Your job contains 1 sequence.
>psy16184
MTQFLPPNLLALFAPRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKDTPPPTRVE
TREERLERRRRERAEQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRR
EFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS
RTVKGWLPRRLGGGLGGTRRGGPDVNLKHSGREDNERERERYRLERERELAGGPPRARSG
SNDRERERERRRSRSRERKRRTSRSRSRDRRRRRSRERIRDDDIEEVEFRPKDRSDRDRD
RDRKRRRERENSEDRNERKRDRKERRKERERNNEEREEKVFIKQEPVDDYQEYDNYEDEA
SSV
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16184
(363 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0016978 - symbol:snRNP-U1-70K "small ribonucleopro... 646 2.6e-63 1
UNIPROTKB|Q1RMR2 - symbol:SNRNP70 "U1 small nuclear ribon... 588 3.6e-57 1
UNIPROTKB|E2QRU8 - symbol:SNRNP70 "Uncharacterized protei... 588 3.6e-57 1
UNIPROTKB|F6V5G7 - symbol:SNRNP70 "Uncharacterized protei... 588 3.6e-57 1
UNIPROTKB|P08621 - symbol:SNRNP70 "U1 small nuclear ribon... 588 3.6e-57 1
UNIPROTKB|I3LNE5 - symbol:SNRNP70 "Uncharacterized protei... 588 3.6e-57 1
MGI|MGI:98341 - symbol:Snrnp70 "small nuclear ribonucleop... 588 3.6e-57 1
UNIPROTKB|Q66II8 - symbol:snrnp70 "U1 small nuclear ribon... 582 1.6e-56 1
ZFIN|ZDB-GENE-040825-2 - symbol:snrnp70 "small nuclear ri... 567 6.1e-55 1
UNIPROTKB|P09406 - symbol:snrnp70 "U1 small nuclear ribon... 565 9.9e-55 1
RGD|1307120 - symbol:Snrnp70 "small nuclear ribonucleopro... 444 6.6e-42 1
UNIPROTKB|J9NZ89 - symbol:SNRNP70 "Uncharacterized protei... 443 8.4e-42 1
WB|WBGene00004390 - symbol:rnp-7 species:6239 "Caenorhabd... 433 9.6e-41 1
TAIR|locus:2101714 - symbol:U1-70K "AT3G50670" species:37... 374 4.6e-40 2
POMBASE|SPAC19A8.13 - symbol:usp101 "U1 snRNP-associated ... 335 2.3e-30 1
GENEDB_PFALCIPARUM|MAL13P1.338 - symbol:MAL13P1.338 "u1 s... 313 5.0e-28 1
UNIPROTKB|Q8ID37 - symbol:MAL13P1.338 "U1 small nuclear r... 313 5.0e-28 1
ASPGD|ASPL0000006999 - symbol:AN6903 species:162425 "Emer... 311 8.2e-28 1
DICTYBASE|DDB_G0268004 - symbol:snrp70 "U1 small nuclear ... 302 1.1e-26 1
UNIPROTKB|F1P6U2 - symbol:SNRNP35 "Uncharacterized protei... 225 1.1e-18 1
UNIPROTKB|I3LN96 - symbol:SNRNP35 "Uncharacterized protei... 224 1.4e-18 1
UNIPROTKB|Q1LZH0 - symbol:SNRNP35 "U11/U12 small nuclear ... 223 1.7e-18 1
MGI|MGI:1923417 - symbol:Snrnp35 "small nuclear ribonucle... 218 5.8e-18 1
RGD|1310724 - symbol:Snrnp35 "small nuclear ribonucleopro... 216 9.5e-18 1
UNIPROTKB|Q5U1W5 - symbol:Snrnp35 "U11/U12 small nuclear ... 216 9.5e-18 1
UNIPROTKB|Q16560 - symbol:SNRNP35 "U11/U12 small nuclear ... 213 2.0e-17 1
TAIR|locus:2058141 - symbol:AT2G43370 species:3702 "Arabi... 210 5.9e-17 1
UNIPROTKB|F1NJ85 - symbol:SNRNP35 "Uncharacterized protei... 208 6.7e-17 1
SGD|S000001323 - symbol:SNP1 "Component of U1 snRNP requi... 194 2.3e-15 1
ZFIN|ZDB-GENE-050706-77 - symbol:snrnp35 "small nuclear r... 186 1.4e-14 1
UNIPROTKB|E1C875 - symbol:TRA2A "Uncharacterized protein"... 154 3.5e-11 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 153 4.5e-11 1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi... 153 4.5e-11 1
UNIPROTKB|F1NPM7 - symbol:TRA2A "Uncharacterized protein"... 154 7.2e-11 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 151 7.4e-11 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 150 9.4e-11 1
UNIPROTKB|B4DQI6 - symbol:TRA2A "cDNA FLJ50614, highly si... 147 2.0e-10 1
UNIPROTKB|B4DUA9 - symbol:TRA2A "Transformer-2 protein ho... 147 2.0e-10 1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 146 2.5e-10 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 146 2.5e-10 1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 146 2.5e-10 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 146 2.5e-10 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 146 2.5e-10 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 146 2.5e-10 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 146 2.5e-10 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 146 2.5e-10 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 146 2.5e-10 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 146 2.5e-10 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 146 2.5e-10 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 146 2.5e-10 1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin... 145 3.2e-10 1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 145 3.2e-10 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 145 3.2e-10 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 145 3.2e-10 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 145 3.2e-10 1
UNIPROTKB|E2R4B2 - symbol:TRA2A "Uncharacterized protein"... 147 4.6e-10 1
UNIPROTKB|Q06AA6 - symbol:TRA2A "Uncharacterized protein"... 147 4.6e-10 1
UNIPROTKB|Q2KJ71 - symbol:TRA2A "Transformer 2 alpha homo... 147 4.7e-10 1
MGI|MGI:1933972 - symbol:Tra2a "transformer 2 alpha homol... 147 4.7e-10 1
TAIR|locus:2088756 - symbol:AT3G20930 species:3702 "Arabi... 150 4.8e-10 1
UNIPROTKB|Q13595 - symbol:TRA2A "Transformer-2 protein ho... 147 4.8e-10 1
RGD|1562563 - symbol:Tra2a "transformer 2 alpha homolog (... 147 4.8e-10 1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi... 146 4.9e-10 1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi... 146 7.4e-10 1
ZFIN|ZDB-GENE-040426-1391 - symbol:tra2a "transformer-2 a... 146 7.4e-10 1
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein... 141 8.4e-10 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 141 8.4e-10 1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 141 8.4e-10 1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 141 8.4e-10 1
UNIPROTKB|I3LBN9 - symbol:TRA2B "Uncharacterized protein"... 144 1.0e-09 1
WB|WBGene00000774 - symbol:cpf-2 species:6239 "Caenorhabd... 146 1.0e-09 1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 140 1.1e-09 1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 140 1.1e-09 1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 140 1.1e-09 1
UNIPROTKB|Q9BRL6 - symbol:SRSF8 "Serine/arginine-rich spl... 143 1.4e-09 1
TAIR|locus:2144945 - symbol:SCL28 "SC35-like splicing fac... 140 1.5e-09 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 146 1.5e-09 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 146 1.5e-09 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 138 1.8e-09 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 137 2.2e-09 1
UNIPROTKB|Q3ZBU5 - symbol:FUSIP1 "Uncharacterized protein... 137 2.2e-09 1
UNIPROTKB|Q5JRI1 - symbol:SRSF10 "Serine/arginine-rich-sp... 137 2.2e-09 1
UNIPROTKB|Q5JRI3 - symbol:SRSF10 "Serine/arginine-rich-sp... 137 2.2e-09 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 137 2.2e-09 1
RGD|1311067 - symbol:Srsf10 "serine/arginine-rich splicin... 137 2.2e-09 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 137 2.2e-09 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 137 2.2e-09 1
FB|FBgn0027841 - symbol:CstF-64 "Cleavage stimulation fac... 145 2.3e-09 1
UNIPROTKB|E9PID8 - symbol:CSTF2 "Cleavage stimulation fac... 145 2.3e-09 1
UNIPROTKB|Q9DDU8 - symbol:TRA2B "Uncharacterized protein"... 141 2.5e-09 1
UNIPROTKB|Q5ZLS0 - symbol:CSTF2 "Uncharacterized protein"... 145 2.7e-09 1
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 141 2.7e-09 1
UNIPROTKB|J9NX69 - symbol:CSTF2 "Uncharacterized protein"... 145 3.0e-09 1
UNIPROTKB|F1S1L9 - symbol:LOC100515986 "Uncharacterized p... 145 3.4e-09 1
UNIPROTKB|K7GQE7 - symbol:LOC100515986 "Uncharacterized p... 145 3.4e-09 1
UNIPROTKB|Q8HXM1 - symbol:CSTF2 "Cleavage stimulation fac... 145 3.6e-09 1
UNIPROTKB|K7GS58 - symbol:LOC100515986 "Uncharacterized p... 145 3.6e-09 1
UNIPROTKB|E2RP40 - symbol:CSTF2 "Uncharacterized protein"... 145 3.6e-09 1
UNIPROTKB|P33240 - symbol:CSTF2 "Cleavage stimulation fac... 145 3.6e-09 1
UNIPROTKB|Q5RDA3 - symbol:CSTF2 "Cleavage stimulation fac... 145 3.6e-09 1
WARNING: Descriptions of 536 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0016978 [details] [associations]
symbol:snRNP-U1-70K "small ribonucleoprotein particle U1
subunit 70K" species:7227 "Drosophila melanogaster" [GO:0005692
"U11 snRNP" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0030619 "U1 snRNA
binding" evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] [GO:0005515
"protein binding" evidence=IPI] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007052 EMBL:AE014134 GO:GO:0022008
GO:GO:0000166 GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0000381 GO:GO:0005685 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:M31162 EMBL:AY061501 EMBL:AY089622 PIR:A36311
RefSeq:NP_477205.1 UniGene:Dm.4728 PDB:2BN5 PDBsum:2BN5
ProteinModelPortal:P17133 SMR:P17133 DIP:DIP-19840N
MINT:MINT-1583111 STRING:P17133 PaxDb:P17133 PRIDE:P17133
EnsemblMetazoa:FBtr0079355 EnsemblMetazoa:FBtr0331374
EnsemblMetazoa:FBtr0331375 GeneID:33982 KEGG:dme:Dmel_CG8749
CTD:33982 FlyBase:FBgn0016978 InParanoid:P17133 OrthoDB:EOG466T39
PhylomeDB:P17133 EvolutionaryTrace:P17133 GenomeRNAi:33982
NextBio:786261 Bgee:P17133 GermOnline:CG8749 Uniprot:P17133
Length = 448
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 123/211 (58%), Positives = 145/211 (68%)
Query: 1 MTQXXXXXXXXXXXXRDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKDXXXXXXXX 60
MTQ R+P+P++PPV+KLPHEKK+ GY G+A F+ +FEDPKD
Sbjct: 1 MTQYLPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKDTPLPKTVE 60
Query: 61 XXXXXXXXXXXXXXXQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRR 120
QVAYKLE+EIALWDP NAT DPF+TLFIAR+NYDTSESKLRR
Sbjct: 61 TRQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRR 120
Query: 121 EFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180
EFE YGPIKKIV++H++ +GKP+GYAFIEYEHERDMH+AYKHADGKKID +RVLVDVER+
Sbjct: 121 EFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERA 180
Query: 181 RTVKXXXXXXXXXXXXXXXXXXPDVNLKHSG 211
RTVK DVN+KHSG
Sbjct: 181 RTVKGWLPRRLGGGLGGTRRGGNDVNIKHSG 211
>UNIPROTKB|Q1RMR2 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 EMBL:BC114762 IPI:IPI00711491
RefSeq:NP_001069514.1 UniGene:Bt.12748 ProteinModelPortal:Q1RMR2
STRING:Q1RMR2 PRIDE:Q1RMR2 Ensembl:ENSBTAT00000002587 GeneID:535113
KEGG:bta:535113 CTD:6625 GeneTree:ENSGT00530000063750
InParanoid:Q1RMR2 OrthoDB:EOG4CJVJ7 NextBio:20876626
ArrayExpress:Q1RMR2 Uniprot:Q1RMR2
Length = 439
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 118/212 (55%), Positives = 138/212 (65%)
Query: 1 MTQXXXXXXXXXXXXRDPVPYLPPVEKLPHEKK-THGYSGIAAFLNEFEDPKDXXXXXXX 59
MTQ RDP+PYLPP+EKLPHEK Y GIA ++ EFEDP+D
Sbjct: 1 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA 60
Query: 60 XXXXXXXXXXXXXXXXQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
+ ++E E+ +WDP++ PNA D FKTLF+ARVNYDT+ESKLR
Sbjct: 61 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR 120
Query: 120 REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179
REFEVYGPIK+I MV++K +GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
Sbjct: 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180
Query: 180 SRTVKXXXXXXXXXXXXXXXXXXPDVNLKHSG 211
RTVK DVN++HSG
Sbjct: 181 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSG 212
>UNIPROTKB|E2QRU8 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR022023 Pfam:PF12220 Ensembl:ENSCAFT00000005969
Uniprot:E2QRU8
Length = 386
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 118/212 (55%), Positives = 138/212 (65%)
Query: 1 MTQXXXXXXXXXXXXRDPVPYLPPVEKLPHEKK-THGYSGIAAFLNEFEDPKDXXXXXXX 59
MTQ RDP+PYLPP+EKLPHEK Y GIA ++ EFEDP+D
Sbjct: 1 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA 60
Query: 60 XXXXXXXXXXXXXXXXQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
+ ++E E+ +WDP++ PNA D FKTLF+ARVNYDT+ESKLR
Sbjct: 61 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR 120
Query: 120 REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179
REFEVYGPIK+I MV++K +GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
Sbjct: 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180
Query: 180 SRTVKXXXXXXXXXXXXXXXXXXPDVNLKHSG 211
RTVK DVN++HSG
Sbjct: 181 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSG 212
>UNIPROTKB|F6V5G7 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 Ensembl:ENSCAFT00000005969
EMBL:AAEX03000805 RefSeq:XP_541503.2 ProteinModelPortal:F6V5G7
GeneID:484388 KEGG:cfa:484388 Uniprot:F6V5G7
Length = 439
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 118/212 (55%), Positives = 138/212 (65%)
Query: 1 MTQXXXXXXXXXXXXRDPVPYLPPVEKLPHEKK-THGYSGIAAFLNEFEDPKDXXXXXXX 59
MTQ RDP+PYLPP+EKLPHEK Y GIA ++ EFEDP+D
Sbjct: 1 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA 60
Query: 60 XXXXXXXXXXXXXXXXQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
+ ++E E+ +WDP++ PNA D FKTLF+ARVNYDT+ESKLR
Sbjct: 61 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR 120
Query: 120 REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179
REFEVYGPIK+I MV++K +GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
Sbjct: 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180
Query: 180 SRTVKXXXXXXXXXXXXXXXXXXPDVNLKHSG 211
RTVK DVN++HSG
Sbjct: 181 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSG 212
>UNIPROTKB|P08621 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH471177
GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724 PDB:3CW1 PDB:3PGW
PDBsum:3CW1 PDBsum:3PGW KO:K11093 OMA:KKSRGYL InterPro:IPR022023
Pfam:PF12220 CTD:6625 OrthoDB:EOG4CJVJ7 EMBL:X04654 EMBL:X06814
EMBL:X06815 EMBL:X06817 EMBL:X07402 EMBL:X06816 EMBL:X06812
EMBL:X06811 EMBL:X07401 EMBL:X07403 EMBL:M22636 EMBL:M57939
EMBL:M57929 EMBL:M57930 EMBL:M57932 EMBL:M57934 EMBL:M57937
EMBL:M57935 EMBL:AK096783 EMBL:X84841 EMBL:AL117507 EMBL:BC001315
IPI:IPI00219483 IPI:IPI00219484 IPI:IPI00219485 IPI:IPI00290204
PIR:A25707 PIR:S00674 RefSeq:NP_003080.2 UniGene:Hs.467097 PDB:2L5I
PDB:2L5J PDBsum:2L5I PDBsum:2L5J ProteinModelPortal:P08621
SMR:P08621 DIP:DIP-29406N IntAct:P08621 MINT:MINT-5004037
STRING:P08621 PhosphoSite:P08621 DMDM:13635663 PaxDb:P08621
PRIDE:P08621 Ensembl:ENST00000221448 Ensembl:ENST00000401730
Ensembl:ENST00000544278 GeneID:6625 KEGG:hsa:6625 UCSC:uc002pmk.3
GeneCards:GC19P049588 HGNC:HGNC:11150 HPA:CAB001718 MIM:180740
neXtProt:NX_P08621 PharmGKB:PA35992 InParanoid:P08621
ChiTaRS:SNRNP70 EvolutionaryTrace:P08621 GenomeRNAi:6625
NextBio:25805 PMAP-CutDB:P08621 ArrayExpress:P08621 Bgee:P08621
Genevestigator:P08621 GermOnline:ENSG00000104852 Uniprot:P08621
Length = 437
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 118/212 (55%), Positives = 138/212 (65%)
Query: 1 MTQXXXXXXXXXXXXRDPVPYLPPVEKLPHEKK-THGYSGIAAFLNEFEDPKDXXXXXXX 59
MTQ RDP+PYLPP+EKLPHEK Y GIA ++ EFEDP+D
Sbjct: 1 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA 60
Query: 60 XXXXXXXXXXXXXXXXQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
+ ++E E+ +WDP++ PNA D FKTLF+ARVNYDT+ESKLR
Sbjct: 61 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR 120
Query: 120 REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179
REFEVYGPIK+I MV++K +GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
Sbjct: 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180
Query: 180 SRTVKXXXXXXXXXXXXXXXXXXPDVNLKHSG 211
RTVK DVN++HSG
Sbjct: 181 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSG 212
>UNIPROTKB|I3LNE5 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:FP102974 Ensembl:ENSSSCT00000022304 Uniprot:I3LNE5
Length = 452
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 118/212 (55%), Positives = 138/212 (65%)
Query: 1 MTQXXXXXXXXXXXXRDPVPYLPPVEKLPHEKK-THGYSGIAAFLNEFEDPKDXXXXXXX 59
MTQ RDP+PYLPP+EKLPHEK Y GIA ++ EFEDP+D
Sbjct: 1 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA 60
Query: 60 XXXXXXXXXXXXXXXXQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
+ ++E E+ +WDP++ PNA D FKTLF+ARVNYDT+ESKLR
Sbjct: 61 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR 120
Query: 120 REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179
REFEVYGPIK+I MV++K +GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
Sbjct: 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180
Query: 180 SRTVKXXXXXXXXXXXXXXXXXXPDVNLKHSG 211
RTVK DVN++HSG
Sbjct: 181 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSG 212
>MGI|MGI:98341 [details] [associations]
symbol:Snrnp70 "small nuclear ribonucleoprotein 70 (U1)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98341 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 OrthoDB:EOG4CJVJ7 ChiTaRS:SNRNP70
EMBL:AK133115 EMBL:AK146729 EMBL:X15769 EMBL:X15770 EMBL:X15771
EMBL:X15772 EMBL:X15774 EMBL:X15775 EMBL:X15776 IPI:IPI00230541
IPI:IPI00625105 PIR:S04336 PIR:S04824 RefSeq:NP_033250.3
UniGene:Mm.216386 ProteinModelPortal:Q62376 SMR:Q62376
MINT:MINT-1868298 STRING:Q62376 PhosphoSite:Q62376 PaxDb:Q62376
PRIDE:Q62376 Ensembl:ENSMUST00000074575 GeneID:20637 KEGG:mmu:20637
HOVERGEN:HBG094947 InParanoid:Q62376 NextBio:299035 Bgee:Q62376
Genevestigator:Q62376 GermOnline:ENSMUSG00000063511 Uniprot:Q62376
Length = 448
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 118/212 (55%), Positives = 138/212 (65%)
Query: 1 MTQXXXXXXXXXXXXRDPVPYLPPVEKLPHEKK-THGYSGIAAFLNEFEDPKDXXXXXXX 59
MTQ RDP+PYLPP+EKLPHEK Y GIA ++ EFEDP+D
Sbjct: 1 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA 60
Query: 60 XXXXXXXXXXXXXXXXQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
+ ++E E+ +WDP++ PNA D FKTLF+ARVNYDT+ESKLR
Sbjct: 61 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR 120
Query: 120 REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179
REFEVYGPIK+I MV++K +GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
Sbjct: 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180
Query: 180 SRTVKXXXXXXXXXXXXXXXXXXPDVNLKHSG 211
RTVK DVN++HSG
Sbjct: 181 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSG 212
>UNIPROTKB|Q66II8 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0060218 GO:GO:0043484
GO:GO:0000398 eggNOG:COG0724 KO:K11093 InterPro:IPR022023
Pfam:PF12220 CTD:6625 GeneTree:ENSGT00530000063750
OrthoDB:EOG4CJVJ7 HOVERGEN:HBG012300 EMBL:CR760195 EMBL:BC081331
RefSeq:NP_001008126.1 UniGene:Str.26779 ProteinModelPortal:Q66II8
STRING:Q66II8 Ensembl:ENSXETT00000049555 GeneID:493488
KEGG:xtr:493488 Xenbase:XB-GENE-992818 InParanoid:Q66II8
OMA:RHDKYDR Bgee:Q66II8 Uniprot:Q66II8
Length = 471
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 118/212 (55%), Positives = 136/212 (64%)
Query: 1 MTQXXXXXXXXXXXXRDPVPYLPPVEKLPHEKK-THGYSGIAAFLNEFEDPKDXXXXXXX 59
MTQ RDPVPYLPP++KLPHEK Y GIA ++ EFEDP+D
Sbjct: 1 MTQFLPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA 60
Query: 60 XXXXXXXXXXXXXXXXQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
+ +E E+ +WDP++ NA D FKTLF+ARVNYDT+ESKLR
Sbjct: 61 ETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLR 120
Query: 120 REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179
REFEVYGPIK+I MV+NK +GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
Sbjct: 121 REFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180
Query: 180 SRTVKXXXXXXXXXXXXXXXXXXPDVNLKHSG 211
RTVK DVN++HSG
Sbjct: 181 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSG 212
>ZFIN|ZDB-GENE-040825-2 [details] [associations]
symbol:snrnp70 "small nuclear ribonucleoprotein 70
(U1)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040825-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0060218 GO:GO:0030529
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 EMBL:BX324157 EMBL:AY648811
IPI:IPI00817875 RefSeq:NP_001003875.1 UniGene:Dr.35845
STRING:Q6DRE8 Ensembl:ENSDART00000055279 GeneID:445398
KEGG:dre:445398 InParanoid:Q6DRE8 NextBio:20832103 Uniprot:Q6DRE8
Length = 495
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 116/212 (54%), Positives = 133/212 (62%)
Query: 1 MTQXXXXXXXXXXXXRDPVPYLPPVEKLPHEKK-THGYSGIAAFLNEFEDPKDXXXXXXX 59
MTQ RDP+P+LP + KLPHEK Y GIA F+ FEDP+D
Sbjct: 1 MTQFLPPNLLALFAPRDPIPFLPQLGKLPHEKHHNQPYCGIAPFIRHFEDPRDAPPPTRA 60
Query: 60 XXXXXXXXXXXXXXXXQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
+ +E E+ LWDP++ NA D FKTLF+AR+NYDT+ESKLR
Sbjct: 61 ETREERLERKRREKMERRQVVVEGELKLWDPHNDANAQGDAFKTLFVARINYDTTESKLR 120
Query: 120 REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 179
REFEVYGPIK+I +V+NK TGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
Sbjct: 121 REFEVYGPIKRIYIVYNKKTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180
Query: 180 SRTVKXXXXXXXXXXXXXXXXXXPDVNLKHSG 211
RTVK DVN+KHSG
Sbjct: 181 GRTVKGWRPRRLGGGLGGTRRGGADVNIKHSG 212
>UNIPROTKB|P09406 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8355 "Xenopus laevis" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 InterPro:IPR022023
Pfam:PF12220 EMBL:X12430 PIR:S02016 UniGene:Xl.5366
ProteinModelPortal:P09406 Xenbase:XB-GENE-992825 HOVERGEN:HBG012300
Uniprot:P09406
Length = 471
Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
Identities = 117/215 (54%), Positives = 136/215 (63%)
Query: 1 MTQXXXXXXXXXXXXRDPVPYLPPVEKLPHEKK-THGYSGIAAFLNEFEDPKDXXXXXXX 59
MTQ RDPVPYLPP++KLPHEK Y GIA ++ EFEDP+D
Sbjct: 1 MTQFLPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA 60
Query: 60 XXXXXXXXXXXXXXXXQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
+ +E E+ +WDP++ NA D FKTLF+ARVNYDT+ESKLR
Sbjct: 61 ETREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLR 120
Query: 120 REFEVYGPIKKIVMVHNKVT---GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
REFEVYGPIK+I +V+NK + GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD
Sbjct: 121 REFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 180
Query: 177 VERSRTVKXXXXXXXXXXXXXXXXXXPDVNLKHSG 211
VER RTVK DVN++HSG
Sbjct: 181 VERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSG 215
>RGD|1307120 [details] [associations]
symbol:Snrnp70 "small nuclear ribonucleoprotein 70 (U1)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0043484 "regulation of RNA splicing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1307120 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR022023 Pfam:PF12220 IPI:IPI00564444
ProteinModelPortal:D4ADS7 Ensembl:ENSRNOT00000051455
UCSC:RGD:1307120 ArrayExpress:D4ADS7 Uniprot:D4ADS7
Length = 187
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 87/161 (54%), Positives = 105/161 (65%)
Query: 1 MTQXXXXXXXXXXXXRDPVPYLPPVEKLPHEKK-THGYSGIAAFLNEFEDPKDXXXXXXX 59
MTQ RDP+PYLPP+EKLPHEK Y GIA ++ EFEDP+D
Sbjct: 1 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA 60
Query: 60 XXXXXXXXXXXXXXXXQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
+ ++E E+ +WDP++ PNA D FKTLF+ARVNYDT+ESKLR
Sbjct: 61 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR 120
Query: 120 REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAY 160
REFEVYGPIK+I MV++K +GKPRGYAFIEYEHERDMH Y
Sbjct: 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHCEY 161
>UNIPROTKB|J9NZ89 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:AAEX03000805 ProteinModelPortal:J9NZ89
Ensembl:ENSCAFT00000045168 Uniprot:J9NZ89
Length = 166
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 87/159 (54%), Positives = 105/159 (66%)
Query: 1 MTQXXXXXXXXXXXXRDPVPYLPPVEKLPHEKK-THGYSGIAAFLNEFEDPKDXXXXXXX 59
MTQ RDP+PYLPP+EKLPHEK Y GIA ++ EFEDP+D
Sbjct: 1 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA 60
Query: 60 XXXXXXXXXXXXXXXXQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLR 119
+ ++E E+ +WDP++ PNA D FKTLF+ARVNYDT+ESKLR
Sbjct: 61 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR 120
Query: 120 REFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHS 158
REFEVYGPIK+I MV++K +GKPRGYAFIEYEHERDMHS
Sbjct: 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHS 159
>WB|WBGene00004390 [details] [associations]
symbol:rnp-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035
GO:GO:0007281 eggNOG:COG0724 HSSP:P09651 EMBL:FO080149
HOGENOM:HOG000236289 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 PIR:G88499 RefSeq:NP_498565.2
ProteinModelPortal:Q09584 SMR:Q09584 DIP:DIP-25425N IntAct:Q09584
MINT:MINT-229501 STRING:Q09584 PaxDb:Q09584
EnsemblMetazoa:K04G7.10.1 EnsemblMetazoa:K04G7.10.2 GeneID:176002
KEGG:cel:CELE_K04G7.10 UCSC:K04G7.10 CTD:176002 WormBase:K04G7.10
InParanoid:Q09584 OMA:THLLPPN NextBio:890690 Uniprot:Q09584
Length = 332
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 86/171 (50%), Positives = 111/171 (64%)
Query: 16 RDPVPYLPPVEKLPHEK--KTHGYSGIAAFLNEFEDPKDXXXXXXXXXXXXXXXXXXXXX 73
R PV YLPP + L +K K +G+A ++ FEDPKD
Sbjct: 16 RPPVQYLPPCQDLLVDKNAKRAPMTGVAQYIQLFEDPKDTPAKIPVVTKAEAKEEKRRQK 75
Query: 74 XXQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVM 133
+AYK+EQ IA W+P P A+ DP++TLF+ R+NY+TSESKLRREFE YG IKK+ M
Sbjct: 76 DELLAYKVEQGIATWNPAENPRASEDPYRTLFVGRINYETSESKLRREFEAYGKIKKLTM 135
Query: 134 VHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVK 184
VH++ GKPRGYAFIEY + +MH+AYK ADG K+DG+R++VD ER RT K
Sbjct: 136 VHDEA-GKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVDYERGRTQK 185
>TAIR|locus:2101714 [details] [associations]
symbol:U1-70K "AT3G50670" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 EMBL:AL132979 GO:GO:0000398
eggNOG:COG0724 EMBL:M93439 EMBL:U52909 EMBL:U52910 EMBL:AY039874
EMBL:AY094003 IPI:IPI00517859 IPI:IPI00520131 PIR:S71367
RefSeq:NP_190636.1 RefSeq:NP_850676.1 UniGene:At.25571
ProteinModelPortal:Q42404 SMR:Q42404 IntAct:Q42404 STRING:Q42404
PaxDb:Q42404 PRIDE:Q42404 EnsemblPlants:AT3G50670.1 GeneID:824230
KEGG:ath:AT3G50670 GeneFarm:4534 TAIR:At3g50670
HOGENOM:HOG000236289 InParanoid:Q42404 KO:K11093 OMA:KKSRGYL
PhylomeDB:Q42404 ProtClustDB:CLSN2918318 Genevestigator:Q42404
GermOnline:AT3G50670 InterPro:IPR022023 Pfam:PF12220 Uniprot:Q42404
Length = 427
Score = 374 (136.7 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 67/104 (64%), Positives = 89/104 (85%)
Query: 80 KLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVT 139
K +++ +DPN+ PNAT DP+KTLF++R+NY++SESK++REFE YGPIK++ +V +++T
Sbjct: 116 KAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLT 175
Query: 140 GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTV 183
KP+GYAFIEY H RDM +AYK ADG+KIDGRRVLVDVER RTV
Sbjct: 176 NKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTV 219
Score = 69 (29.3 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 16 RDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKD 52
R P+ Y PP EK +K Y+G+A F++ F +P D
Sbjct: 53 RPPLEYKPPPEK----RKCPPYTGMAQFVSNFAEPGD 85
>POMBASE|SPAC19A8.13 [details] [associations]
symbol:usp101 "U1 snRNP-associated protein Usp101
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000243
"commitment complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0030619 "U1
snRNA binding" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC19A8.13
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0005685 GO:GO:0000395 KO:K11093 InterPro:IPR022023
Pfam:PF12220 PIR:T37948 RefSeq:NP_593779.1 HSSP:P62995
ProteinModelPortal:O13829 DIP:DIP-59803N STRING:O13829
EnsemblFungi:SPAC19A8.13.1 GeneID:2542461 KEGG:spo:SPAC19A8.13
HOGENOM:HOG000000970 OMA:YLPPVED OrthoDB:EOG4HMNKR NextBio:20803517
GO:GO:0030619 Uniprot:O13829
Length = 261
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 70/169 (41%), Positives = 100/169 (59%)
Query: 16 RDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKDXXXXXXXXXXXXXXXXXXXXXXX 75
R P+ YLPP++ P ++ T SGIA +L ++ D
Sbjct: 16 RPPLRYLPPMDVPPEKRSTPRVSGIAKYL-KYAQSHDQQYHPTESLEEKRLRLRDEKQKQ 74
Query: 76 QVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVH 135
Q +L I +WDP+ + DP+KT+F++R++YDT ES + REF YGPI++I +V
Sbjct: 75 Q-RERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVR 133
Query: 136 NKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVK 184
NKVTGK GYAF+ +E ERD+ AYK + G ++GRR++VDVER RTVK
Sbjct: 134 NKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDVERGRTVK 182
>GENEDB_PFALCIPARUM|MAL13P1.338 [details] [associations]
symbol:MAL13P1.338 "u1 small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 71/172 (41%), Positives = 103/172 (59%)
Query: 16 RDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKDXXXXXXXXXXXXXXXXXXXXXXX 75
R + + P++K KK YSG++ FLN FE+ +
Sbjct: 17 RPMLEFYKPIKK----KKPKEYSGLSDFLNYFEEGE----APPKIKVESFKERKEKKKKE 68
Query: 76 QVAYK---LEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIV 132
++AY L+++ +DP + T DP KTLFI R++Y+ SE KL++EFE YG IK +
Sbjct: 69 KMAYNELILKEKRKEYDPFKNEDLTSDPKKTLFIGRLSYEVSEQKLKKEFESYGKIKTVK 128
Query: 133 MVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVK 184
++++K KPRGYAFIE+EH + M+ AYK ADGKKI+ RR+LVD+ER RT+K
Sbjct: 129 IIYDKNL-KPRGYAFIEFEHTKSMNDAYKLADGKKIENRRILVDIERGRTIK 179
>UNIPROTKB|Q8ID37 [details] [associations]
symbol:MAL13P1.338 "U1 small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005685 "U1
snRNP" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 71/172 (41%), Positives = 103/172 (59%)
Query: 16 RDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKDXXXXXXXXXXXXXXXXXXXXXXX 75
R + + P++K KK YSG++ FLN FE+ +
Sbjct: 17 RPMLEFYKPIKK----KKPKEYSGLSDFLNYFEEGE----APPKIKVESFKERKEKKKKE 68
Query: 76 QVAYK---LEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIV 132
++AY L+++ +DP + T DP KTLFI R++Y+ SE KL++EFE YG IK +
Sbjct: 69 KMAYNELILKEKRKEYDPFKNEDLTSDPKKTLFIGRLSYEVSEQKLKKEFESYGKIKTVK 128
Query: 133 MVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVK 184
++++K KPRGYAFIE+EH + M+ AYK ADGKKI+ RR+LVD+ER RT+K
Sbjct: 129 IIYDKNL-KPRGYAFIEFEHTKSMNDAYKLADGKKIENRRILVDIERGRTIK 179
>ASPGD|ASPL0000006999 [details] [associations]
symbol:AN6903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005685 "U1
snRNP" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
GO:GO:0030529 EMBL:AACD01000113 eggNOG:COG0724 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OrthoDB:EOG4HMNKR
RefSeq:XP_664507.1 ProteinModelPortal:Q5AXS7 STRING:Q5AXS7
EnsemblFungi:CADANIAT00007705 GeneID:2870614 KEGG:ani:AN6903.2
HOGENOM:HOG000177264 OMA:GRGYTKA Uniprot:Q5AXS7
Length = 373
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 75/180 (41%), Positives = 103/180 (57%)
Query: 16 RDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDPKDXXXXXXXXXXXXXXXXXXXXXXX 75
R P+ ++ P+++ P + K SG+A FL E + +
Sbjct: 16 RPPLRWVTPIDRAPDDIKKSKLSGVAQFLPEVKKTAEETEYNPAETWLQRKLRQKAEKKE 75
Query: 76 QVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVH 135
Q+ L + +A +DPNS P A DPFKTLF++R++Y+ +E L REF +GPI++I +V
Sbjct: 76 QLHKHLTEGLAAYDPNSDPQARGDPFKTLFVSRLSYEATEQDLEREFGRFGPIERIRIVK 135
Query: 136 NKVT--G--KP-RGYAFIEYEHERDM----H--SAYKHADGKKIDGRRVLVDVERSRTVK 184
+ VT G KP RGYAFI YE E+DM H +AYK DG +I RRVLVDVER RTVK
Sbjct: 136 DTVTPKGAKKPHRGYAFIVYEREKDMKDLIHKLAAYKETDGIRIKDRRVLVDVERGRTVK 195
>DICTYBASE|DDB_G0268004 [details] [associations]
symbol:snrp70 "U1 small nuclear ribonucleoprotein 70
kDa protein" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0268004 GenomeReviews:CM000150_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000003 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724
HSSP:Q14103 GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
RefSeq:XP_647483.1 ProteinModelPortal:Q55FQ0 STRING:Q55FQ0
EnsemblProtists:DDB0233134 GeneID:8616290 KEGG:ddi:DDB_G0268004
OMA:YLMEPAP Uniprot:Q55FQ0
Length = 459
Score = 302 (111.4 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 69/199 (34%), Positives = 99/199 (49%)
Query: 16 RDPVPYLPPVEKLPHEKKTHGYSGIAAFLNEFEDP--KDXXXXXXXXXXXXXXXXXXXXX 73
R P P+LPP P Y+G+ +L+ F DP ++
Sbjct: 15 RHPPPFLPP----PPPSNLPPYTGLRDYLSIFTDPSNEEPFKKEHIENLEEKREKKRKLK 70
Query: 74 XXQVAYKLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVM 133
+ ++ + + WDP S T DP+KT+F++R++Y T++ KL EF +GPIK + +
Sbjct: 71 ISENDERISKSLKAWDPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFL 130
Query: 134 VHNKVTG-KPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVKXXXXXXXX 192
V + K GYAFIE+E ERDM +AYK ADG KID RR++VD+ER R +K
Sbjct: 131 VKDSNNPEKHTGYAFIEFERERDMKAAYKQADGMKIDDRRIVVDIERGRVIKNWKPRKFG 190
Query: 193 XXXXXXXXXXPDVNLKHSG 211
DVN SG
Sbjct: 191 GGLGNTRAGGVDVNQTFSG 209
>UNIPROTKB|F1P6U2 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005689 GeneTree:ENSGT00530000063750 CTD:11066 KO:K13155
OMA:QHEVFVD EMBL:AAEX03014640 RefSeq:XP_534648.2
ProteinModelPortal:F1P6U2 Ensembl:ENSCAFT00000011983 GeneID:477450
KEGG:cfa:477450 Uniprot:F1P6U2
Length = 246
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 46/100 (46%), Positives = 62/100 (62%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+A + PN T DP TLF+AR+N T E KL+ F YG I+++ +V + VTG +G
Sbjct: 36 LARYTPNK--GVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGLSKG 93
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVK 184
YAFIEY+ ER + AY+ ADG ID + VD E RT+K
Sbjct: 94 YAFIEYKEERSLIKAYRDADGLVIDQHEIFVDYELERTLK 133
>UNIPROTKB|I3LN96 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00530000063750 KO:K13155 OMA:QHEVFVD EMBL:CU468910
RefSeq:XP_003359137.1 Ensembl:ENSSSCT00000023937 GeneID:100626152
KEGG:ssc:100626152 Uniprot:I3LN96
Length = 246
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 46/100 (46%), Positives = 62/100 (62%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+A + PN T DP TLF+AR+N T E KL+ F YG I+++ +V + VTG +G
Sbjct: 36 LARYTPNK--GVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKG 93
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVK 184
YAFIEY+ ER + AY+ ADG ID + VD E RT+K
Sbjct: 94 YAFIEYKEERSLLKAYRDADGLVIDQHEIFVDYELERTLK 133
>UNIPROTKB|Q1LZH0 [details] [associations]
symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:9913 "Bos taurus" [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 GO:GO:0005689 GeneTree:ENSGT00530000063750
EMBL:BC116002 IPI:IPI00730647 RefSeq:NP_001069024.1 UniGene:Bt.5294
ProteinModelPortal:Q1LZH0 STRING:Q1LZH0 PRIDE:Q1LZH0
Ensembl:ENSBTAT00000010602 GeneID:512142 KEGG:bta:512142 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 InParanoid:Q1LZH0 KO:K13155
OMA:QHEVFVD OrthoDB:EOG4MSD0C NextBio:20870261 Uniprot:Q1LZH0
Length = 245
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 46/100 (46%), Positives = 62/100 (62%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+A + PN T DP TLF+AR+N T E KL+ F YG I+++ +V + VTG +G
Sbjct: 36 LARYTPNK--GVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKG 93
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVK 184
YAFIEY+ ER + AY+ ADG ID + VD E RT+K
Sbjct: 94 YAFIEYKDERSLLKAYRDADGLVIDQHEIFVDYELERTLK 133
>MGI|MGI:1923417 [details] [associations]
symbol:Snrnp35 "small nuclear ribonucleoprotein 35
(U11/U12)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1923417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 GO:GO:0005689 HSSP:Q14103
GeneTree:ENSGT00530000063750 CTD:11066 HOGENOM:HOG000006374
HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
ChiTaRS:SNRNP35 EMBL:AK018232 EMBL:AK039064 EMBL:BC043031
EMBL:BC058361 IPI:IPI00135531 RefSeq:NP_083808.1 UniGene:Mm.156035
ProteinModelPortal:Q9D384 SMR:Q9D384 STRING:Q9D384
PhosphoSite:Q9D384 PRIDE:Q9D384 Ensembl:ENSMUST00000031349
Ensembl:ENSMUST00000111453 GeneID:76167 KEGG:mmu:76167
UCSC:uc008zpy.1 InParanoid:Q9D384 NextBio:344705 Bgee:Q9D384
Genevestigator:Q9D384 Uniprot:Q9D384
Length = 244
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 45/100 (45%), Positives = 62/100 (62%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+A + PN T DP TLF+AR+N T E KL+ F YG I+++ +V + VTG +G
Sbjct: 36 LARYVPNK--GVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKG 93
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVK 184
YAFIEY+ ER + AY+ ADG ID + VD E RT++
Sbjct: 94 YAFIEYKEERALMKAYRDADGLVIDQHEIFVDYELERTLR 133
>RGD|1310724 [details] [associations]
symbol:Snrnp35 "small nuclear ribonucleoprotein 35 (U11/U12)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310724
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 eggNOG:COG0724 GO:GO:0005689 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OrthoDB:EOG4MSD0C
EMBL:BC086435 IPI:IPI00189830 RefSeq:NP_001014149.1
UniGene:Rn.79076 ProteinModelPortal:Q5U1W5 STRING:Q5U1W5
GeneID:360803 KEGG:rno:360803 UCSC:RGD:1310724 InParanoid:Q5U1W5
NextBio:674154 Genevestigator:Q5U1W5 Uniprot:Q5U1W5
Length = 244
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 45/100 (45%), Positives = 62/100 (62%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+A + PN T DP TLF+AR+N T E KL+ F YG I+++ +V + VTG +G
Sbjct: 36 LARYVPNK--GVTGDPLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKG 93
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVK 184
YAFIEY+ ER + AY+ ADG ID + VD E RT++
Sbjct: 94 YAFIEYKEERALLKAYRDADGLVIDQHEIFVDYELERTLR 133
>UNIPROTKB|Q5U1W5 [details] [associations]
symbol:Snrnp35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310724 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q9V535 eggNOG:COG0724
GO:GO:0005689 CTD:11066 HOGENOM:HOG000006374 HOVERGEN:HBG104583
KO:K13155 OrthoDB:EOG4MSD0C EMBL:BC086435 IPI:IPI00189830
RefSeq:NP_001014149.1 UniGene:Rn.79076 ProteinModelPortal:Q5U1W5
STRING:Q5U1W5 GeneID:360803 KEGG:rno:360803 UCSC:RGD:1310724
InParanoid:Q5U1W5 NextBio:674154 Genevestigator:Q5U1W5
Uniprot:Q5U1W5
Length = 244
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 45/100 (45%), Positives = 62/100 (62%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+A + PN T DP TLF+AR+N T E KL+ F YG I+++ +V + VTG +G
Sbjct: 36 LARYVPNK--GVTGDPLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKG 93
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVK 184
YAFIEY+ ER + AY+ ADG ID + VD E RT++
Sbjct: 94 YAFIEYKEERALLKAYRDADGLVIDQHEIFVDYELERTLR 133
>UNIPROTKB|Q16560 [details] [associations]
symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0003723 HSSP:Q9V535
eggNOG:COG0724 GO:GO:0005689 CTD:11066 HOGENOM:HOG000006374
HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
EMBL:U44798 EMBL:U44799 EMBL:AK290127 EMBL:BC009622 EMBL:BC047678
EMBL:BC054034 EMBL:BC093671 EMBL:BC111955 EMBL:BK005197
IPI:IPI00007576 IPI:IPI00377030 PIR:G02371 RefSeq:NP_073208.1
RefSeq:NP_851030.1 UniGene:Hs.632738 ProteinModelPortal:Q16560
SMR:Q16560 STRING:Q16560 PhosphoSite:Q16560 DMDM:74754517
PRIDE:Q16560 DNASU:11066 Ensembl:ENST00000350887
Ensembl:ENST00000412157 Ensembl:ENST00000526639 GeneID:11066
KEGG:hsa:11066 UCSC:uc001ufb.1 UCSC:uc021rfv.1
GeneCards:GC12P123891 HGNC:HGNC:30852 neXtProt:NX_Q16560
PharmGKB:PA164726115 InParanoid:Q16560 ChiTaRS:SNRNP35
GenomeRNAi:11066 NextBio:42065 Bgee:Q16560 CleanEx:HS_SNRNP35
Genevestigator:Q16560 Uniprot:Q16560
Length = 246
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 45/100 (45%), Positives = 61/100 (61%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+A + PN DP TLF+AR+N T E KL+ F YG I+++ +V + VTG +G
Sbjct: 36 LARYVPNK--GVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKG 93
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVK 184
YAFIEY+ ER + AY+ ADG ID + VD E RT+K
Sbjct: 94 YAFIEYKEERAVIKAYRDADGLVIDQHEIFVDYELERTLK 133
>TAIR|locus:2058141 [details] [associations]
symbol:AT2G43370 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HSSP:Q9V535 HOGENOM:HOG000006374 KO:K13155
EMBL:AY072388 EMBL:AY114697 IPI:IPI00539495 RefSeq:NP_850395.1
UniGene:At.42685 ProteinModelPortal:Q8VY74 SMR:Q8VY74 IntAct:Q8VY74
STRING:Q8VY74 EnsemblPlants:AT2G43370.1 GeneID:818938
KEGG:ath:AT2G43370 TAIR:At2g43370 InParanoid:Q8VY74 OMA:RLVRHIV
PhylomeDB:Q8VY74 ProtClustDB:CLSN2680226 Genevestigator:Q8VY74
Uniprot:Q8VY74
Length = 333
Score = 210 (79.0 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 41/95 (43%), Positives = 59/95 (62%)
Query: 87 LWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYA 146
L+DP+ A DP+ TLF+ R+++ T+E LR YG IK + +V + VTG RGY
Sbjct: 49 LYDPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYG 108
Query: 147 FIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSR 181
F+EYE E++M AY+ A IDGR ++VD R +
Sbjct: 109 FVEYETEKEMLRAYEDAHHSLIDGREIIVDYNRQQ 143
>UNIPROTKB|F1NJ85 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00530000063750 OMA:QHEVFVD EMBL:AADN02034882
IPI:IPI00586472 ProteinModelPortal:F1NJ85
Ensembl:ENSGALT00000005257 Uniprot:F1NJ85
Length = 245
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 46/100 (46%), Positives = 62/100 (62%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+A + PN T DP TLF+AR+N T+E KL+ F YG I+KI +V + VTG +G
Sbjct: 41 LARYVPNK--GVTGDPHLTLFVARLNLQTTEEKLKEVFSRYGDIRKIRLVRDLVTGFSKG 98
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTVK 184
YAFIEY+ ER + A++ A+ ID V VD E RT+K
Sbjct: 99 YAFIEYKEERALLKAHRDANRLVIDQHEVFVDFELERTLK 138
>SGD|S000001323 [details] [associations]
symbol:SNP1 "Component of U1 snRNP required for mRNA splicing
via spliceosome" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IPI] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0030619 "U1 snRNA binding"
evidence=IPI] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0005685
"U1 snRNP" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000001323 GO:GO:0000166
EMBL:BK006942 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
EMBL:Z38060 GO:GO:0000243 eggNOG:COG0724 GO:GO:0071004
GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 HOGENOM:HOG000000970 OrthoDB:EOG4HMNKR
GO:GO:0030619 EMBL:X59986 EMBL:AY558085 PIR:S16815
RefSeq:NP_012203.1 ProteinModelPortal:Q00916 SMR:Q00916
DIP:DIP-663N IntAct:Q00916 MINT:MINT-397124 STRING:Q00916
PaxDb:Q00916 PeptideAtlas:Q00916 EnsemblFungi:YIL061C GeneID:854749
KEGG:sce:YIL061C CYGD:YIL061c OMA:ETSSSAY NextBio:977479
Genevestigator:Q00916 GermOnline:YIL061C Uniprot:Q00916
Length = 300
Score = 194 (73.4 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 43/111 (38%), Positives = 67/111 (60%)
Query: 78 AYKLEQEIALWDPNSFPNAT-MDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHN 136
A L++ + W+PN P+ DP++T+FI R+ YD E +L++ F +G I+KI +V +
Sbjct: 82 AQLLDRRLQNWNPNVDPHIKDTDPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKD 141
Query: 137 KVTGKPRGYAFIEYEHERDMHSAYKHAD---GKKIDGRRVLVDVERSRTVK 184
K+T K +GYAFI ++ A+K G +I R +VD+ER RTVK
Sbjct: 142 KITQKSKGYAFIVFKDPISSKMAFKEIGVHRGIQIKDRICIVDIERGRTVK 192
>ZFIN|ZDB-GENE-050706-77 [details] [associations]
symbol:snrnp35 "small nuclear ribonucleoprotein 35
(U11/U12)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050706-77 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:Q14103 GeneTree:ENSGT00530000063750 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD
OrthoDB:EOG4MSD0C EMBL:BC098619 IPI:IPI00616423
RefSeq:NP_001025412.1 UniGene:Dr.47462 ProteinModelPortal:Q4KMD3
Ensembl:ENSDART00000065243 GeneID:569999 KEGG:dre:569999
InParanoid:Q4KMD3 NextBio:20889939 Bgee:Q4KMD3 Uniprot:Q4KMD3
Length = 208
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 41/99 (41%), Positives = 62/99 (62%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+A + PN DP TLF+AR+N T+E KLR F +G I+++ +V + VTG +
Sbjct: 35 LARYKPNR--GVCGDPDLTLFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKR 92
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRTV 183
YAFIEY+ ER + A++ A+ +D +LVDVE+ RT+
Sbjct: 93 YAFIEYKEERSLKRAWRDANKLILDQYELLVDVEQERTL 131
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGP+ + +V+++ TG+ RG+AF+ +E D
Sbjct: 12 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDD 71
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A +HA+G ++DGRR+ VD
Sbjct: 72 SKEAMEHANGMELDGRRIRVD 92
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N+DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 67 NGKAVDGRQIRVD 79
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 30/92 (32%), Positives = 57/92 (61%)
Query: 91 NSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEY 150
+S P+++ P L+++ +++ T+E LR FE +G + + MV +KV +P+G+AF+ Y
Sbjct: 66 SSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRY 125
Query: 151 EHERDMHSAYKHADGKKIDGRRVLVDVERSRT 182
E E + A + GK +DGR + V+ ++R+
Sbjct: 126 ETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRS 157
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 154 (59.3 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGP+ + +V+++ TG+ RG+AF+ +E D
Sbjct: 115 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDD 174
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A +HA+G ++DGRR+ VD
Sbjct: 175 SKEAMEHANGMELDGRRIRVD 195
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI ++YDT+E L F YG I K+ ++ ++ T + RG+ F+ +E+ D A
Sbjct: 25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84
Query: 164 DGKKIDGRRVLVD 176
+GK++DGR + VD
Sbjct: 85 NGKQVDGRMIRVD 97
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 27/77 (35%), Positives = 49/77 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF++R++ T++ LR+ F +G IK+ ++ + T +P+G+ FI ++ E D A K
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 164 DGKKIDGRRVLVDVERS 180
DGK +DGR + V+V ++
Sbjct: 69 DGKIVDGRLIFVEVAKN 85
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGP+ + +V+++ TG+ RG+AF+ +E D
Sbjct: 12 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 71
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 72 SKEAMERANGMELDGRRIRVD 92
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGP+ + +V+++ TG+ RG+AF+ +E D
Sbjct: 12 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 71
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 72 SKEAMERANGMELDGRRIRVD 92
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N++T+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 67 NGKSVDGRQIRVD 79
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 24/73 (32%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +N++T+E L + F YG + ++V+V ++ + + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 147 (56.8 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGP+ + +V+++ TG+ RG+AF+ +E D
Sbjct: 113 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 172
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 173 SKEAMERANGMELDGRRIRVD 193
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 147 (56.8 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGP+ + +V+++ TG+ RG+AF+ +E D
Sbjct: 113 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 172
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 173 SKEAMERANGMELDGRRIRVD 193
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 147 (56.8 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGP+ + +V+++ TG+ RG+AF+ +E D
Sbjct: 113 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 172
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 173 SKEAMERANGMELDGRRIRVD 193
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 147 (56.8 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGP+ + +V+++ TG+ RG+AF+ +E D
Sbjct: 111 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 170
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 171 SKEAMERANGMELDGRRIRVD 191
>TAIR|locus:2088756 [details] [associations]
symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
Uniprot:Q8L440
Length = 374
Score = 150 (57.9 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 31/84 (36%), Positives = 54/84 (64%)
Query: 100 PFKT--LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMH 157
P KT LFI +++ TSE LR FE +G + ++ ++ +K++ + +GYAF+EY E
Sbjct: 278 PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAG 337
Query: 158 SAYKHADGKKIDGRRVLVDVERSR 181
+A K +GK I+G ++VDV +++
Sbjct: 338 TALKEMNGKIINGWMIVVDVAKTK 361
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 147 (56.8 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGP+ + +V+++ TG+ RG+AF+ +E D
Sbjct: 113 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 172
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 173 SKEAMERANGMELDGRRIRVD 193
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 147 (56.8 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGP+ + +V+++ TG+ RG+AF+ +E D
Sbjct: 111 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDD 170
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 171 SKEAMERANGMELDGRRIRVD 191
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 146 (56.5 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 146 (56.5 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 146 (56.5 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YG + + +V+++ TG+ RG+AF+ +EH D
Sbjct: 129 ANPDPNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDD 188
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 189 AKEAMERANGMELDGRRIRVD 209
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +N++T+E L F +GPI ++V+V ++ T + RG+ FI + + A +
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSLDGRQIRVD 80
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
L++ +NY ++ L R F YG +K +V ++ TG+ RG+ F+E +++ +A
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGL 64
Query: 164 DGKKIDGRRVLVDVER 179
+GK++DGR ++V+ R
Sbjct: 65 NGKEMDGRNLMVNEAR 80
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT E L F YG I+++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKTVDGRQIRVD 80
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +++DT+E L F YG I + + N+ T + RG+ F+ +E+ D A +
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR + VD
Sbjct: 67 NGKSVDGRTIRVD 79
>UNIPROTKB|I3LBN9 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
Uniprot:I3LBN9
Length = 280
Score = 144 (55.7 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+ES LR F YGPI + +V+++ + + RG+AF+ +E+ D
Sbjct: 104 ANPDPNCCLGVFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 163
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 164 AKEAKERANGMELDGRRIRVD 184
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 146 (56.5 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ ++YD SE +R F G + I MVH++ TGKP+GY FIE+ + A +
Sbjct: 18 RSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIR 77
Query: 162 HADGKKIDGRRVLVD 176
+ +G ++ GR + VD
Sbjct: 78 NLNGYELSGRILRVD 92
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
L + +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
L + +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
L + +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGKKIDGRRVLVD 176
+GK +DGR++ VD
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|Q9BRL6 [details] [associations]
symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
Length = 282
Score = 143 (55.4 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 31/86 (36%), Positives = 43/86 (50%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P +D TL + + Y TS LRR FE YG + + + T PRG+AF+ +
Sbjct: 6 PPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDR 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG ++DGR + V V R
Sbjct: 66 RDAQDAEAAMDGAELDGRELRVQVAR 91
>TAIR|locus:2144945 [details] [associations]
symbol:SCL28 "SC35-like splicing factor 28" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 KO:K12900 EMBL:DQ446966 IPI:IPI00533357
RefSeq:NP_197382.3 UniGene:At.10034 ProteinModelPortal:Q1PDV2
SMR:Q1PDV2 STRING:Q1PDV2 PRIDE:Q1PDV2 EnsemblPlants:AT5G18810.1
GeneID:831999 KEGG:ath:AT5G18810 TAIR:At5g18810 InParanoid:Q1PDV2
OMA:GFVKYRY PhylomeDB:Q1PDV2 Genevestigator:Q1PDV2 Uniprot:Q1PDV2
Length = 236
Score = 140 (54.3 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 32/93 (34%), Positives = 49/93 (52%)
Query: 90 PNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIE 149
P+S + + P L I + D + LR FE +GP+K I + N TG+PRG+ F++
Sbjct: 36 PSSRDHESSGP-SGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVK 94
Query: 150 YEHERDMHSAYKHADGKKIDGRRV-LVDVERSR 181
Y + D A K + K I GR + +V E +R
Sbjct: 95 YRYAEDAAEAMKRMNHKVIGGREIAIVFAEENR 127
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 28/90 (31%), Positives = 53/90 (58%)
Query: 92 SFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYE 151
S P A+ + TLF+ R++++ ++ L+REFE G + ++ + TGK RGY ++++E
Sbjct: 158 SKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFE 217
Query: 152 HERDMHSAYKHADGKKIDGRRVLVDVERSR 181
+ A + GK+IDGR + +D+ +
Sbjct: 218 SKSAAEKALEEMQGKEIDGRPINLDMSTGK 247
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 28/90 (31%), Positives = 53/90 (58%)
Query: 92 SFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYE 151
S P A+ + TLF+ R++++ ++ L+REFE G + ++ + TGK RGY ++++E
Sbjct: 158 SKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFE 217
Query: 152 HERDMHSAYKHADGKKIDGRRVLVDVERSR 181
+ A + GK+IDGR + +D+ +
Sbjct: 218 SKSAAEKALEEMQGKEIDGRPINLDMSTGK 247
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +N++T E L F +GPI ++V+V ++ T + RG+ FI + + +A +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 164 DGKKIDGRRVLVD 176
+G+ +DGR++ VD
Sbjct: 68 NGESLDGRQIRVD 80
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +N++T E L F +GPI ++V+V ++ T + RG+ FI + + +A +
Sbjct: 8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 164 DGKKIDGRRVLVD 176
+G+ +DGR++ VD
Sbjct: 68 NGESLDGRQIRVD 80
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSA 159
P +LF+ V DT LRREF YGPI + + + T +PRG+A++++E RD A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 160 YKHADGKKIDGRRV 173
+ D K I GR++
Sbjct: 68 LHNLDRKWICGRQI 81
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSA 159
P +LF+ V DT LRREF YGPI + + + T +PRG+A++++E RD A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 160 YKHADGKKIDGRRV 173
+ D K I GR++
Sbjct: 68 LHNLDRKWICGRQI 81
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSA 159
P +LF+ V DT LRREF YGPI + + + T +PRG+A++++E RD A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 160 YKHADGKKIDGRRV 173
+ D K I GR++
Sbjct: 68 LHNLDRKWICGRQI 81
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +N++T E L F +GPI ++V+V ++ T + RG+ FI + + A +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 164 DGKKIDGRRVLVD 176
+G+ +DGR++ VD
Sbjct: 68 NGESLDGRQIRVD 80
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSA 159
P +LF+ V DT LRREF YGPI + + + T +PRG+A++++E RD A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 160 YKHADGKKIDGRRV 173
+ D K I GR++
Sbjct: 68 LHNLDRKWICGRQI 81
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +N++T E L F +GPI ++V+V ++ T + RG+ FI + + A +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 164 DGKKIDGRRVLVD 176
+G+ +DGR++ VD
Sbjct: 68 NGESLDGRQIRVD 80
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 22/79 (27%), Positives = 50/79 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++ T +S L++ F +G + + ++ ++ TG+ RG+ F+ + E ++A K
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 164 DGKKIDGRRVLVDVERSRT 182
DGK+++GR++ V++ R+
Sbjct: 97 DGKELNGRQIRVNLATERS 115
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 145 (56.1 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 29/88 (32%), Positives = 53/88 (60%)
Query: 98 MDP-FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156
MD +++F+ + Y+ +E KL+ F GP+ + +V ++ +GKP+G+ F EY+ +
Sbjct: 11 MDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETA 70
Query: 157 HSAYKHADGKKIDGRRVLVD---VERSR 181
SA ++ +G +I GR + VD E+SR
Sbjct: 71 LSAMRNLNGYEIGGRTLRVDNACTEKSR 98
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 145 (56.1 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 141 (54.7 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGPI + +V+++ + + RG+AF+ +E+ D
Sbjct: 112 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVED 171
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 172 AKEAKERANGMELDGRRIRVD 192
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 145 (56.1 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 141 (54.7 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+ L P PNA P KTLF+ ++ DT+E L+ F+ G ++ + V ++ TG +G
Sbjct: 180 LELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARI-VTDRETGSSKG 236
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
+ F+++ E D +A + + +IDG +V +D
Sbjct: 237 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 268
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 145 (56.1 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 145 (56.1 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 145 (56.1 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 145 (56.1 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 145 (56.1 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 145 (56.1 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 145 (56.1 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 145 (56.1 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +N++T E L F +GPI ++V+V ++ T + RG+ FI + A +
Sbjct: 8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67
Query: 164 DGKKIDGRRVLVD 176
+G+ +DGR++ VD
Sbjct: 68 NGESLDGRQIRVD 80
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +N++T E L F +GPI ++V+V ++ T + RG+ FI + + A +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 164 DGKKIDGRRVLVD 176
+G+ +DGR++ VD
Sbjct: 68 NGESLDGRQIRVD 80
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 145 (56.1 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 145 (56.1 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 145 (56.1 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 145 (56.1 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 145 (56.1 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 145 (56.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 135 (52.6 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P +D +L + + Y TS LRR FE YG + + + ++ T + RG+AF+ + +
Sbjct: 6 PPPDVDGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG +DGR + V + R
Sbjct: 66 RDAEDAMDAMDGAILDGRELRVQMAR 91
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 139 (54.0 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGPI + +V+++ + + RG+AF+ +E+ D
Sbjct: 112 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 172 AKEAKERANGMELDGRRIRVD 192
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 139 (54.0 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGPI + +V+++ + + RG+AF+ +E+ D
Sbjct: 112 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 172 AKEAKERANGMELDGRRIRVD 192
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 139 (54.0 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGPI + +V+++ + + RG+AF+ +E+ D
Sbjct: 112 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 172 AKEAKERANGMELDGRRIRVD 192
>MGI|MGI:106016 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
Uniprot:P62996
Length = 288
Score = 139 (54.0 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGPI + +V+++ + + RG+AF+ +E+ D
Sbjct: 112 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 172 AKEAKERANGMELDGRRIRVD 192
>RGD|619886 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000302 "response to reactive oxygen species"
evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
Length = 288
Score = 139 (54.0 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGPI + +V+++ + + RG+AF+ +E+ D
Sbjct: 112 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 172 AKEAKERANGMELDGRRIRVD 192
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 145 (56.1 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA +
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 76 NLNGREFSGRALRVD 90
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 144 (55.7 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+ L P PNA P KTLF+ ++ DT+E L+ FE G ++ + V ++ TG +G
Sbjct: 412 LELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARI-VTDRETGSSKG 468
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
+ F+++ E D +A + + +IDG +V +D
Sbjct: 469 FGFVDFNSEEDAKTAKEAMEDGEIDGNKVTLD 500
>GENEDB_PFALCIPARUM|PFE0160c [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AL844504
HSSP:Q61474 RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468
IntAct:Q8I468 MINT:MINT-1654287 PRIDE:Q8I468
EnsemblProtists:PFE0160c:mRNA GeneID:812926 KEGG:pfa:PFE0160c
EuPathDB:PlasmoDB:PF3D7_0503300 HOGENOM:HOG000284061 OMA:ANTESTQ
ProtClustDB:CLSZ2848078 Uniprot:Q8I468
Length = 308
Score = 139 (54.0 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 28/81 (34%), Positives = 50/81 (61%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
+L I ++ +DTS S +R +F+ +G IK + + + T +PRG+ F+E+ +D A K
Sbjct: 13 SLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKEPRGFGFVEFYDAKDAEQALKE 72
Query: 163 ADGKKIDGRRVLVDV-ERSRT 182
+G +IDG R+ V V ++ R+
Sbjct: 73 MNGSEIDGSRIEVFVAQKGRS 93
>UNIPROTKB|Q8I468 [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HSSP:Q61474
RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468 IntAct:Q8I468
MINT:MINT-1654287 PRIDE:Q8I468 EnsemblProtists:PFE0160c:mRNA
GeneID:812926 KEGG:pfa:PFE0160c EuPathDB:PlasmoDB:PF3D7_0503300
HOGENOM:HOG000284061 OMA:ANTESTQ ProtClustDB:CLSZ2848078
Uniprot:Q8I468
Length = 308
Score = 139 (54.0 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 28/81 (34%), Positives = 50/81 (61%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
+L I ++ +DTS S +R +F+ +G IK + + + T +PRG+ F+E+ +D A K
Sbjct: 13 SLLIRKLKFDTSPSIVREKFKRFGAIKDVYLPIDYYTKEPRGFGFVEFYDAKDAEQALKE 72
Query: 163 ADGKKIDGRRVLVDV-ERSRT 182
+G +IDG R+ V V ++ R+
Sbjct: 73 MNGSEIDGSRIEVFVAQKGRS 93
>UNIPROTKB|O75494 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IDA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=NAS]
[GO:0006376 "mRNA splice site selection" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016482
"cytoplasmic transport" evidence=IDA] [GO:0051082 "unfolded protein
binding" evidence=NAS] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0050733 "RS domain binding"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0006406 GO:GO:0016482 GO:GO:0048025
GO:GO:0006376 HOVERGEN:HBG107480 EMBL:AL590609 EMBL:AF047448
EMBL:AF067730 EMBL:AF449427 EMBL:AY150180 EMBL:AY150181
EMBL:AF419331 EMBL:AF419332 EMBL:AY048592 EMBL:AK001286
EMBL:AK001656 EMBL:AK296175 EMBL:BC001107 EMBL:BC005039
EMBL:BC010074 IPI:IPI00009071 IPI:IPI00074587 IPI:IPI00386662
IPI:IPI00412643 IPI:IPI00979506 RefSeq:NP_001177934.1
RefSeq:NP_001177935.1 RefSeq:NP_001177938.1 RefSeq:NP_006616.1
RefSeq:NP_473357.1 RefSeq:XP_003846472.1 RefSeq:XP_003846473.1
RefSeq:XP_003960063.1 UniGene:Hs.3530 UniGene:Hs.652334
ProteinModelPortal:O75494 SMR:O75494 IntAct:O75494
MINT:MINT-5002282 STRING:O75494 PhosphoSite:O75494 PaxDb:O75494
PRIDE:O75494 DNASU:10772 Ensembl:ENST00000343255
Ensembl:ENST00000344989 Ensembl:ENST00000374452
Ensembl:ENST00000453840 Ensembl:ENST00000492112 GeneID:100996657
GeneID:10772 KEGG:hsa:100996657 KEGG:hsa:10772 UCSC:uc021oin.1
UCSC:uc021oio.1 UCSC:uc021oir.1 UCSC:uc021ois.1 CTD:10772
GeneCards:GC01M024293 HGNC:HGNC:16713 MIM:605221 neXtProt:NX_O75494
PharmGKB:PA28427 eggNOG:NOG312850 InParanoid:O75494 KO:K12900
OMA:FAYVQYT OrthoDB:EOG4HMJBR NextBio:40903 ArrayExpress:O75494
Bgee:O75494 Genevestigator:O75494 GermOnline:ENSG00000188529
GO:GO:0050733 Uniprot:O75494
Length = 262
Score = 137 (53.3 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSA 159
P +LF+ V DT LRREF YGPI + + + T +PRG+A++++E RD A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 160 YKHADGKKIDGRRV 173
+ D K I GR++
Sbjct: 68 LHNLDRKWICGRQI 81
>MGI|MGI:1333805 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO;IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISO;IC] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=ISO;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;IDA] [GO:0051082 "unfolded
protein binding" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1333805 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 GO:GO:0016482 GO:GO:0048025 GO:GO:0006376
HOVERGEN:HBG107480 EMBL:AL672076 GeneTree:ENSGT00700000104403
CTD:10772 eggNOG:NOG312850 KO:K12900 OMA:FAYVQYT OrthoDB:EOG4HMJBR
EMBL:AF042383 EMBL:AB015894 EMBL:AB015895 EMBL:AF060490
EMBL:AK014345 EMBL:AK168524 EMBL:AK168558 EMBL:BC037591
EMBL:BC043060 EMBL:BC083082 IPI:IPI00117232 IPI:IPI00473196
IPI:IPI00990689 RefSeq:NP_001073856.1 RefSeq:NP_034308.1
UniGene:Mm.10229 UniGene:Mm.472035 ProteinModelPortal:Q9R0U0
SMR:Q9R0U0 STRING:Q9R0U0 PhosphoSite:Q9R0U0 PaxDb:Q9R0U0
PRIDE:Q9R0U0 Ensembl:ENSMUST00000097844 Ensembl:ENSMUST00000105853
Ensembl:ENSMUST00000126641 GeneID:14105 KEGG:mmu:14105
UCSC:uc008vhb.1 UCSC:uc008vhd.1 InParanoid:B1AV44 ChiTaRS:SRSF10
NextBio:285142 Bgee:Q9R0U0 CleanEx:MM_FUSIP1 Genevestigator:Q9R0U0
GermOnline:ENSMUSG00000028676 Uniprot:Q9R0U0
Length = 262
Score = 137 (53.3 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSA 159
P +LF+ V DT LRREF YGPI + + + T +PRG+A++++E RD A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 160 YKHADGKKIDGRRV 173
+ D K I GR++
Sbjct: 68 LHNLDRKWICGRQI 81
>UNIPROTKB|F2Z3T5 [details] [associations]
symbol:Fusip1 "Protein Fusip1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00195918
ProteinModelPortal:F2Z3T5 SMR:F2Z3T5 PRIDE:F2Z3T5
Ensembl:ENSRNOT00000011154 Uniprot:F2Z3T5
Length = 262
Score = 137 (53.3 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSA 159
P +LF+ V DT LRREF YGPI + + + T +PRG+A++++E RD A
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67
Query: 160 YKHADGKKIDGRRV 173
+ D K I GR++
Sbjct: 68 LHNLDRKWICGRQI 81
>UNIPROTKB|E1C3R0 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl
cis-trans isomerase activity" evidence=IEA] [GO:0006457 "protein
folding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 GO:GO:0006457
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00670000097658
KO:K12735 OMA:DRTQNRS CTD:85313 EMBL:AADN02025352 IPI:IPI00603037
RefSeq:XP_419663.2 UniGene:Gga.34615 ProteinModelPortal:E1C3R0
Ensembl:ENSGALT00000020195 GeneID:421625 KEGG:gga:421625
NextBio:20824363 Uniprot:E1C3R0
Length = 478
Score = 142 (55.0 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 33/88 (37%), Positives = 49/88 (55%)
Query: 94 PNATMDPFKT-LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEH 152
P+A + P + LF+ ++N T++ L F +GPIK ++ + TG+ YAFIE+E
Sbjct: 231 PDAEVKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIKSCEVIRDWKTGESLCYAFIEFEK 290
Query: 153 ERDMHSAYKHADGKKIDGRRVLVDVERS 180
E D AY D ID RR+ VD +S
Sbjct: 291 EEDCEKAYFKMDNVLIDDRRIHVDFSQS 318
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +++++ ++ T K RG+AF+ +E D A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKSLDGKAIKVE 82
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +N++T E L F +GPI ++V+V ++ T + RG+ FI + + +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 164 DGKKIDGRRVLVD 176
+G+ +DGR++ VD
Sbjct: 68 NGESLDGRQIRVD 80
>ZFIN|ZDB-GENE-040426-1094 [details] [associations]
symbol:tra2b "transformer 2 beta homolog
(Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1094
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q9V535
HOVERGEN:HBG107480 KO:K12897 CTD:6434 EMBL:BC049051 IPI:IPI00493400
RefSeq:NP_957491.1 UniGene:Dr.9221 ProteinModelPortal:Q7ZUG9
SMR:Q7ZUG9 STRING:Q7ZUG9 PRIDE:Q7ZUG9 GeneID:394172 KEGG:dre:394172
InParanoid:Q7ZUG9 NextBio:20815117 ArrayExpress:Q7ZUG9 Bgee:Q7ZUG9
Uniprot:Q7ZUG9
Length = 278
Score = 137 (53.3 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 96 ATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERD 155
A DP L + ++ T+E LR F YGP+ + +V+++ + + RG+A + +E+ D
Sbjct: 117 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPLSDVCIVYDQQSRRSRGFALVYFENRED 176
Query: 156 MHSAYKHADGKKIDGRRVLVD 176
A + A+G ++DGRR+ VD
Sbjct: 177 SKEAKERANGMELDGRRIRVD 197
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 144 (55.7 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+ L P PNA P KTLF+ ++ DT+E L+ FE G ++ + V ++ TG +G
Sbjct: 558 LELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARI-VTDRETGSSKG 614
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
+ F+++ E D +A + + +IDG +V +D
Sbjct: 615 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 646
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 144 (55.7 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+ L P PNA P KTLF+ ++ DT+E L+ FE G ++ + V ++ TG +G
Sbjct: 555 LELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARI-VTDRETGSSKG 611
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
+ F+++ E D +A + + +IDG +V +D
Sbjct: 612 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 643
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 144 (55.7 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+ L P PNA P KTLF+ ++ DT+E L+ FE G ++ + V ++ TG +G
Sbjct: 559 LELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARI-VTDRETGSSKG 615
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
+ F+++ E D +A + + +IDG +V +D
Sbjct: 616 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 647
>FB|FBgn0003742 [details] [associations]
symbol:tra2 "transformer 2" species:7227 "Drosophila
melanogaster" [GO:0007530 "sex determination" evidence=NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0006397 "mRNA
processing" evidence=NAS;IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0030237 "female sex determination" evidence=IMP]
[GO:0036002 "pre-mRNA binding" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;IDA] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP;IDA]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0007283
"spermatogenesis" evidence=NAS] [GO:0019102 "male somatic sex
determination" evidence=TAS] [GO:0019101 "female somatic sex
determination" evidence=NAS;TAS] [GO:0000245 "spliceosomal complex
assembly" evidence=NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0030154 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0007548
GO:GO:0019102 GO:GO:0071011 GO:GO:0000245 GO:GO:0000381
GeneTree:ENSGT00700000104309 GO:GO:0019101 KO:K12897
eggNOG:NOG297815 EMBL:M23633 EMBL:X57484 EMBL:M30939 EMBL:M76381
EMBL:AY058768 EMBL:J03155 PIR:A32373 PIR:D35846 PIR:S12003
RefSeq:NP_476763.1 RefSeq:NP_476764.1 RefSeq:NP_476765.1
RefSeq:NP_476766.1 RefSeq:NP_599107.1 RefSeq:NP_995834.1
RefSeq:NP_995835.1 UniGene:Dm.4216 ProteinModelPortal:P19018
SMR:P19018 DIP:DIP-17430N IntAct:P19018 MINT:MINT-277223
STRING:P19018 PaxDb:P19018 PRIDE:P19018 EnsemblMetazoa:FBtr0089617
EnsemblMetazoa:FBtr0089620 EnsemblMetazoa:FBtr0089621 GeneID:36619
KEGG:dme:Dmel_CG10128 CTD:36619 FlyBase:FBgn0003742
InParanoid:P19018 OMA:KDACTGM OrthoDB:EOG4TQJSF PhylomeDB:P19018
GenomeRNAi:36619 NextBio:799520 Bgee:P19018 GermOnline:CG10128
Uniprot:P19018
Length = 264
Score = 136 (52.9 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 109 VNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI 168
+N +TS+ K+R F YGPI++I MV + T + RG+ FI +E D +A G ++
Sbjct: 104 LNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEV 163
Query: 169 DGRRVLVD 176
DGRR+ VD
Sbjct: 164 DGRRIRVD 171
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P ++ +L + + Y TS LRR FE YG + + + ++ T + RG+AF+ + +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG +DGR + V + R
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMAR 91
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P ++ +L + + Y TS LRR FE YG + + + ++ T + RG+AF+ + +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG +DGR + V + R
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMAR 91
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P ++ +L + + Y TS LRR FE YG + + + ++ T + RG+AF+ + +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG +DGR + V + R
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMAR 91
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 23/68 (33%), Positives = 42/68 (61%)
Query: 109 VNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHADGKKI 168
+ Y+ +E +L+ F GP+ +V+++ TGKP+GY F EY+ + SA ++ +G++
Sbjct: 4 IPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 63
Query: 169 DGRRVLVD 176
GR + VD
Sbjct: 64 SGRALRVD 71
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 139 (54.0 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +TSE L F +G I +++++ ++ T K RG+AF+ YE+ D A +
Sbjct: 10 LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREM 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKPLDGKPIKVE 82
>UNIPROTKB|O75526 [details] [associations]
symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
Length = 392
Score = 139 (54.0 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T E L EF YG I +++++ ++ T K RG+AF+ +E D +A +
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69
Query: 164 DGKKIDGRRVLV 175
+GK +DG+ + V
Sbjct: 70 NGKSLDGKAIKV 81
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 142 (55.0 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+ L P PNA P KTLF+ ++ DT+E L+ F+ G I+ + V ++ TG +G
Sbjct: 470 LELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSIRARI-VTDRETGSSKG 526
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
+ F+++ E D +A + + +IDG +V +D
Sbjct: 527 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 558
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 142 (55.0 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+ L P PNA P KTLF+ ++ DT+E L+ F+ G I+ + V ++ TG +G
Sbjct: 475 LELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSIRARI-VTDRETGSSKG 531
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
+ F+++ E D +A + + +IDG +V +D
Sbjct: 532 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 563
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 142 (55.0 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+ L P PNA P KTLF+ ++ DT+E L+ F+ G I+ + V ++ TG +G
Sbjct: 475 LELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSIRARI-VTDRETGSSKG 531
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
+ F+++ E D +A + + +IDG +V +D
Sbjct: 532 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 563
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 138 (53.6 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+ L P PNA P KTLF+ ++ +T+E L+ F+ G I+ + V ++ TG +G
Sbjct: 209 LELQGPRGSPNARSQPSKTLFVKGLSEETTEETLKESFD--GSIRARI-VTDRETGSSKG 265
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
+ F+++ E D +A + + +IDG +V +D
Sbjct: 266 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 297
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 132 (51.5 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P ++ +L + + Y TS LRR FE YG + + + ++ T + RG+AF+ + +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG +DGR + V + R
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMAR 91
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 132 (51.5 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P ++ +L + + Y TS LRR FE YG + + + ++ T + RG+AF+ + +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG +DGR + V + R
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMAR 91
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 132 (51.5 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P ++ +L + + Y TS LRR FE YG + + + ++ T + RG+AF+ + +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG +DGR + V + R
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMAR 91
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 132 (51.5 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P ++ +L + + Y TS LRR FE YG + + + ++ T + RG+AF+ + +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG +DGR + V + R
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMAR 91
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 132 (51.5 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P ++ +L + + Y TS LRR FE YG + + + ++ T + RG+AF+ + +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG +DGR + V + R
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMAR 91
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 132 (51.5 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P ++ +L + + Y TS LRR FE YG + + + ++ T + RG+AF+ + +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG +DGR + V + R
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMAR 91
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 132 (51.5 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P ++ +L + + Y TS LRR FE YG + + + ++ T + RG+AF+ + +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG +DGR + V + R
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMAR 91
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 132 (51.5 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P ++ +L + + Y TS LRR FE YG + + + ++ T + RG+AF+ + +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG +DGR + V + R
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMAR 91
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+ L P PNA P KTLF+ ++ DT+E L+ F+ G I+ + V ++ TG +G
Sbjct: 565 LELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSIRARI-VTDRETGSSKG 621
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
+ F+++ E D +A + + +IDG +V +D
Sbjct: 622 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 653
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 132 (51.5 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 94 PNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHE 153
P ++ +L + + Y TS LRR FE YG + + + ++ T + RG+AF+ + +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 154 RDMHSAYKHADGKKIDGRRVLVDVER 179
RD A DG +DGR + V + R
Sbjct: 66 RDAEDAMDAMDGALLDGRELRVQMAR 91
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 138 (53.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T E L F YG I +++++ ++ T K RG+AFI +E D +A +
Sbjct: 10 LFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDM 69
Query: 164 DGKKIDGRRVLV 175
+GK +DG+ + V
Sbjct: 70 NGKSLDGKAIKV 81
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 138 (53.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 25/80 (31%), Positives = 48/80 (60%)
Query: 98 MD-PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156
MD +++F+ + Y+ +E +L+ F G + +V+++ TGKP+GY F EY+ +
Sbjct: 15 MDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETA 74
Query: 157 HSAYKHADGKKIDGRRVLVD 176
SA ++ +G++ GR + VD
Sbjct: 75 LSAMRNLNGREFSGRALRVD 94
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 141 (54.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+ L P PNA P KTLF+ ++ DT+E L+ F+ G ++ + V ++ TG +G
Sbjct: 555 LELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARI-VTDRETGSSKG 611
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
+ F+++ E D +A + + +IDG +V +D
Sbjct: 612 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 643
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 141 (54.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+ L P PNA P KTLF+ ++ DT+E L+ F+ G ++ + V ++ TG +G
Sbjct: 556 LELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARI-VTDRETGSSKG 612
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
+ F+++ E D +A + + +IDG +V +D
Sbjct: 613 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 644
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 141 (54.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+ L P PNA P KTLF+ ++ DT+E L+ F+ G ++ + V ++ TG +G
Sbjct: 557 LELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARI-VTDRETGSSKG 613
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
+ F+++ E D +A + + +IDG +V +D
Sbjct: 614 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 645
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 141 (54.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+ L P PNA P KTLF+ ++ DT+E L+ F+ G ++ + V ++ TG +G
Sbjct: 560 LELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARI-VTDRETGSSKG 616
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
+ F+++ E D +A + + +IDG +V +D
Sbjct: 617 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 648
>UNIPROTKB|F1N6W2 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 KO:K12735 OMA:DRTQNRS CTD:85313
EMBL:DAAA02027047 EMBL:DAAA02027048 EMBL:DAAA02027049
EMBL:DAAA02027050 IPI:IPI00716338 RefSeq:NP_001193016.1
UniGene:Bt.9312 ProteinModelPortal:F1N6W2
Ensembl:ENSBTAT00000022582 GeneID:535676 KEGG:bta:535676
NextBio:20876809 ArrayExpress:F1N6W2 Uniprot:F1N6W2
Length = 492
Score = 138 (53.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 34/99 (34%), Positives = 52/99 (52%)
Query: 83 QEIALWDPNSFPNATMDPFKT-LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGK 141
Q I L P+A + P + LF+ ++N T++ L F +GPI+ ++ + TG+
Sbjct: 220 QAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGE 279
Query: 142 PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180
YAFIE+E E D A+ D ID RR+ VD +S
Sbjct: 280 SLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQS 318
>UNIPROTKB|Q8WUA2 [details] [associations]
symbol:PPIL4 "Peptidyl-prolyl cis-trans isomerase-like 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006457
"protein folding" evidence=IEA] [GO:0003755 "peptidyl-prolyl
cis-trans isomerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 EMBL:CH471051
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 EMBL:AL078581 HOGENOM:HOG000186284
KO:K12735 OMA:DRTQNRS EMBL:AF357880 EMBL:AK315388 EMBL:BX537536
EMBL:AL357619 EMBL:BC020986 IPI:IPI00642862 RefSeq:NP_624311.1
UniGene:Hs.740616 ProteinModelPortal:Q8WUA2 SMR:Q8WUA2
IntAct:Q8WUA2 MINT:MINT-1182736 STRING:Q8WUA2 PhosphoSite:Q8WUA2
DMDM:74760546 PaxDb:Q8WUA2 PeptideAtlas:Q8WUA2 PRIDE:Q8WUA2
DNASU:85313 Ensembl:ENST00000253329 GeneID:85313 KEGG:hsa:85313
UCSC:uc003qmo.2 CTD:85313 GeneCards:GC06M149867 HGNC:HGNC:15702
HPA:HPA031600 MIM:607609 neXtProt:NX_Q8WUA2 PharmGKB:PA33590
HOVERGEN:HBG057731 InParanoid:Q8WUA2 OrthoDB:EOG4QVCC7
PhylomeDB:Q8WUA2 GenomeRNAi:85313 NextBio:75805 ArrayExpress:Q8WUA2
Bgee:Q8WUA2 CleanEx:HS_PPIL4 Genevestigator:Q8WUA2
GermOnline:ENSG00000131013 Uniprot:Q8WUA2
Length = 492
Score = 138 (53.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 34/99 (34%), Positives = 52/99 (52%)
Query: 83 QEIALWDPNSFPNATMDPFKT-LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGK 141
Q I L P+A + P + LF+ ++N T++ L F +GPI+ ++ + TG+
Sbjct: 220 QAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGE 279
Query: 142 PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180
YAFIE+E E D A+ D ID RR+ VD +S
Sbjct: 280 SLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQS 318
>MGI|MGI:1914668 [details] [associations]
symbol:Ppil4 "peptidylprolyl isomerase (cyclophilin)-like 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006457
"protein folding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1914668
GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00670000097658 HOGENOM:HOG000186284
KO:K12735 OMA:DRTQNRS CTD:85313 HOVERGEN:HBG057731
OrthoDB:EOG4QVCC7 EMBL:AK011443 EMBL:AK014406 EMBL:AK167258
EMBL:BC079912 IPI:IPI00110280 RefSeq:NP_080417.2 UniGene:Mm.38927
ProteinModelPortal:Q9CXG3 SMR:Q9CXG3 PhosphoSite:Q9CXG3
PaxDb:Q9CXG3 PRIDE:Q9CXG3 Ensembl:ENSMUST00000015901 GeneID:67418
KEGG:mmu:67418 UCSC:uc007eip.2 InParanoid:Q9CXG3 NextBio:324510
Bgee:Q9CXG3 CleanEx:MM_PPIL4 Genevestigator:Q9CXG3
GermOnline:ENSMUSG00000015757 Uniprot:Q9CXG3
Length = 492
Score = 138 (53.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 34/99 (34%), Positives = 52/99 (52%)
Query: 83 QEIALWDPNSFPNATMDPFKT-LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGK 141
Q I L P+A + P + LF+ ++N T++ L F +GPI+ ++ + TG+
Sbjct: 220 QAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGE 279
Query: 142 PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180
YAFIE+E E D A+ D ID RR+ VD +S
Sbjct: 280 SLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQS 318
>RGD|1311051 [details] [associations]
symbol:Ppil4 "peptidylprolyl isomerase (cyclophilin)-like 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 RGD:1311051 GO:GO:0006457
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00670000097658
OMA:DRTQNRS OrthoDB:EOG4QVCC7 IPI:IPI00365361
Ensembl:ENSRNOT00000021437 UCSC:RGD:1311051 Uniprot:D4AEG3
Length = 492
Score = 138 (53.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 34/99 (34%), Positives = 52/99 (52%)
Query: 83 QEIALWDPNSFPNATMDPFKT-LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGK 141
Q I L P+A + P + LF+ ++N T++ L F +GPI+ ++ + TG+
Sbjct: 220 QAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGE 279
Query: 142 PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180
YAFIE+E E D A+ D ID RR+ VD +S
Sbjct: 280 SLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQS 318
>UNIPROTKB|F1P661 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 EMBL:AAEX03000263
Ensembl:ENSCAFT00000000593 OMA:ERDGHYG NextBio:20858300
Uniprot:F1P661
Length = 526
Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 34/99 (34%), Positives = 52/99 (52%)
Query: 83 QEIALWDPNSFPNATMDPFKT-LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGK 141
Q I L P+A + P + LF+ ++N T++ L F +GPI+ ++ + TG+
Sbjct: 254 QAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGE 313
Query: 142 PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180
YAFIE+E E D A+ D ID RR+ VD +S
Sbjct: 314 SLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQS 352
>UNIPROTKB|I3LGX0 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 OMA:ERDGHYG EMBL:CU459105
EMBL:CU915504 EMBL:AEMK01192340 Ensembl:ENSSSCT00000024741
Uniprot:I3LGX0
Length = 471
Score = 137 (53.3 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 83 QEIALWDPNSFPNATMDPFKT-LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGK 141
Q I L P+A + P + LF+ ++N T + L F +GPI+ ++ + TG+
Sbjct: 197 QAILLEMVGDLPDADIKPPENVLFVCKLNSVTPDEDLEIIFSRFGPIRSCEVIRDWKTGE 256
Query: 142 PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180
YAFIE+E E D A+ D ID RR+ VD +S
Sbjct: 257 SLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQS 295
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 138 (53.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 25/80 (31%), Positives = 48/80 (60%)
Query: 98 MD-PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156
MD +++F+ + Y+ +E +L+ F G + +V+++ TGKP+GY F EY+ +
Sbjct: 11 MDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
Query: 157 HSAYKHADGKKIDGRRVLVD 176
SA ++ +G++ GR + VD
Sbjct: 71 LSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 133 (51.9 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +++++ ++ T K RG+AF+ +E D A +
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 72 NGKSLDGKAIKVE 84
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 133 (51.9 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +++++ ++ T K RG+AF+ +E D A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKSLDGKAIKVE 82
>UNIPROTKB|Q8N7X1 [details] [associations]
symbol:RBMXL3 "RNA-binding motif protein, X-linked-like-3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL589786 EMBL:AK301904 EMBL:AK097568 IPI:IPI00167369
RefSeq:NP_001138818.1 UniGene:Hs.376008 ProteinModelPortal:Q8N7X1
SMR:Q8N7X1 PhosphoSite:Q8N7X1 PaxDb:Q8N7X1 PRIDE:Q8N7X1
Ensembl:ENST00000424776 GeneID:139804 KEGG:hsa:139804
UCSC:uc011mte.1 CTD:139804 GeneCards:GC0XP114423 HGNC:HGNC:26859
neXtProt:NX_Q8N7X1 PharmGKB:PA164725338 eggNOG:NOG331461
HOGENOM:HOG000112105 InParanoid:Q8N7X1 OMA:YEEYRGR
OrthoDB:EOG4ZPDV2 GenomeRNAi:139804 NextBio:84044 Bgee:Q8N7X1
CleanEx:HS_CXorf55 Genevestigator:Q8N7X1 Uniprot:Q8N7X1
Length = 1067
Score = 141 (54.7 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N T E L+ EF YG I K+ ++ ++ T K RG+AF+ +E D +A +
Sbjct: 10 LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 164 DGKKIDGRRVLV 175
+GK +DG+ ++V
Sbjct: 70 NGKYLDGKAIMV 81
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 133 (51.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +++++ ++ T K RG+AF+ +E D A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKSLDGKAIKVE 82
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 25/80 (31%), Positives = 48/80 (60%)
Query: 98 MD-PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156
MD +++F+ + Y+ +E +L+ F G + +V+++ TGKP+GY F EY+ +
Sbjct: 11 MDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
Query: 157 HSAYKHADGKKIDGRRVLVD 176
SA ++ +G++ GR + VD
Sbjct: 71 LSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 25/80 (31%), Positives = 48/80 (60%)
Query: 98 MD-PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156
MD +++F+ + Y+ +E +L+ F G + +V+++ TGKP+GY F EY+ +
Sbjct: 11 MDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
Query: 157 HSAYKHADGKKIDGRRVLVD 176
SA ++ +G++ GR + VD
Sbjct: 71 LSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +++++ ++ T K RG+AF+ +E D A +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKSLDGKAIKVE 82
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 25/80 (31%), Positives = 48/80 (60%)
Query: 98 MD-PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156
MD +++F+ + Y+ +E +L+ F G + +V+++ TGKP+GY F EY+ +
Sbjct: 11 MDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
Query: 157 HSAYKHADGKKIDGRRVLVD 176
SA ++ +G++ GR + VD
Sbjct: 71 LSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 25/80 (31%), Positives = 48/80 (60%)
Query: 98 MD-PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156
MD +++F+ + Y+ +E +L+ F G + +V+++ TGKP+GY F EY+ +
Sbjct: 11 MDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
Query: 157 HSAYKHADGKKIDGRRVLVD 176
SA ++ +G++ GR + VD
Sbjct: 71 LSAMRNLNGREFSGRALRVD 90
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 25/80 (31%), Positives = 48/80 (60%)
Query: 98 MD-PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156
MD +++F+ + Y+ +E +L+ F G + +V+++ TGKP+GY F EY+ +
Sbjct: 11 MDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
Query: 157 HSAYKHADGKKIDGRRVLVD 176
SA ++ +G++ GR + VD
Sbjct: 71 LSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|B7ZMD9 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 UniGene:Hs.380450 EMBL:AC007322
HGNC:HGNC:23915 EMBL:BC136862 EMBL:BC144459 IPI:IPI00945061
SMR:B7ZMD9 Ensembl:ENST00000418956 UCSC:uc010nxb.2 Uniprot:B7ZMD9
Length = 459
Score = 136 (52.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 26/73 (35%), Positives = 47/73 (64%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L+ F +GPI +++++ ++ T K RG+AFI +E+ D +A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 164 DGKKIDGRRVLVD 176
+GK + G+ + V+
Sbjct: 69 NGKSLHGKAIKVE 81
>UNIPROTKB|J3KPK3 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC007322 HGNC:HGNC:23916 ProteinModelPortal:J3KPK3
Ensembl:ENST00000382658 Uniprot:J3KPK3
Length = 459
Score = 136 (52.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 26/73 (35%), Positives = 47/73 (64%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L+ F +GPI +++++ ++ T K RG+AFI +E+ D +A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 164 DGKKIDGRRVLVD 176
+GK + G+ + V+
Sbjct: 69 NGKSLHGKAIKVE 81
>UNIPROTKB|A6NDE4 [details] [associations]
symbol:RBMY1B "RNA-binding motif protein, Y chromosome,
family 1 member B" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=TAS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0005634 "nucleus" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008584
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AC010141 UniGene:Hs.380450 HPA:HPA001534
IPI:IPI00479500 RefSeq:NP_001006121.1 UniGene:Hs.725744
ProteinModelPortal:A6NDE4 SMR:A6NDE4 STRING:A6NDE4 PaxDb:A6NDE4
PRIDE:A6NDE4 Ensembl:ENST00000383020 GeneID:378948 KEGG:hsa:378948
UCSC:uc004fup.4 CTD:378948 GeneCards:GC0YP023674 HGNC:HGNC:23914
neXtProt:NX_A6NDE4 PharmGKB:PA134872137 eggNOG:NOG140744
InParanoid:A6NDE4 OMA:PRDYAYC OrthoDB:EOG4TF0N7 GenomeRNAi:378948
NextBio:100871 ArrayExpress:A6NDE4 Bgee:A6NDE4 CleanEx:HS_RBMY1B
Genevestigator:A6NDE4 Uniprot:A6NDE4
Length = 496
Score = 136 (52.9 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 26/73 (35%), Positives = 47/73 (64%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L+ F +GPI +++++ ++ T K RG+AFI +E+ D +A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 164 DGKKIDGRRVLVD 176
+GK + G+ + V+
Sbjct: 69 NGKSLHGKAIKVE 81
>UNIPROTKB|A6NEQ0 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 HPA:HPA001534 UniGene:Hs.725744 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00472030 RefSeq:NP_001006118.2
ProteinModelPortal:A6NEQ0 SMR:A6NEQ0 STRING:A6NEQ0
PhosphoSite:A6NEQ0 PRIDE:A6NEQ0 DNASU:378950
Ensembl:ENST00000382659 GeneID:378950 KEGG:hsa:378950
UCSC:uc004fux.4 CTD:378950 GeneCards:GC0YM024027 HGNC:HGNC:23916
neXtProt:NX_A6NEQ0 PharmGKB:PA134905273 OMA:PYCDREH
GenomeRNAi:378950 NextBio:100879 ArrayExpress:A6NEQ0 Bgee:A6NEQ0
Genevestigator:A6NEQ0 Uniprot:A6NEQ0
Length = 496
Score = 136 (52.9 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 26/73 (35%), Positives = 47/73 (64%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L+ F +GPI +++++ ++ T K RG+AFI +E+ D +A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 164 DGKKIDGRRVLVD 176
+GK + G+ + V+
Sbjct: 69 NGKSLHGKAIKVE 81
>UNIPROTKB|P0C7P1 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 UniGene:Hs.380450 HPA:HPA001534 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00215689 RefSeq:NP_001006120.2
ProteinModelPortal:P0C7P1 SMR:P0C7P1 PhosphoSite:P0C7P1
DMDM:190360153 PRIDE:P0C7P1 Ensembl:ENST00000382677
Ensembl:ENST00000382680 GeneID:378949 KEGG:hsa:378949
UCSC:uc004fuo.4 CTD:378949 GeneCards:GC0YM024026 HGNC:HGNC:23915
neXtProt:NX_P0C7P1 PharmGKB:PA134863616 InParanoid:P0C7P1
OMA:FIGGFNR GenomeRNAi:378949 NextBio:100875 ArrayExpress:P0C7P1
Bgee:P0C7P1 Genevestigator:P0C7P1 Uniprot:P0C7P1
Length = 496
Score = 136 (52.9 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 26/73 (35%), Positives = 47/73 (64%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L+ F +GPI +++++ ++ T K RG+AFI +E+ D +A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 164 DGKKIDGRRVLVD 176
+GK + G+ + V+
Sbjct: 69 NGKSLHGKAIKVE 81
>UNIPROTKB|P0DJD3 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member A1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0000381
InterPro:IPR012604 Pfam:PF08081 EMBL:X76059 EMBL:BC047768
EMBL:BC070298 EMBL:AC010141 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 RefSeq:NP_005049.1 UniGene:Hs.380450
PDB:2FY1 PDBsum:2FY1 ProteinModelPortal:P0DJD3 SMR:P0DJD3
DMDM:27805716 PRIDE:P0DJD3 Ensembl:ENST00000303902
Ensembl:ENST00000382707 GeneID:5940 KEGG:hsa:5940 CTD:5940
GeneCards:GC0YP023675 HGNC:HGNC:9912 HPA:HPA001534 MIM:400006
neXtProt:NX_P0DJD3 OMA:PREYASE PhylomeDB:P0DJD3 GenomeRNAi:5940
Bgee:P0DJD3 CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622
Uniprot:P0DJD3
Length = 496
Score = 136 (52.9 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 26/73 (35%), Positives = 47/73 (64%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L+ F +GPI +++++ ++ T K RG+AFI +E+ D +A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 164 DGKKIDGRRVLVD 176
+GK + G+ + V+
Sbjct: 69 NGKSLHGKAIKVE 81
>UNIPROTKB|P0DJD4 [details] [associations]
symbol:RBMY1C "RNA-binding motif protein, Y chromosome,
family 1 member C" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
InterPro:IPR012604 Pfam:PF08081 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 DMDM:27805716 HPA:HPA001534 MIM:400006
CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622 EMBL:U36608
EMBL:U36604 EMBL:U36605 EMBL:U36606 EMBL:U36607 EMBL:U36610
EMBL:U36609 ProteinModelPortal:P0DJD4 SMR:P0DJD4 PRIDE:P0DJD4
GeneCards:GC0YU900014 HGNC:HGNC:9914 neXtProt:NX_P0DJD4
Uniprot:P0DJD4
Length = 496
Score = 136 (52.9 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 26/73 (35%), Positives = 47/73 (64%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L+ F +GPI +++++ ++ T K RG+AFI +E+ D +A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 164 DGKKIDGRRVLVD 176
+GK + G+ + V+
Sbjct: 69 NGKSLHGKAIKVE 81
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 138 (53.6 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 85 IALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRG 144
+ L P PNA P KTLF+ ++ +T+E L+ F+ G I+ + V ++ TG +G
Sbjct: 568 LELQGPRGSPNARSQPSKTLFVKGLSEETTEETLKESFD--GSIRARI-VTDRETGSSKG 624
Query: 145 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 176
+ F+++ E D +A + + +IDG +V +D
Sbjct: 625 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 656
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 134 (52.2 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +I+++ ++ T K RG+AF+ +E D A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKSLDGKAIKVE 82
>TAIR|locus:2013016 [details] [associations]
symbol:CSTF64 "cleavage stimulating factor 64"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
processing" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048589
"developmental growth" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
Uniprot:Q9M9G6
Length = 461
Score = 135 (52.6 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+ +F+ + YD +E +LR GP+ +V ++ TGKP+GY F EY+ E SA +
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 68
Query: 162 HADGKKIDGRRVLVD 176
+ +I+GR++ VD
Sbjct: 69 NLQSYEINGRQLRVD 83
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 135 (52.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 23/75 (30%), Positives = 46/75 (61%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++F+ + Y+ +E +L+ F G + +V+++ TGKP+GY F EY+ + SA +
Sbjct: 24 RSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 83
Query: 162 HADGKKIDGRRVLVD 176
+ +G++ GR + VD
Sbjct: 84 NLNGREFSGRALRVD 98
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 133 (51.9 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +++++ ++ T K RG+AF+ +E D A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKSLDGKAIKVE 82
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 133 (51.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +++++ ++ T K RG+AF+ +E D A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKSLDGKAIKVE 82
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 133 (51.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +++++ ++ T K RG+AF+ +E D A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKSLDGKAIKVE 82
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 133 (51.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +++++ ++ T K RG+AF+ +E D A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKSLDGKAIKVE 82
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 133 (51.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +++++ ++ T K RG+AF+ +E D A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKSLDGKAIKVE 82
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 133 (51.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +++++ ++ T K RG+AF+ +E D A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKSLDGKAIKVE 82
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 133 (51.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +++++ ++ T K RG+AF+ +E D A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKSLDGKAIKVE 82
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 133 (51.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +++++ ++ T K RG+AF+ +E D A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKSLDGKAIKVE 82
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 133 (51.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +++++ ++ T K RG+AF+ +E D A +
Sbjct: 11 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 70
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 71 NGKSLDGKAIKVE 83
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 21/79 (26%), Positives = 46/79 (58%)
Query: 102 KTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK 161
+++++ V+Y ++ +L F G I+++ ++ ++ +G P+GYA+IE+E + A
Sbjct: 28 RSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQTESVQKAID 87
Query: 162 HADGKKIDGRRVLVDVERS 180
GK+ GR + V +R+
Sbjct: 88 ELHGKEFRGRELRVTAKRT 106
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 25/86 (29%), Positives = 49/86 (56%)
Query: 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156
TM K +++ ++YD + +L+ F YG I++ ++ ++ TG+ +G+AFI Y +
Sbjct: 14 TMSQNK-IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAA 72
Query: 157 HSAYKHADGKKIDGRRVLVDVERSRT 182
A A+G + GR++ V++ R T
Sbjct: 73 QEAVSKANGIDLQGRKIRVNIARENT 98
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 25/86 (29%), Positives = 49/86 (56%)
Query: 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156
TM K +++ ++YD + +L+ F YG I++ ++ ++ TG+ +G+AFI Y +
Sbjct: 14 TMSQNK-IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAA 72
Query: 157 HSAYKHADGKKIDGRRVLVDVERSRT 182
A A+G + GR++ V++ R T
Sbjct: 73 QEAVSKANGIDLQGRKIRVNIARENT 98
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 19/78 (24%), Positives = 47/78 (60%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
TLF+ +++ ++E L + F YG + K+ ++ +K+ +P+G+A++ + + + A
Sbjct: 22 TLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLE 81
Query: 163 ADGKKIDGRRVLVDVERS 180
+ + +DGR V++D ++
Sbjct: 82 LNAQLVDGRVVILDTTKA 99
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 27/94 (28%), Positives = 50/94 (53%)
Query: 90 PNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIE 149
P +++ P LFI +++ E L+ F +G + ++ + ++K +G+ RG+ F++
Sbjct: 29 PQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVD 88
Query: 150 YEHERDMHSAYKHADGKKIDGR--RVLVDVERSR 181
+ E D SA DGK + GR R+ +ER R
Sbjct: 89 FAEEGDALSAKDAMDGKGLLGRPLRISFALERVR 122
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +N++T E L F +GPI ++V+V + T + +G+ FI + + +A +
Sbjct: 8 LFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRAT 67
Query: 164 DGKKIDGRRVLVD 176
+G+ +DGR++ VD
Sbjct: 68 NGESLDGRQIHVD 80
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 21/77 (27%), Positives = 48/77 (62%)
Query: 105 FIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHAD 164
F+ + + T++ L+R F +G + +++++ +G+ RG+ F+ ++ E+ M A + +
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 165 GKKIDGRRVLVDVERSR 181
GK++DGR + V+ +SR
Sbjct: 69 GKELDGRVITVNEAQSR 85
>ZFIN|ZDB-GENE-030131-6251 [details] [associations]
symbol:ppil4 "peptidylprolyl isomerase
(cyclophilin)-like 4" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6251 GO:GO:0006457 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 HOVERGEN:HBG057731 HSSP:Q27450 EMBL:BC056814
IPI:IPI00505393 UniGene:Dr.80688 ProteinModelPortal:Q6PGV9
PRIDE:Q6PGV9 InParanoid:Q6PGV9 ArrayExpress:Q6PGV9 Bgee:Q6PGV9
Uniprot:Q6PGV9
Length = 454
Score = 132 (51.5 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 83 QEIALWDPNSFPNATMDPFKT-LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGK 141
Q I L P+A + P + LF+ ++N T++ L F +G IK ++ + TG+
Sbjct: 220 QAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGLIKCCEIIRDWKTGE 279
Query: 142 PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERS 180
YAFIE+E E D AY D ID RR+ VD +S
Sbjct: 280 SLCYAFIEFEKEEDCEKAYFKMDNVLIDDRRIHVDFSQS 318
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L+ F +GPI +++++ ++ T K RG+AFI +E+ D +A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 164 DGK 166
+GK
Sbjct: 69 NGK 71
>TAIR|locus:2119797 [details] [associations]
symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
Uniprot:Q67XI5
Length = 152
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 20/76 (26%), Positives = 44/76 (57%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+ + + + TSE L+REF +G I ++ ++ ++ + +GYAFI++ + D A +
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 164 DGKKIDGRRVLVDVER 179
D + +GR + +D+ +
Sbjct: 102 DRRMYNGRMIYIDIAK 117
>FB|FBgn0027617 [details] [associations]
symbol:CG5808 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0006457 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 KO:K12735 EMBL:AF132148
RefSeq:NP_651291.1 UniGene:Dm.3212 HSSP:P14832 SMR:Q9XYZ6
IntAct:Q9XYZ6 MINT:MINT-970905 STRING:Q9XYZ6
EnsemblMetazoa:FBtr0084738 GeneID:42957 KEGG:dme:Dmel_CG5808
UCSC:CG5808-RA FlyBase:FBgn0027617 InParanoid:Q9XYZ6 OMA:SIWGVVE
OrthoDB:EOG49S4P0 GenomeRNAi:42957 NextBio:831514 Uniprot:Q9XYZ6
Length = 653
Score = 131 (51.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 94 PNATM-DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEH 152
P+A M P LF+ ++N T++ L F +G +K ++ ++ TG YAF+E+E
Sbjct: 231 PDADMAPPENVLFVCKLNPVTTDDDLEIIFSSFGVLKGCEVIRDRKTGDSLQYAFVEFED 290
Query: 153 ERDMHSAYKHADGKKIDGRRVLVDVERS 180
++ +AY D ID RR+ VD +S
Sbjct: 291 QKSCEAAYFKMDNVLIDDRRIHVDFSQS 318
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 130 (50.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +I+++ ++ T K RG+AF+ +E D +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKSLDGKAIKVE 82
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 130 (50.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +I+++ ++ T K RG+AF+ +E D +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKSLDGKAIKVE 82
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
+L I ++Y T+ + LRR FE YG I + + +K + + +G+ F+ + RD A
Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDR 79
Query: 163 ADGKKIDGRRVLVDVER 179
DGK +DGR + V + +
Sbjct: 80 TDGKLVDGRELRVTLAK 96
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
+L I ++Y T+ + LRR FE YG I + + +K + + +G+ F+ + RD A
Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDR 79
Query: 163 ADGKKIDGRRVLVDVER 179
DGK +DGR + V + +
Sbjct: 80 TDGKLVDGRELRVTLAK 96
>UNIPROTKB|J3KQ82 [details] [associations]
symbol:RBMY1J "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC023342 EMBL:AC007320 HGNC:HGNC:23974 HGNC:HGNC:23917
ProteinModelPortal:J3KQ82 Ensembl:ENST00000445779
Ensembl:ENST00000454978 Uniprot:J3KQ82
Length = 459
Score = 130 (50.8 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L+ F +GPI +++++ ++ T K RG+AFI +E+ D +A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 164 DGKKIDGRRVLVD 176
+G + G+ + V+
Sbjct: 69 NGTSLHGKAIKVE 81
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 128 (50.1 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHS 158
DP FI + + TS+ LR FE YG + + +V +K +G+ RG+ FI ++ ++ M
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 159 AYKHADGKKIDGRRVLVD 176
A +G +DGR + VD
Sbjct: 64 AIAAMNGMDLDGRTITVD 81
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 130 (50.8 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHER---DMHSAY 160
+FI +N++T++ LR FE +G + ++ + TG+ RG+ F+ +++ + ++ S
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
Query: 161 KHADGKKIDGRRVLVDVERSRTVK 184
H DGK ID +R + E+ +T K
Sbjct: 225 HHLDGKIIDPKRAIPREEQEKTAK 248
Score = 108 (43.1 bits), Expect = 0.00083, P = 0.00083
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 89 DPN-SFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAF 147
DP + P + +F+ V D +E + R F +G + ++ +K TG+PRG+ F
Sbjct: 233 DPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGF 292
Query: 148 IEYEHER----DMHSAYKHADGKKIDGRR 172
+ YE+E M Y GK ++ +R
Sbjct: 293 VTYENESAVEATMSQPYITIHGKPVEVKR 321
>RGD|1307425 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1307425 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:CH473947 eggNOG:NOG315521 UniGene:Rn.218757
NextBio:680884 EMBL:BC099175 IPI:IPI00969773 SMR:Q4KLJ1
UCSC:RGD:1307425 Genevestigator:Q4KLJ1 Uniprot:Q4KLJ1
Length = 157
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+++ + + +L R F YGP++ + + N P G+AF+E+E RD A +
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGL 67
Query: 164 DGKKIDGRRVLVDV 177
DGK I G RV V++
Sbjct: 68 DGKVICGSRVRVEL 81
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 20/74 (27%), Positives = 42/74 (56%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
++++ V Y +E ++ F G + + +V+++ TG+PRG+AF+E+ E A +
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 163 ADGKKIDGRRVLVD 176
+G +GR + V+
Sbjct: 67 LNGVAFNGRNLRVN 80
>UNIPROTKB|Q15415 [details] [associations]
symbol:RBMY1F "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 HPA:HPA001534
MIM:400006 eggNOG:NOG140744 OrthoDB:EOG4TF0N7 EMBL:X76060
EMBL:AK313597 EMBL:AC023342 EMBL:AC007320 EMBL:BC030018
EMBL:BC152392 IPI:IPI00413949 IPI:IPI00879122 PIR:B49418
RefSeq:NP_001006117.2 RefSeq:NP_689798.1 UniGene:Hs.567746
HSSP:Q14011 ProteinModelPortal:Q15415 SMR:Q15415 STRING:Q15415
PhosphoSite:Q15415 PaxDb:Q15415 PRIDE:Q15415 DNASU:159163
DNASU:378951 Ensembl:ENST00000250831 Ensembl:ENST00000303766
Ensembl:ENST00000414629 GeneID:159163 GeneID:378951 KEGG:hsa:159163
KEGG:hsa:378951 UCSC:uc004fva.3 UCSC:uc010nxh.3 CTD:159163
CTD:378951 GeneCards:GC0YM024314 GeneCards:GC0YP024456
HGNC:HGNC:23974 HGNC:HGNC:23917 neXtProt:NX_Q15415
PharmGKB:PA134946298 InParanoid:Q15415 OMA:KDMNGTS PhylomeDB:Q15415
NextBio:87890 Bgee:Q15415 CleanEx:HS_RBMY1F Genevestigator:Q15415
Uniprot:Q15415
Length = 496
Score = 130 (50.8 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L+ F +GPI +++++ ++ T K RG+AFI +E+ D +A K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 164 DGKKIDGRRVLVD 176
+G + G+ + V+
Sbjct: 69 NGTSLHGKAIKVE 81
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 20/72 (27%), Positives = 41/72 (56%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+++ ++ T++ LR F YG + +++ ++ T + RG+ F+ Y + +A
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 164 DGKKIDGRRVLV 175
DGK+++GRRV V
Sbjct: 65 DGKELNGRRVSV 76
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 126 (49.4 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAY 160
F +F+ + Y T++S LR+ FEV+G I++ V++ ++ TGK RGY F+ A
Sbjct: 10 FTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 161 KHADGKKIDGRRVLVDV 177
K + IDGR+ V++
Sbjct: 70 KDPN-PIIDGRKANVNL 85
>ZFIN|ZDB-GENE-040426-1415 [details] [associations]
symbol:zgc:65772 "zgc:65772" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1415 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
KO:K12900 EMBL:FP017231 EMBL:BC056275 EMBL:BC066442 IPI:IPI00934956
RefSeq:NP_956827.1 UniGene:Dr.84143 Ensembl:ENSDART00000101091
GeneID:393505 KEGG:dre:393505 InParanoid:Q7SZS0 NextBio:20814531
Uniprot:Q7SZS0
Length = 248
Score = 127 (49.8 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSA 159
P +LF+ ++ ++ LRREF YGPI + + + + +PRG+A+I++E RD A
Sbjct: 8 PNSSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDA 67
Query: 160 YKHADGKKIDGRRV 173
+ D K + GR++
Sbjct: 68 LHNLDRKWVCGRQI 81
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 129 (50.5 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 99 DPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHS 158
D +K LF+ + +TSE L++ F YG + + V+ KVTGKPRG+ F+ + ++ D+
Sbjct: 4 DRYK-LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVK 62
Query: 159 AYKHAD---GKKIDGRRVL 174
A + GK +D R+ +
Sbjct: 63 ALRDTHFILGKPVDVRKAI 81
Score = 115 (45.5 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 95 NATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHER 154
N K +F+ ++ +T+E + + FE +G +V++H+ VT +PRG+ F+ Y+ E
Sbjct: 113 NGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSED 172
Query: 155 D----MHSAYKHADGKKIDGRRVL 174
M S + K+++ +R +
Sbjct: 173 SVEVVMQSNFHELSDKRVEVKRAI 196
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 129 (50.5 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG + +++++ ++ T K RG+AF+ +E D A +
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKALDGKPIKVE 82
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 101 FKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAY 160
F +F+ + Y T+++ LR+ FE +G I++ V++ ++ TGK RGY F+ A
Sbjct: 10 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 161 KHADGKKIDGRRVLVDV 177
K + IDGR+ V++
Sbjct: 70 KDPN-PIIDGRKANVNL 85
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +++ T ++ LR F +G + ++ ++ TG+ RG+ F+ + E +A
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 164 DGKKIDGRRVLVDVERSR 181
DGK+++GR + V+ R
Sbjct: 97 DGKELNGRHIRVNPANDR 114
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
++++ + T+E +L F G I + +V ++ TG+PRG+AFIE+ E A +
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 163 ADGKKIDGRRVLVDV 177
+G + +GR + V++
Sbjct: 66 MNGAEFNGRPLRVNL 80
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 129 (50.5 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG + +++++ ++ T K RG+AF+ +E D A +
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 164 DGKKIDGRRVLVD 176
+GK +DG+ + V+
Sbjct: 70 NGKALDGKPIKVE 82
>UNIPROTKB|Q7ZTJ8 [details] [associations]
symbol:srsf10 "MGC53149 protein" species:8355 "Xenopus
laevis" [GO:0006376 "mRNA splice site selection" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006376 HOVERGEN:HBG107480 HSSP:P11940 CTD:10772 KO:K12900
EMBL:BC046695 RefSeq:NP_001079656.1 UniGene:Xl.6570
ProteinModelPortal:Q7ZTJ8 GeneID:379343 KEGG:xla:379343
Xenbase:XB-GENE-866220 Uniprot:Q7ZTJ8
Length = 258
Score = 127 (49.8 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSA 159
P +LF+ + D LRREF YGPI + + + +PRG+A++++E RD A
Sbjct: 8 PNSSLFVRNIADDIRSEDLRREFGRYGPIVDVYVPLDYYNRRPRGFAYVQFEDVRDAEDA 67
Query: 160 YKHADGKKIDGRRV 173
+ D K I GR++
Sbjct: 68 LHNLDKKWICGRQI 81
>TAIR|locus:2086804 [details] [associations]
symbol:SCL30A "SC35-like splicing factor 30A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IGI;RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 EMBL:AP002038 HSSP:Q61474 HOGENOM:HOG000276233
KO:K12900 EMBL:AF370268 EMBL:AY063026 IPI:IPI00526651
RefSeq:NP_187966.1 UniGene:At.23948 ProteinModelPortal:Q9LHP2
SMR:Q9LHP2 STRING:Q9LHP2 PRIDE:Q9LHP2 EnsemblPlants:AT3G13570.1
GeneID:820559 KEGG:ath:AT3G13570 TAIR:At3g13570 InParanoid:Q9LHP2
OMA:KERSYSR PhylomeDB:Q9LHP2 ProtClustDB:CLSN2723371
ArrayExpress:Q9LHP2 Genevestigator:Q9LHP2 Uniprot:Q9LHP2
Length = 262
Score = 127 (49.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
+L + + +D + LRR FE +GP+K I + + TG PRG+ FI++ D A
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 163 ADGKKIDGRRV-LVDVERSR 181
DG + GR + +V E +R
Sbjct: 98 MDGYLLLGRELTVVFAEENR 117
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 129 (50.5 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 24/85 (28%), Positives = 50/85 (58%)
Query: 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156
T +P T+F+ R+++ + L++EFE G + +++ + T + RGY ++++E++
Sbjct: 164 TEEP-ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYA 222
Query: 157 HSAYKHADGKKIDGRRVLVDVERSR 181
A + GK+IDGR + D+ S+
Sbjct: 223 EKAIQEMQGKEIDGRPINCDMSTSK 247
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+++ + Y E+ L + F +G I+ + +V N TG+ +GYAF+ Y + A A
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALD-A 104
Query: 164 DGKKIDGRRVLVDVERSR 181
GK + GR ++V + +SR
Sbjct: 105 HGKDLQGRSLVVRIAKSR 122
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+++ + Y E+ L + F +G I+ + +V N TG+ +GYAF+ Y + A A
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALD-A 104
Query: 164 DGKKIDGRRVLVDVERSR 181
GK + GR ++V + +SR
Sbjct: 105 HGKDLQGRSLVVRIAKSR 122
>UNIPROTKB|Q5ZKR5 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
Length = 168
Score = 119 (46.9 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
TL++ +++ T+E +++ F G +K+IVM +K+ P G+ F+EY D A +
Sbjct: 44 TLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAMRF 103
Query: 163 ADGKKIDGRRVLVD 176
+G ++D R V D
Sbjct: 104 INGTRLDDRIVRTD 117
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI + + T++ LR F YG I++ V+V ++ T + RG+ F+ + E + +A
Sbjct: 4 LFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAM 63
Query: 164 DGKKIDGRRVLVDVERSR 181
+ ++ DGR + VD R
Sbjct: 64 NNQEFDGRIIRVDKASER 81
>UNIPROTKB|Q3ZBJ1 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9913 "Bos taurus" [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0005845 "mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 HOVERGEN:HBG052581 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:BC103267 IPI:IPI00687118
RefSeq:NP_001029568.1 UniGene:Bt.49382 ProteinModelPortal:Q3ZBJ1
SMR:Q3ZBJ1 STRING:Q3ZBJ1 PRIDE:Q3ZBJ1 Ensembl:ENSBTAT00000011684
GeneID:510872 KEGG:bta:510872 CTD:22916
GeneTree:ENSGT00390000003197 InParanoid:Q3ZBJ1 OMA:RQDYDPA
NextBio:20869659 GO:GO:0046833 GO:GO:0006408 Uniprot:Q3ZBJ1
Length = 156
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
TL++ +++ T+E ++ F G IKKI+M +K+ G+ F+EY D +A ++
Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
Query: 163 ADGKKIDGRRVLVD 176
+G ++D R + D
Sbjct: 101 INGTRLDDRIIRTD 114
>UNIPROTKB|E2RFC9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA] [GO:0005845 "mRNA cap binding complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0005845 GO:GO:0000340
GO:GO:0006370 PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AAEX03017103
RefSeq:XP_535779.1 ProteinModelPortal:E2RFC9 SMR:E2RFC9
PRIDE:E2RFC9 Ensembl:ENSCAFT00000020794 GeneID:478603
KEGG:cfa:478603 NextBio:20853918 Uniprot:E2RFC9
Length = 156
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
TL++ +++ T+E ++ F G IKKI+M +K+ G+ F+EY D +A ++
Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
Query: 163 ADGKKIDGRRVLVD 176
+G ++D R + D
Sbjct: 101 INGTRLDDRIIRTD 114
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGK 166
+GK
Sbjct: 68 NGK 70
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LF+ +++DT+E L + F YG I ++V+V ++ T + RG+ F+ +E+ D A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 164 DGK 166
+GK
Sbjct: 68 NGK 70
>UNIPROTKB|P52298 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0006408 "snRNA export
from nucleus" evidence=ISS;NAS] [GO:0000340 "RNA 7-methylguanosine
cap binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP;IDA;TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IDA;TAS] [GO:0005845
"mRNA cap binding complex" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0006446 "regulation of translational
initiation" evidence=IDA] [GO:0046833 "positive regulation of RNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000339 "RNA cap
binding" evidence=NAS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IDA] [GO:0000387 "spliceosomal snRNP
assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
[GO:0050434 "positive regulation of viral transcription"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0016032 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006368 GO:GO:0006406
GO:GO:0031047 GO:GO:0005845 GO:GO:0000340 GO:GO:0000387
GO:GO:0034660 EMBL:CH471191 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006370 GO:GO:0050434 GO:GO:0045292 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 PDB:3FEX PDB:3FEY PDBsum:3FEX
PDBsum:3FEY GO:GO:0008334 HOGENOM:HOG000217589 HOVERGEN:HBG052581
PANTHER:PTHR18847 PDB:1H2T PDB:1H2U PDB:1H2V PDB:1H6K PDB:1N52
PDB:1N54 PDBsum:1H2T PDBsum:1H2U PDBsum:1H2V PDBsum:1H6K
PDBsum:1N52 PDBsum:1N54 KO:K12883 CTD:22916 OMA:RQDYDPA
GO:GO:0046833 GO:GO:0006408 EMBL:X84157 EMBL:D59253 EMBL:AK297506
EMBL:AK315903 EMBL:AK316601 EMBL:AY644767 EMBL:BT006842
EMBL:BC001255 IPI:IPI00183500 IPI:IPI00927860 PIR:I37222 PIR:S60109
RefSeq:NP_001036005.1 RefSeq:NP_031388.2 UniGene:Hs.591671
DisProt:DP00393 ProteinModelPortal:P52298 SMR:P52298 DIP:DIP-33246N
IntAct:P52298 MINT:MINT-248711 STRING:P52298 PhosphoSite:P52298
DMDM:1705651 PaxDb:P52298 PRIDE:P52298 DNASU:22916
Ensembl:ENST00000321256 Ensembl:ENST00000452404 GeneID:22916
KEGG:hsa:22916 UCSC:uc003fxb.1 UCSC:uc011btz.1
GeneCards:GC03M196662 HGNC:HGNC:7659 HPA:HPA044850 MIM:605133
neXtProt:NX_P52298 PharmGKB:PA31462 InParanoid:P52298
PhylomeDB:P52298 ChiTaRS:NCBP2 EvolutionaryTrace:P52298
GenomeRNAi:22916 NextBio:43603 ArrayExpress:P52298 Bgee:P52298
CleanEx:HS_NCBP2 Genevestigator:P52298 GermOnline:ENSG00000114503
Uniprot:P52298
Length = 156
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
TL++ +++ T+E ++ F G IKKI+M +K+ G+ F+EY D +A ++
Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
Query: 163 ADGKKIDGRRVLVD 176
+G ++D R + D
Sbjct: 101 INGTRLDDRIIRTD 114
>UNIPROTKB|F2Z5Q9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
PANTHER:PTHR18847 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA EMBL:CU862047 RefSeq:XP_003358812.2 UniGene:Ssc.56609
ProteinModelPortal:F2Z5Q9 SMR:F2Z5Q9 PRIDE:F2Z5Q9
Ensembl:ENSSSCT00000024784 GeneID:100156513 KEGG:ssc:100156513
Uniprot:F2Z5Q9
Length = 156
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
TL++ +++ T+E ++ F G IKKI+M +K+ G+ F+EY D +A ++
Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
Query: 163 ADGKKIDGRRVLVD 176
+G ++D R + D
Sbjct: 101 INGTRLDDRIIRTD 114
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +++++ ++ T K RG+AF+ +E D A +
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 164 DGKKIDGRRVLVDVERSRTVK 184
+GK + + + R+ K
Sbjct: 72 NGKGVPSSTRFLQQFKPRSTK 92
>MGI|MGI:1915342 [details] [associations]
symbol:Ncbp2 "nuclear cap binding protein subunit 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005845
"mRNA cap binding complex" evidence=ISO] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1915342
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 EMBL:CH466521 GO:GO:0031047
GO:GO:0005845 GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724
GO:GO:0006370 GO:GO:0045292 HOGENOM:HOG000217589 HOVERGEN:HBG052581
OrthoDB:EOG470TJG PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA GO:GO:0046833
GO:GO:0006408 EMBL:AK008980 EMBL:AK012659 EMBL:AK077841
EMBL:AK147027 EMBL:BC118926 IPI:IPI00132019 RefSeq:NP_080830.1
UniGene:Mm.290027 ProteinModelPortal:Q9CQ49 SMR:Q9CQ49
STRING:Q9CQ49 PhosphoSite:Q9CQ49 PaxDb:Q9CQ49 PRIDE:Q9CQ49
Ensembl:ENSMUST00000023460 GeneID:68092 KEGG:mmu:68092
UCSC:uc007yxz.2 InParanoid:Q0VF93 NextBio:326400 Bgee:Q9CQ49
CleanEx:MM_NCBP2 Genevestigator:Q9CQ49
GermOnline:ENSMUSG00000022774 Uniprot:Q9CQ49
Length = 156
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
TL++ +++ T+E ++ F G IKKI+M +K+ G+ F+EY D +A ++
Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
Query: 163 ADGKKIDGRRVLVD 176
+G ++D R + D
Sbjct: 101 INGTRLDDRIIRTD 114
>RGD|1596188 [details] [associations]
symbol:Ncbp2 "nuclear cap binding protein subunit 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA;ISO] [GO:0000340
"RNA 7-methylguanosine cap binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005845 "mRNA cap
binding complex" evidence=ISO] [GO:0005846 "nuclear cap binding
complex" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA;ISO] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006446 "regulation of translational initiation" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO;ISS] [GO:0046833 "positive regulation of
RNA export from nucleus" evidence=ISS] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1596188 GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 GeneTree:ENSGT00390000003197
OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:BC161994
IPI:IPI00192753 RefSeq:NP_001102995.1 RefSeq:XP_003751123.1
UniGene:Rn.204538 ProteinModelPortal:B1WC40 SMR:B1WC40
STRING:B1WC40 PhosphoSite:B1WC40 PRIDE:B1WC40
Ensembl:ENSRNOT00000002381 GeneID:100911481 GeneID:689116
KEGG:rno:100911481 KEGG:rno:689116 UCSC:RGD:1596188 CTD:80235
NextBio:737969 Genevestigator:B1WC40 Uniprot:B1WC40
Length = 156
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
TL++ +++ T+E ++ F G IKKI+M +K+ G+ F+EY D +A ++
Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
Query: 163 ADGKKIDGRRVLVD 176
+G ++D R + D
Sbjct: 101 INGTRLDDRIIRTD 114
>UNIPROTKB|F1NIR6 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 PANTHER:PTHR18847
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AADN02020536
IPI:IPI00597191 ProteinModelPortal:F1NIR6
Ensembl:ENSGALT00000011075 Uniprot:F1NIR6
Length = 158
Score = 115 (45.5 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
TL++ +++ T+E ++ F G IKKI+M +KV G+ F+EY D +A ++
Sbjct: 43 TLYVGNLSFYTTEEQIHELFGKSGDIKKIIMGLDKVKKTACGFCFVEYYARGDAENAMRY 102
Query: 163 ADGKKIDGRRVLVD 176
+G ++D R + D
Sbjct: 103 INGTRLDDRIIRTD 116
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 129 (50.5 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYK-- 161
+FI +N+DT+E LR F YG + + ++ + TG+ RG+ F+ +E + K
Sbjct: 161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ 220
Query: 162 HA-DGKKIDGRRVLVDVERSRTVK 184
H DGK ID +R + E+ +T K
Sbjct: 221 HILDGKVIDPKRAIPRDEQDKTGK 244
>DICTYBASE|DDB_G0276725 [details] [associations]
symbol:DDB_G0276725 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0276725 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:COG0724
RefSeq:XP_643007.1 ProteinModelPortal:Q550X7
EnsemblProtists:DDB0202911 GeneID:8620667 KEGG:ddi:DDB_G0276725
InParanoid:Q550X7 Uniprot:Q550X7
Length = 78
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
++++ +N S+ L+ +F VYG I+ +V V K TG GYA+IEY ++ D A
Sbjct: 5 SIYVGGLNSHISKEILKTKFSVYGEIQSLVFVKGKETGISEGYAYIEYNNKEDAVKAIDD 64
Query: 163 ADGKKIDGRRV 173
+ + +G +
Sbjct: 65 LNDQPFEGNHL 75
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+++ + + ++++L R F YGP++ + + N P G+AF+E+E RD A +
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVREL 66
Query: 164 DGKKIDGRRVLVDV 177
DG+ + G RV V++
Sbjct: 67 DGRTLCGCRVRVEL 80
>UNIPROTKB|Q6DES0 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:CR761328 EMBL:BC077024 RefSeq:NP_001006879.1 UniGene:Str.170
ProteinModelPortal:Q6DES0 SMR:Q6DES0 STRING:Q6DES0 PRIDE:Q6DES0
GeneID:448671 KEGG:xtr:448671 Xenbase:XB-GENE-1005786
InParanoid:Q6DES0 Bgee:Q6DES0 Uniprot:Q6DES0
Length = 153
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
TL++ +++ T+E ++ F G +KKIVM +K+ G+ F+EY D A +
Sbjct: 38 TLYVGNLSFYTTEEQIHELFSKSGDVKKIVMGLDKIKKTACGFCFVEYYTRTDAEQAMRF 97
Query: 163 ADGKKIDGRRVLVD 176
+G ++D R + D
Sbjct: 98 INGTRLDDRIIRTD 111
>ZFIN|ZDB-GENE-030131-5228 [details] [associations]
symbol:rnps1 "RNA binding protein S1, serine-rich
domain" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5228 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 GeneTree:ENSGT00700000104336 CTD:10921
eggNOG:NOG331533 HOGENOM:HOG000044325 KO:K14325 EMBL:BC057251
EMBL:BC065953 IPI:IPI00490683 RefSeq:NP_956055.1 UniGene:Dr.75879
ProteinModelPortal:Q6PG31 STRING:Q6PG31 Ensembl:ENSDART00000128731
GeneID:327020 KEGG:dre:327020 InParanoid:Q6PG31 NextBio:20809844
Bgee:Q6PG31 Uniprot:Q6PG31
Length = 283
Score = 126 (49.4 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 100 PFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKV-TGKPRGYAFIEYEHERDMHS 158
P K L++ R+ + ++ ++ F YG IK I M +++ +GYA++EYE D
Sbjct: 136 PTK-LYLGRLTRNVTKDHIQEIFATYGKIKMIDMPSDRLHPNVSKGYAYVEYESPEDAQK 194
Query: 159 AYKHADGKKIDGRRV 173
A KH DG +IDG+ +
Sbjct: 195 ALKHMDGGQIDGQEI 209
>ZFIN|ZDB-GENE-040426-1798 [details] [associations]
symbol:zgc:77155 "zgc:77155" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-1798 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:BX547938 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 KO:K12896 EMBL:BC065586 IPI:IPI00493121
RefSeq:NP_991236.1 UniGene:Dr.701 SMR:Q6P0K2 STRING:Q6P0K2
Ensembl:ENSDART00000051185 Ensembl:ENSDART00000135776 GeneID:402972
KEGG:dre:402972 InParanoid:Q6P0K2 NextBio:20816781 Uniprot:Q6P0K2
Length = 258
Score = 125 (49.1 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
+++ + ++ +L R F YGP++ + + N P G+AF+EYE RD A K
Sbjct: 16 VYVGDLGNGAAKGELERAFSYYGPLRSVWVARN-----PPGFAFVEYEDARDAEDAVKGM 70
Query: 164 DGKKIDGRRVLVDVERSRTVK 184
DGK + G RV V++ + K
Sbjct: 71 DGKVLCGARVRVELSNGMSRK 91
>UNIPROTKB|P52299 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8355 "Xenopus laevis" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0000340 "RNA 7-methylguanosine cap binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005845
"mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=IDA] [GO:0006446 "regulation of
translational initiation" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 HOVERGEN:HBG052581
PANTHER:PTHR18847 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:BC072902 EMBL:X84788 PIR:I51602 RefSeq:NP_001167476.1
UniGene:Xl.43439 UniGene:Xl.81730 ProteinModelPortal:P52299
SMR:P52299 GeneID:100380998 KEGG:xla:100380998
Xenbase:XB-GENE-1005792 Uniprot:P52299
Length = 153
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
TL++ +++ T+E ++ F G +K+IVM +KV G+ F+EY D A +
Sbjct: 38 TLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAEQAMRF 97
Query: 163 ADGKKIDGRRVLVD 176
+G ++D R V D
Sbjct: 98 INGTRLDDRIVRTD 111
>UNIPROTKB|Q8WXF0 [details] [associations]
symbol:SRSF12 "Serine/arginine-rich splicing factor 12"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=NAS] [GO:0051082 "unfolded protein binding" evidence=NAS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0050733
"RS domain binding" evidence=NAS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IDA] [GO:0016482 "cytoplasmic transport"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005654 GO:GO:0000166
EMBL:CH471051 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0016482 GO:GO:0048025 GO:GO:0000381
HOVERGEN:HBG107480 EMBL:AL353135 GO:GO:0000395 GO:GO:0050733
EMBL:AF449428 EMBL:AK314008 EMBL:BC021715 IPI:IPI00942141
RefSeq:NP_542781.3 UniGene:Hs.254414 ProteinModelPortal:Q8WXF0
SMR:Q8WXF0 IntAct:Q8WXF0 STRING:Q8WXF0 PhosphoSite:Q8WXF0
DMDM:47606193 PRIDE:Q8WXF0 DNASU:135295 Ensembl:ENST00000452027
GeneID:135295 KEGG:hsa:135295 UCSC:uc021zcq.1 CTD:135295
GeneCards:GC06M089805 HGNC:HGNC:21220 HPA:HPA049782
neXtProt:NX_Q8WXF0 PharmGKB:PA165618223 InParanoid:Q8WXF0
OMA:XSRHRRF GenomeRNAi:135295 NextBio:83483 ArrayExpress:Q8WXF0
Bgee:Q8WXF0 Genevestigator:Q8WXF0 GermOnline:ENSG00000154548
Uniprot:Q8WXF0
Length = 261
Score = 125 (49.1 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 97 TMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDM 156
T P +LFI V T LRREF YGPI + + + T +PRG+A++++E RD
Sbjct: 5 TRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDA 64
Query: 157 HSAYKHADGKKIDGRRV 173
A + + K + GR++
Sbjct: 65 EDALYNLNRKWVCGRQI 81
>UNIPROTKB|B5G279 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
Length = 168
Score = 118 (46.6 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 103 TLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKH 162
TL++ +++ T+E +++ F G +K+IVM +K+ P G+ F+EY D A +
Sbjct: 44 TLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAMRF 103
Query: 163 ADGKKIDGRRVLVD 176
+G ++D R + D
Sbjct: 104 INGTRLDDRIIRTD 117
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 126 (49.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 29/103 (28%), Positives = 48/103 (46%)
Query: 80 KLEQEIALWDPNSFPNATMDPFKTLFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVT 139
+L +++L P+ F LFI + Y E LR F YG + ++ ++ T
Sbjct: 18 QLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRET 77
Query: 140 GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERSRT 182
G+ RG+ F+ + SA + DG+ + GR V V+ RT
Sbjct: 78 GRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 104 LFIARVNYDTSESKLRREFEVYGPIKKIVMVHNKVTGKPRGYAFIEYEHERDMHSAYKHA 163
LFI +N +T+E L F YG I +++++ ++ T K RG+AF+ +E D A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 164 DGK 166
+GK
Sbjct: 70 NGK 72
WARNING: HSPs involving 386 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.136 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 363 179 0.00089 109 3 11 22 0.46 32
31 0.39 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 636
No. of states in DFA: 574 (61 KB)
Total size of DFA: 151 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.09u 0.14s 15.23t Elapsed: 00:00:01
Total cpu time: 15.10u 0.15s 15.25t Elapsed: 00:00:01
Start: Thu Aug 15 14:26:59 2013 End: Thu Aug 15 14:27:00 2013
WARNINGS ISSUED: 2