
Q Consensus 103 ~l~V~-nL~~~~t~~~L~~~F~~~G~-----i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~i~g~~i~V~ 176 (363)
+|||. +-...++..+|..++..-+. |-.|.|.. .|.||+... ..|..++..|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 56664 22345677788888775543 44666633 389998865 45778888899999999999988
Q ss_pred eec
Q psy16184 177 VER 179 (363)
Q Consensus 177 ~a~ 179 (363)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 305
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=84.16 E-value=0.066 Score=40.23 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=29.5
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+++|..+. +..++ ++.++|| +||.|.+.
T Consensus 30 ~~l~~~F~~~G~i~~v~-i~~~~-~g~~~g~-afV~f~~~ 66 (105)
T 2dnh_A 30 EDVLRLFQPFGVIDECT-VLRGP-DGSSKGC-AFVKFSSH 66 (105)
T ss_dssp HHHHHHHTTTSCEEEEE-EEECS-SSCEEEE-EEEEESSH
T ss_pred HHHHHHHHhcCCeEEEE-EEECC-CCCcCcE-EEEEeCCH
Confidence 46899999999998873 55566 7899999 88888553
No 306
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=83.88 E-value=0.05 Score=41.72 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=31.6
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+++|..+ .+..++.++.++|| +||.|.+.
T Consensus 30 ~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 67 (115)
T 2dgo_A 30 EDIKAAFAPFGRISDA-RVVKDMATGKSKGY-GFVSFFNK 67 (115)
T ss_dssp HHHHHHHGGGSCEEEE-EEEECTTTCCEEEE-EEEEESSH
T ss_pred HHHHHHHHhcCCeEEE-EEEEcCCCCCcceE-EEEEECCH
Confidence 4689999999999887 46667789999999 99998554
No 307
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.87 E-value=0.079 Score=39.41 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=29.6
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ -+..++ +++++|| +||.|.+.
T Consensus 32 ~~l~~~F~~~G~i~~v-~i~~~~-~g~~~g~-afV~f~~~ 68 (100)
T 2do4_A 32 EELEEICKAHGTVKDL-RLVTNR-AGKPKGL-AYVEYENE 68 (100)
T ss_dssp HHHHHHHTTTSCEEEE-EEEECT-TSCEEEE-EEEEESSH
T ss_pred HHHHHHHHhCCCeEEE-EEEECC-CCCEEeE-EEEEECCH
Confidence 4699999999999887 355566 8999999 89988553
No 308
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=82.67 E-value=0.19 Score=36.68 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=25.6
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|+++|+|..+. ++. .++|| |||.|.+.
T Consensus 26 ~~L~~~F~~~G~i~~v~-i~~-----~srGf-aFV~F~~~ 58 (89)
T 3d2w_A 26 EELQQFFCQYGEVVDVF-IPK-----PFRAF-AFVTFADD 58 (89)
T ss_dssp HHHHHHHTTTSCEEEEE-CCS-----SCCSE-EEEEESCH
T ss_pred HHHHHHHhccCCEEEEE-Eee-----CCCCE-EEEEECCH
Confidence 45899999999998874 332 38999 99999654
No 309
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=82.25 E-value=0.19 Score=42.03 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=30.1
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+++|..|. |..++ ++.++|| +||.|.+.
T Consensus 103 ~~L~~~F~~~G~I~~v~-i~~d~-~g~~kG~-afV~F~~~ 139 (177)
T 2f3j_A 103 ADIQELFAEFGTLKKAA-VDYDR-SGRSLGT-ADVHFERR 139 (177)
T ss_dssp HHHHHHHHHTSCCSEEE-ECCCT-TSSCSCC-EEEEESCH
T ss_pred HHHHHHHHhcCCeEEEE-EEECC-CCCEeeE-EEEEeCCH
Confidence 46899999999998874 55566 8999999 89998553
No 310
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=82.03 E-value=0.11 Score=38.96 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=29.8
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..++ |..+ -++.++.|++++|| +||.|.+.
T Consensus 30 ~~l~~~F~~~g-i~~v-~i~~~~~~g~~~g~-afV~f~~~ 66 (103)
T 2dng_A 30 GDIDAIFKDLS-IRSV-RLVRDKDTDKFKGF-CYVEFDEV 66 (103)
T ss_dssp HHHHHHTTTSC-EEEE-EEEECSSSCSEEEE-EEEEESSH
T ss_pred HHHHHHHHhCC-ceEE-EEeecCCCCccceE-EEEEECCH
Confidence 46899999995 7766 46678889999999 99998654
No 311
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=81.92 E-value=0.068 Score=40.29 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=29.6
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ .+..++ ++.++|| +||.|.+.
T Consensus 44 ~~l~~~F~~~G~i~~v-~i~~~~-~g~~~g~-afV~f~~~ 80 (107)
T 3ulh_A 44 ADIQELFAEFGTLKKA-AVHYDR-SGRSLGT-ADVHFERK 80 (107)
T ss_dssp HHHHHHHHTTSCEEEE-EEEECT-TSCEEEE-EEEEESSH
T ss_pred HHHHHHHHhcCCeEEE-EEEECC-CCCcceE-EEEEECCH
Confidence 4689999999999877 355566 8999999 89988543
No 312
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=81.05 E-value=0.081 Score=43.02 Aligned_cols=38 Identities=11% Similarity=0.248 Sum_probs=31.7
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+++|..| -|..++.|+.++|| +||.|.+.
T Consensus 54 ~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 91 (156)
T 1h2v_Z 54 EQIYELFSKSGDIKKI-IMGLDKMKKTACGF-CFVEYYSR 91 (156)
T ss_dssp HHHHHHHGGGSCEEEE-EEEECTTTCCEEEE-EEEEESSH
T ss_pred HHHHHHHHhcCCeEEE-EEEecCCCCccceE-EEEEECCH
Confidence 4689999999999887 46668889999999 88988543
No 313
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=80.59 E-value=0.094 Score=37.79 Aligned_cols=38 Identities=13% Similarity=0.334 Sum_probs=29.3
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCC-CCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKK-THGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~-s~g~~g~v~f~~~ 46 (363)
.+|..+|.++|+|..+ .+..++.++. ++|| +||.|.+.
T Consensus 19 ~~l~~~F~~~G~i~~~-~i~~~~~~~~~~~g~-afV~f~~~ 57 (88)
T 4a8x_A 19 DHIMEIFSTYGKIKMI-DMPVERMHPHLSKGY-AYVEFENP 57 (88)
T ss_dssp HHHHHHHHTTSCEEEE-ECCEETTEEEEECSE-EEEEESSH
T ss_pred HHHHHHHHhCCCEEEE-EEEeCCCCCCCCCcE-EEEEEecH
Confidence 4689999999999877 3555666655 9999 89998543
No 314
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=80.49 E-value=0.11 Score=39.47 Aligned_cols=40 Identities=10% Similarity=-0.069 Sum_probs=31.3
Q ss_pred CChhhhhcCCCCCCCCCCCCCCCCCCC-CCCCCCccccccccc
Q psy16184 5 LPPNLLALFAPRDPVPYLPPVEKLPHE-KKTHGYSGIAAFLNE 46 (363)
Q Consensus 5 ~p~~l~~~f~~~~pi~~~~p~~~~p~t-~~s~g~~g~v~f~~~ 46 (363)
+..+|..+|+++|+|..+ -|+.++.+ +.++|| +||.|.+.
T Consensus 26 ~~~dl~~~f~~~G~V~~v-~i~~~~~~~~~~~G~-~FV~f~~~ 66 (105)
T 2pe8_A 26 LEVETKEECEKYGKVGKC-VIFEIPGAPDDEAVR-IFLEFERV 66 (105)
T ss_dssp CHHHHHHHGGGGSCEEEE-EEEECSSCCTTTSEE-EEEEESSH
T ss_pred HHHHHHHHHHhcCCEEEE-EEecCCCCCCCCcEE-EEEEECCH
Confidence 446789999999999987 35556654 689999 99999554
No 315
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.19 E-value=0.61 Score=33.48 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=25.4
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+. +.. .++|| +||.|.+.
T Consensus 20 ~~l~~~F~~~G~i~~v~-i~~-----~~~g~-afV~f~~~ 52 (88)
T 1wf0_A 20 DELREFFSQYGDVMDVF-IPK-----PFRAF-AFVTFADD 52 (88)
T ss_dssp HHHHHHSTTTSCCCEEE-CCS-----SCCSC-CEEECSCH
T ss_pred HHHHHHHHHcCCeeEEE-Eec-----CCCCE-EEEEECCH
Confidence 46999999999998874 322 27899 99998554
No 316
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.13 E-value=0.13 Score=40.32 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=28.5
Q ss_pred hhhhhcCCCCCCCC----CCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDPVP----YLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~pi~----~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|.++++|. .+ -|..+ .+++++|| +||.|.+..
T Consensus 38 ~dl~~~F~~~g~v~g~v~~v-~i~~d-~~gr~~G~-aFV~F~~~~ 79 (123)
T 2dha_A 38 EEVVAFFGQHCPITGGKEGI-LFVTY-PDGRPTGD-AFVLFACEE 79 (123)
T ss_dssp HHHHHHHHTTSCCTTGGGGE-EEEEC-TTSCEEEE-EEECCSSHH
T ss_pred HHHHHHHHhhCCccCCcceE-EEEEC-CCCCEeeE-EEEEECCHH
Confidence 46999999999873 33 24445 48999999 999996643
No 317
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.10 E-value=0.065 Score=40.20 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=30.2
Q ss_pred hhhhhcCCC-CCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAP-RDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~-~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.+ +++|..+ .++.++ ++.++|| +||.|.+.
T Consensus 24 ~~l~~~F~~~~G~v~~v-~i~~~~-~g~~~g~-afV~f~~~ 61 (104)
T 2dhg_A 24 GMLYEFFVKVYPSCRGG-KVVLDQ-TGVSKGY-GFVKFTDE 61 (104)
T ss_dssp HHHHHHHHHHCTTEEEE-EEEECT-TCCEEEE-EEEEESCH
T ss_pred HHHHHHHHHhCCCeEEE-EEEECC-CCCccce-EEEEECCH
Confidence 468999999 9999887 356677 8999999 99998654
No 318
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=80.04 E-value=0.16 Score=39.22 Aligned_cols=38 Identities=8% Similarity=0.013 Sum_probs=28.4
Q ss_pred hhhhhcCCCCCC---CCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDP---VPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~p---i~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|..+++ |..+ -+..++. ++++|| +||.|.+..
T Consensus 32 ~~l~~~F~~~G~~~~v~~v-~i~~~~~-g~~~G~-afV~F~~~~ 72 (118)
T 2db1_A 32 EDVQNFLSDCTIHDGVAGV-HFIYTRE-GRQSGE-AFVELESED 72 (118)
T ss_dssp HHHHHHTTTSCBTTGGGGE-EEEECSS-SCEEEE-EEEEBSSHH
T ss_pred HHHHHHHHHcCCccCceeE-EEEECCC-CCCCeE-EEEEECCHH
Confidence 469999999998 4555 2444555 899999 999996643
No 319
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=79.60 E-value=0.05 Score=40.62 Aligned_cols=37 Identities=8% Similarity=-0.037 Sum_probs=29.5
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+++|.. .++.++.++.++|| +||.|.+.
T Consensus 32 ~~l~~~F~~~G~v~~--~~~~~~~~g~~~g~-afV~f~~~ 68 (101)
T 1fj7_A 32 AELKVAISELFAKND--LAVVDVRTGTNRKF-GYVDFESA 68 (101)
T ss_dssp HHHHHHHHHHHHHHT--CCCCEEEEETTTTE-EEEEESSH
T ss_pred HHHHHHHHHhCCcce--EEEecCCCCCcCcE-EEEEECCH
Confidence 458889999998877 35567788999999 99998553
No 320
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=79.43 E-value=0.032 Score=44.14 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=25.2
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 9 LLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 9 l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
|..+|+++|+|..+. + +.+++++|| +||.|.+.
T Consensus 50 L~~~F~~~G~I~~v~-i---~~~~~~rG~-aFV~F~~~ 82 (127)
T 2a3j_A 50 LYALASSQGDILDIV-V---DLSDDNSGK-AYIVFATQ 82 (127)
T ss_dssp HHHHHHHHSCEEEEE-E---CCCCSSCCC-EEEEESSH
T ss_pred HHHHhccCCCeEEEE-e---ccCCCcCCE-EEEEECCH
Confidence 457999999997652 2 347889999 99999653
No 321
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.44 E-value=0.18 Score=37.65 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=28.3
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+. +..+ ++.++|| +||.|.+.
T Consensus 30 ~~l~~~F~~~G~i~~v~-i~~~--~g~~~g~-afV~f~~~ 65 (103)
T 2d9p_A 30 ERLRKAFSPFGTITSAK-VMME--GGRSKGF-GFVCFSSP 65 (103)
T ss_dssp HHHHHTTTTTSCEEEEE-EEEC--SSSEEEE-EEEEESSH
T ss_pred HHHHHHHHhcCCEEEEE-EEcC--CCCcCEE-EEEEECCH
Confidence 46899999999998874 3334 7899999 89988543
No 322
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.96 E-value=0.16 Score=38.17 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=26.7
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
..+|..+|.++|+|..+. |+ ++++|| +||.|.+.
T Consensus 31 e~~L~~~F~~~G~V~~v~-i~-----~~~rGf-aFVeF~~~ 64 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLV-LS-----SKKPGT-AVVEFATV 64 (100)
T ss_dssp HHHHHHHHHTTSCEEEEE-EE-----SSSSSE-EEEEESCH
T ss_pred HHHHHHHHHhcCCEEEEE-Ec-----cCCCCE-EEEEECCH
Confidence 467999999999998773 22 478999 99998553
No 323
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.86 E-value=0.14 Score=39.09 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=28.2
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+. +.....++.++|| +||.|.+.
T Consensus 40 ~~l~~~f~~~G~v~~~~-~~~~~~~g~~~g~-afV~f~~~ 77 (115)
T 2cpx_A 40 RDLVSLFARFQEKKGPP-IQFRMMTGRMRGQ-AFITFPNK 77 (115)
T ss_dssp HHHHHHTHHHHHSSSSC-CEEEEECSSSCSE-EEEECSSH
T ss_pred HHHHHHHHHhCCccceE-EEEEcCCCccceE-EEEEECCH
Confidence 46889999999987652 3333348999999 99998553
No 324
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.48 E-value=0.62 Score=34.41 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=25.9
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|.. ..+ .+++++|| +||.|.+.
T Consensus 30 ~~l~~~F~~~g~v~~----~~~-~~g~~~g~-afV~f~~~ 63 (101)
T 2fc9_A 30 ETLQEVFEKATFIKV----PQN-QNGKSKGY-AFIEFASF 63 (101)
T ss_dssp HHHHHHCSSCSEEEC----CBC-SSSCBCSE-EEEECSSH
T ss_pred HHHHHHHHhCCEEEE----EEC-CCCCEeeE-EEEEECCH
Confidence 468999999998832 233 57899999 89998553
No 325
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.39 E-value=0.064 Score=39.73 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=29.3
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCC---CCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPH---EKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~---t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|+++++|..+. +..++. |+.++|| +||.|.+.
T Consensus 20 ~~l~~~F~~~G~i~~v~-i~~~~~~~gt~~~~g~-afV~f~~~ 60 (98)
T 2cpf_A 20 ETLKGVFSKVGAIKSCT-ISKKKNKAGVLLSMGF-GFVEYKKP 60 (98)
T ss_dssp HHHHHHHHTTSCEEEEE-EEEEECTTCCEEEEEE-EEEEESSH
T ss_pred HHHHHHHHhcCCeEEEE-EEecCCCCCCcCcccE-EEEEECCH
Confidence 46899999999998773 444554 6789999 89998553
No 326
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=77.30 E-value=0.11 Score=38.17 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=29.0
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+ .+..++. +.++|| +||.|.+.
T Consensus 31 ~~l~~~F~~~G~i~~v-~i~~~~~-g~~~g~-afV~f~~~ 67 (95)
T 2ywk_A 31 EILYELFLQAGPLTKV-TICKDRE-GKPKSF-GFVCFKHP 67 (95)
T ss_dssp HHHHHHHGGGSCEEEE-EEEECTT-SCEEEE-EEEEESST
T ss_pred HHHHHHHHhcCCEEEE-EEEECCC-CCCceE-EEEEECCH
Confidence 4689999999999887 3555554 889999 89988554
No 327
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.62 E-value=0.54 Score=35.48 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=27.3
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+|+|..+. +..++ +.++|| +||.|.+.
T Consensus 44 ~~l~~~F~~~G~i~~v~-i~~~~--~~~kg~-afV~f~~~ 79 (109)
T 2err_A 44 PDLRQMFGQFGKILDVE-IIFNE--RGSKGF-GFVTFENS 79 (109)
T ss_dssp HHHHHHGGGTCCCSCEE-ECCBT--TBCTTE-EEEECCCS
T ss_pred HHHHHHHHhcCCEEEEE-EEECC--CCCceE-EEEEECCH
Confidence 46899999999998874 44343 458999 89998554
No 328
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.92 E-value=0.52 Score=35.72 Aligned_cols=39 Identities=8% Similarity=0.210 Sum_probs=28.5
Q ss_pred Chhhh---hcCCCCCCCCCCCCCCCCCCC---CCCCCCccccccccc
Q psy16184 6 PPNLL---ALFAPRDPVPYLPPVEKLPHE---KKTHGYSGIAAFLNE 46 (363)
Q Consensus 6 p~~l~---~~f~~~~pi~~~~p~~~~p~t---~~s~g~~g~v~f~~~ 46 (363)
..+|. .+|.++++|..+. ++.++.+ +.++|| +||.|.+.
T Consensus 29 ~~~l~~~~~~F~~~G~i~~v~-i~~~~~~~~~~~~~G~-afV~f~~~ 73 (111)
T 2cpi_A 29 DPEVLKRPEYFGKFGKIHKVV-INNSTSYAGSQGPSAS-AYVTYIRS 73 (111)
T ss_dssp CHHHHHSTTTTTTTSCEEEEE-EECCSSCCSSSCCCEE-EEEEESSH
T ss_pred HHHHHHHHHHhhccCCEEEEE-EecCCCcCccCCCCeE-EEEEECcH
Confidence 34677 9999999998873 4555554 456699 89998553
No 329
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=75.78 E-value=19 Score=25.94 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=52.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCC-------ceeCCE
Q psy16184 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADG-------KKIDGR 171 (363)
Q Consensus 99 ~~~~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g-------~~i~g~ 171 (363)
.+.|-|-|-|+|..+-..++.-.....|---.|..+. |-|.|.|.+.++..-||..|-+ .+|.|.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 4577899999999998888877777788766666642 7899999999999999887622 245566
Q ss_pred EEEEE
Q psy16184 172 RVLVD 176 (363)
Q Consensus 172 ~i~V~ 176 (363)
.+.|-
T Consensus 82 icdvi 86 (129)
T 4eyt_A 82 ICDVI 86 (129)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 55543
No 330
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.62 E-value=0.19 Score=38.26 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=29.1
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+++|..+. +..++ +++++|| +||.|.+.
T Consensus 30 ~~l~~~f~~~G~i~~~~-i~~~~-~g~~~g~-afV~f~~~ 66 (114)
T 2do0_A 30 KKLKEVFSMAGVVVRAD-ILEDK-DGKSRGI-GTVTFEQS 66 (114)
T ss_dssp HHHHHHHTTTSCEEEEE-EEECT-TCSEEEE-EEEEESSH
T ss_pred HHHHHHHHhcCCeEEEE-EEECC-CCCeeeE-EEEEECCH
Confidence 46899999999998773 55555 5889999 88988553
No 331
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=75.29 E-value=0.068 Score=42.47 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=30.9
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+++|..+ -+..++.+++++|| +||.|.+.
T Consensus 57 ~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~-afV~f~~~ 94 (139)
T 1u6f_A 57 VQLRQLFERYGPIESV-KIVCDRETRQSRGY-GFVKFQSG 94 (139)
T ss_dssp HHHHHHHHHHSCEEEE-EEEEETTTTEEEEE-EEEEESSH
T ss_pred HHHHHHHHhcCCeEEE-EEEEcCCCCCcceE-EEEEECCH
Confidence 4689999999999887 35667788999999 89998543
No 332
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.12 E-value=0.3 Score=35.42 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=27.7
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++ +|..+. ++.+ .+++++|| +||.|.+.
T Consensus 25 ~~l~~~F~~~-~i~~v~-i~~~-~~g~~~g~-afV~f~~~ 60 (91)
T 2dgw_A 25 KNVMEFLAPL-KPVAIR-IVRN-AHGNKTGY-IFVDFSNE 60 (91)
T ss_dssp HHHHHHHTTS-CCSEEE-EEEC-TTSCEEEE-EEEECSSH
T ss_pred HHHHHHHhhC-CceEEE-EEEC-CCCCCceE-EEEEECCH
Confidence 4689999999 777663 4455 68999999 89998554
No 333
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.82 E-value=0.42 Score=35.48 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=26.8
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+++|..+. ++.++. .++|| +||.|.+.
T Consensus 30 ~~l~~~f~~~G~v~~v~-i~~~~~--~~~g~-afV~f~~~ 65 (103)
T 2cq3_A 30 PDLRQMFGQFGKILDVE-IIFNER--GSKGF-GFVTFENS 65 (103)
T ss_dssp HHHHHHGGGTSCEEEEE-EECCTT--TTCCE-EEEEESCH
T ss_pred HHHHHHHHhcCCeEEEE-EEecCC--CCcEE-EEEEECCH
Confidence 46899999999998773 444443 48999 88888553
No 334
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.38 E-value=0.85 Score=34.93 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=25.1
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
..+|..+|.++|+|..+- |+ +++|| +||.|.+.
T Consensus 40 e~~L~~lF~~fG~V~~v~-i~------~~kg~-aFVef~~~ 72 (112)
T 1x4f_A 40 DSAVLKLAEPYGKIKNYI-LM------RMKSQ-AFIEMETR 72 (112)
T ss_dssp SHHHHTTTTTTSCCSEEE-EE------TTTTE-EEEECSSH
T ss_pred HHHHHHHHHhcCCEEEEE-Ee------cCCCE-EEEEECCH
Confidence 456999999999999873 22 45799 88888543
No 335
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.37 E-value=0.33 Score=36.14 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=26.5
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+. +..++. .++|| +||.|.+.
T Consensus 30 ~~l~~~F~~~G~i~~v~-i~~~~~--~~~g~-afV~f~~~ 65 (103)
T 2cqi_A 30 VLILQLFSQIGPCKSCK-MITEHT--SNDPY-CFVEFYEH 65 (103)
T ss_dssp HHHHHHHHHHSCEEEEE-EECCCC--SSCCE-EEEEESSH
T ss_pred HHHHHHHHhcCCEeEEE-EEecCC--CCCCE-EEEEECCH
Confidence 46899999999998773 444443 36899 88988543
No 336
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=66.01 E-value=0.77 Score=34.59 Aligned_cols=38 Identities=8% Similarity=-0.006 Sum_probs=28.8
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCC--CCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHE--KKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t--~~s~g~~g~v~f~~~ 46 (363)
.+|...|+++|+|..+ -|+.++.+ +.++|| +||.|.+.
T Consensus 30 ~dl~~~f~k~G~V~~v-~i~~~~~~~~~~~~G~-~fV~f~~~ 69 (105)
T 3v4m_A 30 EDVRDECSKYGLVKSI-EIPRPVDGVEVPGCGK-IFVEFTSV 69 (105)
T ss_dssp HHHHHHHHTTSCEEEE-ECCCCBTTBCCTTTTE-EEEEESSH
T ss_pred HHHHHHHHccCCEEEE-EEeccCCCCCcCCcEE-EEEEECCH
Confidence 4788999999999987 35555544 468899 89998554
No 337
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=65.78 E-value=0.27 Score=35.63 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=28.0
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++++|..+. +.. .++.++|| +||.|.+.
T Consensus 23 ~~l~~~f~~~G~v~~~~-i~~--~~g~~~g~-afV~f~~~ 58 (92)
T 2dgv_A 23 KMLKDKFNECGHVLYAD-IKM--ENGKSKGC-GVVKFESP 58 (92)
T ss_dssp HHHHHHHHTTSCEEEEE-EEE--SSSCEEEE-EEEEESSH
T ss_pred HHHHHHHHhcCCEEEEE-EEc--cCCCcceE-EEEEECCH
Confidence 46899999999998774 333 37889999 89998553
No 338
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.75 E-value=0.66 Score=34.82 Aligned_cols=35 Identities=6% Similarity=0.198 Sum_probs=26.5
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..+++|..+. + +.++.++|| +||.|.+.
T Consensus 37 ~~l~~~F~~~G~v~~~~-i---~~~~~~~g~-afV~f~~~ 71 (109)
T 1x4a_A 37 KDIEDVFYKYGAIRDID-L---KNRRGGPPF-AFVEFEDP 71 (109)
T ss_dssp HHHHHHHGGGSCEEEEE-E---CCSSSSSCC-EEEEESCH
T ss_pred HHHHHHHHhcCCeEEEE-E---EECCCCCcE-EEEEECCH
Confidence 46899999999988763 2 335678999 88888543
No 339
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=65.21 E-value=0.38 Score=36.26 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=26.9
Q ss_pred hhhhhcC-CCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALF-APRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f-~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|...| +++|+|..+. |+.+. +++++|| +||.|.+.
T Consensus 41 edl~~~f~~~~G~V~~v~-i~~~~-~~~~~G~-~fV~f~~~ 78 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMN-VCDNL-GDHLVGN-VYVKFRRE 78 (104)
T ss_dssp HHHHHHHHHHTCCEEEEE-ECCSS-SSSSEEE-EEEEESCH
T ss_pred HHHHHHhhccCCceEEEE-EEeCC-CCCccEE-EEEEECCH
Confidence 3455666 9999999874 44444 4789999 99998554
No 340
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=64.88 E-value=0.35 Score=35.41 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=26.1
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|..++.|..+ ..++.++|| +||.|.+.
T Consensus 31 ~~l~~~F~~~g~v~~~------~~~~~~~g~-afV~f~~~ 63 (96)
T 1fjc_A 31 DELKEVFEDALEIRLV------SQDGKSKGI-AYIEFKSE 63 (96)
T ss_dssp HHHHHHHCSEEEECCE------EETTEEEEE-EEEEESSH
T ss_pred HHHHHHHhhCCcEEEe------CCCCCcceE-EEEEECCH
Confidence 4689999999887655 457889999 99998553
No 341
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.84 E-value=0.33 Score=35.51 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=25.4
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEF 47 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~~ 47 (363)
.+|..+|.++++|..+ ..++.+++ | +||.|.+..
T Consensus 23 ~~l~~~F~~~G~v~~v---~~~~~~g~---~-afV~f~~~~ 56 (94)
T 2e5g_A 23 AQLSEYFLAFGPVASV---VMDKDKGV---F-AIVEMGDVG 56 (94)
T ss_dssp HHHHHHGGGTSCEEEE---EECSSSCC---E-EEEEESSHH
T ss_pred HHHHHHHHhcCCeEEE---EEcCCCCc---E-EEEEECCHH
Confidence 4689999999999876 34455555 7 899997744
No 342
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=63.30 E-value=0.15 Score=39.25 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=24.0
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
..+|..+|.++++|..+. |..+ || +||.|.+.
T Consensus 30 ~~~l~~~F~~~G~v~~~~-i~~~-------g~-afV~f~~~ 61 (115)
T 3beg_B 30 WQDLKDHMREAGDVCYAD-VYRD-------GT-GVVEFVRK 61 (115)
T ss_dssp TTHHHHHHGGGSCEEEEE-ECTT-------SE-EEEEESSH
T ss_pred HHHHHHHHHhcCCeEEEE-EecC-------CE-EEEEECCH
Confidence 467999999999988874 3322 88 89998554
No 343
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=62.73 E-value=0.36 Score=38.36 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=28.2
Q ss_pred hhhhhcCCCCCCCCCCC---CC-CCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLP---PV-EKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~---p~-~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++|+|..+. ++ ...+.+++++|| +||.|.+.
T Consensus 60 ~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~-afV~f~~~ 102 (143)
T 3egn_A 60 KDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQ-AFIGLPNE 102 (143)
T ss_dssp HHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEE-EEEECSSH
T ss_pred HHHHHHHHHhCCcccccccceeeEEeccCCCcccE-EEEEeCCH
Confidence 46899999999998751 11 122457899999 99998554
No 344
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=61.93 E-value=1.4 Score=33.93 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=25.5
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
..+|..+|.++|+|..+. + ..++|| +||.|.+.
T Consensus 51 e~~L~~~F~~~G~I~~v~-i------~~~kg~-aFV~f~~~ 83 (121)
T 2bz2_A 51 PTLLRGAFSPFGNIIDLS-M------DPPRNC-AFVTYEKM 83 (121)
T ss_dssp HHHHHHHHSTTCCCSCEE-E------ETTTTE-EEEECSSH
T ss_pred HHHHHHHHHccCCEEEEE-E------eCCCCE-EEEEECCH
Confidence 457999999999998773 2 267899 89988543
No 345
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.11 E-value=1.1 Score=33.41 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=23.6
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++|.|..+. ++. .+|| +||.|.+.
T Consensus 30 ~~L~~~F~~fG~v~~v~-i~~------~kg~-aFVef~~~ 61 (101)
T 2cq1_A 30 TEVIALGLPFGKVTNIL-MLK------GKNQ-AFLELATE 61 (101)
T ss_dssp HHHHHTTTTTSCEEEEE-EET------TTTE-EEEEESSH
T ss_pred HHHHHHHHhcCCEEEEE-EEC------CCCE-EEEEECCH
Confidence 56999999999998762 222 2799 88888443
No 346
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=61.03 E-value=0.63 Score=39.27 Aligned_cols=37 Identities=11% Similarity=0.119 Sum_probs=28.4
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|+++|+|..+. +..+. ++.++|| +||.|.+.
T Consensus 124 ~~L~~~F~~~G~v~~v~-i~~~~-~~~~kG~-aFVeF~~~ 160 (193)
T 2voo_A 124 DDIKEWLEDKGQVLNIQ-MRRTL-HKAFKGS-IFVVFDSI 160 (193)
T ss_dssp HHHHHHHTTSCCEEEEE-EEECT-TCCEEEE-EEEEESSH
T ss_pred HHHHHHHhcCCCEEEEE-EEECC-CCCcccE-EEEEECCH
Confidence 46899999999998763 44343 5889999 99998554
No 347
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.87 E-value=0.97 Score=35.02 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=23.4
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLN 45 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~ 45 (363)
.+|..+|+++|.|..+. ++. .+|| +||.|.+
T Consensus 46 ~dL~~lF~~fG~V~~v~-i~~------~kG~-AFVeF~~ 76 (119)
T 2ad9_A 46 GEVISLGLPFGKVTNLL-MLK------GKNQ-AFIEMNT 76 (119)
T ss_dssp HHHHHHHTTTSCCCEEE-EEG------GGTE-EEEECSC
T ss_pred HHHHHHHHhcCCEEEEE-EeC------CCCE-EEEEECC
Confidence 46999999999998773 322 2789 8888844
No 348
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=59.27 E-value=1.1 Score=34.21 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=25.3
Q ss_pred hhhhhcCCCCC-CCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRD-PVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~-pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++| .|..+..+ ++.++|| |||.|.+.
T Consensus 43 ~dL~~~F~~~G~~v~~v~i~-----~~~~rGf-aFV~F~~~ 77 (111)
T 2jvr_A 43 QDLKDLARENSLETTFSSVN-----TRDFDGT-GALEFPSE 77 (111)
T ss_dssp HHHHHHHHHHTCCCSEEECS-----SCSSSCC-EEEEESSH
T ss_pred HHHHHHHHHhCCeeEEEEEE-----cCCCCCE-EEEEECCH
Confidence 46899999999 67766322 2468999 99999554
No 349
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.24 E-value=0.66 Score=34.03 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=23.6
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 11 ALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 11 ~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|.++++|..+. +..++.+ +|| +||.|.+.
T Consensus 32 ~~F~~~G~v~~v~-i~~~~~~---rg~-afV~f~~~ 62 (96)
T 2dgx_A 32 EAFARHGKVKSVE-LSPHTDY---QLK-AVVQMENL 62 (96)
T ss_dssp HHHHHHSCEEEEE-ECSCCST---TCC-EEEEESSH
T ss_pred HhccccCcEEEEE-EEeCCCC---CeE-EEEEECCH
Confidence 9999999998873 5555554 889 89988543
No 350
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.58 E-value=1.7 Score=32.88 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=25.9
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|..+|.++|+|..+ .| .+ +.++|| +||.|.+.
T Consensus 41 ~~l~~~f~~~G~v~~v-~i-~~---~~~~G~-afV~f~~~ 74 (112)
T 2dit_A 41 EDLRVECSKFGQIRKL-LL-FD---RHPDGV-ASVSFRDP 74 (112)
T ss_dssp HHHHHHGGGTSCCSEE-EE-ET---TCTTCE-EEEECSCH
T ss_pred HHHHHHHHccCCEeEE-EE-ec---CCCCEE-EEEEECCH
Confidence 4788999999999987 33 23 248999 89998554
No 351
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=45.86 E-value=40 Score=27.59 Aligned_cols=56 Identities=21% Similarity=0.321 Sum_probs=37.7
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--HhhCCccEEEEeccCCCCCcceEEEEEecC-HHHHHHHHH
Q psy16184 103 TLFIARVNY-D--------TSESKLRREF--EVYGPIKKIVMVHNKVTGKPRGYAFIEYEH-ERDMHSAYK 161 (363)
Q Consensus 103 ~l~V~nL~~-~--------~t~~~L~~~F--~~~G~i~~v~i~~d~~t~~~~g~afV~f~~-~~~a~~Ai~ 161 (363)
+++|-|++. . .....|.+.| ..|..+.-..+ .++ ..+.|+|.|.|.. ......|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l-~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL-WNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE-ECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec-ccC--CCCceeEEEEecCChHHHHHHHH
Confidence 677888886 2 3457899977 88988764444 432 3367899999974 444555555
No 352
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=45.52 E-value=4.7 Score=30.72 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=25.0
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 7 PNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 7 ~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
.+|...|+.+|+|..+. |+.+ .++|| +||.|.+.
T Consensus 32 edl~~~f~kfG~V~~v~-i~~~----~~~G~-~fV~f~~~ 65 (114)
T 3s6e_A 32 DDVIEECNKHGGVIHIY-VDKN----SAQGN-VYVKCPSI 65 (114)
T ss_dssp HHHHHHHTTTTCCSEEE-ECTT----CTTCC-EEEECSSH
T ss_pred HHHHHHHhccCCEEEEE-EecC----CCcEE-EEEEECCH
Confidence 46889999999998773 4332 25899 89998543
No 353
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=32.83 E-value=1e+02 Score=22.04 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=25.7
Q ss_pred ccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q psy16184 128 IKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGK 166 (363)
Q Consensus 128 i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~ 166 (363)
|..+.++. ...||.||++...+++..+|..+.|.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 55555543 26799999999998888888877664
No 354
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=30.02 E-value=1.2e+02 Score=19.86 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=41.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHH
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~ 162 (363)
.++.|.|+.-..-...|...+.. ..|..+.+-.. .+-+.|+|.+.+....+|..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 47889999877778889999998 77888877432 46778888866677777775
No 355
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=28.18 E-value=43 Score=29.46 Aligned_cols=31 Identities=19% Similarity=0.469 Sum_probs=24.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEE
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVM 133 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i 133 (363)
..+.|+|||+.++...|..++.. ..+..+.+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 46889999999999999999987 55554444
No 356
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.76 E-value=5.9 Score=31.78 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=15.7
Q ss_pred HHHHHHHHhhCCccEEEEeccCCCCCcceEEEEEec
Q psy16184 116 SKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYE 151 (363)
Q Consensus 116 ~~L~~~F~~~G~i~~v~i~~d~~t~~~~g~afV~f~ 151 (363)
+++.++|...|.|+.+.. .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 345556666676654322 3689999875
No 357
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=26.12 E-value=1.3e+02 Score=22.31 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=27.9
Q ss_pred CccEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q psy16184 127 PIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKK 167 (363)
Q Consensus 127 ~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~Ai~~l~g~~ 167 (363)
.|..+..+. ..+||-||+=....++..||..+.+..
T Consensus 40 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPE-----HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECT-----TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecC-----CCceEEEEEeCCHHHHHHHHhccccee
Confidence 466666643 268999999999999999998776543
No 358
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=23.22 E-value=42 Score=30.86 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=19.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh
Q psy16184 103 TLFIARVNYDTSESKLRREFEV 124 (363)
Q Consensus 103 ~l~V~nL~~~~t~~~L~~~F~~ 124 (363)
.++|+|||++++..-|..+|..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988888874
No 359
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=23.12 E-value=21 Score=31.71 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=25.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEEe
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMV 134 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i~ 134 (363)
..+.|+|||+.++...|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 467899999999999999999765455554444
No 360
>3gf6_A Uncharacterized bacterial lipoprotein; all-beta fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.69A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.54 E-value=5.2 Score=32.06 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=18.8
Q ss_pred CCCCCChhhhhcCCCCCCCCCCC
Q psy16184 1 MTQFLPPNLLALFAPRDPVPYLP 23 (363)
Q Consensus 1 ~~~~~p~~l~~~f~~~~pi~~~~ 23 (363)
|++++..+|..+|+|+||..+-.
T Consensus 130 midyiyaqlaglfqpyppasfpe 152 (224)
T 3gf6_A 130 MIDYVYAQLASLFQPYPPANFPE 152 (224)
T ss_dssp EEEEEEEEEESSSSCSSGGGCTT
T ss_pred hHHHHHHHHHhhcCCCCCCCCCe
Confidence 66777888999999999977643
No 361
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=22.33 E-value=11 Score=34.78 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=24.3
Q ss_pred ChhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy16184 6 PPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNE 46 (363)
Q Consensus 6 p~~l~~~f~~~~pi~~~~p~~~~p~t~~s~g~~g~v~f~~~ 46 (363)
..+|..+|+++|.|..+. + ++ ++|| +||.|.+.
T Consensus 34 e~~L~~~F~~~G~V~~v~-~--~~----~kgf-aFV~f~~~ 66 (345)
T 3tht_A 34 RNQLLPVLEKCGLVDALL-M--PP----NKPY-SFARYRTT 66 (345)
T ss_dssp HHHHHHHHHTTSCEEEEE-C--CT----TCSE-EEEEESSH
T ss_pred HHHHHHHHHhcCCeEEEE-E--eC----CCCE-EEEEECCH
Confidence 356899999999987652 2 11 5799 99999664
No 362
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=20.60 E-value=58 Score=28.11 Aligned_cols=32 Identities=6% Similarity=0.084 Sum_probs=24.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhCCccEEEE
Q psy16184 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVM 133 (363)
Q Consensus 102 ~~l~V~nL~~~~t~~~L~~~F~~~G~i~~v~i 133 (363)
..+.|+|||+.++...|..++.....+..+.+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~ 127 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVF 127 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEE
Confidence 35889999999999999998886544444443
Done!